BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030679
         (173 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2MGH6|GH101_STRPN Endo-alpha-N-acetylgalactosaminidase OS=Streptococcus pneumoniae
            serotype 4 (strain ATCC BAA-334 / TIGR4) GN=SP_0368 PE=1
            SV=1
          Length = 1767

 Score = 32.3 bits (72), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 44   NSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLL 87
            ++T+P +P  EKPE +L  +A   G    Y  E A+  + E++L
Sbjct: 1692 SATKPDAPTVEKPEFKLRSLASEQGKTPDYKQEIARPETPEQIL 1735


>sp|Q8DR60|GH101_STRR6 Endo-alpha-N-acetylgalactosaminidase OS=Streptococcus pneumoniae
            (strain ATCC BAA-255 / R6) GN=spr0328 PE=1 SV=1
          Length = 1767

 Score = 32.0 bits (71), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 44   NSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLL 87
            ++T+P +P  EKPE +L  +A   G    Y  E A+  + E++L
Sbjct: 1692 SATKPDAPTVEKPEFKLSSVASDQGKTPDYKQEIARPETPEQIL 1735


>sp|A0M791|ATPB_GRAFK ATP synthase subunit beta OS=Gramella forsetii (strain KT0803)
           GN=atpD PE=3 SV=1
          Length = 503

 Score = 31.2 bits (69), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 65  PRAGDDGSYPVERAK------AISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCI 118
           P+AG+DG  P+ R        ++S E L   I + + IE Y+  GK+   GG G   T +
Sbjct: 108 PKAGEDG-LPIHRQAPKFEDLSVSTEVLFTGIKVIDLIEPYSKGGKIGLFGGAGVGKTVL 166

Query: 119 VEK 121
           +++
Sbjct: 167 IQE 169


>sp|Q02PF8|NQRF_PSEAB Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=nqrF PE=3 SV=1
          Length = 407

 Score = 30.4 bits (67), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 27/72 (37%)

Query: 82  SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTC---IVE-----------------K 121
           +G KLL+ +  +N     A       CGGGG+C  C   +VE                  
Sbjct: 51  AGGKLLQTLATNNVFLSSA-------CGGGGTCAQCKCVVVEGGGEMLPTEESHFTRRQA 103

Query: 122 PESWRLACQTIV 133
            E WRL+CQT V
Sbjct: 104 KEGWRLSCQTPV 115


>sp|Q9HZL1|NQRF_PSEAE Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
           aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
           LMG 12228) GN=nqrF PE=3 SV=1
          Length = 407

 Score = 30.4 bits (67), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 27/72 (37%)

Query: 82  SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTC---IVE-----------------K 121
           +G KLL+ +  +N     A       CGGGG+C  C   +VE                  
Sbjct: 51  AGGKLLQTLAANNVFLSSA-------CGGGGTCAQCKCVVVEGGGEMLPTEESHFTRRQA 103

Query: 122 PESWRLACQTIV 133
            E WRL+CQT V
Sbjct: 104 KEGWRLSCQTPV 115


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,247,057
Number of Sequences: 539616
Number of extensions: 2782116
Number of successful extensions: 6951
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6933
Number of HSP's gapped (non-prelim): 32
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)