Query 030679
Match_columns 173
No_of_seqs 200 out of 1118
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 02:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02593 adrenodoxin-like ferr 99.7 1.1E-17 2.4E-22 128.4 9.2 90 58-171 1-116 (117)
2 PTZ00490 Ferredoxin superfamil 99.7 2.1E-17 4.5E-22 131.8 9.4 82 55-151 33-140 (143)
3 TIGR02007 fdx_isc ferredoxin, 99.7 4.9E-16 1.1E-20 117.4 9.7 72 64-150 8-103 (110)
4 KOG3309 Ferredoxin [Energy pro 99.6 1.4E-15 3E-20 123.3 8.7 110 24-149 11-145 (159)
5 TIGR02008 fdx_plant ferredoxin 99.6 4.4E-15 9.5E-20 109.7 8.4 61 76-149 15-93 (97)
6 CHL00134 petF ferredoxin; Vali 99.6 5.5E-15 1.2E-19 110.0 9.0 61 76-149 17-95 (99)
7 PRK10713 2Fe-2S ferredoxin Yfa 99.6 1.6E-14 3.4E-19 104.4 8.1 68 55-146 1-84 (84)
8 PTZ00038 ferredoxin; Provision 99.5 5E-14 1.1E-18 117.3 9.9 63 76-151 107-187 (191)
9 PLN03136 Ferredoxin; Provision 99.5 3.7E-14 8.1E-19 113.7 8.5 79 53-151 50-146 (148)
10 TIGR01941 nqrF NADH:ubiquinone 99.5 5.2E-14 1.1E-18 125.3 9.2 75 54-148 28-122 (405)
11 PRK05464 Na(+)-translocating N 99.5 1.8E-13 3.9E-18 122.0 9.4 75 54-148 32-126 (409)
12 COG2871 NqrF Na+-transporting 99.4 1E-13 2.3E-18 123.4 6.2 74 57-150 36-129 (410)
13 COG0633 Fdx Ferredoxin [Energy 99.4 5.5E-13 1.2E-17 100.0 8.1 56 77-145 16-94 (102)
14 cd00207 fer2 2Fe-2S iron-sulfu 99.4 5.4E-13 1.2E-17 93.0 6.3 57 76-145 10-84 (84)
15 PRK05713 hypothetical protein; 99.4 8.7E-13 1.9E-17 113.4 7.7 59 76-147 9-85 (312)
16 COG3894 Uncharacterized metal- 99.4 4.1E-13 8.8E-18 125.6 5.2 69 69-154 8-94 (614)
17 PRK11872 antC anthranilate dio 99.4 1.6E-12 3.4E-17 113.3 8.4 73 57-150 4-96 (340)
18 PRK07609 CDP-6-deoxy-delta-3,4 99.3 2.5E-12 5.3E-17 110.9 8.2 63 76-151 12-94 (339)
19 PRK10684 HCP oxidoreductase, N 99.2 1.9E-11 4E-16 105.8 7.8 67 56-144 247-331 (332)
20 PF00111 Fer2: 2Fe-2S iron-sul 99.2 1.6E-11 3.4E-16 85.4 4.7 51 76-134 8-78 (78)
21 PF13085 Fer2_3: 2Fe-2S iron-s 99.2 1.9E-11 4E-16 93.9 4.9 90 57-148 1-93 (110)
22 TIGR02160 PA_CoA_Oxy5 phenylac 99.2 6.7E-11 1.4E-15 102.5 8.2 55 78-145 277-350 (352)
23 PLN00129 succinate dehydrogena 99.1 2.5E-10 5.5E-15 99.5 6.7 103 58-163 46-157 (276)
24 PRK13552 frdB fumarate reducta 99.0 3.3E-10 7.1E-15 96.3 5.6 88 57-147 6-94 (239)
25 COG0479 FrdB Succinate dehydro 99.0 8.3E-10 1.8E-14 94.6 5.2 104 56-163 3-114 (234)
26 PRK07569 bidirectional hydroge 98.9 6.6E-09 1.4E-13 87.2 8.3 70 55-147 1-77 (234)
27 PRK12575 succinate dehydrogena 98.9 2.5E-09 5.5E-14 90.9 5.5 86 57-147 6-92 (235)
28 PRK08640 sdhB succinate dehydr 98.9 2.4E-09 5.1E-14 91.6 5.2 86 57-147 7-99 (249)
29 PRK12385 fumarate reductase ir 98.9 1.9E-09 4.2E-14 91.7 3.9 87 57-147 8-94 (244)
30 PF13510 Fer2_4: 2Fe-2S iron-s 98.8 6.3E-09 1.4E-13 75.2 5.5 66 57-145 3-78 (82)
31 PRK06259 succinate dehydrogena 98.8 7.3E-09 1.6E-13 94.2 7.1 84 57-148 5-88 (486)
32 PRK12386 fumarate reductase ir 98.8 7.4E-09 1.6E-13 89.1 6.1 75 71-147 17-91 (251)
33 PRK12577 succinate dehydrogena 98.8 1.3E-08 2.9E-13 89.7 7.6 103 57-163 4-123 (329)
34 PRK05950 sdhB succinate dehydr 98.7 2.2E-08 4.8E-13 83.9 6.7 104 57-163 1-113 (232)
35 PRK07570 succinate dehydrogena 98.7 1E-08 2.2E-13 88.0 4.6 89 57-148 4-103 (250)
36 PRK12576 succinate dehydrogena 98.7 4.8E-08 1E-12 84.8 7.6 103 56-162 9-121 (279)
37 TIGR00384 dhsB succinate dehyd 98.6 5.5E-08 1.2E-12 80.8 3.8 74 71-147 12-85 (220)
38 PRK08166 NADH dehydrogenase su 98.3 2.4E-06 5.2E-11 83.1 7.7 60 76-147 9-80 (847)
39 PRK12814 putative NADPH-depend 98.2 5.7E-06 1.2E-10 78.5 8.1 72 55-149 1-79 (652)
40 PTZ00305 NADH:ubiquinone oxido 97.9 3.5E-05 7.6E-10 68.4 7.0 71 53-146 64-142 (297)
41 PRK08493 NADH dehydrogenase su 97.8 4.1E-05 8.8E-10 75.5 7.0 64 76-146 9-72 (819)
42 PRK11433 aldehyde oxidoreducta 97.8 7.2E-05 1.6E-09 63.9 7.2 79 54-147 48-126 (217)
43 PRK07860 NADH dehydrogenase su 97.8 7.8E-05 1.7E-09 72.7 8.3 60 76-147 12-78 (797)
44 KOG3049 Succinate dehydrogenas 97.7 0.00015 3.2E-09 63.1 8.4 89 56-148 47-138 (288)
45 PRK09130 NADH dehydrogenase su 97.6 0.00012 2.7E-09 70.5 6.5 59 76-146 9-75 (687)
46 TIGR01973 NuoG NADH-quinone ox 97.5 0.00023 4.9E-09 66.9 7.1 59 76-146 6-72 (603)
47 PRK09908 xanthine dehydrogenas 97.5 0.00016 3.4E-09 59.2 5.3 77 76-160 18-95 (159)
48 PRK09129 NADH dehydrogenase su 97.5 0.00016 3.5E-09 69.7 6.3 59 76-146 9-74 (776)
49 TIGR03193 4hydroxCoAred 4-hydr 97.5 0.0002 4.3E-09 57.9 5.0 78 76-160 11-89 (148)
50 COG1034 NuoG NADH dehydrogenas 97.1 0.0016 3.5E-08 63.6 7.9 84 76-167 9-94 (693)
51 TIGR03198 pucE xanthine dehydr 96.8 0.0029 6.3E-08 51.2 5.6 75 57-147 3-78 (151)
52 COG3383 Uncharacterized anaero 96.5 0.0058 1.3E-07 60.9 6.7 52 76-134 13-69 (978)
53 PRK08345 cytochrome-c3 hydroge 96.5 0.0019 4.1E-08 55.4 2.9 44 87-131 227-273 (289)
54 cd06219 DHOD_e_trans_like1 FAD 96.5 0.0037 8E-08 52.1 4.2 45 87-132 195-239 (248)
55 PRK00054 dihydroorotate dehydr 96.5 0.0021 4.6E-08 53.5 2.8 44 87-131 196-239 (250)
56 PRK09800 putative hypoxanthine 96.4 0.0029 6.3E-08 63.5 4.0 66 76-147 12-77 (956)
57 COG2080 CoxS Aerobic-type carb 96.4 0.0064 1.4E-07 49.8 5.1 63 76-145 13-76 (156)
58 PRK06222 ferredoxin-NADP(+) re 96.3 0.004 8.6E-08 53.2 3.8 44 87-131 196-239 (281)
59 cd06192 DHOD_e_trans_like FAD/ 95.7 0.012 2.5E-07 48.5 3.8 45 87-132 193-239 (243)
60 PRK05802 hypothetical protein; 95.4 0.019 4.1E-07 50.6 4.0 45 89-134 271-318 (320)
61 cd06218 DHOD_e_trans FAD/NAD b 95.2 0.019 4.2E-07 47.8 3.5 44 87-131 195-241 (246)
62 TIGR03311 Se_dep_Molyb_1 selen 95.0 0.031 6.8E-07 55.5 4.6 75 77-160 9-85 (848)
63 PRK12778 putative bifunctional 94.9 0.027 5.8E-07 54.4 3.9 46 87-133 196-241 (752)
64 TIGR03313 Se_sel_red_Mo probab 94.8 0.026 5.5E-07 56.8 3.6 66 76-147 8-73 (951)
65 TIGR01372 soxA sarcosine oxida 94.4 0.13 2.9E-06 51.5 7.5 73 56-146 11-93 (985)
66 TIGR02963 xanthine_xdhA xanthi 94.1 0.067 1.5E-06 49.8 4.5 77 76-160 10-99 (467)
67 TIGR02911 sulfite_red_B sulfit 93.9 0.033 7.1E-07 47.1 1.9 40 87-131 205-247 (261)
68 cd06220 DHOD_e_trans_like2 FAD 93.9 0.06 1.3E-06 44.2 3.4 42 87-131 182-223 (233)
69 PF10418 DHODB_Fe-S_bind: Iron 93.4 0.048 1E-06 35.1 1.6 27 104-131 2-30 (40)
70 cd06221 sulfite_reductase_like 93.0 0.06 1.3E-06 45.1 2.0 39 87-130 205-246 (253)
71 PRK12775 putative trifunctiona 92.7 0.14 2.9E-06 51.9 4.3 44 89-133 198-241 (1006)
72 TIGR02969 mam_aldehyde_ox alde 92.4 0.13 2.8E-06 53.6 3.8 76 56-147 1-88 (1330)
73 PRK08221 anaerobic sulfite red 92.3 0.062 1.3E-06 45.5 1.2 33 87-120 207-242 (263)
74 PRK12779 putative bifunctional 89.7 0.37 7.9E-06 48.6 4.0 45 87-132 862-910 (944)
75 KOG2282 NADH-ubiquinone oxidor 88.4 0.82 1.8E-05 44.5 5.1 61 56-134 31-98 (708)
76 PLN00192 aldehyde oxidase 88.2 0.7 1.5E-05 48.4 4.9 64 76-147 15-91 (1344)
77 COG4630 XdhA Xanthine dehydrog 74.1 2.8 6.1E-05 39.6 2.8 62 78-146 21-92 (493)
78 PLN02906 xanthine dehydrogenas 56.5 7.9 0.00017 40.7 2.4 57 84-147 2-68 (1319)
79 PRK06567 putative bifunctional 49.8 8.3 0.00018 40.0 1.3 39 93-131 959-999 (1028)
80 PRK01777 hypothetical protein; 41.3 53 0.0012 24.6 4.2 26 74-100 17-42 (95)
81 cd01760 RBD Ubiquitin-like dom 40.7 36 0.00078 24.3 3.1 29 69-100 7-39 (72)
82 PF02824 TGS: TGS domain; Int 35.7 24 0.00053 23.7 1.5 27 69-100 6-32 (60)
83 cd01816 Raf_RBD Ubiquitin doma 33.0 51 0.0011 24.2 2.9 17 76-93 12-28 (74)
84 smart00455 RBD Raf-like Ras-bi 28.4 67 0.0015 22.5 2.8 30 69-100 7-39 (70)
85 PRK05659 sulfur carrier protei 28.1 91 0.002 20.7 3.3 23 77-100 9-31 (66)
86 PRK07440 hypothetical protein; 27.6 1.2E+02 0.0026 21.1 3.9 32 57-100 4-35 (70)
87 PF03658 Ub-RnfH: RnfH family 24.8 82 0.0018 23.3 2.8 25 75-100 15-39 (84)
88 cd01817 RGS12_RBD Ubiquitin do 24.3 98 0.0021 22.5 3.0 31 68-100 6-39 (73)
89 PRK10509 bacterioferritin-asso 23.0 39 0.00084 23.4 0.7 32 87-120 14-45 (64)
90 PF02196 RBD: Raf-like Ras-bin 21.4 1.5E+02 0.0033 20.6 3.5 29 69-100 8-40 (71)
91 PRK08364 sulfur carrier protei 20.7 1.8E+02 0.004 19.9 3.8 36 55-98 2-37 (70)
92 COG2440 FixX Ferredoxin-like p 20.1 43 0.00094 25.8 0.5 11 107-120 66-76 (99)
No 1
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.74 E-value=1.1e-17 Score=128.37 Aligned_cols=90 Identities=30% Similarity=0.411 Sum_probs=71.2
Q ss_pred EEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE-----------------
Q 030679 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE----------------- 120 (173)
Q Consensus 58 I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~----------------- 120 (173)
|+|+|++ +||. .+++++..|++|| ++++++|+++++ .|||.|.||||+|+
T Consensus 1 ~~V~fi~----~~G~--~~~v~~~~G~tLl-~a~~~~gi~i~~------~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E 67 (117)
T PLN02593 1 ISVTFVD----KDGE--ERTVKAPVGMSLL-EAAHENDIELEG------ACEGSLACSTCHVIVMDEKVYNKLPEPTDEE 67 (117)
T ss_pred CEEEEEc----CCCC--EEEEEECCCCcHH-HHHHHcCCCCCc------cCCCcceeCCCEEEEecCccccCCCCCChHH
Confidence 5788875 5664 3679999999988 999999999999 79999999999999
Q ss_pred ---------cCCCeEEeeeceecccCCCcceEEEeccHHHHHHHHHhhhccccccCCCCC
Q 030679 121 ---------KPESWRLACQTIVGNKENSGKVCSRTMFLLNLLAFLQKEMRVTSLNHSKLP 171 (173)
Q Consensus 121 ---------l~eg~RLACQt~v~~~~~~gdv~V~~~p~~~~~~~~~~~~~~~~~~~~~~~ 171 (173)
..++||||||+.+.++. ++++|+++.... ..-+-+|-+-|
T Consensus 68 ~~~L~~~~~~~~~sRLaCQ~~v~~~~--~~~~v~ip~~~~---------~~~~~~~~~~~ 116 (117)
T PLN02593 68 NDMLDLAFGLTETSRLGCQVIAKPEL--DGMRLALPAATR---------NFAVDGHVPKP 116 (117)
T ss_pred HHHHhcccCCCCCeEecceeEeecCC--CCEEEEcCchhc---------cccccCCCCCC
Confidence 24689999999997322 579999987642 22445566655
No 2
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.72 E-value=2.1e-17 Score=131.85 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=69.0
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhC-CCCccccccccccCCCceeecccEEE-------------
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVE------------- 120 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~-GI~l~~~~~~~~~CGG~G~CGTC~V~------------- 120 (173)
..+|+|+|++ +||+. ++++++.|++|| ++++++ ++++++ .|||.|.||||||+
T Consensus 33 ~g~v~I~~~~----~dG~~--~~v~~~~G~sLL-eal~~~~~i~i~~------~CGG~g~CgtC~V~V~~g~~~~l~~~~ 99 (143)
T PTZ00490 33 PGKVKVCVKK----RDGTH--CDVEVPVGMSLM-HALRDVAKLDVEG------TCNGCMQCATCHVYLSAASFKKLGGPS 99 (143)
T ss_pred CCcEEEEEEc----CCCCE--EEEEECCCccHH-HHHHHcCCCCccc------cCCCCCEeCCCEEEECCCccccCCCCC
Confidence 3579999986 67753 789999999999 999995 799999 89999999999999
Q ss_pred ------------cCCCeEEeeeceecccCCCcceEEEeccHHH
Q 030679 121 ------------KPESWRLACQTIVGNKENSGKVCSRTMFLLN 151 (173)
Q Consensus 121 ------------l~eg~RLACQt~v~~~~~~gdv~V~~~p~~~ 151 (173)
+.+++|||||+.+.++. ++++|+++++..
T Consensus 100 ~~E~~~L~~~~~~~~gsRLaCQi~v~~~l--dgl~V~vp~~~~ 140 (143)
T PTZ00490 100 EEEEDVLAKALDVKETSRLACQVDLTPEM--DGLEVELPSYVT 140 (143)
T ss_pred hHHHHHhhccccCCCCcEEeeeEEEecCC--CCEEEEeCcccc
Confidence 35789999999998432 578999987653
No 3
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.66 E-value=4.9e-16 Score=117.40 Aligned_cols=72 Identities=26% Similarity=0.425 Sum_probs=60.0
Q ss_pred cCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE-----------------------
Q 030679 64 APRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE----------------------- 120 (173)
Q Consensus 64 ~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~----------------------- 120 (173)
+....|+| +.+++.+|++|| ++|+++|+++++ .|||.|.||||+|+
T Consensus 8 ~~~~~p~~----~~~~~~~g~tLL-~a~~~~gi~i~~------~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~ 76 (110)
T TIGR02007 8 HEDLCPEG----AVVEAKPGETIL-DVALDNGIEIEH------ACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAW 76 (110)
T ss_pred CcccCCCC----eEEEECCCChHH-HHHHHcCCCccc------cCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhcc
Confidence 33344666 579999999999 999999999999 79999999999988
Q ss_pred -cCCCeEEeeeceecccCCCcceEEEeccHH
Q 030679 121 -KPESWRLACQTIVGNKENSGKVCSRTMFLL 150 (173)
Q Consensus 121 -l~eg~RLACQt~v~~~~~~gdv~V~~~p~~ 150 (173)
..++||||||+.+. ++|++|+++...
T Consensus 77 ~~~~~~RLaCq~~~~----~~dl~v~~~~~~ 103 (110)
T TIGR02007 77 GLEPDSRLSCQAVVA----DEDLVVEIPKYT 103 (110)
T ss_pred CCCCCcEEeeeEEEc----CCCEEEEECchh
Confidence 13569999999987 248999998653
No 4
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.62 E-value=1.4e-15 Score=123.28 Aligned_cols=110 Identities=22% Similarity=0.305 Sum_probs=83.4
Q ss_pred ccccccccCCCCCceeEEeecCCCCCCCCCCCCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCcccccc
Q 030679 24 SSFKSKLSSPRRPKFVSFAVNSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYG 103 (173)
Q Consensus 24 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~pmp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~ 103 (173)
..+|-+.+-+++.|......... .+.++.+...|+|+|++ +||+. ..++...|++|| +++.++||++++
T Consensus 11 ~~~~~a~~~~~~~f~~~~t~~~~-~~~~~~~~e~i~Itfv~----~dG~~--~~i~g~vGdtlL-d~ah~n~idleG--- 79 (159)
T KOG3309|consen 11 QISRLAPFTRNHIFRTSSTSEFS-PSKGPRKVEDIKITFVD----PDGEE--IKIKGKVGDTLL-DAAHENNLDLEG--- 79 (159)
T ss_pred chhhccccccceeeccCcccccc-cccCCCCCceEEEEEEC----CCCCE--EEeeeecchHHH-HHHHHcCCCccc---
Confidence 34455566677777665432221 23344555679999997 78853 678999999999 999999999999
Q ss_pred ccccCCCceeecccEEE-------------------------cCCCeEEeeeceecccCCCcceEEEeccH
Q 030679 104 KVMNCGGGGSCGTCIVE-------------------------KPESWRLACQTIVGNKENSGKVCSRTMFL 149 (173)
Q Consensus 104 ~~~~CGG~G~CGTC~V~-------------------------l~eg~RLACQt~v~~~~~~gdv~V~~~p~ 149 (173)
+|.|.-+|.||||+ +.+++||.||.....+. .-++|.+|--
T Consensus 80 ---ACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~tSRLGCQI~l~kel--dG~~v~vP~a 145 (159)
T KOG3309|consen 80 ---ACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTETSRLGCQIVLTKEL--DGMRVAVPEA 145 (159)
T ss_pred ---cccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccccccceEEEecccc--CCcEEECccc
Confidence 99999999999999 67889999999998433 3467777643
No 5
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.60 E-value=4.4e-15 Score=109.69 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=55.8
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE------------------cCCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------------l~eg~RLACQt~v~~~~ 137 (173)
+++++.+|++|| |+|+++||++++ .|+ .|.||+|+|+ +.+||+|+||+.+.
T Consensus 15 ~~~~~~~g~tLL-da~~~~Gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~~~--- 83 (97)
T TIGR02008 15 ETIECPDDQYIL-DAAEEAGIDLPY------SCR-AGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAYPT--- 83 (97)
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCEEC---
Confidence 679999999999 999999999999 799 7999999999 35789999999999
Q ss_pred CCcceEEEeccH
Q 030679 138 NSGKVCSRTMFL 149 (173)
Q Consensus 138 ~~gdv~V~~~p~ 149 (173)
+|++|+++..
T Consensus 84 --~di~v~~~~~ 93 (97)
T TIGR02008 84 --SDCTIETHKE 93 (97)
T ss_pred --CCeEEEeccc
Confidence 9999998754
No 6
>CHL00134 petF ferredoxin; Validated
Probab=99.60 E-value=5.5e-15 Score=109.99 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=56.4
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE------------------cCCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------------l~eg~RLACQt~v~~~~ 137 (173)
+.+++++|++|| ++|+++||++++ .|+ .|.||+|+++ ..+||+|+||+++.
T Consensus 17 ~~~~~~~~~tLL-~a~~~~Gi~i~~------~C~-~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~--- 85 (99)
T CHL00134 17 VTIDCPDDVYIL-DAAEEQGIDLPY------SCR-AGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCVAYPT--- 85 (99)
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEeeCEEC---
Confidence 579999999999 999999999999 799 8999999999 35789999999999
Q ss_pred CCcceEEEeccH
Q 030679 138 NSGKVCSRTMFL 149 (173)
Q Consensus 138 ~~gdv~V~~~p~ 149 (173)
+|++|+++..
T Consensus 86 --~d~~i~~~~~ 95 (99)
T CHL00134 86 --SDCTILTHQE 95 (99)
T ss_pred --CCeEEEeccc
Confidence 9999998765
No 7
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.56 E-value=1.6e-14 Score=104.40 Aligned_cols=68 Identities=18% Similarity=0.339 Sum_probs=57.1
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecC-ChhHHHHHHHhCCCCccccccccccCCCceeecccEEE-------------
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------- 120 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~-G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------- 120 (173)
|++|+|.. .| +.+++.+ |++|| ++|+++||++++ .|+ .|.||+|+++
T Consensus 1 ~~~v~~~~-------~~----~~~~~~~~~~tlL-~a~~~~gi~~p~------~Cr-~G~Cg~C~~~~~sG~v~~~~~~~ 61 (84)
T PRK10713 1 MARVTLRI-------TG----TQLLCQDEHPSLL-AALESHNVAVEY------QCR-EGYCGSCRTRLVAGQVDWIAEPL 61 (84)
T ss_pred CCEEEEEe-------CC----cEEEecCCCCcHH-HHHHHcCCCCCC------CCC-CeECCCCEeEEEeCeEecCCCcc
Confidence 67777743 22 3688886 59999 999999999999 799 7999999999
Q ss_pred --cCCCeEEeeeceecccCCCcceEEEe
Q 030679 121 --KPESWRLACQTIVGNKENSGKVCSRT 146 (173)
Q Consensus 121 --l~eg~RLACQt~v~~~~~~gdv~V~~ 146 (173)
+.+|++|+||+++. +|++|++
T Consensus 62 ~~~~~g~~L~C~~~p~-----sd~~ie~ 84 (84)
T PRK10713 62 AFIQPGEILPCCCRAK-----GDIEIEM 84 (84)
T ss_pred chhhCCEEEEeeCEEC-----CCEEEeC
Confidence 45679999999999 8998873
No 8
>PTZ00038 ferredoxin; Provisional
Probab=99.53 E-value=5e-14 Score=117.29 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=57.8
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE------------------cCCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------------l~eg~RLACQt~v~~~~ 137 (173)
+++++++|++|| |+|+++||++++ .|++ |.||+|+|+ +.+||+|+||+++.
T Consensus 107 ~~~~v~~geTIL-dAae~aGI~lp~------sCr~-G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa~p~--- 175 (191)
T PTZ00038 107 KVIECDEDEYIL-DAAERQGVELPY------SCRG-GSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCYPK--- 175 (191)
T ss_pred EEEEeCCCCcHH-HHHHHcCCCCCc------CCCC-ccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeCEEC---
Confidence 579999999999 999999999999 7996 999999999 36789999999999
Q ss_pred CCcceEEEeccHHH
Q 030679 138 NSGKVCSRTMFLLN 151 (173)
Q Consensus 138 ~~gdv~V~~~p~~~ 151 (173)
+|++|+++.+..
T Consensus 176 --sDi~Ie~p~e~~ 187 (191)
T PTZ00038 176 --SDCTIETHKEDE 187 (191)
T ss_pred --CCeEEecCChHH
Confidence 999999987753
No 9
>PLN03136 Ferredoxin; Provisional
Probab=99.52 E-value=3.7e-14 Score=113.72 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=67.1
Q ss_pred CCCCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE------------
Q 030679 53 PEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------ 120 (173)
Q Consensus 53 ~pmp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------ 120 (173)
.-|...+|+|.+ ++|. +++++++|++|| |+++++||++++ .|+ .|.||+|+++
T Consensus 50 ~~m~~~~V~l~~----~~~~---~~~~~~~g~tIL-dAa~~~Gi~lp~------sCr-~G~CGtC~~~l~~G~V~~~~~~ 114 (148)
T PLN03136 50 TAMATYKVKFIT----PEGE---QEVECEEDVYVL-DAAEEAGIDLPY------SCR-AGSCSSCAGKVVSGSIDQSDQS 114 (148)
T ss_pred ceeeeEEEEEec----CCCc---EEEEeCCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEEEEecCcCccCccc
Confidence 345677888864 3442 579999999999 999999999999 799 8999999999
Q ss_pred ------cCCCeEEeeeceecccCCCcceEEEeccHHH
Q 030679 121 ------KPESWRLACQTIVGNKENSGKVCSRTMFLLN 151 (173)
Q Consensus 121 ------l~eg~RLACQt~v~~~~~~gdv~V~~~p~~~ 151 (173)
+.+||+|+||+++. +|++|+++.+..
T Consensus 115 ~L~~~e~~~G~~LaC~a~p~-----sD~~Ie~~~e~~ 146 (148)
T PLN03136 115 FLDDEQISEGYVLTCVAYPT-----SDVVIETHKEEA 146 (148)
T ss_pred CCCHHHhcCCEEEEeEeEEC-----CCcEEecCChhh
Confidence 35789999999999 899999987654
No 10
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.51 E-value=5.2e-14 Score=125.32 Aligned_cols=75 Identities=33% Similarity=0.615 Sum_probs=63.4
Q ss_pred CCCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE-------------
Q 030679 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------- 120 (173)
Q Consensus 54 pmp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------- 120 (173)
-+.+|+|++. ||+. +++++.+|++|| ++++++|+++++ .|+|.|.||+|+|+
T Consensus 28 ~~~~v~v~~~------~~~~--~~~~~~~g~tlL-~a~~~~gi~i~~------~C~g~G~Cg~C~v~v~~G~~~~~~~~~ 92 (405)
T TIGR01941 28 SSGDITIGIN------DDEE--KSITVPAGGKLL-NTLASNGIFISS------ACGGGGTCGQCRVRVVEGGGEILPTEL 92 (405)
T ss_pred ccccEEEEEc------CCCc--eEEEECCCChHH-HHHHHcCCCCcc------cCCCccEeCCCEEEEccCCcCCChhhh
Confidence 3567888763 3322 579999999999 999999999999 79999999999999
Q ss_pred -------cCCCeEEeeeceecccCCCcceEEEecc
Q 030679 121 -------KPESWRLACQTIVGNKENSGKVCSRTMF 148 (173)
Q Consensus 121 -------l~eg~RLACQt~v~~~~~~gdv~V~~~p 148 (173)
+.+|+|||||+.+. +|++|+++.
T Consensus 93 ~~L~~~~~~~g~rLaCq~~~~-----~d~~i~~~~ 122 (405)
T TIGR01941 93 SHFSKREAKEGWRLSCQVKVK-----QDMSIEIPE 122 (405)
T ss_pred hhcCHhHhcCCcEEEeeCEEC-----CCEEEEECc
Confidence 34678999999999 899999863
No 11
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.47 E-value=1.8e-13 Score=122.02 Aligned_cols=75 Identities=32% Similarity=0.585 Sum_probs=63.2
Q ss_pred CCCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE-------------
Q 030679 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------- 120 (173)
Q Consensus 54 pmp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------- 120 (173)
|-.+|+|++.+. .+ +++++++|++|| ++++++|+++++ .|+|.|.||+|+|+
T Consensus 32 ~~~~~~i~~~~~----~~----~~~~~~~g~tLL-~a~~~~gi~i~~------~C~g~G~CgtC~v~v~~G~~~~~~~e~ 96 (409)
T PRK05464 32 PSGDVTIKINGD----PE----KTITVPAGGKLL-GALASNGIFLSS------ACGGGGSCGQCRVKVKEGGGDILPTEL 96 (409)
T ss_pred cCccEEEEEcCC----Cc----EEEEECCCchHH-HHHHHcCCCccc------CCCCccEeCCCEEEEecCCcCCChhhh
Confidence 456788887431 01 479999999999 999999999999 79999999999999
Q ss_pred -------cCCCeEEeeeceecccCCCcceEEEecc
Q 030679 121 -------KPESWRLACQTIVGNKENSGKVCSRTMF 148 (173)
Q Consensus 121 -------l~eg~RLACQt~v~~~~~~gdv~V~~~p 148 (173)
+.+|||||||+.+. +|++|++..
T Consensus 97 ~~l~~~e~~~g~rLaCq~~~~-----~d~~ie~~~ 126 (409)
T PRK05464 97 SHISKREAKEGWRLSCQVKVK-----QDMKIEVPE 126 (409)
T ss_pred hhcCHhhccCCcEEEeeCEEC-----CCEEEEECc
Confidence 24689999999999 899999863
No 12
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.45 E-value=1e-13 Score=123.39 Aligned_cols=74 Identities=31% Similarity=0.569 Sum_probs=63.8
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE----------------
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE---------------- 120 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~---------------- 120 (173)
.|+|+..++ + .+++.+++|.+|| .+|..+||.+++ +|||+|+||.|+|+
T Consensus 36 d~ti~IN~d---~-----e~~~t~~aG~kLL-~~L~~~gifi~S------aCGGggsC~QCkv~v~~ggge~LpTe~sh~ 100 (410)
T COG2871 36 DITIKINGD---P-----EKTKTVPAGGKLL-GALASSGIFISS------ACGGGGSCGQCKVRVKKGGGEILPTELSHI 100 (410)
T ss_pred ceEEEeCCC---h-----hhceecCCchhHH-HHHHhCCccccc------CCCCCccccccEEEEecCCCccCcchhhhh
Confidence 377776542 1 1578999999999 999999999999 89999999999999
Q ss_pred ----cCCCeEEeeeceecccCCCcceEEEeccHH
Q 030679 121 ----KPESWRLACQTIVGNKENSGKVCSRTMFLL 150 (173)
Q Consensus 121 ----l~eg~RLACQt~v~~~~~~gdv~V~~~p~~ 150 (173)
..+||||+||+.|+ .|+.++++.+.
T Consensus 101 skrea~eG~RLsCQ~~Vk-----~dm~levpEe~ 129 (410)
T COG2871 101 SKREAKEGWRLSCQVNVK-----HDMDLEVPEEV 129 (410)
T ss_pred hhhhhhccceEEEEeccc-----ccceeechHHh
Confidence 57999999999999 89999887653
No 13
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.43 E-value=5.5e-13 Score=99.97 Aligned_cols=56 Identities=36% Similarity=0.574 Sum_probs=46.9
Q ss_pred EEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE-----------------------cCCCeEEeeecee
Q 030679 77 RAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE-----------------------KPESWRLACQTIV 133 (173)
Q Consensus 77 ~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~-----------------------l~eg~RLACQt~v 133 (173)
.+.+..|++|| ++|.++||++++ +|+| |.||||+|+ .+.++||+||+++
T Consensus 16 ~~~~~~g~tiL-e~a~~~gi~i~~------~C~~-g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~ 87 (102)
T COG0633 16 TEAVNEGETLL-EAAERNGIPIEY------ACRG-GACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRV 87 (102)
T ss_pred EEeccCCcHHH-HHHHHCCCccee------cCCC-CccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEE
Confidence 45566699999 999999999999 8997 599999999 2345999999999
Q ss_pred cccCCCcceEEE
Q 030679 134 GNKENSGKVCSR 145 (173)
Q Consensus 134 ~~~~~~gdv~V~ 145 (173)
. +|+.+.
T Consensus 88 ~-----~d~~i~ 94 (102)
T COG0633 88 K-----GDLDIE 94 (102)
T ss_pred C-----CCcceE
Confidence 9 665543
No 14
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.41 E-value=5.4e-13 Score=92.99 Aligned_cols=57 Identities=33% Similarity=0.568 Sum_probs=51.0
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcC------------------CCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKP------------------ESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~------------------eg~RLACQt~v~~~~ 137 (173)
+++++++|++|| ++++++|+.+++ .|++ |.||+|+|++. +++|||||+.+.
T Consensus 10 ~~~~~~~g~~ll-~al~~~g~~~~~------~C~~-g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~--- 78 (84)
T cd00207 10 VEVEVPEGETLL-DAAREAGIDIPY------SCRA-GACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVT--- 78 (84)
T ss_pred EEEEECCCCcHH-HHHHHcCCCccc------CCCC-cCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeC---
Confidence 579999999999 999999999999 7996 89999999942 789999999998
Q ss_pred CCcceEEE
Q 030679 138 NSGKVCSR 145 (173)
Q Consensus 138 ~~gdv~V~ 145 (173)
+|++|+
T Consensus 79 --~~i~v~ 84 (84)
T cd00207 79 --DGLVIE 84 (84)
T ss_pred --CCcEEC
Confidence 788774
No 15
>PRK05713 hypothetical protein; Provisional
Probab=99.39 E-value=8.7e-13 Score=113.36 Aligned_cols=59 Identities=31% Similarity=0.639 Sum_probs=54.2
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE------------------cCCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------------l~eg~RLACQt~v~~~~ 137 (173)
+++++.+|+||| |+|+++||.+++ .|+ .|.||+|+|+ ..+|+||+||+.+.
T Consensus 9 ~~~~~~~g~tlL-~a~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~--- 77 (312)
T PRK05713 9 RRWSVPAGSNLL-DALNAAGVAVPY------SCR-AGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVV--- 77 (312)
T ss_pred eEEEECCCCcHH-HHHHHcCCCCCc------CCC-CcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEEC---
Confidence 579999999999 999999999999 799 6999999999 34679999999999
Q ss_pred CCcceEEEec
Q 030679 138 NSGKVCSRTM 147 (173)
Q Consensus 138 ~~gdv~V~~~ 147 (173)
+|++|+++
T Consensus 78 --~d~~i~~~ 85 (312)
T PRK05713 78 --GDLRVEVF 85 (312)
T ss_pred --CceEEEec
Confidence 99999976
No 16
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.37 E-value=4.1e-13 Score=125.56 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=61.0
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE------------------cCCCeEEeee
Q 030679 69 DDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQ 130 (173)
Q Consensus 69 ~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------------l~eg~RLACQ 130 (173)
|.|+ +.+ ..|++|| +++++.|+.+.+ .|||+|+||+|.|. +..|||||||
T Consensus 8 psgk----r~~-~~g~~il-~aar~~gv~i~s------~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~ 75 (614)
T COG3894 8 PSGK----RGE-DEGTTIL-DAARRLGVYIRS------VCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQ 75 (614)
T ss_pred cCCC----cCC-CCCchHH-HHHHhhCceEee------ecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeee
Confidence 5563 456 8899999 999999999999 89999999999998 4578999999
Q ss_pred ceecccCCCcceEEEeccHHHHHH
Q 030679 131 TIVGNKENSGKVCSRTMFLLNLLA 154 (173)
Q Consensus 131 t~v~~~~~~gdv~V~~~p~~~~~~ 154 (173)
+++. ||++|.+||+.-+-+
T Consensus 76 ~~v~-----gd~~i~ip~es~l~~ 94 (614)
T COG3894 76 AQVL-----GDLVIFIPPESRLER 94 (614)
T ss_pred hhhc-----CceEEEcCchhhHHH
Confidence 9999 999999999976643
No 17
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.37 E-value=1.6e-12 Score=113.33 Aligned_cols=73 Identities=32% Similarity=0.385 Sum_probs=60.8
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE----------------
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE---------------- 120 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~---------------- 120 (173)
+|+++|.+ |. ..++++.+|++|| |+|+++|+.+++ .|+ .|.||+|+++
T Consensus 4 ~v~~~~~~------~~--~~~~~~~~g~tlL-~a~~~~g~~~p~------~C~-~G~Cg~C~~~~~~G~~~~~~~~~~~l 67 (340)
T PRK11872 4 KVALSFAD------GK--TLFFPVGKDELLL-DAALRNGINLPL------DCR-EGVCGTCQGRCESGIYSQDYVDEDAL 67 (340)
T ss_pred EEEEEecC------Cc--EEEEEeCCCCcHH-HHHHHcCCCCcC------CCC-CeECCCCEEEEEeCccccCccccccC
Confidence 67777633 32 1457889999999 999999999999 799 7999999999
Q ss_pred ----cCCCeEEeeeceecccCCCcceEEEeccHH
Q 030679 121 ----KPESWRLACQTIVGNKENSGKVCSRTMFLL 150 (173)
Q Consensus 121 ----l~eg~RLACQt~v~~~~~~gdv~V~~~p~~ 150 (173)
..+|++|+||+++. +|++|+.+.+.
T Consensus 68 ~~~~~~~g~~L~C~~~~~-----~d~~i~~~~~~ 96 (340)
T PRK11872 68 SERDLAQRKMLACQTRVK-----SDAAFYFDFDS 96 (340)
T ss_pred CHHHHhCCeEEEeeCEEC-----CceEEEecCcc
Confidence 34679999999999 99999976553
No 18
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.35 E-value=2.5e-12 Score=110.94 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=56.3
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE--------------------cCCCeEEeeeceecc
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE--------------------KPESWRLACQTIVGN 135 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~--------------------l~eg~RLACQt~v~~ 135 (173)
+++++++|++|| |+|+++||++++ .|+ .|.||+|+|+ ..+|++|+||+++.
T Consensus 12 ~~~~~~~g~tlL-~a~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~- 82 (339)
T PRK07609 12 RQFTAEPDETIL-DAALRQGIHLPY------GCK-NGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPL- 82 (339)
T ss_pred eEEEeCCCCcHH-HHHHHcCCCCCC------CCC-CeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEEC-
Confidence 579999999999 999999999999 798 8999999998 34679999999999
Q ss_pred cCCCcceEEEeccHHH
Q 030679 136 KENSGKVCSRTMFLLN 151 (173)
Q Consensus 136 ~~~~gdv~V~~~p~~~ 151 (173)
+|++|+++....
T Consensus 83 ----~d~~i~~~~~~~ 94 (339)
T PRK07609 83 ----SDLVLEAREVPA 94 (339)
T ss_pred ----CCEEEEeccccc
Confidence 899999875544
No 19
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.24 E-value=1.9e-11 Score=105.80 Aligned_cols=67 Identities=24% Similarity=0.462 Sum_probs=57.3
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE---------------
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE--------------- 120 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~--------------- 120 (173)
..++|++.+ .| +++++++|++|| ++|+++||++++ .|+ .|.||+|+++
T Consensus 247 ~~~~v~~~~-----~~----~~~~~~~~~~lL-~~~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~v~~~~~~~l~ 309 (332)
T PRK10684 247 SGLTFTKLQ-----PA----REFYAPVGTTLL-EALESNKVPVVA------ACR-AGVCGCCKTKVVSGEYTVSSTMTLT 309 (332)
T ss_pred CceEEEEec-----CC----EEEEeCCCChHH-HHHHHcCCCccC------CCC-CcCCCCCEEEEecCcccccccccCC
Confidence 457777753 22 578999999999 999999999999 799 8999999999
Q ss_pred ---cCCCeEEeeeceecccCCCcceEE
Q 030679 121 ---KPESWRLACQTIVGNKENSGKVCS 144 (173)
Q Consensus 121 ---l~eg~RLACQt~v~~~~~~gdv~V 144 (173)
+.+||+|+||+++. +|++|
T Consensus 310 ~~~~~~g~~l~C~~~~~-----~d~~i 331 (332)
T PRK10684 310 PAEIAQGYVLACSCHPQ-----GDLVL 331 (332)
T ss_pred HHHHhCCcEEEeeCEEC-----CCeEE
Confidence 45689999999999 88876
No 20
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.21 E-value=1.6e-11 Score=85.44 Aligned_cols=51 Identities=45% Similarity=0.731 Sum_probs=43.5
Q ss_pred EEEEecCChh-HHHHHHHhC-CCCccccccccccCCCceeecccEEEcC-----------------CCe-EEeeeceec
Q 030679 76 ERAKAISGEK-LLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKP-----------------ESW-RLACQTIVG 134 (173)
Q Consensus 76 ~~vev~~G~t-LLRdall~~-GI~l~~~~~~~~~CGG~G~CGTC~V~l~-----------------eg~-RLACQt~v~ 134 (173)
.++++.+|++ || ++|+++ |+++++ .|+|.+ ||+|+|++. +++ |||||++++
T Consensus 8 ~~~~~~~~~~~ll-~~~~~~~gi~i~~------~C~~g~-Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~rLaCq~~~t 78 (78)
T PF00111_consen 8 VTVEVPPGETLLL-DALERAGGIGIPY------SCGGGG-CGTCRVRVLEGEVQSNETFLEDEELAEGGIRLACQTRVT 78 (78)
T ss_dssp EEEEEETTSBBHH-HHHHHTTTTTSTT------SSSSSS-SSTTEEEEEESEEETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred EEEEeCCCccHHH-HHHHHcCCCCccc------CCCCCc-cCCcEEEEeeCcccCCcccCCHHHHHcCCCcCCcEEEeC
Confidence 6789999999 88 999999 999999 899866 999999932 334 799999874
No 21
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=99.20 E-value=1.9e-11 Score=93.92 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=66.2
Q ss_pred cEEEEEecCCCC-CCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 57 EIELEFIAPRAG-DDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 57 ~I~Vtf~~~~~~-~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
+++|.+.+|+.. ..+.++..+|++.+|+++| ++|....-.+..+++++.+|+ .|.||+|.+.+...-+|||.+.+.+
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~~~tVL-d~L~~Ik~~~D~sLafr~sCr-~giCGsCam~ING~~~LAC~t~v~~ 78 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEPGMTVL-DALNYIKEEQDPSLAFRYSCR-SGICGSCAMRINGRPRLACKTQVDD 78 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGSTSBHH-HHHHHHHHHT-TT--B--SSS-SSSSSTTEEEETTEEEEGGGSBGGG
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCCCCcHH-HHHHHHHhccCCCeEEEecCC-CCCCCCCEEEECCceecceeeEchh
Confidence 467777776432 2566777889999999999 999999889999999999999 6999999999999999999999985
Q ss_pred cCCCc--ceEEEecc
Q 030679 136 KENSG--KVCSRTMF 148 (173)
Q Consensus 136 ~~~~g--dv~V~~~p 148 (173)
..... .++|+.++
T Consensus 79 ~~~~~~~~i~IePL~ 93 (110)
T PF13085_consen 79 LIEKFGNVITIEPLP 93 (110)
T ss_dssp CTTSETBEEEEEEST
T ss_pred ccCCCcceEEEEECC
Confidence 44332 37777653
No 22
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.18 E-value=6.7e-11 Score=102.55 Aligned_cols=55 Identities=25% Similarity=0.488 Sum_probs=48.5
Q ss_pred EEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE------------------cCCCeEEeeeceecccCCC
Q 030679 78 AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKENS 139 (173)
Q Consensus 78 vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------------l~eg~RLACQt~v~~~~~~ 139 (173)
+++++|++|| ++|+++||++++ +|+ .|.||+|+++ +.+|++|+||+++.
T Consensus 277 ~~~~~~~slL-~~~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~----- 343 (352)
T TIGR02160 277 SSLSRDESVL-DAALRARPDLPF------ACK-GGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAYPL----- 343 (352)
T ss_pred EecCCCCcHH-HHHHHcCCCCcC------CCC-CccCCCCEEEEeccccccccccCCCHHHHhCCcEEEeeEEEC-----
Confidence 5688999999 999999999999 799 5999999999 35779999999998
Q ss_pred cc-eEEE
Q 030679 140 GK-VCSR 145 (173)
Q Consensus 140 gd-v~V~ 145 (173)
+| ++|+
T Consensus 344 ~~~~~~~ 350 (352)
T TIGR02160 344 SDKLVVD 350 (352)
T ss_pred CCcEEEe
Confidence 44 7775
No 23
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=99.07 E-value=2.5e-10 Score=99.51 Aligned_cols=103 Identities=17% Similarity=0.306 Sum_probs=76.1
Q ss_pred EEEEEecCCCCCCCCCCeEEEEecC-ChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 030679 58 IELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (173)
Q Consensus 58 I~Vtf~~~~~~~DG~~~~~~vev~~-G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~ 136 (173)
|+|...+|..+....+...+|++.+ |++|| |+|....-..+.+++++.+|+ .|.||+|.+.+...-+|||++.+.+.
T Consensus 46 ~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVL-d~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~ING~p~LAC~t~v~~~ 123 (276)
T PLN00129 46 FQIYRWNPDNPGKPHLQSYKVDLNDCGPMVL-DVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNIDGKNTLACLTKIDRD 123 (276)
T ss_pred EEEEeeCCCCCCCceeEEEEeCCCCCCchHH-HHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEECCcccccccccHhhc
Confidence 5556666654344556666667665 89999 999998888999999999999 69999999999999999999999743
Q ss_pred CCCcceEEEecc--------HHHHHHHHHhhhccc
Q 030679 137 ENSGKVCSRTMF--------LLNLLAFLQKEMRVT 163 (173)
Q Consensus 137 ~~~gdv~V~~~p--------~~~~~~~~~~~~~~~ 163 (173)
.++.++|+.++ ..++-.|.+|--+|.
T Consensus 124 -~~~~i~iePl~~fpVirDLvVD~~~f~~klk~v~ 157 (276)
T PLN00129 124 -ESGPTTITPLPHMFVIKDLVVDMTNFYQQYKSIE 157 (276)
T ss_pred -CCCcEEEEECCCCCeeeecccccHHHHHHHHhcc
Confidence 23567777553 234555665544443
No 24
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=99.03 E-value=3.3e-10 Score=96.27 Aligned_cols=88 Identities=17% Similarity=0.279 Sum_probs=71.4
Q ss_pred cEEEEEecCC-CCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 57 EIELEFIAPR-AGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 57 ~I~Vtf~~~~-~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
+|+|...+|. .+....++..+|++.+|++|| |+|...+-..+.+++++.+|+ .|.||+|.+.+...-+|||++.+.+
T Consensus 6 ~~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvL-daL~~Ik~~~D~sL~fr~sCr-~giCGsCam~ING~~~LAC~t~v~~ 83 (239)
T PRK13552 6 TFNIFRYNPQDPGSKPHMVTYQLEETPGMTLF-IALNRIREEQDPSLQFDFVCR-AGICGSCAMVINGRPTLACRTLTSD 83 (239)
T ss_pred EEEEEeeCCCCCCCCcceEEEEecCCCCCCHH-HHHHHHHhcCCCCeeEeccCC-CCCCCCceeEECCeEhhhhhccHhh
Confidence 4666666653 223456777888999999999 999999888999999999999 7999999999999999999999874
Q ss_pred cCCCcceEEEec
Q 030679 136 KENSGKVCSRTM 147 (173)
Q Consensus 136 ~~~~gdv~V~~~ 147 (173)
. .++.++|+.+
T Consensus 84 ~-~~~~i~iePl 94 (239)
T PRK13552 84 Y-PDGVITLMPL 94 (239)
T ss_pred c-CCCcEEEEEC
Confidence 2 2346777765
No 25
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=98.95 E-value=8.3e-10 Score=94.55 Aligned_cols=104 Identities=19% Similarity=0.314 Sum_probs=80.6
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
-+++|...+|..+ .+.++..+|+..+|++|| |+|+...-+.+.+++++.+|+ .|.||+|.+.+...-||||.+.+.+
T Consensus 3 ~~~~i~R~~p~~~-~p~~~~yev~~~~~~~vL-daL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~ING~prLAC~t~~~~ 79 (234)
T COG0479 3 LKFKIYRYNPDDD-KPYWQTYEVPYDEGMTVL-DALLYIKEEQDPTLSFRRSCR-EGICGSCAMNINGKPRLACKTLMKD 79 (234)
T ss_pred EEEEEEEECCCCC-CcceEEEEecCCCCCcHH-HHHHHHHHhcCCccchhhhcc-CCcCCcceeEECCccccchhchhhh
Confidence 3577877777553 567777777888999999 999999989999999999999 6999999999999999999999984
Q ss_pred cCCCcceEEEecc--------HHHHHHHHHhhhccc
Q 030679 136 KENSGKVCSRTMF--------LLNLLAFLQKEMRVT 163 (173)
Q Consensus 136 ~~~~gdv~V~~~p--------~~~~~~~~~~~~~~~ 163 (173)
.... .++|+.++ ..+|-.|.++--+|.
T Consensus 80 ~~~~-~i~iePL~~fpVIkDLVVD~~~f~~~~~~ik 114 (234)
T COG0479 80 LEEG-VITIEPLPNFPVIRDLVVDMEEFYEKLRKIK 114 (234)
T ss_pred ccCC-ceEEEECCCCCceeeeeeccHHHHHhhhccc
Confidence 4322 56666554 235555655544443
No 26
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.89 E-value=6.6e-09 Score=87.18 Aligned_cols=70 Identities=29% Similarity=0.370 Sum_probs=57.0
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCC-----CceeecccEEEcCCC--eEE
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEKPES--WRL 127 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CG-----G~G~CGTC~V~l~eg--~RL 127 (173)
|..|+|++ || +.+++++|++|| +|++++||++++ .|+ +.|.|+.|.|++... .+.
T Consensus 1 m~~v~i~i-------dg----~~~~~~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~V~v~g~~~~~~ 62 (234)
T PRK07569 1 MSVKTLTI-------DD----QLVSAREGETLL-EAAREAGIPIPT------LCHLDGLSDVGACRLCLVEIEGSNKLLP 62 (234)
T ss_pred CceEEEEE-------CC----EEEEeCCCCHHH-HHHHHcCCCCCc------CcCCCCCCCCCccCCcEEEECCCCcccc
Confidence 56688876 34 469999999999 999999999999 687 679999999997543 457
Q ss_pred eeeceecccCCCcceEEEec
Q 030679 128 ACQTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 128 ACQt~v~~~~~~gdv~V~~~ 147 (173)
||++.+. ..++|+..
T Consensus 63 aC~t~v~-----~Gm~v~t~ 77 (234)
T PRK07569 63 ACVTPVA-----EGMVVQTN 77 (234)
T ss_pred CcCCCCC-----CCCEEEEC
Confidence 9999999 56666543
No 27
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.88 E-value=2.5e-09 Score=90.94 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=66.6
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecC-ChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~-G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
+++|...+|..+..+.+...+|++.+ +++|| |+|.... +.+.+++++.+|+ .|.||+|.+.+...-+|||++.+.+
T Consensus 6 ~~~i~R~~~~~~~~~~~~~y~v~~~~~~~tvl-d~L~~ik-~~d~~l~fr~sCr-~giCGsCa~~iNG~~~LaC~t~~~~ 82 (235)
T PRK12575 6 ILHIYRYDPDDDAAPRMQRYEIAPRAEDRMLL-DVLGRVK-AQDETLSYRRSCR-EGICGSDAMNINGRNGLACLTNMQA 82 (235)
T ss_pred EEEEEeeCCCCCCCceeEEEEecCCCCCCcHH-HHHHHHH-hcCCCeeeeccCC-CCCCCCCeeEECCeEcchhhCcHhH
Confidence 35666666544344556666677665 56899 9999987 7889999999999 6999999999999999999999974
Q ss_pred cCCCcceEEEec
Q 030679 136 KENSGKVCSRTM 147 (173)
Q Consensus 136 ~~~~gdv~V~~~ 147 (173)
. .+.++|+.+
T Consensus 83 ~--~~~i~iePl 92 (235)
T PRK12575 83 L--PREIVLRPL 92 (235)
T ss_pred c--CCCEEEeEC
Confidence 3 245777755
No 28
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.87 E-value=2.4e-09 Score=91.61 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=66.0
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCC-------ccccccccccCCCceeecccEEEcCCCeEEee
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-------LYATYGKVMNCGGGGSCGTCIVEKPESWRLAC 129 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~-------l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLAC 129 (173)
+|+|...++ .+..+.+...+|++.+|++|| |+|....-+ ...+++++.+|+ .|.||+|.+.+...-+|||
T Consensus 7 ~~~i~R~~~-~~~~~~~q~y~v~~~~~~tvL-daL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~ING~p~LAC 83 (249)
T PRK08640 7 RLIIKRQDG-PDSKPYWEEFEIPYRPNMNVI-SALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVINGKPRQAC 83 (249)
T ss_pred EEEEEeeCC-CCCCceeEEEEecCCCCCcHH-HHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEECCccchhh
Confidence 466666665 234456777788888999999 999976542 345589999999 7999999999999999999
Q ss_pred eceecccCCCcceEEEec
Q 030679 130 QTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 130 Qt~v~~~~~~gdv~V~~~ 147 (173)
++.+.+. .+.++|+.+
T Consensus 84 ~t~v~~~--~~~i~iePl 99 (249)
T PRK08640 84 TALIDQL--EQPIRLEPM 99 (249)
T ss_pred hChHHHc--CCcEEEEEC
Confidence 9999532 356777765
No 29
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.85 E-value=1.9e-09 Score=91.72 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=66.9
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~ 136 (173)
+|+|...+++.+..+.++..++++.+|+||| ++|...+-.+..+++++..|+ .|.||+|.|.+....+|||++.+.+.
T Consensus 8 ~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl-~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~InG~~~laC~t~~~~~ 85 (244)
T PRK12385 8 KIEVLRYNPEVDTEPHSQTYEVPYDETTSLL-DALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVNNVPKLACKTFLRDY 85 (244)
T ss_pred EEEEEeeCCCCCCCceeEEEEeeCCCCCcHH-HHHHHHHHhcCCCceeccCCC-CCcCCCCcceECccChhhHhhHHHHc
Confidence 3555555554433345677788888999999 999988877877788888999 59999999998877899999999742
Q ss_pred CCCcceEEEec
Q 030679 137 ENSGKVCSRTM 147 (173)
Q Consensus 137 ~~~gdv~V~~~ 147 (173)
.+.++|+.+
T Consensus 86 --~~~~~iePl 94 (244)
T PRK12385 86 --TGGMKVEAL 94 (244)
T ss_pred --CCCeEEeeC
Confidence 234666654
No 30
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.83 E-value=6.3e-09 Score=75.15 Aligned_cols=66 Identities=27% Similarity=0.435 Sum_probs=45.3
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCC---------ceeecccEEEcCCCe-E
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG---------GGSCGTCIVEKPESW-R 126 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG---------~G~CGTC~V~l~eg~-R 126 (173)
.|+|+| || +.+++++|++|| +||+++|+.++. .|+. .|.|+.|.|++.... .
T Consensus 3 ~v~i~i-------dG----~~v~~~~G~til-~al~~~gi~ip~------~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v 64 (82)
T PF13510_consen 3 MVTITI-------DG----KPVEVPPGETIL-EALLAAGIDIPR------LCYHGRPRGGLCPIGSCRLCLVEVDGEPNV 64 (82)
T ss_dssp EEEEEE-------TT----EEEEEEET-BHH-HHHHHTT--B-E------ETTTS-EEBSSSSSTT-SS-EEEESSEEEE
T ss_pred EEEEEE-------CC----EEEEEcCCCHHH-HHHHHCCCeEEE------eeeccCcccccCCccccceEEEEECCCcce
Confidence 578877 34 579999999999 999999999998 4553 599999999966444 8
Q ss_pred EeeeceecccCCCcceEEE
Q 030679 127 LACQTIVGNKENSGKVCSR 145 (173)
Q Consensus 127 LACQt~v~~~~~~gdv~V~ 145 (173)
.||++.+. ..++|+
T Consensus 65 ~AC~t~v~-----~GM~V~ 78 (82)
T PF13510_consen 65 RACSTPVE-----DGMVVE 78 (82)
T ss_dssp ETTT-B-------TTEEEE
T ss_pred EcccCCCc-----CCcEEE
Confidence 99999999 456654
No 31
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.83 E-value=7.3e-09 Score=94.22 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=63.9
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~ 136 (173)
+++|.+.+++.+ +..++..++++++|++|| |+|++.+.....++.+..+|+ .|.||+|.|++....+|||++.+.
T Consensus 5 ~~~i~r~~~~~~-~~~~~~~~v~~~~~~tvl-~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v~G~~~laC~~~~~-- 79 (486)
T PRK06259 5 TITVKRFDPEKD-EPHFESYEVPVKEGMTVL-DALEYINKTYDANIAFRSSCR-AGQCGSCAVTINGEPVLACKTEVE-- 79 (486)
T ss_pred EEEEEecCCCCC-CceeEEEEEeCCCCChHH-HHHHHhchhcCCCceecCCCC-CCCCCCCEEEECCeEecccccCCC--
Confidence 455555565543 466777788888999999 999976554333344445898 799999999987778999999999
Q ss_pred CCCcceEEEecc
Q 030679 137 ENSGKVCSRTMF 148 (173)
Q Consensus 137 ~~~gdv~V~~~p 148 (173)
.+++|+.+.
T Consensus 80 ---~~~~i~~~~ 88 (486)
T PRK06259 80 ---DGMIIEPLD 88 (486)
T ss_pred ---CCCEEEecC
Confidence 578998774
No 32
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.81 E-value=7.4e-09 Score=89.08 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=62.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecccCCCcceEEEec
Q 030679 71 GSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 71 G~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~~~~gdv~V~~~ 147 (173)
+.+..++|++.++++|| ++|++.+.....+++++..|+ .|.||+|.|.+...-+|||++.+...+..+.++|+.+
T Consensus 17 ~~~q~y~v~~~~~~tvL-d~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~InG~p~laC~t~~~~~~~~~~itiepl 91 (251)
T PRK12386 17 GELQDYTVEVNEGEVVL-DVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEINGRPRLMCMTRMSTFDEDETVTVTPM 91 (251)
T ss_pred CceEEEEEeCCCCCCHH-HHHHHhccccCCCCcccCCCC-CCcCCCCEEEECccEeccHHhHHHHhCCCCeEEEccC
Confidence 46777889999999999 999998888888899999999 7999999999999999999998864332345666644
No 33
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.80 E-value=1.3e-08 Score=89.74 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=76.9
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~ 136 (173)
+++|...++.. +..+...+|++.+|+||| |+|...+++++.++.++-+|+ .|.||+|.|++....+|||.+.+.+.
T Consensus 4 ~~~i~R~~~~~--~p~~~~~~v~~~~~~tvL-~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~inG~~~laC~t~v~~~ 79 (329)
T PRK12577 4 LFKILRQKQNS--APYVQTYTLEVEPGNTIL-DCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRINGRSALACKENVGSE 79 (329)
T ss_pred EEEEEeeCCCC--CCeEEEEEEECCCCChHH-HHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEECCeeecCcccchhhh
Confidence 35555455422 345667788999999999 999999999988788899999 69999999999888899999999742
Q ss_pred C---------CCcceEEEecc--------HHHHHHHHHhhhccc
Q 030679 137 E---------NSGKVCSRTMF--------LLNLLAFLQKEMRVT 163 (173)
Q Consensus 137 ~---------~~gdv~V~~~p--------~~~~~~~~~~~~~~~ 163 (173)
. ..+.++|+.+. ..+|-.|.+|--+|.
T Consensus 80 ~~~~~~~~~~~~~~i~iePl~~~pvikDLvVD~~~~~~k~~~v~ 123 (329)
T PRK12577 80 LARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEAVD 123 (329)
T ss_pred hccccccccCCCCeEEEEECCCCCccccceeccHHHHHHHHhcc
Confidence 1 12567777553 245666666655554
No 34
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.74 E-value=2.2e-08 Score=83.93 Aligned_cols=104 Identities=17% Similarity=0.287 Sum_probs=75.7
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEec-CChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAI-SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~-~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
+|+|.+.+++.+....++.++++++ +|++|| ++|.+.+-.....+.++..|+ .|.||+|.|.+....+|||.+.+.+
T Consensus 1 ~~~v~r~~~~~~~~~~~~~~~v~~~~~~~tvl-~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~vnG~~~laC~t~~~~ 78 (232)
T PRK05950 1 TFKIYRYNPDVDANPRMQTYEVDVDECGPMVL-DALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNINGKNGLACITPISD 78 (232)
T ss_pred CeEEEecCCCCCCCceeEEEEeCCCCCCCHHH-HHHHHhCCccCCcceeeCCCC-CCCCCCCEEEECCcCccchhChHhH
Confidence 4677777766544566778889998 999999 999999855555567777996 6999999999977778999999974
Q ss_pred cCCCcceEEEecc--------HHHHHHHHHhhhccc
Q 030679 136 KENSGKVCSRTMF--------LLNLLAFLQKEMRVT 163 (173)
Q Consensus 136 ~~~~gdv~V~~~p--------~~~~~~~~~~~~~~~ 163 (173)
. ..+.++|+.+. ..++-.|.+|-.+|.
T Consensus 79 ~-~~~~~tiepl~~~~vikDLvvD~~~~~~~~~~~~ 113 (232)
T PRK05950 79 L-KKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIK 113 (232)
T ss_pred c-CCCeEEEEECCCCCeeeeceeehHHHHHHHHhcc
Confidence 4 23456777543 234555555544443
No 35
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=98.73 E-value=1e-08 Score=88.02 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=62.3
Q ss_pred cEEEEEecCCCCCCCCCCeEEEE-ecCChhHHHHHHHhCCCCc----cccccccccCCCceeecccEEEcCCCe------
Q 030679 57 EIELEFIAPRAGDDGSYPVERAK-AISGEKLLRNIMLDNKIEL----YATYGKVMNCGGGGSCGTCIVEKPESW------ 125 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~ve-v~~G~tLLRdall~~GI~l----~~~~~~~~~CGG~G~CGTC~V~l~eg~------ 125 (173)
+++|...++. +..+.+...+|+ +.+|++|| ++|....-.+ ..+++++.+|+ .|.||+|.+.+...-
T Consensus 4 ~~~i~R~~~~-~~~~~~q~y~v~~~~~~~tvL-d~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~ING~p~~~~~~ 80 (250)
T PRK07570 4 TLKIWRQKGP-DDKGKFETYEVDDISPDMSFL-EMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVINGRPHGPDRG 80 (250)
T ss_pred EEEEEecCCC-CCCceeEEEEecCCCCCCcHH-HHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEECCccCCCCcc
Confidence 4566555432 233445556676 66899999 9998664322 23588999999 699999999987776
Q ss_pred EEeeeceecccCCCcceEEEecc
Q 030679 126 RLACQTIVGNKENSGKVCSRTMF 148 (173)
Q Consensus 126 RLACQt~v~~~~~~gdv~V~~~p 148 (173)
||||++.+.+....+.++|+.++
T Consensus 81 ~LAC~t~~~~~~~~~~i~iePl~ 103 (250)
T PRK07570 81 TTTCQLHMRSFKDGDTITIEPWR 103 (250)
T ss_pred cchhhhhhhhcCCCCeEEEEECC
Confidence 99999988643223457777664
No 36
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.69 E-value=4.8e-08 Score=84.75 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=76.2
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
-+++|...+++ .|..++.+++++.+|++|| ++|...+..+..++.++..|+ .|.||.|.|.+....+|||++.+.+
T Consensus 9 ~~~~i~R~~~~--~~~~~~~~~v~~~~~~tvL-d~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~ING~~~laC~t~v~~ 84 (279)
T PRK12576 9 VIFKVKRYDPE--KGSWWQEYKVKVDRFTQVT-EALRRIKEEQDPTLSYRASCH-MAVCGSCGMKINGEPRLACKTLVLD 84 (279)
T ss_pred EEEEEEecCCC--CCCeEEEEEEecCCCCHHH-HHHHHhCCccCCCceecCCCC-CCCCCCCEEEECCcEeccccCcHHH
Confidence 35666655554 3466778889999999999 999999988876788888997 8999999999987789999999974
Q ss_pred cC--CCcceEEEecc--------HHHHHHHHHhhhcc
Q 030679 136 KE--NSGKVCSRTMF--------LLNLLAFLQKEMRV 162 (173)
Q Consensus 136 ~~--~~gdv~V~~~p--------~~~~~~~~~~~~~~ 162 (173)
.. .++.++|+.+. ..++-.|.+|-.+|
T Consensus 85 ~~~~~~~~~tiePl~~~~vikDLvvD~~~~~~k~~~~ 121 (279)
T PRK12576 85 VAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKV 121 (279)
T ss_pred hhcCCCCcEEEEECCCCceeecceechHHHHHHHHhc
Confidence 31 12457777553 23455555554444
No 37
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.55 E-value=5.5e-08 Score=80.84 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=56.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecccCCCcceEEEec
Q 030679 71 GSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 71 G~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~~~~gdv~V~~~ 147 (173)
..+...++++.+|+||| ++|.+.+......++++..|+ .|.||+|.|++...-+|||++.+.+. ...-++|+.+
T Consensus 12 ~~~~~~~v~~~~~~tvl-~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~vnG~~~laC~t~v~~~-g~~~~~iepl 85 (220)
T TIGR00384 12 PHLQSYEVPADEGMTVL-DALNYIKDEQDPSLAFRRSCR-NGICGSCAMNVNGKPVLACKTKVEDL-GQPVMKIEPL 85 (220)
T ss_pred ceeEEEEEeCCCCCcHH-HHHHHHHHhcCCCceeecccC-CCCCCCCeeEECCEEhhhhhChHHHc-CCCcEEEeeC
Confidence 34555677888999999 999998866666677778998 69999999998777889999999841 0112566644
No 38
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.26 E-value=2.4e-06 Score=83.06 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=51.2
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCC-----CceeecccEEEcC-------CCeEEeeeceecccCCCcceE
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEKP-------ESWRLACQTIVGNKENSGKVC 143 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CG-----G~G~CGTC~V~l~-------eg~RLACQt~v~~~~~~gdv~ 143 (173)
+.+++++|++|| ++++++||.+++ .|. +.|.|+.|.|++. .++++||++.+. ..++
T Consensus 9 ~~~~~~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~-----~gm~ 76 (847)
T PRK08166 9 KEYEVNGADNLL-EACLSLGIDIPY------FCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPAT-----DGTF 76 (847)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------cccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCC-----CCCE
Confidence 569999999999 999999999999 897 3699999999963 347899999998 5677
Q ss_pred EEec
Q 030679 144 SRTM 147 (173)
Q Consensus 144 V~~~ 147 (173)
|+..
T Consensus 77 v~t~ 80 (847)
T PRK08166 77 ISID 80 (847)
T ss_pred EEeC
Confidence 7654
No 39
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.17 E-value=5.7e-06 Score=78.54 Aligned_cols=72 Identities=28% Similarity=0.347 Sum_probs=57.8
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCC-----ceeecccEEEcCCCe--EE
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEKPESW--RL 127 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG-----~G~CGTC~V~l~eg~--RL 127 (173)
|..|+|++ || +++++++|+||| ++|+++|+.++. .|.. .|.|+.|.|++.... .+
T Consensus 1 ~~~v~~~i-------dg----~~~~~~~g~ti~-~a~~~~g~~ip~------~c~~~~~~~~g~C~~C~V~v~g~~~~~~ 62 (652)
T PRK12814 1 MNTISLTI-------NG----RSVTAAPGTSIL-EAAASAGITIPT------LCFHQELEATGSCWMCIVEIKGKNRFVP 62 (652)
T ss_pred CCeEEEEE-------CC----EEEEeCCcCcHH-HHHHHcCCcccc------ccCCCCCCCccccceeEEEECCCcceec
Confidence 55678876 34 579999999999 999999999999 7873 799999999975443 67
Q ss_pred eeeceecccCCCcceEEEeccH
Q 030679 128 ACQTIVGNKENSGKVCSRTMFL 149 (173)
Q Consensus 128 ACQt~v~~~~~~gdv~V~~~p~ 149 (173)
||++.+. ..++|+...+
T Consensus 63 aC~t~~~-----~Gm~v~t~~~ 79 (652)
T PRK12814 63 ACSTAVS-----EGMVIETENA 79 (652)
T ss_pred CcCCCCC-----CCCEEEeCcH
Confidence 9999998 4566665433
No 40
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.88 E-value=3.5e-05 Score=68.44 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=55.1
Q ss_pred CCCCcEEEEEecCCCCCCCCCCeEEEEe-cCChhHHHHHHHhCCCCccccccccccCCC-----ceeecccEEEcCCC--
Q 030679 53 PEKPEIELEFIAPRAGDDGSYPVERAKA-ISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEKPES-- 124 (173)
Q Consensus 53 ~pmp~I~Vtf~~~~~~~DG~~~~~~vev-~~G~tLLRdall~~GI~l~~~~~~~~~CGG-----~G~CGTC~V~l~eg-- 124 (173)
+-.|+++|+. || ++|++ ++|+||| +|++++||.|++ .|.- .|.|..|.|++...
T Consensus 64 ~~~~~~~I~I-------DG----k~VeV~~~G~TIL-eAAr~~GI~IPt------LCy~~~L~p~G~CRlClVEVeG~~~ 125 (297)
T PTZ00305 64 EHKPRAIMFV-------NK----RPVEIIPQEENLL-EVLEREGIRVPK------FCYHPILSVAGNCRMCLVQVDGTQN 125 (297)
T ss_pred ccCCceEEEE-------CC----EEEEecCCCChHH-HHHHHcCCCcCc------cccCCCCCCCCccceeEEEECCCcC
Confidence 3457777765 44 57999 8999999 999999999999 6753 47899999997543
Q ss_pred eEEeeeceecccCCCcceEEEe
Q 030679 125 WRLACQTIVGNKENSGKVCSRT 146 (173)
Q Consensus 125 ~RLACQt~v~~~~~~gdv~V~~ 146 (173)
..-||.+.+. .-++|..
T Consensus 126 lv~AC~tpV~-----eGM~V~T 142 (297)
T PTZ00305 126 LVVSCATVAL-----PGMSIIT 142 (297)
T ss_pred cccccCCcCC-----CCCEEEe
Confidence 3459999999 4555654
No 41
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.82 E-value=4.1e-05 Score=75.55 Aligned_cols=64 Identities=25% Similarity=0.331 Sum_probs=50.8
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecccCCCcceEEEe
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKVCSRT 146 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~~~~gdv~V~~ 146 (173)
+++++++|++|| ++++++||.++. +-..-.|...|.|+.|.|++.....+||++.+. .-++|+.
T Consensus 9 ~~v~~~~G~til-~aa~~~gi~iP~-lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~-----dGM~V~T 72 (819)
T PRK08493 9 KECEAQEGEYIL-NVARRNGIFIPA-ICYLSGCSPTLACRLCMVEADGKRVYSCNTKAK-----EGMNILT 72 (819)
T ss_pred EEEEeCCCCHHH-HHHHHcCCcccc-ccccCCCCCCccccceEEEECCEEeccccCCCC-----CCCEEEe
Confidence 579999999999 999999999986 122224566799999999986666899999998 3455554
No 42
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.80 E-value=7.2e-05 Score=63.87 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=52.9
Q ss_pred CCCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeecee
Q 030679 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIV 133 (173)
Q Consensus 54 pmp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v 133 (173)
++.+|+|++++ . .+++++.++++|| ++|+++. .+.+ +| ..|+ .|.||.|.|.+..-...+|.+..
T Consensus 48 ~~~~i~~~VNG-------~--~~~~~v~~~~tLL-d~LR~~l-~ltG--tK-~GC~-~G~CGACTVlVdG~~v~SCl~la 112 (217)
T PRK11433 48 EISPVTLKVNG-------K--TEQLEVDTRTTLL-DALREHL-HLTG--TK-KGCD-HGQCGACTVLVNGRRLNACLTLA 112 (217)
T ss_pred cCceEEEEECC-------E--EEEEecCCCCcHH-HHHHHhc-CCCC--CC-CCCC-CCCcCceEEEECCEEeeeeeeeh
Confidence 34557776643 2 2567899999999 9999753 2222 11 2599 69999999987766788999887
Q ss_pred cccCCCcceEEEec
Q 030679 134 GNKENSGKVCSRTM 147 (173)
Q Consensus 134 ~~~~~~gdv~V~~~ 147 (173)
..-+.....|||=+
T Consensus 113 ~~~~G~~ItTiEGL 126 (217)
T PRK11433 113 VMHQGAEITTIEGL 126 (217)
T ss_pred hhcCCCEEEEeCCc
Confidence 43332344666644
No 43
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.79 E-value=7.8e-05 Score=72.66 Aligned_cols=60 Identities=20% Similarity=0.322 Sum_probs=50.6
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCC-----CceeecccEEEcCCCe--EEeeeceecccCCCcceEEEec
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEKPESW--RLACQTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CG-----G~G~CGTC~V~l~eg~--RLACQt~v~~~~~~gdv~V~~~ 147 (173)
+++++++|++|| +++..+||++++ .|. ..|.|.-|.|++.... +-||.+.+. ..++|+.-
T Consensus 12 ~~~~~~~g~til-~aa~~~gi~ip~------~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~-----~gm~V~t~ 78 (797)
T PRK07860 12 VEVSVPKGTLVI-RAAELLGIQIPR------FCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVT-----DGMVVKTQ 78 (797)
T ss_pred EEEEeCCCChHH-HHHHHcCCCCCe------ecCCCCCCCCcccCccEEEECCCcccccccCCCCC-----CCcEEEeC
Confidence 589999999999 999999999999 786 3699999999975433 459999999 56777763
No 44
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=97.75 E-value=0.00015 Score=63.10 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=64.0
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEe--c-CChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeece
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKA--I-SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev--~-~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~ 132 (173)
.++.|-.-+|+. |..++.....+| . =|.-+| |||.+.+=+++..++|+.+|+ .|.||+|...+..+.-|||-+.
T Consensus 47 KtFeIYRwnPd~-pg~kP~~Q~y~vDL~~CGpMvL-DALiKIKnE~DptLTFRRSCR-EGICGSCAMNI~G~NtLACi~k 123 (288)
T KOG3049|consen 47 KTFEIYRWNPDN-PGDKPHLQTYEVDLNDCGPMVL-DALIKIKNEMDPTLTFRRSCR-EGICGSCAMNINGTNTLACICK 123 (288)
T ss_pred ceEEEEecCCCC-CCCCccceeeeecHHhcchHHH-HHHHHhhcccCCceehhhhhh-ccccccceeccCCCceeEEEEe
Confidence 445565555543 333343344444 3 377788 999999999999999999999 6999999999999999999999
Q ss_pred ecccCCCcceEEEecc
Q 030679 133 VGNKENSGKVCSRTMF 148 (173)
Q Consensus 133 v~~~~~~gdv~V~~~p 148 (173)
+..++ +....|..+|
T Consensus 124 Id~n~-sK~~kIyPLP 138 (288)
T KOG3049|consen 124 IDQNE-SKSTKIYPLP 138 (288)
T ss_pred eccCC-cccceeecCc
Confidence 87433 2334444433
No 45
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.60 E-value=0.00012 Score=70.45 Aligned_cols=59 Identities=24% Similarity=0.301 Sum_probs=49.3
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCC-----CceeecccEEEcCCC---eEEeeeceecccCCCcceEEEe
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEKPES---WRLACQTIVGNKENSGKVCSRT 146 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CG-----G~G~CGTC~V~l~eg---~RLACQt~v~~~~~~gdv~V~~ 146 (173)
+++++++|+||| +|+.++||+|+. .|. -.|.|..|.|++..+ ..-||.+.+. .-++|..
T Consensus 9 ~~v~v~~g~til-~a~~~~gi~IP~------lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~-----~gm~v~T 75 (687)
T PRK09130 9 KEIEVPDGYTLL-QACEAAGAEIPR------FCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVG-----EGMVIFT 75 (687)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCcCc------ccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCC-----CCCEEEe
Confidence 689999999999 999999999999 896 358999999997544 4568999998 4555654
No 46
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.54 E-value=0.00023 Score=66.93 Aligned_cols=59 Identities=25% Similarity=0.343 Sum_probs=50.1
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCC-----CceeecccEEEcCCC---eEEeeeceecccCCCcceEEEe
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEKPES---WRLACQTIVGNKENSGKVCSRT 146 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CG-----G~G~CGTC~V~l~eg---~RLACQt~v~~~~~~gdv~V~~ 146 (173)
+++++++|++|| ++++++||+++. .|. ..|.|..|.|++... ...||++.+. ..++|+.
T Consensus 6 ~~~~~~~g~~il-~a~~~~gi~ip~------~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~-----~gm~v~t 72 (603)
T TIGR01973 6 KELEVPKGTTVL-QACLSAGIEIPR------FCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVT-----DGMKIST 72 (603)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCccc------cCCCCCCCCCCccccCEEEECCCCCCcccccCCCCC-----CCCEEEe
Confidence 689999999999 999999999999 896 468999999997543 4679999999 4566655
No 47
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.53 E-value=0.00016 Score=59.16 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=54.8
Q ss_pred EEEEecCChhHHHHHHHhCCCC-ccccccccccCCCceeecccEEEcCCCeEEeeeceecccCCCcceEEEeccHHHHHH
Q 030679 76 ERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~-l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~~~~gdv~V~~~p~~~~~~ 154 (173)
+++++.++++|| +.|++.|+. ... .|+ .|.||.|.|.+..--..||.+.+..-+-....|||=+....-+.
T Consensus 18 ~~~~~~~~~~Ll-~~LR~~gltgtK~------GC~-~G~CGACtVlvdg~~v~SCl~~a~~~~G~~V~TiEGl~~~~~l~ 89 (159)
T PRK09908 18 FQLHAAPGTPLS-ELLREQGLLSVKQ------GCC-VGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLS 89 (159)
T ss_pred EEEecCCCCcHH-HHHHHcCCCCCCC------CcC-CCCCCCcEEEECCcEeehhHhhHHHhCCCEEEeecCCCCCCCCC
Confidence 568899999999 999987652 333 799 69999999999888899998877644434456777554322334
Q ss_pred HHHhhh
Q 030679 155 FLQKEM 160 (173)
Q Consensus 155 ~~~~~~ 160 (173)
-+|+.+
T Consensus 90 pvQ~Af 95 (159)
T PRK09908 90 HVQQAY 95 (159)
T ss_pred HHHHHH
Confidence 455443
No 48
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.53 E-value=0.00016 Score=69.69 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=49.1
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCC-----ceeecccEEEcCCCe--EEeeeceecccCCCcceEEEe
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEKPESW--RLACQTIVGNKENSGKVCSRT 146 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG-----~G~CGTC~V~l~eg~--RLACQt~v~~~~~~gdv~V~~ 146 (173)
+++++++|++|| ++++++||.+++ .|.- .|.|.-|.|++.... +.||.+.+. ..++|..
T Consensus 9 ~~~~~~~g~~il-~a~~~~g~~ip~------~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~-----~gm~v~t 74 (776)
T PRK09129 9 KKVEVPEGSMVI-EAADKAGIYIPR------FCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVT-----DGMKVFT 74 (776)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------ccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCC-----CCCEEEc
Confidence 579999999999 999999999998 7873 379999999976433 569999999 4556654
No 49
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.46 E-value=0.0002 Score=57.94 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=54.6
Q ss_pred EEEEecCChhHHHHHHHhC-CCCccccccccccCCCceeecccEEEcCCCeEEeeeceecccCCCcceEEEeccHHHHHH
Q 030679 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~-GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~~~~gdv~V~~~p~~~~~~ 154 (173)
++++++++++|| ++|++. |+. + ....|+ .|.||.|.|.+...-+.||.+.+..-+-..-.|||-+....-+.
T Consensus 11 ~~~~~~~~~~Ll-~~LR~~lglt--g---~K~gC~-~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiEgl~~~~~l~ 83 (148)
T TIGR03193 11 REDAVADNMLLV-DYLRDTVGLT--G---TKQGCD-GGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLATNGRLS 83 (148)
T ss_pred EEeecCCCCcHH-HHHHHhcCCC--C---CCCCCC-CCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeCCCCCCCCCC
Confidence 467899999999 999974 432 2 123799 69999999999888899999877643333456777554322344
Q ss_pred HHHhhh
Q 030679 155 FLQKEM 160 (173)
Q Consensus 155 ~~~~~~ 160 (173)
-+|+.|
T Consensus 84 pvq~af 89 (148)
T TIGR03193 84 RLQQAF 89 (148)
T ss_pred HHHHHH
Confidence 466554
No 50
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=97.12 E-value=0.0016 Score=63.60 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=59.0
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCC--CeEEeeeceecccCCCcceEEEeccHHHHH
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPE--SWRLACQTIVGNKENSGKVCSRTMFLLNLL 153 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~e--g~RLACQt~v~~~~~~gdv~V~~~p~~~~~ 153 (173)
++|++++|++|| +|++++||+||+ +=+.=.|+-.|.|..|.|+... ...-||-+.+. ..++|..--+.-|-
T Consensus 9 ~ei~v~~g~tvL-qAa~~aGi~IP~-fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~-----dGM~I~T~s~~vk~ 81 (693)
T COG1034 9 KEIEVPEGETVL-QAAREAGIDIPT-FCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVT-----DGMVISTNSEEVKK 81 (693)
T ss_pred EEEecCCCcHHH-HHHHHcCCCCCc-ccccCCCCcccceeEEEEEecCCCccccccccccC-----CCeEEecCCHHHHH
Confidence 689999999999 999999999988 1111134556999999999765 46889999888 34557665544442
Q ss_pred HHHHhhhccccccC
Q 030679 154 AFLQKEMRVTSLNH 167 (173)
Q Consensus 154 ~~~~~~~~~~~~~~ 167 (173)
+-..-|...-.||
T Consensus 82 -~R~~vmE~LLiNH 94 (693)
T COG1034 82 -AREGVMEFLLINH 94 (693)
T ss_pred -HHHHHHHHHHhcC
Confidence 2233344445566
No 51
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=96.79 E-value=0.0029 Score=51.21 Aligned_cols=75 Identities=16% Similarity=0.304 Sum_probs=52.3
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhC-CCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~-GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
.|+|++++ + ..++.+.++++|| +.|++. |+.-... .|+ .|.||.|.|.+...-..||.+....
T Consensus 3 ~i~f~vNG-------~--~~~~~~~~~~~Ll-~~LR~~~~ltgtK~-----gC~-~G~CGACtVlvdG~~v~SCl~~~~~ 66 (151)
T TIGR03198 3 QFRFTVNG-------Q--AWEVAAVPTTRLS-DLLRKELQLTGTKV-----SCG-IGRCGACSVLIDGKLANACLTMAYQ 66 (151)
T ss_pred cEEEEECC-------E--EEEeecCCCcHHH-HHHHhccCCCCCCC-----CCC-CCcCCccEEEECCcEEechHHHHHH
Confidence 46776643 2 2467788899988 999974 5542221 599 6999999999988788999987754
Q ss_pred cCCCcceEEEec
Q 030679 136 KENSGKVCSRTM 147 (173)
Q Consensus 136 ~~~~gdv~V~~~ 147 (173)
-+-..-.|||=+
T Consensus 67 ~~G~~v~TiEgl 78 (151)
T TIGR03198 67 ADGHEITTIEGI 78 (151)
T ss_pred hcCCEEEecCCc
Confidence 433344566644
No 52
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=96.54 E-value=0.0058 Score=60.85 Aligned_cols=52 Identities=31% Similarity=0.425 Sum_probs=46.6
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCC-----ceeecccEEEcCCCeEEeeeceec
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEKPESWRLACQTIVG 134 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG-----~G~CGTC~V~l~eg~RLACQt~v~ 134 (173)
+++++++|++|| ++++++||++++ .|.- -++|-+|.|++.....-||.+.+.
T Consensus 13 ~~~~v~~G~tiL-~a~~~~gI~iP~------iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~ 69 (978)
T COG3383 13 RSIEVEEGTTIL-RAANRNGIEIPH------ICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVE 69 (978)
T ss_pred eEEecCCChHHH-HHHHhcCCcccc------eeccCCCCcccccceEEEEecCceecccccccc
Confidence 579999999999 999999999999 8863 379999999987777889999998
No 53
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=96.52 E-value=0.0019 Score=55.38 Aligned_cols=44 Identities=30% Similarity=0.711 Sum_probs=38.8
Q ss_pred HHHHHHhCCCC---ccccccccccCCCceeecccEEEcCCCeEEeeec
Q 030679 87 LRNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQT 131 (173)
Q Consensus 87 LRdall~~GI~---l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt 131 (173)
+++.|.+.|++ ++.++.++|.|| .|.||.|+|....|.+++|.-
T Consensus 227 v~~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~~~~~~~~c~~ 273 (289)
T PRK08345 227 VFKELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGTSTSIKYVCKD 273 (289)
T ss_pred HHHHHHHcCCCHHHEEEEehhccccc-CcccCCCccCCCCcceEEeCC
Confidence 44888899996 889999999999 899999999987788899974
No 54
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=96.46 E-value=0.0037 Score=52.08 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=39.0
Q ss_pred HHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeece
Q 030679 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132 (173)
Q Consensus 87 LRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~ 132 (173)
+++.+.+.|++.+-+...+|.|| .|.||.|.|....++++.|.-=
T Consensus 195 ~~~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~~~~~~~~~C~~G 239 (248)
T cd06219 195 VSELTRPYGIPTVVSLNPIMVDG-TGMCGACRVTVGGETKFACVDG 239 (248)
T ss_pred HHHHHHHcCCCEEEEecccccCc-cceeeeEEEEeCCCEEEEeCcC
Confidence 34788899999999999999999 8999999999766678999753
No 55
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=96.45 E-value=0.0021 Score=53.46 Aligned_cols=44 Identities=25% Similarity=0.717 Sum_probs=38.0
Q ss_pred HHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeec
Q 030679 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQT 131 (173)
Q Consensus 87 LRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt 131 (173)
+++++.++|++..-+...+|.|| .|.||+|.|....+.+++|.-
T Consensus 196 v~~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~~~~~~~~C~~ 239 (250)
T PRK00054 196 VVEILKEKKVPAYVSLERRMKCG-IGACGACVCDTETGGKRVCKD 239 (250)
T ss_pred HHHHHHHcCCcEEEEEcccccCc-CcccCcCCcccCCCCEEEeCc
Confidence 44778889998888888899999 799999999977777899964
No 56
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.43 E-value=0.0029 Score=63.50 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=48.9
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecccCCCcceEEEec
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~~~~gdv~V~~~ 147 (173)
+++++.++++|| +.|++ +.+.+ +|.+-|+ .|.||.|.|.+...-..+|.+....-+-..-.|||=+
T Consensus 12 ~~~~~~~~~~l~-~~LR~--~~~~~--~k~g~c~-~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tvegl 77 (956)
T PRK09800 12 QELTVNPGENVQ-KLLFN--MGMHS--VRNSDDG-FGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESL 77 (956)
T ss_pred EEEecCCCCCHH-HHHHH--CCCCc--cccCCCC-cccCCCCEEEECCeEEeHHHHHHHHcCCCEEEecCCc
Confidence 578899999999 99998 44444 2333465 7999999999988889999987764443344667644
No 57
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=96.39 E-value=0.0064 Score=49.81 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=48.1
Q ss_pred EEEEecCChhHHHHHHHh-CCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecccCCCcceEEE
Q 030679 76 ERAKAISGEKLLRNIMLD-NKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKVCSR 145 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~-~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~~~~gdv~V~ 145 (173)
+++++.+++.|| ++|++ .|+.-... .|+ .|.||.|.|.+...-+.||.+-+...+-....|||
T Consensus 13 ~~~~~~p~~~Ll-~~LRd~l~ltgtk~-----GC~-~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiE 76 (156)
T COG2080 13 VELDVDPRTPLL-DVLRDELGLTGTKK-----GCG-HGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIE 76 (156)
T ss_pred EEEEeCCCChHH-HHHHHhcCCCCcCC-----CCC-CccCCceEEEECCeEehHHHHHHHHhCCCeEEEee
Confidence 679999999999 99994 45443332 799 89999999999888899999877544433446666
No 58
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=96.34 E-value=0.004 Score=53.21 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=37.6
Q ss_pred HHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeec
Q 030679 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQT 131 (173)
Q Consensus 87 LRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt 131 (173)
+.+++.+.|++.+.++..+|.|| .|.|+.|.|....++.+.|.-
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG-~G~C~~C~v~~~~~~~~~C~d 239 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDG-TGMCGACRVTVGGETKFACVD 239 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCc-ccccceeEEEECCCEEEEeCC
Confidence 34778899999999999999996 899999999866566888974
No 59
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=95.73 E-value=0.012 Score=48.54 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=36.2
Q ss_pred HHHHHHhC--CCCccccccccccCCCceeecccEEEcCCCeEEeeece
Q 030679 87 LRNIMLDN--KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132 (173)
Q Consensus 87 LRdall~~--GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~ 132 (173)
+++.|.+. ++.++.+...+|.|| .|.||.|.+....+.+++|.--
T Consensus 193 ~~~~l~~~g~~~~~~~s~~~~m~Cg-~G~C~~C~~~~~~~~~~~C~~g 239 (243)
T cd06192 193 VVEALDEWLQLIKASVSNNSPMCCG-IGICGACTIETKHGVKRLCKDG 239 (243)
T ss_pred HHHHHHhhcCCceEEEECCccccCc-cccccceEEEeCCCeEEEeCCC
Confidence 34666665 678899999999999 7999999999666667999753
No 60
>PRK05802 hypothetical protein; Provisional
Probab=95.37 E-value=0.019 Score=50.60 Aligned_cols=45 Identities=29% Similarity=0.552 Sum_probs=36.7
Q ss_pred HHHHh--CCCCccccccccccCCCceeecccEEEcCCC-eEEeeeceec
Q 030679 89 NIMLD--NKIELYATYGKVMNCGGGGSCGTCIVEKPES-WRLACQTIVG 134 (173)
Q Consensus 89 dall~--~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg-~RLACQt~v~ 134 (173)
+.+.+ .+|++..++..+|.|| .|.||.|.|....+ ++..|.+++.
T Consensus 271 ~~l~~~~~~i~~~~Sle~~M~CG-~G~Cg~C~v~~~g~~~~r~Ck~q~~ 318 (320)
T PRK05802 271 EYLDKLNEKIKLSCSNNAKMCCG-EGICGACTVRYGGHKVKRLCKVQVD 318 (320)
T ss_pred HHHhhhcCCceEEEeCCCeeeCc-CccCCeeEEEECCEEEEEEeeeecC
Confidence 44555 7898888999999999 89999999997554 4688988764
No 61
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=95.23 E-value=0.019 Score=47.82 Aligned_cols=44 Identities=18% Similarity=0.543 Sum_probs=37.5
Q ss_pred HHHHHHhCCCCccccccccccCCCceeecccEEEcC---CCeEEeeec
Q 030679 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKP---ESWRLACQT 131 (173)
Q Consensus 87 LRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~---eg~RLACQt 131 (173)
++++|++.|++...+....|.|| .|.||.|.+.-. .+.+++|.-
T Consensus 195 ~~~~L~~~Gv~~~~~~~~~~~~~-~g~c~~c~~~~~~~~~~~~~~c~~ 241 (246)
T cd06218 195 VAELAAERGVPCQVSLEERMACG-IGACLGCVVKTKDDEGGYKRVCKD 241 (246)
T ss_pred HHHHHHhcCCCEEEEecccccCc-cceecccEEEeecCCCccEEEeCc
Confidence 55778999999888889999999 699999999943 678999963
No 62
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=94.96 E-value=0.031 Score=55.46 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=52.9
Q ss_pred EEEecCChhHHHHHHHhC-CCC-ccccccccccCCCceeecccEEEcCCCeEEeeeceecccCCCcceEEEeccHHHHHH
Q 030679 77 RAKAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154 (173)
Q Consensus 77 ~vev~~G~tLLRdall~~-GI~-l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~~~~gdv~V~~~p~~~~~~ 154 (173)
.+++.++++|| +.|++. |+. ... .|+ .|.||.|.|.+...-..+|.+....-+-..-.|||=+.... +.
T Consensus 9 ~~~~~~~~~l~-~~lr~~~~~~~~k~------gc~-~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl~~~~-~~ 79 (848)
T TIGR03311 9 EVDVNEEKKLL-EFLREDLRLTGVKN------GCG-EGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGLTERE-KD 79 (848)
T ss_pred EeeCCCCCcHH-HHHHHhcCCCcCCC------CCC-CCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCCCCCC-CC
Confidence 57889999999 999973 653 444 699 69999999999888899999877644444456676543222 13
Q ss_pred HHHhhh
Q 030679 155 FLQKEM 160 (173)
Q Consensus 155 ~~~~~~ 160 (173)
-+|+.|
T Consensus 80 ~~q~a~ 85 (848)
T TIGR03311 80 VYAWAF 85 (848)
T ss_pred HHHHHH
Confidence 455543
No 63
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.91 E-value=0.027 Score=54.44 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=38.5
Q ss_pred HHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeecee
Q 030679 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIV 133 (173)
Q Consensus 87 LRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v 133 (173)
+.+++.+.|++.+.++..+|.|| .|.||.|.|.....+++.|.-=+
T Consensus 196 v~~~l~~~gv~~~~Sle~~M~CG-~G~C~~C~v~~~~~~~~~C~dGP 241 (752)
T PRK12778 196 VCLLTKKYGIPTIVSLNTIMVDG-TGMCGACRVTVGGKTKFACVDGP 241 (752)
T ss_pred HHHHHHHcCCCEEEeCcccccCc-ccccCcceeEeCCCeEEEECCCC
Confidence 34778899999999999999997 89999999986555689997543
No 64
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=94.80 E-value=0.026 Score=56.85 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=47.8
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecccCCCcceEEEec
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~~~~gdv~V~~~ 147 (173)
+++++.++++|| +.|++.|+. + .|.+.|+ .|.||.|.|.+...-..+|.+....-+-....|||=+
T Consensus 8 ~~~~~~~~~~l~-~~LR~~~l~--~--~k~~~c~-~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl 73 (951)
T TIGR03313 8 QTLECKLGENVQ-TLLFNMGMH--S--VRNSDDG-FGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESL 73 (951)
T ss_pred EEEecCCCCCHH-HHHHHCCCC--C--CcCCCCC-cccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcC
Confidence 567889999999 999996543 2 1222476 7999999999988889999987754433344566643
No 65
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.39 E-value=0.13 Score=51.49 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=54.6
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCcccc-c----cccccCCCceeecccEEEcCCC-----e
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYAT-Y----GKVMNCGGGGSCGTCIVEKPES-----W 125 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~-~----~~~~~CGG~G~CGTC~V~l~eg-----~ 125 (173)
..|+|+| || +.+++.+|+||. .||+.+|+.+-.. . -+-..|. .|.|--|.|.+..+ .
T Consensus 11 ~~~~~~~-------dg----~~~~~~~g~t~a-~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~~~~~~~~ 77 (985)
T TIGR01372 11 RPLRFTF-------DG----KSYSGFAGDTLA-SALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGSGAQREPN 77 (985)
T ss_pred CeEEEEE-------CC----EEeecCCCCHHH-HHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECCCcCCCCC
Confidence 4688888 44 579999999999 9999999875431 1 1127897 48899999998643 3
Q ss_pred EEeeeceecccCCCcceEEEe
Q 030679 126 RLACQTIVGNKENSGKVCSRT 146 (173)
Q Consensus 126 RLACQt~v~~~~~~gdv~V~~ 146 (173)
..||++.+. ..++|+.
T Consensus 78 ~~ac~~~~~-----~gm~~~~ 93 (985)
T TIGR01372 78 TRATTQELY-----DGLVATS 93 (985)
T ss_pred ccceeEEcc-----cCCEEec
Confidence 689999998 4555554
No 66
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=94.12 E-value=0.067 Score=49.81 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=49.9
Q ss_pred EEE-EecCChhHHHHHHHhC-CCC-ccccccccccCCCceeecccEEEc----CC-----CeEEeeeceecccCCCcceE
Q 030679 76 ERA-KAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEK----PE-----SWRLACQTIVGNKENSGKVC 143 (173)
Q Consensus 76 ~~v-ev~~G~tLLRdall~~-GI~-l~~~~~~~~~CGG~G~CGTC~V~l----~e-----g~RLACQt~v~~~~~~gdv~ 143 (173)
+++ ++.++++|| +.|+++ |+. ... .|+ .|.||.|.|.+ +. --.-||.+-+..-+-..-.|
T Consensus 10 ~~~~~~~~~~~ll-~~lR~~~~l~g~k~------gC~-~G~CGaCtv~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 81 (467)
T TIGR02963 10 VTLSDVDPTRTLL-DYLREDAGLTGTKE------GCA-EGDCGACTVVVGELVDGGKLRYRSVNACIQFLPSLDGKAVVT 81 (467)
T ss_pred EEeecCCCCCCHH-HHHHHhcCCCCCCc------ccC-CCCCCceEEEEEecCCCCcccceEEehhhhhHHhcCCCEEEe
Confidence 456 588999999 999974 543 333 699 69999999996 55 46778887665333233466
Q ss_pred EEeccH-HHHHHHHHhhh
Q 030679 144 SRTMFL-LNLLAFLQKEM 160 (173)
Q Consensus 144 V~~~p~-~~~~~~~~~~~ 160 (173)
||=+.. ..-+.-+|+.|
T Consensus 82 vEgl~~~~~~l~~~q~a~ 99 (467)
T TIGR02963 82 VEDLRQPDGRLHPVQQAM 99 (467)
T ss_pred cCCCCCCCCCCCHHHHHH
Confidence 665432 22233355543
No 67
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=93.93 E-value=0.033 Score=47.11 Aligned_cols=40 Identities=28% Similarity=0.694 Sum_probs=32.6
Q ss_pred HHHHHHhCCCC---ccccccccccCCCceeecccEEEcCCCeEEeeec
Q 030679 87 LRNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQT 131 (173)
Q Consensus 87 LRdall~~GI~---l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt 131 (173)
+++.|.+.|++ ++.++..+|.|| .|.||.|+|. ..++|.-
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~----~~~~c~~ 247 (261)
T TIGR02911 205 TVQELLKKGIKEENIWVSYERKMCCG-VGKCGHCKID----DVYVCLD 247 (261)
T ss_pred HHHHHHHcCCCHHHEEEEeccceecc-CcCCCCcccC----CEEEECC
Confidence 34778889995 678889999999 8999999997 2778863
No 68
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=93.92 E-value=0.06 Score=44.23 Aligned_cols=42 Identities=21% Similarity=0.585 Sum_probs=32.6
Q ss_pred HHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeec
Q 030679 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQT 131 (173)
Q Consensus 87 LRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt 131 (173)
++++|.+.|++..-.+...+.|| .|.||.|.|... | .++|.-
T Consensus 182 ~~~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~~-~-~~~c~~ 223 (233)
T cd06220 182 VLEILDERGVRAQFSLERYMKCG-IGICGSCCIDPT-G-LRVCRD 223 (233)
T ss_pred HHHHHHhcCCcEEEEecccccCc-CCCcCccEeccC-C-eEEeCc
Confidence 34778888986555566779999 899999999975 5 578853
No 69
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=93.42 E-value=0.048 Score=35.08 Aligned_cols=27 Identities=33% Similarity=0.989 Sum_probs=19.4
Q ss_pred ccccCCCceeecccEEEcCCC--eEEeeec
Q 030679 104 KVMNCGGGGSCGTCIVEKPES--WRLACQT 131 (173)
Q Consensus 104 ~~~~CGG~G~CGTC~V~l~eg--~RLACQt 131 (173)
.+|.|| -|.|+.|.|...++ +.+.|.-
T Consensus 2 ~~M~CG-~G~C~~C~v~~~~~~~~~~vC~d 30 (40)
T PF10418_consen 2 RRMACG-VGACGGCVVPVKDGDGYKRVCKD 30 (40)
T ss_dssp ---SSS-SSSS-TTEEECSSTTSEEETTTT
T ss_pred CcccCC-CcEeCCcEeeeecCCcCEEEeCc
Confidence 468998 89999999996654 8999964
No 70
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=93.02 E-value=0.06 Score=45.08 Aligned_cols=39 Identities=23% Similarity=0.689 Sum_probs=32.2
Q ss_pred HHHHHHhCCCC---ccccccccccCCCceeecccEEEcCCCeEEeee
Q 030679 87 LRNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQ 130 (173)
Q Consensus 87 LRdall~~GI~---l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQ 130 (173)
++++|++.|++ ++..+...|-|| .|.||.|+|. ..++|.
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~~~~~-~g~c~~c~~~----~~~~~~ 246 (253)
T cd06221 205 VAKELLKLGVPEEQIWVSLERRMKCG-VGKCGHCQIG----PKYVCK 246 (253)
T ss_pred HHHHHHHcCCCHHHEEEehhhccccC-CccccCcccC----CeeEEC
Confidence 34888999997 888888899999 7999999997 255663
No 71
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=92.70 E-value=0.14 Score=51.89 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=37.8
Q ss_pred HHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeecee
Q 030679 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIV 133 (173)
Q Consensus 89 dall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v 133 (173)
+++.+.||+.+-++..+|.|| -|.||.|+|.....++++|.-=+
T Consensus 198 ~~~~~~gi~~~vSle~~M~cG-~G~Cg~C~v~~~~~~~~~C~DGP 241 (1006)
T PRK12775 198 ETTRPFGVKTMVSLNAIMVDG-TGMCGSCRVTVGGEVKFACVDGP 241 (1006)
T ss_pred HHHHHCCCcEEECChhheeCc-cceeCCCEeeeCCceEEEeCCCC
Confidence 667788999998999999998 89999999997667789997544
No 72
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=92.41 E-value=0.13 Score=53.62 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=49.6
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhC-CCC-ccccccccccCCCceeecccEEEcCC----------
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKPE---------- 123 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~-GI~-l~~~~~~~~~CGG~G~CGTC~V~l~e---------- 123 (173)
|.|+|+.++.. +....+.++++|| +.|++. |+. .-. .|+ .|.||.|.|.+..
T Consensus 1 ~~~~~~~Ng~~--------~~~~~~~~~~~ll-~~LR~~~~l~gtk~------gC~-~G~CGaCtV~~~~~~~~~~~~~~ 64 (1330)
T TIGR02969 1 PELLFYVNGRK--------VVEKNVDPETMLL-PYLRKKLRLTGTKY------GCG-GGGCGACTVMISRYNPSTKSIRH 64 (1330)
T ss_pred CcEEEEECCEE--------EEeccCCCCCcHH-HHHHhhcCCCCCCC------CcC-CCCCCCcEEEECCccccccccCC
Confidence 45777664421 1234788999999 999974 543 333 699 6999999999652
Q ss_pred CeEEeeeceecccCCCcceEEEec
Q 030679 124 SWRLACQTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 124 g~RLACQt~v~~~~~~gdv~V~~~ 147 (173)
--.-||.+-+..-+-..-+|||=+
T Consensus 65 ~~v~sCl~~~~~~~g~~v~TvEgl 88 (1330)
T TIGR02969 65 HPVNACLTPICSLYGAAVTTVEGI 88 (1330)
T ss_pred cEEehhHHHHHHhCCCEEEecCCc
Confidence 357888876653332334666644
No 73
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=92.28 E-value=0.062 Score=45.51 Aligned_cols=33 Identities=30% Similarity=0.758 Sum_probs=28.2
Q ss_pred HHHHHHhCCCC---ccccccccccCCCceeecccEEE
Q 030679 87 LRNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (173)
Q Consensus 87 LRdall~~GI~---l~~~~~~~~~CGG~G~CGTC~V~ 120 (173)
.++.|++.|++ +..++..+|.|| .|.||.|+|.
T Consensus 207 ~~~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 207 TVLEFLKRGIKEENIWVSYERKMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHHHcCCCHHHEEEEecceeEcc-CcccCCcccC
Confidence 34778899995 668888999999 8999999987
No 74
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.71 E-value=0.37 Score=48.63 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=35.9
Q ss_pred HHHHHHhCCCCccccccccccCCCceeecccEEEc-CCCe---EEeeece
Q 030679 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK-PESW---RLACQTI 132 (173)
Q Consensus 87 LRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l-~eg~---RLACQt~ 132 (173)
+.+.+.+.|++.+.++..+|.|| -|.||.|.|.. .+|. +..|.-=
T Consensus 862 v~~~l~~~Gv~~~vSlE~~M~CG-~G~C~~C~v~~~~~G~~~~~~vC~DG 910 (944)
T PRK12779 862 VSDLTKPYGVKTVASLNSIMVDA-TGMCGACMVPVTIDGKMVRKHACIDG 910 (944)
T ss_pred HHHHHHHcCCCeEEeecccccCC-CeeeCeeeeeeecCCeeeeeEEECCC
Confidence 34677899999999999999997 89999999973 3442 6788643
No 75
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=88.42 E-value=0.82 Score=44.50 Aligned_cols=61 Identities=23% Similarity=0.393 Sum_probs=46.3
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCC-----ceeecccEEEcC--CCeEEe
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEKP--ESWRLA 128 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG-----~G~CGTC~V~l~--eg~RLA 128 (173)
.+|+| |++ | ..|.+++|+|+| ++....|++++- .|.- .|.|-.|.|+.+ ..-.-|
T Consensus 31 ~~iev-fvd------~----~~v~v~pg~tvl-qac~~~gv~ipr------fcyh~rlsvagncrmclvevekspkpva~ 92 (708)
T KOG2282|consen 31 NKIEV-FVD------D----QSVMVEPGTTVL-QACAKVGVDIPR------FCYHERLSVAGNCRMCLVEVEKSPKPVAA 92 (708)
T ss_pred cceEE-EEC------C----eeEeeCCCcHHH-HHHHHhCCCcch------hhhhhhhhhccceeEEEEEeccCCCcchh
Confidence 66888 553 3 469999999999 999999999998 6752 378999999943 334566
Q ss_pred eeceec
Q 030679 129 CQTIVG 134 (173)
Q Consensus 129 CQt~v~ 134 (173)
|-.-+.
T Consensus 93 campvm 98 (708)
T KOG2282|consen 93 CAMPVM 98 (708)
T ss_pred hccccc
Confidence 766555
No 76
>PLN00192 aldehyde oxidase
Probab=88.21 E-value=0.7 Score=48.40 Aligned_cols=64 Identities=19% Similarity=0.371 Sum_probs=42.5
Q ss_pred EEE-EecCChhHHHHHHHhC-CCC-ccccccccccCCCceeecccEEEc----------CCCeEEeeeceecccCCCcce
Q 030679 76 ERA-KAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEK----------PESWRLACQTIVGNKENSGKV 142 (173)
Q Consensus 76 ~~v-ev~~G~tLLRdall~~-GI~-l~~~~~~~~~CGG~G~CGTC~V~l----------~eg~RLACQt~v~~~~~~gdv 142 (173)
.++ ++.++++|| +.|+++ |+. .-. .|+ .|.||.|.|.+ ..--.-||.+-+..-+-..-+
T Consensus 15 ~~~~~~~p~~~Ll-~~LR~~~~ltgtK~------gC~-~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~ 86 (1344)
T PLN00192 15 FELSSVDPSTTLL-EFLRTQTPFKSVKL------GCG-EGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNGCSIT 86 (1344)
T ss_pred EEeccCCCCCcHH-HHHHHhhCCCCcCC------CCC-CCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCCCEEE
Confidence 345 588999999 999974 543 222 699 69999999995 233567887665432222346
Q ss_pred EEEec
Q 030679 143 CSRTM 147 (173)
Q Consensus 143 ~V~~~ 147 (173)
|||=+
T Consensus 87 TvEgl 91 (1344)
T PLN00192 87 TSEGL 91 (1344)
T ss_pred eecCc
Confidence 66643
No 77
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=74.13 E-value=2.8 Score=39.58 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=40.8
Q ss_pred EEecCChhHHHHHHH-hCCCCccccccccccCCCceeecccEEE----cCCC-----eEEeeeceecccCCCcceEEEe
Q 030679 78 AKAISGEKLLRNIML-DNKIELYATYGKVMNCGGGGSCGTCIVE----KPES-----WRLACQTIVGNKENSGKVCSRT 146 (173)
Q Consensus 78 vev~~G~tLLRdall-~~GI~l~~~~~~~~~CGG~G~CGTC~V~----l~eg-----~RLACQt~v~~~~~~gdv~V~~ 146 (173)
-.+.+.+||| |.|+ +.+..=-.. -|. .|-||.|.|- ..++ ..=||-..+...+-..-++||-
T Consensus 21 ~~v~P~~TlL-d~LR~d~~ltGtKE-----GCA-EGDCGACTVlVgrl~~g~~l~yeSVNACirfl~sL~G~hvvTvE~ 92 (493)
T COG4630 21 SDVPPTTTLL-DYLRLDRRLTGTKE-----GCA-EGDCGACTVLVGRLVDGGSLRYESVNACIRFLGSLDGTHVVTVEH 92 (493)
T ss_pred ecCCcchHHH-HHHHHhcccccccc-----ccc-CCCcCceEEEEEeecCCCceeeeehhHHHHHHhhcCCceEEEehh
Confidence 4678999999 9998 666642222 498 7999999998 2333 2447877765333333456653
No 78
>PLN02906 xanthine dehydrogenase
Probab=56.52 E-value=7.9 Score=40.73 Aligned_cols=57 Identities=25% Similarity=0.421 Sum_probs=36.5
Q ss_pred hhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCC-----C-----eEEeeeceecccCCCcceEEEec
Q 030679 84 EKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPE-----S-----WRLACQTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 84 ~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~e-----g-----~RLACQt~v~~~~~~gdv~V~~~ 147 (173)
++|| +.|++.| +.+ -...|+ .|.||.|.|.+.+ | -.-||.+-+..-+-..-+|||=+
T Consensus 2 ~~ll-~~LR~~~--l~g---~k~gC~-~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl 68 (1319)
T PLN02906 2 QTLL-EYLRDLG--LTG---TKLGCG-EGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGI 68 (1319)
T ss_pred CcHH-HHHHhCC--CCC---CCCCcC-CCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCC
Confidence 5677 9999744 333 123699 6999999999652 3 56788776653333344666644
No 79
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=49.80 E-value=8.3 Score=39.98 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=31.9
Q ss_pred hCCCCccccccccccCCCceeecccEEEcC--CCeEEeeec
Q 030679 93 DNKIELYATYGKVMNCGGGGSCGTCIVEKP--ESWRLACQT 131 (173)
Q Consensus 93 ~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~--eg~RLACQt 131 (173)
+.+++.-.+++..|-|+-+|.||.|++... +.+++||--
T Consensus 959 ~~~~~~i~svns~M~c~m~giC~qC~~~~~G~~k~vfaC~~ 999 (1028)
T PRK06567 959 GENTEIIVSVNSSMQCMMKGICGQCIQKVKGEQKYIFACSQ 999 (1028)
T ss_pred cCCCcEEEecCcHHHHHhhhhhhhheEEecCeeEEEEEecC
Confidence 347787888888999998899999999943 446699976
No 80
>PRK01777 hypothetical protein; Validated
Probab=41.28 E-value=53 Score=24.56 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=21.5
Q ss_pred CeEEEEecCChhHHHHHHHhCCCCccc
Q 030679 74 PVERAKAISGEKLLRNIMLDNKIELYA 100 (173)
Q Consensus 74 ~~~~vev~~G~tLLRdall~~GI~l~~ 100 (173)
....+++++|+|+- |++...||....
T Consensus 17 ~~~~l~vp~GtTv~-dal~~sgi~~~~ 42 (95)
T PRK01777 17 YLQRLTLQEGATVE-EAIRASGLLELR 42 (95)
T ss_pred EEEEEEcCCCCcHH-HHHHHcCCCccC
Confidence 34678999999977 999999997664
No 81
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=40.71 E-value=36 Score=24.27 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=20.5
Q ss_pred CCCCCCeEEEEecCChhHHHHHHH----hCCCCccc
Q 030679 69 DDGSYPVERAKAISGEKLLRNIML----DNKIELYA 100 (173)
Q Consensus 69 ~DG~~~~~~vev~~G~tLLRdall----~~GI~l~~ 100 (173)
|||.. ..|.+.+|+++. |+|. ..|++...
T Consensus 7 Png~~--t~V~vrpg~ti~-d~L~~~c~kr~l~~~~ 39 (72)
T cd01760 7 PNGQR--TVVPVRPGMSVR-DVLAKACKKRGLNPEC 39 (72)
T ss_pred cCCCe--EEEEECCCCCHH-HHHHHHHHHcCCCHHH
Confidence 77764 579999999975 7665 45665444
No 82
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=35.66 E-value=24 Score=23.70 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHhCCCCccc
Q 030679 69 DDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (173)
Q Consensus 69 ~DG~~~~~~vev~~G~tLLRdall~~GI~l~~ 100 (173)
|||+ ..+++.|.|.+ |++...+-.+..
T Consensus 6 pdG~----~~~~~~g~T~~-d~A~~I~~~l~~ 32 (60)
T PF02824_consen 6 PDGS----IKELPEGSTVL-DVAYSIHSSLAK 32 (60)
T ss_dssp TTSC----EEEEETTBBHH-HHHHHHSHHHHH
T ss_pred CCCC----eeeCCCCCCHH-HHHHHHCHHHHh
Confidence 7885 57899999988 999988777766
No 83
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=33.01 E-value=51 Score=24.16 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=13.2
Q ss_pred EEEEecCChhHHHHHHHh
Q 030679 76 ERAKAISGEKLLRNIMLD 93 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~ 93 (173)
..|++.+|++ |||+|.+
T Consensus 12 T~V~vrpG~t-l~daL~K 28 (74)
T cd01816 12 TVVNVRPGMT-LRDALAK 28 (74)
T ss_pred EEEEecCCcC-HHHHHHH
Confidence 4699999999 5577664
No 84
>smart00455 RBD Raf-like Ras-binding domain.
Probab=28.38 E-value=67 Score=22.48 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=20.7
Q ss_pred CCCCCCeEEEEecCChhHH---HHHHHhCCCCccc
Q 030679 69 DDGSYPVERAKAISGEKLL---RNIMLDNKIELYA 100 (173)
Q Consensus 69 ~DG~~~~~~vev~~G~tLL---Rdall~~GI~l~~ 100 (173)
|||.. ..|.+.+|++|. +.++...|+++..
T Consensus 7 P~~~~--~~V~vrpg~tl~e~L~~~~~kr~l~~~~ 39 (70)
T smart00455 7 PDNQR--TVVKVRPGKTVRDALAKALKKRGLNPEC 39 (70)
T ss_pred CCCCE--EEEEECCCCCHHHHHHHHHHHcCCCHHH
Confidence 77754 678999999964 3344567776555
No 85
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=28.05 E-value=91 Score=20.68 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=18.5
Q ss_pred EEEecCChhHHHHHHHhCCCCccc
Q 030679 77 RAKAISGEKLLRNIMLDNKIELYA 100 (173)
Q Consensus 77 ~vev~~G~tLLRdall~~GI~l~~ 100 (173)
..++++|.||. +++...|++...
T Consensus 9 ~~~~~~~~tl~-~lL~~l~~~~~~ 31 (66)
T PRK05659 9 PRELPDGESVA-ALLAREGLAGRR 31 (66)
T ss_pred EEEcCCCCCHH-HHHHhcCCCCCe
Confidence 57888999977 999998886544
No 86
>PRK07440 hypothetical protein; Provisional
Probab=27.56 E-value=1.2e+02 Score=21.07 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.6
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccc
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~ 100 (173)
.++|++.+ +.+++.+|.+|. +.|.+.+++...
T Consensus 4 ~m~i~vNG-----------~~~~~~~~~tl~-~lL~~l~~~~~~ 35 (70)
T PRK07440 4 PITLQVNG-----------ETRTCSSGTSLP-DLLQQLGFNPRL 35 (70)
T ss_pred ceEEEECC-----------EEEEcCCCCCHH-HHHHHcCCCCCe
Confidence 47787754 357888999977 999888876443
No 87
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=24.85 E-value=82 Score=23.34 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=19.1
Q ss_pred eEEEEecCChhHHHHHHHhCCCCccc
Q 030679 75 VERAKAISGEKLLRNIMLDNKIELYA 100 (173)
Q Consensus 75 ~~~vev~~G~tLLRdall~~GI~l~~ 100 (173)
...+++++|+|+. +|+...|+.-..
T Consensus 15 ~~~l~vp~GtTv~-~Ai~~Sgi~~~~ 39 (84)
T PF03658_consen 15 ILTLEVPEGTTVA-QAIEASGILEQF 39 (84)
T ss_dssp EEEEEEETT-BHH-HHHHHHTHHHH-
T ss_pred EEEEECCCcCcHH-HHHHHcCchhhC
Confidence 4578999999987 999999996433
No 88
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=24.29 E-value=98 Score=22.54 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=21.2
Q ss_pred CCCCCCCeEEEEecCChhH---HHHHHHhCCCCccc
Q 030679 68 GDDGSYPVERAKAISGEKL---LRNIMLDNKIELYA 100 (173)
Q Consensus 68 ~~DG~~~~~~vev~~G~tL---LRdall~~GI~l~~ 100 (173)
.|||.- ..|.+.+|++| |-.++...|+.+..
T Consensus 6 LPdg~~--T~V~vrpG~ti~d~L~kllekRgl~~~~ 39 (73)
T cd01817 6 LPDGST--TVVPTRPGESIRDLLSGLCEKRGINYAA 39 (73)
T ss_pred CCCCCe--EEEEecCCCCHHHHHHHHHHHcCCChhH
Confidence 378864 56899999985 22445567877655
No 89
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=22.98 E-value=39 Score=23.43 Aligned_cols=32 Identities=22% Similarity=0.511 Sum_probs=20.3
Q ss_pred HHHHHHhCCCCccccccccccCCCceeecccEEE
Q 030679 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE 120 (173)
Q Consensus 87 LRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~ 120 (173)
+|+++.++|..-...+.+...|| ..||+|+-.
T Consensus 14 I~~ai~~~g~~s~~~l~~~~~~g--~~CG~C~~~ 45 (64)
T PRK10509 14 IRQAVRQFHPQSFQQLRKFVPVG--NQCGKCIRA 45 (64)
T ss_pred HHHHHHHcCCCCHHHHHHhcCCC--CCccchHHH
Confidence 44777777765333344455666 689999754
No 90
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=21.35 E-value=1.5e+02 Score=20.63 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=17.0
Q ss_pred CCCCCCeEEEEecCChhHHHHHHH----hCCCCccc
Q 030679 69 DDGSYPVERAKAISGEKLLRNIML----DNKIELYA 100 (173)
Q Consensus 69 ~DG~~~~~~vev~~G~tLLRdall----~~GI~l~~ 100 (173)
|||.. ..|.+.+|+++ ||+|. ..|+.+..
T Consensus 8 P~~q~--t~V~vrpg~ti-~d~L~~~~~kr~L~~~~ 40 (71)
T PF02196_consen 8 PNGQR--TVVQVRPGMTI-RDALSKACKKRGLNPEC 40 (71)
T ss_dssp TTTEE--EEEEE-TTSBH-HHHHHHHHHTTT--CCC
T ss_pred CCCCE--EEEEEcCCCCH-HHHHHHHHHHcCCCHHH
Confidence 67754 56899999995 36554 45555444
No 91
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=20.73 E-value=1.8e+02 Score=19.88 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=25.1
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCc
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIEL 98 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l 98 (173)
|..++|++++.. ...++++++|.++. +.+.+.+++.
T Consensus 2 ~~mm~v~vng~~-------~~~~~~~~~~~tv~-~ll~~l~~~~ 37 (70)
T PRK08364 2 MLMIRVKVIGRG-------IEKEIEWRKGMKVA-DILRAVGFNT 37 (70)
T ss_pred ceEEEEEEeccc-------cceEEEcCCCCcHH-HHHHHcCCCC
Confidence 445788776531 12468889999966 9998887754
No 92
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=20.06 E-value=43 Score=25.81 Aligned_cols=11 Identities=55% Similarity=1.150 Sum_probs=9.1
Q ss_pred cCCCceeecccEEE
Q 030679 107 NCGGGGSCGTCIVE 120 (173)
Q Consensus 107 ~CGG~G~CGTC~V~ 120 (173)
.|= -||||+|.
T Consensus 66 gCl---ECGTCRvl 76 (99)
T COG2440 66 GCL---ECGTCRVL 76 (99)
T ss_pred Cee---eccceeEe
Confidence 565 79999998
Done!