Query 030679
Match_columns 173
No_of_seqs 200 out of 1118
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 04:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bt6_A Adrenodoxin 1; rutheniu 99.8 2.7E-19 9.1E-24 131.7 6.9 75 58-147 7-108 (108)
2 3hui_A Ferredoxin; cytochrome 99.7 2.3E-18 7.7E-23 132.4 8.1 76 56-149 20-124 (126)
3 2y5c_A Adrenodoxin-like protei 99.7 2.3E-18 7.8E-23 127.1 7.8 77 58-149 6-107 (109)
4 3lxf_A Ferredoxin; iron, iron- 99.7 2E-18 6.9E-23 127.5 7.0 73 59-149 2-103 (104)
5 3n9z_C Adrenodoxin; cytochrome 99.7 4.5E-19 1.6E-23 135.7 -0.2 80 56-150 4-110 (123)
6 3ah7_A [2Fe-2S]ferredoxin; [2F 99.7 1.4E-17 4.7E-22 123.4 7.4 79 55-149 1-103 (113)
7 2wlb_A ETP1-FD, electron trans 99.7 5.1E-17 1.7E-21 118.3 8.3 73 57-147 3-103 (103)
8 1uwm_A Ferredoxin VI, FDVI; el 99.7 3.4E-17 1.2E-21 119.8 6.7 70 69-149 8-104 (106)
9 1xlq_A Putidaredoxin, PDX; [2F 99.7 6.7E-17 2.3E-21 118.3 7.4 70 69-149 8-104 (106)
10 1i7h_A Ferredoxin; 2Fe-2S,elec 99.7 1.1E-16 3.7E-21 118.4 6.9 78 55-148 1-102 (111)
11 1b9r_A Protein (terpredoxin); 99.7 3.7E-17 1.2E-21 119.5 3.5 75 59-148 2-103 (105)
12 1frr_A Ferredoxin I; electron 99.6 8.1E-16 2.8E-20 109.9 5.9 62 76-150 13-92 (95)
13 1czp_A Ferredoxin I; [2Fe-2S] 99.6 7.9E-16 2.7E-20 111.3 5.7 63 76-151 16-96 (98)
14 1iue_A Ferredoxin; electron tr 99.6 1.8E-15 6.1E-20 109.7 7.1 64 76-152 14-95 (98)
15 1a70_A Ferredoxin; iron-sulfur 99.6 1.3E-15 4.3E-20 110.3 6.0 62 76-150 14-93 (97)
16 1awd_A Ferredoxin; electron tr 99.6 1.2E-15 4.1E-20 109.6 5.4 62 76-150 12-91 (94)
17 1wri_A Ferredoxin II, ferredox 99.6 1.3E-15 4.3E-20 109.5 4.8 61 76-150 13-91 (93)
18 1frd_A Heterocyst [2Fe-2S] fer 99.6 3.1E-15 1.1E-19 107.8 6.8 62 76-150 16-95 (98)
19 1l5p_A Ferredoxin; [2Fe-2S] cl 99.6 4E-15 1.4E-19 107.1 7.1 53 76-135 12-84 (93)
20 1jq4_A Methane monooxygenase c 99.6 4.3E-16 1.5E-20 112.5 1.2 60 76-148 17-96 (98)
21 1doi_A 2Fe-2S ferredoxin; halo 99.5 1.7E-14 5.7E-19 110.8 3.5 70 55-147 27-116 (128)
22 3zyy_X Iron-sulfur cluster bin 99.5 4.9E-14 1.7E-18 132.6 6.5 75 55-150 1-93 (631)
23 1krh_A Benzoate 1,2-dioxygenas 99.5 6.7E-14 2.3E-18 118.0 6.7 61 76-149 16-98 (338)
24 2pia_A Phthalate dioxygenase r 99.3 1.2E-12 4.2E-17 110.4 6.7 67 56-145 236-320 (321)
25 1kf6_B Fumarate reductase iron 98.9 7.8E-10 2.7E-14 90.4 5.4 88 56-147 6-93 (243)
26 2bs2_B Quinol-fumarate reducta 98.9 8.1E-10 2.8E-14 90.4 5.4 88 57-147 6-94 (241)
27 2wdq_B Succinate dehydrogenase 98.9 9.8E-10 3.4E-14 89.5 5.6 88 57-147 4-94 (238)
28 2h88_B Succinate dehydrogenase 98.8 3.9E-09 1.3E-13 87.5 5.3 90 55-147 11-102 (252)
29 3vr8_B Iron-sulfur subunit of 98.8 1.3E-08 4.5E-13 87.4 7.5 92 54-148 34-127 (282)
30 3i9v_3 NADH-quinone oxidoreduc 98.4 6.5E-07 2.2E-11 84.8 7.6 61 76-148 9-97 (783)
31 3c8y_A Iron hydrogenase 1; dit 98.3 6.9E-07 2.4E-11 82.2 7.3 61 76-148 9-76 (574)
32 1t3q_A Quinoline 2-oxidoreduct 98.3 4.7E-07 1.6E-11 71.9 4.4 52 76-135 21-74 (168)
33 1rm6_C 4-hydroxybenzoyl-COA re 98.1 1.5E-06 5.1E-11 68.9 3.1 53 76-135 14-67 (161)
34 3hrd_D Nicotinate dehydrogenas 97.9 5.8E-06 2E-10 66.0 3.9 52 76-135 15-68 (160)
35 1n62_A Carbon monoxide dehydro 97.9 7.3E-06 2.5E-10 65.6 4.3 53 76-135 15-68 (166)
36 1ffv_A CUTS, iron-sulfur prote 97.9 4.4E-06 1.5E-10 66.7 2.6 53 76-135 15-68 (163)
37 1vlb_A Aldehyde oxidoreductase 96.9 0.00058 2E-08 66.3 4.6 65 55-135 1-66 (907)
38 1dgj_A Aldehyde oxidoreductase 96.9 0.00035 1.2E-08 67.9 2.4 66 76-147 13-79 (907)
39 2w3s_A Xanthine dehydrogenase; 96.6 0.0008 2.7E-08 60.9 2.5 65 76-147 12-81 (462)
40 3nvw_A Xanthine dehydrogenase/ 96.3 0.00092 3.1E-08 53.6 0.7 73 57-145 4-88 (164)
41 1y56_A Hypothetical protein PH 95.3 0.028 9.6E-07 49.6 6.3 67 55-134 13-80 (493)
42 1ep3_B Dihydroorotate dehydrog 95.1 0.0071 2.4E-07 48.8 1.8 43 87-131 206-251 (262)
43 2gag_A Heterotetrameric sarcos 94.2 0.06 2.1E-06 51.9 5.9 68 54-134 19-99 (965)
44 3kwl_A Uncharacterized protein 93.6 0.05 1.7E-06 49.6 3.9 76 57-148 26-103 (514)
45 3unc_A Xanthine dehydrogenase/ 85.9 0.46 1.6E-05 48.1 3.6 48 79-134 19-78 (1332)
46 3u7z_A Putative metal binding 77.4 2.5 8.6E-05 31.1 4.0 39 55-100 6-44 (101)
47 3zyv_A AOH1; oxidoreductase, m 65.3 7.9 0.00027 39.2 5.6 52 54-120 6-58 (1335)
48 2l05_A Serine/threonine-protei 44.7 18 0.0006 26.6 3.1 17 76-93 30-46 (95)
49 2l32_A Small archaeal modifier 41.4 25 0.00086 23.8 3.4 35 57-100 2-36 (74)
50 1wwt_A Threonyl-tRNA synthetas 40.4 64 0.0022 21.5 5.4 35 55-100 9-44 (88)
51 1rrb_A RAF-1 RBD, RAF proto-on 40.3 17 0.00059 27.2 2.6 17 76-93 31-47 (107)
52 2bb6_A TCII, TC II, transcobal 33.4 45 0.0015 29.9 4.6 36 56-95 315-350 (414)
53 3ny5_A Serine/threonine-protei 31.4 29 0.00099 25.5 2.5 31 54-93 12-42 (96)
54 1c1y_B Proto-onkogene serine/t 30.3 28 0.00095 24.6 2.2 17 76-93 14-30 (77)
55 1wxm_A A-RAF proto-oncogene se 29.5 35 0.0012 24.6 2.6 29 56-93 8-36 (86)
56 2kmm_A Guanosine-3',5'-BIS(dip 26.3 69 0.0023 20.3 3.5 27 69-100 8-34 (73)
57 2pmv_A Gastric intrinsic facto 22.7 46 0.0016 29.7 2.7 18 76-94 315-332 (399)
58 3hvz_A Uncharacterized protein 21.7 90 0.0031 21.3 3.5 27 69-100 13-39 (78)
No 1
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.78 E-value=2.7e-19 Score=131.70 Aligned_cols=75 Identities=27% Similarity=0.533 Sum_probs=60.5
Q ss_pred EEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCcc--ccccccccCCCceeecccEEE---------------
Q 030679 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELY--ATYGKVMNCGGGGSCGTCIVE--------------- 120 (173)
Q Consensus 58 I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~--~~~~~~~~CGG~G~CGTC~V~--------------- 120 (173)
++|+|.. +||. .++|++.+|++|| ++|+++||+++ + +|||.|.||||+|+
T Consensus 7 ~~V~~~~----~~g~--~~~v~~~~g~tLL-~aa~~~gi~i~~~~------~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~ 73 (108)
T 2bt6_A 7 ITVHFIN----RDGE--TLTTKGKIGDSLL-DVVVQNNLDIDGFG------ACEGTLACSTCHLIFEQHIFEKLEAITDE 73 (108)
T ss_dssp EEEEEEC----TTSC--EEEEEEETTCBHH-HHHHHTTCCCTTTT------TTSSSSSBSTTEEECCHHHHTTSCCCCHH
T ss_pred EEEEEEC----CCCC--EEEEEECCCChHH-HHHHHcCCCCCccc------CCCCCcCcCCCEEEECccccccCCCCCHH
Confidence 4555553 4664 3689999999999 99999999999 8 89999999999999
Q ss_pred ----------cCCCeEEeeeceecccCCCcceEEEec
Q 030679 121 ----------KPESWRLACQTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 121 ----------l~eg~RLACQt~v~~~~~~gdv~V~~~ 147 (173)
+.+|||||||+++..+. .+++|++|
T Consensus 74 E~~~L~~~~~~~~g~rLaCq~~~~~d~--d~~~V~~p 108 (108)
T 2bt6_A 74 ENDMLDLAYGLTDRSRLGCQICLTKAM--DNMTVRVP 108 (108)
T ss_dssp HHHHHTTCTTCCTTEEEGGGCBCCGGG--TTEEEECC
T ss_pred HHHHHhCcccCCCCcEeeEEEEecCCC--CCEEEEcC
Confidence 34679999999998211 25888864
No 2
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.75 E-value=2.3e-18 Score=132.42 Aligned_cols=76 Identities=25% Similarity=0.453 Sum_probs=63.8
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCC-ccccccccccCCCceeecccEEE--------------
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVE-------------- 120 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~-l~~~~~~~~~CGG~G~CGTC~V~-------------- 120 (173)
..++|+|.+ +||. .++|++.+|++|| ++|+++||+ +++ .|+|.|.||||+|+
T Consensus 20 ~M~~Vt~~~----~~G~--~~~v~~~~G~tLL-~aa~~~gi~gi~~------~C~G~G~CgtC~v~v~~G~~~~l~~~~~ 86 (126)
T 3hui_A 20 HMAKINFVD----HTGE--TRTVEVEEGATVM-EAAIRNAIPGVEA------ECGGACACATCHVYVDEAWREKVGGPSP 86 (126)
T ss_dssp SEEEEEEEC----TTSC--EEEEEEETTSBHH-HHHHTTTCTTCCC------TTSSSSCCSTTEEEECGGGHHHHCCCCH
T ss_pred CceEEEEEe----CCCC--EEEEEECCCCcHH-HHHHHcCCCCCcc------CCCCCCCCCCCEEEECCCcccccCCCCH
Confidence 445555654 5664 3689999999999 999999999 999 89999999999999
Q ss_pred -----------cCCCeEEeeeceecccCCCcc---eEEEeccH
Q 030679 121 -----------KPESWRLACQTIVGNKENSGK---VCSRTMFL 149 (173)
Q Consensus 121 -----------l~eg~RLACQt~v~~~~~~gd---v~V~~~p~ 149 (173)
+.+|||||||+++. +| ++|++++.
T Consensus 87 ~E~~~L~~~~e~~~g~RLaCQ~~~~-----~dldgl~V~lp~~ 124 (126)
T 3hui_A 87 MEEDMLDFGYDVRPNSRLSCQIKVS-----NELDGLIVTTPER 124 (126)
T ss_dssp HHHHHHTTSSSCCTTEEEGGGCBCC-----GGGTTEEEECCSC
T ss_pred HHhhhcCchhhccCCeEEeeeCEEC-----cCCCcEEEEecCc
Confidence 34689999999998 56 99999865
No 3
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=127.10 Aligned_cols=77 Identities=19% Similarity=0.351 Sum_probs=62.2
Q ss_pred EEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE-----------------
Q 030679 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE----------------- 120 (173)
Q Consensus 58 I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~----------------- 120 (173)
++|+|.. +||. .+++++++|++|| ++++++||++++ .|+|.|.||||+|+
T Consensus 6 ~~v~~~~----~~g~--~~~~~~~~g~tlL-~aa~~~gi~i~~------~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~ 72 (109)
T 2y5c_A 6 VNVVFVD----RSGQ--RIPVSGRVGDNVL-HLAQRHGVDLEG------ACEASLACSTCHVYVSEDHLDLLPPPEERED 72 (109)
T ss_dssp EEEEEEC----TTSC--EEEEEEETTCBHH-HHHHHTTCCCCC------TTSSSSSCCTTEEEECHHHHTTSCCCCHHHH
T ss_pred EEEEEEc----CCCC--EEEEEECCCCcHH-HHHHHcCCCCCc------CCCCCcCcCccEEEECCcchhhcCCCCHHHH
Confidence 5566654 5664 2579999999999 999999999999 89999999999999
Q ss_pred --------cCCCeEEeeeceecccCCCcceEEEeccH
Q 030679 121 --------KPESWRLACQTIVGNKENSGKVCSRTMFL 149 (173)
Q Consensus 121 --------l~eg~RLACQt~v~~~~~~gdv~V~~~p~ 149 (173)
+.+|||||||+++..+. .+++|+++++
T Consensus 73 ~~L~~~~~~~~g~rLaCq~~~~~d~--~~~~v~ip~~ 107 (109)
T 2y5c_A 73 DMLDMAPLLQENSRLGCQIVLTPEL--EGAEFTLPKI 107 (109)
T ss_dssp HHHHTSTTCCTTEEEGGGCBCCGGG--TTCEEECCSC
T ss_pred HHHhccccCCCCcEeeEEeEEecCC--CeEEEEecCC
Confidence 35789999999998211 1399998754
No 4
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.74 E-value=2e-18 Score=127.48 Aligned_cols=73 Identities=30% Similarity=0.469 Sum_probs=62.9
Q ss_pred EEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCC-ccccccccccCCCceeecccEEE-----------------
Q 030679 59 ELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVE----------------- 120 (173)
Q Consensus 59 ~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~-l~~~~~~~~~CGG~G~CGTC~V~----------------- 120 (173)
+|+|++ +||. .+++++.+|++|| ++|+++||+ +++ .|+|.|.||||+|+
T Consensus 2 ~vt~~~----~~G~--~~~~~~~~g~tll-~a~~~~gi~~i~~------~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~ 68 (104)
T 3lxf_A 2 AILVTT----RDGT--RTEIQAEPGLSLM-EALRDAGIDELLA------LCGGCCSCATCHVLVAPAFADRLPALSGDEN 68 (104)
T ss_dssp EEEEEC----TTSC--EEEEECCTTSBHH-HHHHHTTCTTCCC------TTCSSSSCSTTEEEECGGGGGGSCCCCHHHH
T ss_pred EEEEEe----CCCC--EEEEEECCCChHH-HHHHHcCCCCCCc------CCCCCCCCCCCEEEECCcccccCCCCCHHHH
Confidence 456665 5775 3689999999999 999999999 999 89999999999999
Q ss_pred --------cCCCeEEeeeceecccCCCcc---eEEEeccH
Q 030679 121 --------KPESWRLACQTIVGNKENSGK---VCSRTMFL 149 (173)
Q Consensus 121 --------l~eg~RLACQt~v~~~~~~gd---v~V~~~p~ 149 (173)
+.+|||||||+++. +| ++|++|++
T Consensus 69 ~~L~~~~~~~~g~rLaCq~~~~-----~dl~gl~v~ip~~ 103 (104)
T 3lxf_A 69 DLLDSSDHRTPHSRLSCQITIN-----DKLEGLEVEIAPE 103 (104)
T ss_dssp HHHHTSTTCCTTEEEGGGCBCC-----GGGTTCEEEECCC
T ss_pred HHhccccccCCCcEEEeeCEEc-----cCCCCEEEEecCC
Confidence 34689999999998 66 99999864
No 5
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.71 E-value=4.5e-19 Score=135.66 Aligned_cols=80 Identities=25% Similarity=0.495 Sum_probs=17.5
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCcc--ccccccccCCCceeecccEEE-------------
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELY--ATYGKVMNCGGGGSCGTCIVE------------- 120 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~--~~~~~~~~CGG~G~CGTC~V~------------- 120 (173)
..++|+|++ +||.. ++|++.+|++|| ++++++||+++ + +|||.|.||||||+
T Consensus 4 ~~v~Vtf~~----~~G~~--~~v~~~~G~tLl-~aa~~~gi~i~g~~------~CgG~g~CgtC~v~v~~~~~~~l~~~~ 70 (123)
T 3n9z_C 4 DKITVHFIN----RDGET--LTTKGKVGDSLL-DVVVENNLDIDGFG------ACEGTLACSTCHLIFEDHIYEKLDAIT 70 (123)
T ss_dssp ----------------------------------------------C------TTCSSSSCSTTBC--------------
T ss_pred CcEEEEEEe----CCCCE--EEEEECCCCcHH-HHHHHcCCCCCcCC------CCCCCCEeCCCeeEEeccccccCCCCC
Confidence 446666765 56642 679999999999 99999999999 7 89999999999997
Q ss_pred ------------cCCCeEEeeeceecccCCCcceEEEeccHH
Q 030679 121 ------------KPESWRLACQTIVGNKENSGKVCSRTMFLL 150 (173)
Q Consensus 121 ------------l~eg~RLACQt~v~~~~~~gdv~V~~~p~~ 150 (173)
+.+++|||||+++..+ ..+++|++|+..
T Consensus 71 ~~E~~~L~~~~~~~~~~RLaCQ~~v~~~--ld~l~V~ip~~~ 110 (123)
T 3n9z_C 71 DEENDMLDLAYGLTDRSRLGCQICLTKS--MDNMTVRVPETV 110 (123)
T ss_dssp CHHHHHHCC--------CBCC---------------------
T ss_pred hHHHhhhcccccccCCeEEeeEeEEccC--CCCEEEEECccc
Confidence 3467999999999821 138999987765
No 6
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.71 E-value=1.4e-17 Score=123.40 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=62.4
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEc-------------
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------- 121 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l------------- 121 (173)
|++|+|...+ +..++| +++++++|++|| ++|+++||++++ .|+|.|.||+|+|++
T Consensus 1 M~~vt~~~~~-g~~~~~----~~v~~~~g~tlL-~aa~~~Gi~i~~------~C~g~G~CgtC~v~v~~G~~~~~~~~~~ 68 (113)
T 3ah7_A 1 MPLVTFLPHE-KFCPEG----LTVEVKPGTNIL-ELAHDHHIEMES------ACGGVKACTTCHCIVRKGFDSLEEADEL 68 (113)
T ss_dssp CCEEEECCBT-TTBTTC----EEEECCTTCBHH-HHHHHTTCCCCC------TTCSSSSCSTTEEEEEESGGGSCCCCHH
T ss_pred CCEEEEEcCC-CcCCCC----eEEEECCCCcHH-HHHHHcCCCCCc------CCCCCCCcCCCEEEEcCCcccCCCCCHH
Confidence 6666664321 112344 689999999999 999999999999 899999999999991
Q ss_pred -----------CCCeEEeeeceecccCCCcceEEEeccH
Q 030679 122 -----------PESWRLACQTIVGNKENSGKVCSRTMFL 149 (173)
Q Consensus 122 -----------~eg~RLACQt~v~~~~~~gdv~V~~~p~ 149 (173)
.+|||||||+++.. +|++|+++.+
T Consensus 69 e~~~L~~~~~~~~g~rLaCq~~~~~----~dl~v~~~~~ 103 (113)
T 3ah7_A 69 EEDMLDKAWGLEAQSRLGCQVFVAD----EDLTIEIPKY 103 (113)
T ss_dssp HHHHHTTSTTCCTTEEEGGGCBCCS----SCEEEECCSC
T ss_pred HHHhhhcccccCCCcEEeeeCEEeC----CCEEEEECch
Confidence 35689999999972 5899998753
No 7
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.69 E-value=5.1e-17 Score=118.35 Aligned_cols=73 Identities=27% Similarity=0.510 Sum_probs=60.8
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE----------------
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE---------------- 120 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~---------------- 120 (173)
+++|+|.. ++|. .+++++.+|++|| ++|+++|+++++ .|+|.|.||+|+|+
T Consensus 3 ~~~v~~~~----~~g~--~~~~~~~~g~tlL-~a~~~~gi~i~~------~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E 69 (103)
T 2wlb_A 3 GIKVFFVT----PEGR--EIMIEGNEGDSIL-DLAHANNIDLEG------ACEGSVACSTCHVIVDPEHYELLDPPEEDE 69 (103)
T ss_dssp CEEEEEEC----TTCC--EEEEEECTTCBHH-HHHHHTTCCCCC------TTTTSSCCSTTEEEECHHHHHHSCCCCHHH
T ss_pred ceEEEEEe----CCCC--EEEEEECCCCHHH-HHHHHcCCCcCc------CCCCCCCcCCCEEEECCCchhccCCCCHHH
Confidence 45666653 4553 2679999999999 999999999999 89999999999999
Q ss_pred ---------cCCCeEEeeeceecccCCCcc---eEEEec
Q 030679 121 ---------KPESWRLACQTIVGNKENSGK---VCSRTM 147 (173)
Q Consensus 121 ---------l~eg~RLACQt~v~~~~~~gd---v~V~~~ 147 (173)
+.+|||||||+++. +| ++|++|
T Consensus 70 ~~~L~~~~~~~~g~rLaCq~~~~-----~d~~~l~v~lp 103 (103)
T 2wlb_A 70 EDMLDLAFGLEETSRLGCQVLLR-----KDLDGIRVRIP 103 (103)
T ss_dssp HHHHTTBTTCCTTEEEGGGCBCC-----GGGTTEEEECC
T ss_pred HHHHhcccCCCCCcEeeEeeEeC-----CCCCcEEEEcC
Confidence 23679999999999 67 898864
No 8
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.69 E-value=3.4e-17 Score=119.81 Aligned_cols=70 Identities=24% Similarity=0.400 Sum_probs=58.2
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHhCCCC-ccccccccccCCCceeecccEEE-------------------------cC
Q 030679 69 DDGSYPVERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVE-------------------------KP 122 (173)
Q Consensus 69 ~DG~~~~~~vev~~G~tLLRdall~~GI~-l~~~~~~~~~CGG~G~CGTC~V~-------------------------l~ 122 (173)
++|. .+++++.+|++|| ++|+++||+ +++ .|+|.|.||||+|+ +.
T Consensus 8 ~~g~--~~~~~~~~g~tlL-~aa~~~gi~~i~~------~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~ 78 (106)
T 1uwm_A 8 HNGT--RHEVEAKPGLTVM-EAARDNGVPGIDA------DCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPN 78 (106)
T ss_dssp TTCC--EEEEECCTTSBHH-HHHHTTTCTTCCC------TTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCC
T ss_pred CCCC--EEEEEECCCCcHH-HHHHHcCCCCccc------CCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccC
Confidence 4563 3689999999999 999999999 999 89999999999998 22
Q ss_pred -CCeEEeeeceecccCCCcceEEEeccH
Q 030679 123 -ESWRLACQTIVGNKENSGKVCSRTMFL 149 (173)
Q Consensus 123 -eg~RLACQt~v~~~~~~gdv~V~~~p~ 149 (173)
+|||||||+++..+. .+++|++++.
T Consensus 79 ~~g~rLaCq~~~~~d~--~~l~v~~p~~ 104 (106)
T 1uwm_A 79 PATSRLTCQIKVTSLL--DGLVVHLPEK 104 (106)
T ss_dssp TTTEEEGGGCBCCGGG--TTEEEECCSC
T ss_pred CCCcEecccCEEccCC--CCEEEEecCC
Confidence 789999999998211 1699998764
No 9
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.68 E-value=6.7e-17 Score=118.25 Aligned_cols=70 Identities=27% Similarity=0.473 Sum_probs=58.1
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHhCCCC-ccccccccccCCCceeecccEEE-------------------------c-
Q 030679 69 DDGSYPVERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVE-------------------------K- 121 (173)
Q Consensus 69 ~DG~~~~~~vev~~G~tLLRdall~~GI~-l~~~~~~~~~CGG~G~CGTC~V~-------------------------l- 121 (173)
++|. .+++++.+|++|| ++|+++||+ +++ .|+|.|.||||+|+ +
T Consensus 8 ~~g~--~~~~~~~~g~tlL-eaa~~~gi~~i~~------~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~ 78 (106)
T 1xlq_A 8 HDGT--RRELDVADGVSLM-QAAVSNGIYDIVG------DCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAEL 78 (106)
T ss_dssp TTSC--EEEEECCTTCBHH-HHHHHTTCTTSCC------TTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCC
T ss_pred CCCC--EEEEEECCCCcHH-HHHHHcCCCCCCc------CCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccC
Confidence 4563 3689999999999 999999999 999 89999999999999 2
Q ss_pred CCCeEEeeeceecccCCCcceEEEeccH
Q 030679 122 PESWRLACQTIVGNKENSGKVCSRTMFL 149 (173)
Q Consensus 122 ~eg~RLACQt~v~~~~~~gdv~V~~~p~ 149 (173)
.+|+|||||+++..+. .+++|++++.
T Consensus 79 ~~g~rLaCq~~~~~d~--~~l~v~~p~~ 104 (106)
T 1xlq_A 79 KPNSRLCCQIIMTPEL--DGIVVDVPDR 104 (106)
T ss_dssp CTTEEEGGGCBCCGGG--TTEEEECCSC
T ss_pred CCCcEeeeeeEeecCC--CCEEEEecCc
Confidence 5679999999998211 1699998653
No 10
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.66 E-value=1.1e-16 Score=118.40 Aligned_cols=78 Identities=28% Similarity=0.365 Sum_probs=60.7
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEc-------------
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------- 121 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l------------- 121 (173)
|++|+|...+ ...++| +++++.+|++|| ++|+++|+++++ .|+|.|.||+|+|++
T Consensus 1 M~~i~~~~~~-g~~~~~----~~~~~~~g~tlL-~a~~~~gi~i~~------~C~~~G~Cg~C~v~v~~G~~~~~~~~~~ 68 (111)
T 1i7h_A 1 MPKIVILPHQ-DLCPDG----AVLEANSGETIL-DAALRNGIEIEH------ACEKSCACTTCHCIVREGFDSLPESSEQ 68 (111)
T ss_dssp -CEEEECCBT-TTBTTC----EEEECCTTCBHH-HHHHHTTCCCCC------TTSSSSCCSTTEEEEEECGGGSCCCCHH
T ss_pred CCEEEEEeCC-CcCCCC----eEEEeCCCCcHH-HHHHHcCCCCcc------cCCCCCcCCCCEEEEccCcccCCCCCHH
Confidence 5666654321 112344 689999999999 999999999999 798899999999991
Q ss_pred -----------CCCeEEeeeceecccCCCcceEEEecc
Q 030679 122 -----------PESWRLACQTIVGNKENSGKVCSRTMF 148 (173)
Q Consensus 122 -----------~eg~RLACQt~v~~~~~~gdv~V~~~p 148 (173)
.+++|||||+++.. +|++|++++
T Consensus 69 e~~~L~~~~~~~~g~rLaCq~~~~~----~dl~v~~~~ 102 (111)
T 1i7h_A 69 EDDMLDKAWGLEPESRLSCQARVTD----EDLVVEIPR 102 (111)
T ss_dssp HHHHHTTCTTCCTTEEETTTCBCCS----SCEEEECCS
T ss_pred HHHHhhhccccCCCcEEEEEEEEeC----CCEEEEECh
Confidence 14789999999941 699999875
No 11
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.65 E-value=3.7e-17 Score=119.48 Aligned_cols=75 Identities=25% Similarity=0.516 Sum_probs=59.9
Q ss_pred EEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCC-ccccccccccCCCceeecccEEEc----------------
Q 030679 59 ELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVEK---------------- 121 (173)
Q Consensus 59 ~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~-l~~~~~~~~~CGG~G~CGTC~V~l---------------- 121 (173)
+|+|.. ++|. .+++++.+|++|| ++|+++||+ +++ .|+|.|.||||+|++
T Consensus 2 ~V~~~~----~~g~--~~~~~~~~g~tlL-~aa~~~gi~~i~~------~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~ 68 (105)
T 1b9r_A 2 RVVFID----EQSG--EYAVDAQDGQSLM-EVATQNGVPGIVA------ECGGSCVCATCRIEIEDAWVEIVGEANPDEN 68 (105)
T ss_dssp EEEECC----TTTS--CEEEECCTTCCTT-HHHHHHTCCCCCC------SSTTSSCCCCCCCEECTTTHHHHTCCCTTHH
T ss_pred EEEEEe----CCCC--EEEEEECCCChHH-HHHHHcCCCCcCc------CCCCCCCcCcCEEEECCcccccCCCCCHHHH
Confidence 455543 4553 2689999999999 999999999 999 899999999999992
Q ss_pred ----------CCCeEEeeeceecccCCCcceEEEecc
Q 030679 122 ----------PESWRLACQTIVGNKENSGKVCSRTMF 148 (173)
Q Consensus 122 ----------~eg~RLACQt~v~~~~~~gdv~V~~~p 148 (173)
.+|||||||+++..+. .+++|++++
T Consensus 69 ~~L~~~~~~~~~g~rLaCq~~~~~~~--~~l~v~~p~ 103 (105)
T 1b9r_A 69 DLLQSTGEPMTAGTRLSCQVFIDPSM--DGLIVRVPL 103 (105)
T ss_dssp HHHHTSCCCCCTTBSCGGGCCCCTTS--TTEEEECCS
T ss_pred HHhhcccccCCCCcEeeeeCEecCCC--CcEEEEecC
Confidence 2458999999998211 179999865
No 12
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.60 E-value=8.1e-16 Score=109.86 Aligned_cols=62 Identities=19% Similarity=0.348 Sum_probs=55.4
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEc------------------CCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l------------------~eg~RLACQt~v~~~~ 137 (173)
+++++++|++|| ++|+++||++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 13 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~~~--- 81 (95)
T 1frr_A 13 FTLDVPEGTTIL-DAAEEAGYDLPF------SCR-AGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPE--- 81 (95)
T ss_dssp EEEEECTTCCHH-HHHHHTTCCCCC------SSS-SSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES---
T ss_pred EEEEeCCCCcHH-HHHHHcCCCCCC------CCC-CcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECEEC---
Confidence 579999999999 999999999999 798 79999999993 2569999999999
Q ss_pred CCcceEEEeccHH
Q 030679 138 NSGKVCSRTMFLL 150 (173)
Q Consensus 138 ~~gdv~V~~~p~~ 150 (173)
+|++|+++++.
T Consensus 82 --~~~~v~~~~~~ 92 (95)
T 1frr_A 82 --SDLVIETHKEE 92 (95)
T ss_dssp --SCEEEECCCTT
T ss_pred --CCEEEEEcchh
Confidence 89999987643
No 13
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.60 E-value=7.9e-16 Score=111.33 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=56.3
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEc------------------CCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l------------------~eg~RLACQt~v~~~~ 137 (173)
+++++.+|++|| ++|+++|+++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 16 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~--- 84 (98)
T 1czp_A 16 HEIEVPDDEYIL-DAAEEQGYDLPF------SCR-AGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPT--- 84 (98)
T ss_dssp EEEEEETTSCHH-HHHHHTTCCCCC------SSS-SSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES---
T ss_pred EEEEeCCCCCHH-HHHHHcCCCccC------CCC-CCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeCEEC---
Confidence 579999999999 999999999999 798 89999999992 2679999999999
Q ss_pred CCcceEEEeccHHH
Q 030679 138 NSGKVCSRTMFLLN 151 (173)
Q Consensus 138 ~~gdv~V~~~p~~~ 151 (173)
+|++|+++++..
T Consensus 85 --~d~~v~~~~~~~ 96 (98)
T 1czp_A 85 --SDVVIQTHKEED 96 (98)
T ss_dssp --SCEEEECCCTTT
T ss_pred --CCEEEEeccccc
Confidence 899999887543
No 14
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.59 E-value=1.8e-15 Score=109.67 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=57.2
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEc------------------CCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l------------------~eg~RLACQt~v~~~~ 137 (173)
+++++++|++|| ++|+++|+++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 14 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~--- 82 (98)
T 1iue_A 14 KKIECNEDEYIL-DASERQNVELPY------SCR-GGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPK--- 82 (98)
T ss_dssp EEEEEETTSCHH-HHHHHTTCCCCC------SSC-SSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES---
T ss_pred EEEEeCCCCcHH-HHHHHcCCCCCC------CCC-CCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECEEC---
Confidence 579999999999 999999999999 798 89999999992 3679999999999
Q ss_pred CCcceEEEeccHHHH
Q 030679 138 NSGKVCSRTMFLLNL 152 (173)
Q Consensus 138 ~~gdv~V~~~p~~~~ 152 (173)
+|++|+++++...
T Consensus 83 --~d~~i~~~~~~~~ 95 (98)
T 1iue_A 83 --SDCVIETHKEDEL 95 (98)
T ss_dssp --SCEEEECCCHHHH
T ss_pred --CCeEEEeCChHhh
Confidence 8999999886543
No 15
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.59 E-value=1.3e-15 Score=110.26 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=55.8
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEc------------------CCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l------------------~eg~RLACQt~v~~~~ 137 (173)
+++++.+|++|| ++|+++|+++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 14 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~--- 82 (97)
T 1a70_A 14 VEFQCPDDVYIL-DAAEEEGIDLPY------SCR-AGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPV--- 82 (97)
T ss_dssp EEEEEETTSCHH-HHHHHTTCCCCC------SSS-SSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEES---
T ss_pred EEEEeCCCCcHH-HHHHHcCCCccc------CCC-CcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECEEC---
Confidence 579999999999 999999999999 798 89999999992 2568999999999
Q ss_pred CCcceEEEeccHH
Q 030679 138 NSGKVCSRTMFLL 150 (173)
Q Consensus 138 ~~gdv~V~~~p~~ 150 (173)
+|++|+++++.
T Consensus 83 --~d~~v~~~~~~ 93 (97)
T 1a70_A 83 --SDVTIETHKKE 93 (97)
T ss_dssp --SCEEEECCCGG
T ss_pred --CCEEEEeCchh
Confidence 89999988754
No 16
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.58 E-value=1.2e-15 Score=109.64 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=56.1
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEc------------------CCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l------------------~eg~RLACQt~v~~~~ 137 (173)
+++++.+|++|| ++|+++|+++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 12 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~--- 80 (94)
T 1awd_A 12 ETIECPEDTYIL-DAAEEAGLDLPY------SCR-AGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPT--- 80 (94)
T ss_dssp EEEECCTTSCHH-HHHHHTTCCCCC------SSS-SSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES---
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEEC---
Confidence 579999999999 999999999999 798 89999999992 3679999999999
Q ss_pred CCcceEEEeccHH
Q 030679 138 NSGKVCSRTMFLL 150 (173)
Q Consensus 138 ~~gdv~V~~~p~~ 150 (173)
+|++|+++++.
T Consensus 81 --~d~~i~~~~~~ 91 (94)
T 1awd_A 81 --SDVTILTHQEA 91 (94)
T ss_dssp --SCEEEECCCGG
T ss_pred --CCEEEEecchh
Confidence 89999998764
No 17
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.57 E-value=1.3e-15 Score=109.53 Aligned_cols=61 Identities=25% Similarity=0.421 Sum_probs=54.9
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE------------------cCCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE------------------KPESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~------------------l~eg~RLACQt~v~~~~ 137 (173)
+++++.+|++|| ++|+++| ++++ .|+ .|.||+|+|+ +.+||||+||+++.
T Consensus 13 ~~~~~~~g~tlL-~a~~~~g-~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~~~--- 80 (93)
T 1wri_A 13 ITFDVEPGERLI-DIGSEKA-DLPL------SCQ-AGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPE--- 80 (93)
T ss_dssp EEEEECTTSCHH-HHHHHHS-CCCC------SSS-SSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES---
T ss_pred EEEEECCCCcHH-HHHHHCc-CCCC------CCC-CCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCEEC---
Confidence 579999999999 9999999 9999 798 8999999999 23689999999999
Q ss_pred CCcceEEEeccHH
Q 030679 138 NSGKVCSRTMFLL 150 (173)
Q Consensus 138 ~~gdv~V~~~p~~ 150 (173)
+|++|+++++.
T Consensus 81 --~d~~v~~~~~~ 91 (93)
T 1wri_A 81 --SDVVIETHKED 91 (93)
T ss_dssp --SCEEEECCCGG
T ss_pred --CCEEEEecccc
Confidence 89999988754
No 18
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.57 E-value=3.1e-15 Score=107.80 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=55.4
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEc------------------CCCeEEeeeceecccC
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK------------------PESWRLACQTIVGNKE 137 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l------------------~eg~RLACQt~v~~~~ 137 (173)
+++++++|++|| ++|+++||++++ .|+ .|.||+|+|++ .+|+|||||+++.
T Consensus 16 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~~~~--- 84 (98)
T 1frd_A 16 TTIEIDEETTIL-DGAEENGIELPF------SCH-SGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPR--- 84 (98)
T ss_dssp EEEEEETTSCHH-HHHHHTTCCCCC------SSS-SSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGCEES---
T ss_pred EEEEeCCCCcHH-HHHHHcCCCccc------CCC-CCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeECEEC---
Confidence 579999999999 999999999999 798 89999999993 1569999999999
Q ss_pred CCcceEEEeccHH
Q 030679 138 NSGKVCSRTMFLL 150 (173)
Q Consensus 138 ~~gdv~V~~~p~~ 150 (173)
+|++|+++.+.
T Consensus 85 --~d~~v~~~~~~ 95 (98)
T 1frd_A 85 --SNCTIKTHQEP 95 (98)
T ss_dssp --SSEEEECCCGG
T ss_pred --CCEEEEecchh
Confidence 89999987653
No 19
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.57 E-value=4e-15 Score=107.08 Aligned_cols=53 Identities=25% Similarity=0.592 Sum_probs=48.5
Q ss_pred EEEEecCChhHHHHHHHhCCCC-ccccccccccCCCceeecccEEE-------------------cCCCeEEeeeceecc
Q 030679 76 ERAKAISGEKLLRNIMLDNKIE-LYATYGKVMNCGGGGSCGTCIVE-------------------KPESWRLACQTIVGN 135 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~-l~~~~~~~~~CGG~G~CGTC~V~-------------------l~eg~RLACQt~v~~ 135 (173)
+++++.+|++|| ++|+++|++ +++ .|+|.|.||+|+|+ +.+|||||||+++..
T Consensus 12 ~~~~~~~g~tll-~a~~~~gi~gi~~------~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~~~~~g~rLaCq~~~~~ 84 (93)
T 1l5p_A 12 KQLKFEDDQTLF-TVLTEAGLMSADD------TCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLACAITLSG 84 (93)
T ss_dssp EEEECCTTEEHH-HHHHTTTSSCCTT------SCSSSSSSCCCEEEEEESCCCCCCHHHHHHHTTSCTTEEEGGGCEECG
T ss_pred EEEEECCCChHH-HHHHHcCCCcCCc------CCCCcCCcCCCEEEECCCcCCCCCHHHHHHhcCCCCCcEEeeECEECC
Confidence 579999999999 999999999 999 89999999999999 246799999999983
No 20
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.56 E-value=4.3e-16 Score=112.49 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.2
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcC--------------------CCeEEeeeceecc
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKP--------------------ESWRLACQTIVGN 135 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~--------------------eg~RLACQt~v~~ 135 (173)
+++++++|++|| ++|+++|+++++ .| |.|.||+|+|++. +|+|||||+++.
T Consensus 17 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C-~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaCq~~~~- 87 (98)
T 1jq4_A 17 LRFECRSDEDVI-TAALRQNIFLMS------SC-REGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPK- 87 (98)
T ss_dssp EEEEEESCCTHH-HHHHHHTCCCCC------SC-CSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTTCCSS-
T ss_pred EEEEeCCCChHH-HHHHHcCCCCcC------CC-CCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEeeCEEC-
Confidence 689999999999 999999999999 79 5899999999821 258999999999
Q ss_pred cCCCcceEEEecc
Q 030679 136 KENSGKVCSRTMF 148 (173)
Q Consensus 136 ~~~~gdv~V~~~p 148 (173)
+|++|++++
T Consensus 88 ----~d~~v~~~~ 96 (98)
T 1jq4_A 88 ----TDLEIELPY 96 (98)
T ss_dssp ----CCSEEECSC
T ss_pred ----CCEEEEecC
Confidence 899999865
No 21
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.47 E-value=1.7e-14 Score=110.83 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=57.7
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE--------------
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE-------------- 120 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~-------------- 120 (173)
|++|+|+ .+|. .++++++|++|| ++|+++|+++++ .|+ .|.||+|+|+
T Consensus 27 m~~i~i~-------~~g~---~~v~v~~g~tlL-~aa~~~Gi~i~~------~C~-~G~CgtC~v~v~~G~v~~~e~~~L 88 (128)
T 1doi_A 27 ASDMDLD-------DEDY---GSLEVNEGEYIL-EAAEAQGYDWPF------SCR-AGACANCAAIVLEGDIDMDMQQIL 88 (128)
T ss_dssp HHHSCCC-------TTTE---EEEECCTTSCHH-HHHHHTTCCCCC------SSS-SSSSSTTEEEEEESCEEECCCSSS
T ss_pred ccEEEEE-------eCCc---EEEEECCCCcHH-HHHHHcCCCCcc------CCC-ccCCCCCEeEEecCCcCchhhccC
Confidence 6667662 3441 278999999999 999999999999 795 8999999999
Q ss_pred -----cCCCeEEeeeceecccCCCcc-eEEEec
Q 030679 121 -----KPESWRLACQTIVGNKENSGK-VCSRTM 147 (173)
Q Consensus 121 -----l~eg~RLACQt~v~~~~~~gd-v~V~~~ 147 (173)
..+|+|||||+++. +| ++|+..
T Consensus 89 ~~~e~~~~g~rLaCq~~~~-----~d~i~i~~~ 116 (128)
T 1doi_A 89 SDEEVEDKNVRLTCIGSPD-----ADEVKIVYN 116 (128)
T ss_dssp CHHHHHTSCEEEGGGEEEC-----SSEEEEEEC
T ss_pred CHhHhccCCEEEEEEeEEc-----CCeEEEEec
Confidence 25789999999999 67 777754
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.46 E-value=4.9e-14 Score=132.62 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=63.1
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE--------------
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE-------------- 120 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~-------------- 120 (173)
|...+|+|. ++| +++++++|++|| ++++++|+++++ .|+|.|.||||+|+
T Consensus 1 M~m~~V~~~-----~sg----~~v~v~~G~tLL-eAa~~aGi~ip~------~C~G~G~CGtC~v~V~~G~v~~~e~~~L 64 (631)
T 3zyy_X 1 MAEYKVLFK-----PDQ----KEVAISENTNLM-EALNLAGINIKT------VCGGAGTCGKCLVRVVDGQKRVESYGKL 64 (631)
T ss_dssp --CEEEEEE-----TTT----EEEEECTTSCHH-HHHHHHTCCCCC------SCCCSSCCSTTEEEEEESCEEESCCTTC
T ss_pred CCceEEEEe-----cCC----eEEEECCCCcHH-HHHHHcCCCCCc------CCCCCCcCCCCEEEEeeCcccccccccC
Confidence 344556564 445 589999999999 999999999999 79999999999998
Q ss_pred ----cCCCeEEeeeceecccCCCcceEEEeccHH
Q 030679 121 ----KPESWRLACQTIVGNKENSGKVCSRTMFLL 150 (173)
Q Consensus 121 ----l~eg~RLACQt~v~~~~~~gdv~V~~~p~~ 150 (173)
+.+|+||+||+++. +|++|+++++.
T Consensus 65 s~~e~~~G~rLaCqa~~~-----sDl~Ielp~~~ 93 (631)
T 3zyy_X 65 KQEEIAQGYVLACQTYPE-----SDLIIEIPFDS 93 (631)
T ss_dssp CHHHHHTTEEETTTEEEC-----SSEEEECCTTS
T ss_pred CHHHhcCCcEEeeeCEEC-----CCEEEEecchh
Confidence 34679999999999 89999998764
No 23
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.46 E-value=6.7e-14 Score=117.97 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=54.7
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcC----------------------CCeEEeeecee
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKP----------------------ESWRLACQTIV 133 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~----------------------eg~RLACQt~v 133 (173)
+++++++|++|| ++++++||++++ .|+ .|.||+|+|++. +|+|||||+++
T Consensus 16 ~~~~~~~g~tll-~a~~~~gi~i~~------~C~-~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~LaCq~~~ 87 (338)
T 1krh_A 16 RFICIAQGETLS-DAAYRQQINIPM------DCR-EGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRP 87 (338)
T ss_dssp EEEEECTTCCHH-HHHHHTTCCCSC------SCS-SSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEETTTCEE
T ss_pred EEEEeCCCCcHH-HHHHHcCCCccc------CCC-CcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeEEEEeCEE
Confidence 689999999999 999999999999 898 899999999931 35799999999
Q ss_pred cccCCCcceEEEeccH
Q 030679 134 GNKENSGKVCSRTMFL 149 (173)
Q Consensus 134 ~~~~~~gdv~V~~~p~ 149 (173)
. +|++|++++.
T Consensus 88 ~-----~~~~v~~~~~ 98 (338)
T 1krh_A 88 T-----SDAVFQIQAS 98 (338)
T ss_dssp S-----SSEEEEESSC
T ss_pred C-----CCeEEEEecc
Confidence 9 8999999765
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.34 E-value=1.2e-12 Score=110.38 Aligned_cols=67 Identities=15% Similarity=0.424 Sum_probs=56.7
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE---------------
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE--------------- 120 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~--------------- 120 (173)
..++|+|. +.| +++++++|++|| |+|+++|+++++ .|+ .|.||+|+|+
T Consensus 236 ~~~~v~~~-----~~~----~~~~~~~~~~ll-~a~~~~g~~~~~------~C~-~G~Cg~C~~~v~~G~~~~~~~~l~~ 298 (321)
T 2pia_A 236 TPFTVRLS-----RSG----TSFEIPANRSIL-EVLRDANVRVPS------SCE-SGTCGSCKTALCSGEADHRDMVLRD 298 (321)
T ss_dssp CCEEEEET-----TTC----CEEEECTTSCHH-HHHHHTTCCCCC------SCS-SSSSCTTEEEEEESCEECCCSSCCT
T ss_pred ccEEEEEe-----CCC----eEEEECCCCcHH-HHHHHcCCCCCC------CCC-CCCCCCCEEEEecCccccccCCCCh
Confidence 45777774 334 478999999999 999999999999 795 8999999999
Q ss_pred --cCCCeEEeeeceecccCCCcc-eEEE
Q 030679 121 --KPESWRLACQTIVGNKENSGK-VCSR 145 (173)
Q Consensus 121 --l~eg~RLACQt~v~~~~~~gd-v~V~ 145 (173)
. +|++|+||+++. +| ++|+
T Consensus 299 ~e~-~g~~L~C~~~~~-----~d~~~i~ 320 (321)
T 2pia_A 299 DEK-GTQIMVCVSRAK-----SAELVLD 320 (321)
T ss_dssp TTT-TTEEETTTCEES-----SSEEEEC
T ss_pred HHH-CCeEEEeEeEEC-----CCcEEEe
Confidence 2 689999999999 76 8875
No 25
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.93 E-value=7.8e-10 Score=90.39 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=67.2
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
-+++|.+.+|+.+..+.++.+++++++|++|| ++|+++|+.....+.+...|+ .|.||+|.|++....+|||++.+.+
T Consensus 6 ~~~~i~R~~~~~~~~~~~~~~~~~~~~~~tll-~al~~~~~~~~p~l~~~~~c~-~G~Cg~C~v~v~G~~~~aC~~~~~~ 83 (243)
T 1kf6_B 6 LKIEVVRYNPEVDTAPHSAFYEVPYDATTSLL-DALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVNNVPKLACKTFLRD 83 (243)
T ss_dssp EEEEEEECCTTTCSSCEEEEEEEEECTTCBHH-HHHHHHHHHTCTTCCCCCCCS-SSSSCCCEEEETTEEEEGGGCBGGG
T ss_pred EEEEEEEcCCCCCCCCeeEEEEEecCCCChHH-HHHHHcCcccCCCcccccCCC-CCcCCCCEeEECCEEEeeeeeEHhh
Confidence 45777777776544566778889999999999 999999966333455566894 8999999999877789999999984
Q ss_pred cCCCcceEEEec
Q 030679 136 KENSGKVCSRTM 147 (173)
Q Consensus 136 ~~~~gdv~V~~~ 147 (173)
.+ +.++|+.+
T Consensus 84 ~~--~~~~i~~l 93 (243)
T 1kf6_B 84 YT--DGMKVEAL 93 (243)
T ss_dssp CT--TCEEEECC
T ss_pred CC--CcEEEEec
Confidence 32 23777653
No 26
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.93 E-value=8.1e-10 Score=90.37 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=65.2
Q ss_pred cEEEEEecCCCC-CCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 57 EIELEFIAPRAG-DDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 57 ~I~Vtf~~~~~~-~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
+++|.+.+|..+ ..+.+..+++++.+|++|| |+|++.|+.+..++.+...|+ .|.||+|.|.+....+|||++.+.+
T Consensus 6 ~~~i~R~~~~~~~~~~~~~~~~v~~~~~~tlL-~~l~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~i~G~~~~aC~~~~~~ 83 (241)
T 2bs2_B 6 TIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIF-IVLNMIRETYDPDLNFDFVCR-AGICGSCGMMINGRPSLACRTLTKD 83 (241)
T ss_dssp EEEEEECCTTCTTCCCEEEEEEEECCTTCBHH-HHHHHHHHHTCTTCCCCCSSS-SSSSCTTEEEETTEEEEGGGCBGGG
T ss_pred EEEEEEeCCCCCCCCceEEEEEEeCCCCChHH-HHHHHhchhcCCCCccCCCCC-CCCCCCCEeEECCCeecchhCcHhH
Confidence 567767666543 3445677888999999999 999988765444455566897 7999999999966678999999985
Q ss_pred cCCCcceEEEec
Q 030679 136 KENSGKVCSRTM 147 (173)
Q Consensus 136 ~~~~gdv~V~~~ 147 (173)
.. ++.++|+.+
T Consensus 84 ~~-g~~~~ie~l 94 (241)
T 2bs2_B 84 FE-DGVITLLPL 94 (241)
T ss_dssp CT-TSEEEEECC
T ss_pred cC-CCeEEEecC
Confidence 32 233677654
No 27
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.92 E-value=9.8e-10 Score=89.54 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=67.7
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecC--ChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceec
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAIS--GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVG 134 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~--G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~ 134 (173)
+++|.+.+|+.+....++.+++++++ |++|| ++|++.++. ...+++..+|+ .|.||.|.|.+....+|||++.+.
T Consensus 4 ~~~i~R~~~~~~~~~~~~~~~v~~~~~~~~tll-~~l~~~~~~-~~~l~~~~~C~-~g~Cg~C~v~v~G~~~laC~~~~~ 80 (238)
T 2wdq_B 4 EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLL-DALIQLKEK-DPSLSFRRSCR-EGVCGSDGLNMNGKNGLACITPIS 80 (238)
T ss_dssp EEEEEECCTTTCSSCEEEEEEEECCTTCCCBHH-HHHHHHHHH-CTTCCCCCSSS-SSSSCTTEEEETTEEEEGGGCBGG
T ss_pred EEEEEEcCCCCCCCCceEEEEeecCCCCCChHH-HHHHHhccc-CCCccccccCC-CCCCCCCEEEECCEEEcccccchh
Confidence 46777777655444567778889988 99999 999999866 33466677998 799999999997777899999998
Q ss_pred c-cCCCcceEEEec
Q 030679 135 N-KENSGKVCSRTM 147 (173)
Q Consensus 135 ~-~~~~gdv~V~~~ 147 (173)
+ ...++.++|+.+
T Consensus 81 ~~g~~~~~~~ie~l 94 (238)
T 2wdq_B 81 ALNQPGKKIVIRPL 94 (238)
T ss_dssp GTCCTTSCEEEECC
T ss_pred hhccCCCCEEEeeC
Confidence 6 233345788844
No 28
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=98.80 E-value=3.9e-09 Score=87.47 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=65.6
Q ss_pred CCcEEEEEecCCCCC-CCCCCeEEEEecC-ChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeece
Q 030679 55 KPEIELEFIAPRAGD-DGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~-DG~~~~~~vev~~-G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~ 132 (173)
+-+++|.+.+|+.+. ...+..++|++.+ |++|| |+|++.|+.....+.+...|+ .|.||+|.|.+....+|||++.
T Consensus 11 ~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlL-d~l~~~~~~~~p~l~~~~~c~-~g~Cg~C~v~i~G~~~~aC~~~ 88 (252)
T 2h88_B 11 IKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVL-DALIKIKNELDSTLTFRRSCR-EGICGSCAMNIAGGNTLACTKK 88 (252)
T ss_dssp EEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHH-HHHHHHHHHTCTTCCCCCSCS-SSSSCTTEEEETTEEEEGGGSB
T ss_pred eEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHH-HHHHHhCcccCCCccccCCCC-CCCCCCCEEEECCcEEccccCC
Confidence 356777776664421 2256667788888 99999 999998864443455566896 8999999999877789999999
Q ss_pred ecccCCCcceEEEec
Q 030679 133 VGNKENSGKVCSRTM 147 (173)
Q Consensus 133 v~~~~~~gdv~V~~~ 147 (173)
+.+.+ +..++|+.+
T Consensus 89 ~~~~~-g~~~~iepl 102 (252)
T 2h88_B 89 IDPDL-SKTTKIYPL 102 (252)
T ss_dssp CCCCT-TSCEEEECS
T ss_pred HhHcC-CCceEEecc
Confidence 98532 225788754
No 29
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=98.76 E-value=1.3e-08 Score=87.37 Aligned_cols=92 Identities=18% Similarity=0.255 Sum_probs=69.7
Q ss_pred CCCcEEEEEecCCC-CCCCCCCeEEEEecC-ChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeec
Q 030679 54 EKPEIELEFIAPRA-GDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQT 131 (173)
Q Consensus 54 pmp~I~Vtf~~~~~-~~DG~~~~~~vev~~-G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt 131 (173)
-+-+++|...+|+. +....++.++|++.+ |++|| ++|++.+..+...+++.-.|+ .|.||.|.|.+....+|||.+
T Consensus 34 ~~~~~~I~R~~p~~~~~~p~~~~~~v~v~~~~~tlL-daL~~i~~~~~ptl~~~~~C~-~G~CGsC~V~InG~~~laC~t 111 (282)
T 3vr8_B 34 RIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVL-DALIKIKNEVDPTLTFRRSCR-EGICGSCAMNIAGENTLACIC 111 (282)
T ss_pred eeEEEEEEEeCCCCCCCCCCcEEEEEEeCCCCCcHH-HHHHhcCcccCCceeecCCCC-CCCCCCCEEEECCEEecchhh
Confidence 34567777777753 233566677888888 99999 999998887666677777899 599999999998878999999
Q ss_pred eecccCCCcceEEEecc
Q 030679 132 IVGNKENSGKVCSRTMF 148 (173)
Q Consensus 132 ~v~~~~~~gdv~V~~~p 148 (173)
.+.+. .++.++|+.++
T Consensus 112 ~v~~~-~~~~~tIepL~ 127 (282)
T 3vr8_B 112 NIDQN-TSKTTKIYPLP 127 (282)
T ss_pred hHhHh-cCCcEEeccCC
Confidence 98742 23457777543
No 30
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.36 E-value=6.5e-07 Score=84.84 Aligned_cols=61 Identities=16% Similarity=0.341 Sum_probs=52.4
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccC-----CCceeecccEEEcC-----------------------CCeEE
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNC-----GGGGSCGTCIVEKP-----------------------ESWRL 127 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~C-----GG~G~CGTC~V~l~-----------------------eg~RL 127 (173)
+++++++|++|| ++++++||++++ .| ++.|.|+.|.|++. .+..+
T Consensus 9 ~~~~v~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~~~~ 81 (783)
T 3i9v_3 9 RIVEVPPGTSVM-DAVFHAGYDVPL------FCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAA 81 (783)
T ss_dssp CEEEECTTCBHH-HHHHHTTCCCCC------SSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSSCEE
T ss_pred EEEEeCCCChHH-HHHHHhCCCccc------cCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCCCccc
Confidence 479999999999 999999999999 79 56899999999962 24678
Q ss_pred eeeceecccCCCcceEEEecc
Q 030679 128 ACQTIVGNKENSGKVCSRTMF 148 (173)
Q Consensus 128 ACQt~v~~~~~~gdv~V~~~p 148 (173)
||++.+. ..++|+...
T Consensus 82 aC~t~v~-----~gm~v~t~~ 97 (783)
T 3i9v_3 82 SCVTAVA-----DGMVVDTLS 97 (783)
T ss_dssp TTTCBCC-----SSEEEESSS
T ss_pred ccCCCCC-----CCCEEEECC
Confidence 9999999 678888653
No 31
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.34 E-value=6.9e-07 Score=82.19 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=52.4
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCC-----C-ceeecccEEEcCCC-eEEeeeceecccCCCcceEEEecc
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----G-GGSCGTCIVEKPES-WRLACQTIVGNKENSGKVCSRTMF 148 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CG-----G-~G~CGTC~V~l~eg-~RLACQt~v~~~~~~gdv~V~~~p 148 (173)
+.+++++|++|| ++|+++|+.++. .|+ + .|.||.|.|++... .++||++.+. .+++|....
T Consensus 9 ~~v~v~~g~tiL-~a~~~~gi~ip~------lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~-----~gm~V~T~~ 76 (574)
T 3c8y_A 9 VQFNTDEDTTIL-KFARDNNIDISA------LCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIE-----DGMIINTNS 76 (574)
T ss_dssp EEEEECCCCBHH-HHHHHTTCCCCC------SSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCC-----TTCEEESSC
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------ccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcc-----cceeEEecc
Confidence 578999999999 999999999988 566 7 89999999997665 7999999998 677777543
No 32
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.30 E-value=4.7e-07 Score=71.89 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=45.2
Q ss_pred EEEEecCChhHHHHHHHhC-CCC-ccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 76 ERAKAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~-GI~-l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
.++++++|++|| ++|+++ |+. ... .|+ .|.||+|.|.+....++||.+.+.+
T Consensus 21 ~~~~v~~~~tlL-~~Lr~~~gl~g~~~------~C~-~G~CGaC~V~vdG~~v~sC~~~~~~ 74 (168)
T 1t3q_A 21 RVFYVEPRMHLA-DALREVVGLTGTKI------GCE-QGVCGSCTILIDGAPMRSCLTLAVQ 74 (168)
T ss_dssp EEEEECTTSBHH-HHHHHTTCCTTSCC------SCS-SSSSCTTEEEETTEEEEGGGSBGGG
T ss_pred EEEecCCCCcHH-HHHHhcCCCCcccc------CCC-CCCCCCcEEEECCCEeechhhHHHH
Confidence 567789999999 999996 887 656 798 7999999999977789999999874
No 33
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=98.09 E-value=1.5e-06 Score=68.92 Aligned_cols=53 Identities=28% Similarity=0.565 Sum_probs=43.5
Q ss_pred EEEEecCChhHHHHHHHhC-CCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~-GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
+++++.+|++|| ++|++. |+. +....|+ .|.||.|.|.+....++||++.+.+
T Consensus 14 ~~v~~~~~~tLL-~~Lr~~~gl~-----g~k~gC~-~G~CGaCtV~vdG~~v~sC~~~~~~ 67 (161)
T 1rm6_C 14 REDLVPDNMLLL-DYLRETVGLT-----GTKQGCD-GGECGACTVLVDDRPRLACSTLAHQ 67 (161)
T ss_dssp EEEEEETTCBHH-HHHHHTTCCT-----TSCCCSS-SSSSCTTEEEETTEEEEGGGSBGGG
T ss_pred EEEecCCcCcHH-HHHHHcCCCc-----ccccCCC-CCCCCCCEEEECCcEEechHHHHHH
Confidence 567789999999 999986 542 2233798 6999999999988889999999874
No 34
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.93 E-value=5.8e-06 Score=66.00 Aligned_cols=52 Identities=19% Similarity=0.483 Sum_probs=43.4
Q ss_pred EEEEecCChhHHHHHHHhC-CCC-ccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 76 ERAKAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~-GI~-l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
+++++.++++|| ++|++. |+. ... .|+ .|.||.|.|.+...-++||.+.+..
T Consensus 15 ~~v~v~p~~tLL-d~LR~~lgltgtk~------gC~-~G~CGACtV~vdG~~v~sC~~~~~~ 68 (160)
T 3hrd_D 15 RSIVTEPNKRLL-DLLREDFGLTSVKE------GCS-EGECGACTVIFNGDPVTTCCMLAGQ 68 (160)
T ss_dssp EEEEECSSSBHH-HHHHTTSCCTTSCC------SSS-SSSSCTTEEEETTEEEEGGGSBGGG
T ss_pred EEEecCCCCCHH-HHHHHhcCCCcccc------ccC-CCCCCCCEEEECCEEEEchhhhhhh
Confidence 568899999999 999975 552 333 698 7999999999988889999998863
No 35
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.92 E-value=7.3e-06 Score=65.58 Aligned_cols=53 Identities=15% Similarity=0.348 Sum_probs=42.8
Q ss_pred EEEEecCChhHHHHHHHhC-CCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~-GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
++++++++++|| ++|++. |+. + ....|+ .|.||.|.|.+...-++||.+.+..
T Consensus 15 ~~~~v~~~~tLL-d~LR~~lgl~--g---~k~gC~-~G~CGaCtV~vdG~~v~SC~~~~~~ 68 (166)
T 1n62_A 15 VEALVEPRTLLI-HFIREQQNLT--G---AHIGCD-TSHCGACTVDLDGMSVKSCTMFAVQ 68 (166)
T ss_dssp EEEEECTTCBHH-HHHHHTSCCT--T---SCCCCS-SSCSCTTEEEETTEEEEGGGSBGGG
T ss_pred EEEecCCCCcHH-HHHHHcCCCC--c---cccCCC-CCCCCCCEEEECCcEEechhhhHHH
Confidence 567889999999 999984 432 1 123698 6999999999988889999999863
No 36
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.90 E-value=4.4e-06 Score=66.69 Aligned_cols=53 Identities=15% Similarity=0.420 Sum_probs=42.9
Q ss_pred EEEEecCChhHHHHHHHhC-CCCccccccccccCCCceeecccEEEcCCCeEEeeeceecc
Q 030679 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGN 135 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~-GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~ 135 (173)
++++++++++|| ++|++. |+. +....|+ .|.||.|.|.+...-++||.+.+..
T Consensus 15 ~~~~v~~~~tLL-d~LR~~lglt-----g~k~gC~-~G~CGaCtV~vdG~~v~sC~~~~~~ 68 (163)
T 1ffv_A 15 QEKAVEPRTLLI-HFLREELNLT-----GAHIGCE-TSHCGACTVDIDGRSVKSCTHLAVQ 68 (163)
T ss_dssp EEEEECTTCBHH-HHHHHTSCCT-----TSCCCCS-SSCSCTTEEEETTEEEEGGGSBGGG
T ss_pred EEEecCCCCcHH-HHHHhcCCCc-----ccccCCC-CCCCCCCEEEECCcEecchHhhHHH
Confidence 567889999999 999984 432 1223698 6999999999988889999998874
No 37
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=96.95 E-value=0.00058 Score=66.28 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=49.6
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhC-CCCccccccccccCCCceeecccEEEcCCCeEEeeecee
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIV 133 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~-GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v 133 (173)
|.+|+|+.++ + .+++++.++++|| ++|++. |+ .+....|+ .|.||.|.|.+...-++||.+.+
T Consensus 1 ~~~~~~~~ng-------~--~~~~~~~~~~~ll-~~Lr~~~~l-----~g~k~gC~-~g~CGaCtv~vdg~~~~sC~~~~ 64 (907)
T 1vlb_A 1 MIQKVITVNG-------I--EQNLFVDAEALLS-DVLRQQLGL-----TGVKVGCE-QGQCGACSVILDGKVVRACVTKM 64 (907)
T ss_dssp CEEEEEEETT-------E--EEEEEECTTSBHH-HHHHHTTCC-----TTSCCSSS-SSSSCTTEEEETTEEEEGGGCBG
T ss_pred CceEEEEECC-------E--EEEEecCCCChHH-HHHHHhcCC-----CeecCCCC-CCCcCccEEEECCeEeechHhHH
Confidence 3356666543 2 2578899999999 999984 32 23344799 69999999999888999999988
Q ss_pred cc
Q 030679 134 GN 135 (173)
Q Consensus 134 ~~ 135 (173)
..
T Consensus 65 ~~ 66 (907)
T 1vlb_A 65 KR 66 (907)
T ss_dssp GG
T ss_pred HH
Confidence 74
No 38
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.88 E-value=0.00035 Score=67.86 Aligned_cols=66 Identities=21% Similarity=0.406 Sum_probs=48.2
Q ss_pred EEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceeccc-CCCcceEEEec
Q 030679 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK-ENSGKVCSRTM 147 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~-~~~gdv~V~~~ 147 (173)
+++++.++++|| ++|++. +.+ .+....|+ .|.||.|.|.+..--++||.+.+..- +-...+|||-+
T Consensus 13 ~~~~~~~~~~ll-~~Lr~~-~~l---~g~k~gC~-~G~CGaCtv~vdg~~v~sC~~~~~~~~~g~~i~TiEgl 79 (907)
T 1dgj_A 13 RRLLVSPNDLLV-DVLRSQ-LQL---TSVKVGCG-KGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGI 79 (907)
T ss_dssp CEEEECTTCBHH-HHHHHT-TCC---TTSCCSSS-SSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECGGGT
T ss_pred EEEecCCCCcHH-HHHHHh-cCC---CccCCCCC-CCCcCceEEEECCeEeehhHhHHHHHcCCCcEEEECCC
Confidence 468899999999 999985 222 23445799 69999999999888999999988743 22223455533
No 39
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=96.60 E-value=0.0008 Score=60.92 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=46.4
Q ss_pred EEE-EecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEc----CCCeEEeeeceecccCCCcceEEEec
Q 030679 76 ERA-KAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEK----PESWRLACQTIVGNKENSGKVCSRTM 147 (173)
Q Consensus 76 ~~v-ev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l----~eg~RLACQt~v~~~~~~gdv~V~~~ 147 (173)
+++ ++.++++|| ++|++.|+. +....|+ .|.||.|.|.+ ..--++||.+.+..-+....+|||-+
T Consensus 12 ~~~~~~~~~~~Ll-~~Lr~~~l~-----g~k~gC~-~G~CGaCtV~v~~~~~g~~v~sCl~~~~~~~g~~i~TiEgl 81 (462)
T 2w3s_A 12 RRVRIEDPTQSLL-EWLRAEGLT-----GTKEGCN-EGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGI 81 (462)
T ss_dssp EEEECSCTTCBHH-HHHHHTTCT-----TSCCSCS-SSSSCTTEEEEEETTEEEEEETTTCBGGGGTTCEEECGGGT
T ss_pred EEEecCCCCCcHH-HHHHHcCCC-----ccCCCCC-CCCcCCcEEEEEecCCCeEEEchhhhHHHhCCCcEEEECCC
Confidence 456 668999999 999955653 2344799 69999999997 66679999998874332223455533
No 40
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=96.26 E-value=0.00092 Score=53.62 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=48.3
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhC-CCC-ccccccccccCCCceeecccEEEcC----------CC
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKP----------ES 124 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~-GI~-l~~~~~~~~~CGG~G~CGTC~V~l~----------eg 124 (173)
+|+|+.++.. ..++++.++++|| ++|++. |+. ... .|+ .|.||.|.|.+. .-
T Consensus 4 ~i~~~vNG~~--------~~~~~~~p~~~Ll-~~LR~~lgltGtK~------GC~-~G~CGACTVlvd~~~~~~~~~~g~ 67 (164)
T 3nvw_A 4 ELVFFVNGKK--------VVEKNADPETTLL-AYLRRKLGLRGTKL------GCG-EGGCGACTVMLSKYDRLQDKIIHF 67 (164)
T ss_dssp CEEEEETTEE--------EEETTCCTTCBHH-HHHHHTSCCTTSCC------SCS-SSSSCTTEEEEEEEETTTTEEEEE
T ss_pred eEEEEECCEE--------EEEecCCCCCCHH-HHHHHHcCCCCcCC------CcC-CCCCCCCEEEEccccccccccCCc
Confidence 4777665411 1235688999999 999975 542 333 697 799999999976 34
Q ss_pred eEEeeeceecccCCCcceEEE
Q 030679 125 WRLACQTIVGNKENSGKVCSR 145 (173)
Q Consensus 125 ~RLACQt~v~~~~~~gdv~V~ 145 (173)
-+.||.+.+..-+-...+|||
T Consensus 68 ~v~SCl~~a~~~~G~~I~TiE 88 (164)
T 3nvw_A 68 SANACLAPICTLHHVAVTTVE 88 (164)
T ss_dssp EEETTTCBGGGCTTCEEECGG
T ss_pred EEehhhhhHHHhCCcceEEec
Confidence 688999877633322234444
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=95.30 E-value=0.028 Score=49.57 Aligned_cols=67 Identities=22% Similarity=0.196 Sum_probs=44.8
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCC-eEEeeecee
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPES-WRLACQTIV 133 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg-~RLACQt~v 133 (173)
+.+|+|+| || +.+++.+|+||+ ++|+++|+++...-.++..+| .-.|+.|.|.+... ..-+|++.+
T Consensus 13 ~~~v~~~~-------dg----~~~~~~~g~ti~-~a~~~~g~~~~~~~~~~~p~g-~~~~~~c~v~v~g~~~~~ac~~~v 79 (493)
T 1y56_A 13 GKKVTIYF-------EG----KELEAYEGEKLP-VALLANEIYWLTTSNEGRKRG-AFTFGPVPMTVNGVKGLEARRIKV 79 (493)
T ss_dssp SCEEEEEE-------TT----EEEEEETTCBHH-HHHHHTTCCCCEECTTSCEEC-SSSSSCCEEBSSSCTTEEGGGCBC
T ss_pred CCeEEEEE-------CC----EEEEecCCCHHH-HHHHHCCCceecCCCCCCCCc-cccceEEEEEECCEecccceeEEc
Confidence 45688887 44 579999999999 999999996532100111222 22268899996422 256999887
Q ss_pred c
Q 030679 134 G 134 (173)
Q Consensus 134 ~ 134 (173)
.
T Consensus 80 ~ 80 (493)
T 1y56_A 80 K 80 (493)
T ss_dssp C
T ss_pred c
Confidence 7
No 42
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=95.13 E-value=0.0071 Score=48.84 Aligned_cols=43 Identities=23% Similarity=0.509 Sum_probs=35.2
Q ss_pred HHHHHHhCCCCccccccccccCCCceeecccEEEcC-C--CeEEeeec
Q 030679 87 LRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKP-E--SWRLACQT 131 (173)
Q Consensus 87 LRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~-e--g~RLACQt 131 (173)
+++ |.+.|++.+-++..+|.|| -|.||.|.|... . +++..|.-
T Consensus 206 v~~-l~~~gv~~~vs~e~~m~CG-~G~C~~C~~~~~~~~~~~~~~C~d 251 (262)
T 1ep3_B 206 VAK-KYDQLERLYISMESRMACG-IGACYACVEHDKEDESHALKVCED 251 (262)
T ss_dssp HHH-HTTTCSSEEEECCCCCSSS-SSSSCTTEEEETTEEEEEEETTTT
T ss_pred HHH-HHhCCCCEEEEecccccCc-ccccccCCcccccCCCceeEEeCC
Confidence 346 7788999888889999998 799999999864 3 57888864
No 43
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=94.18 E-value=0.06 Score=51.94 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=51.7
Q ss_pred CCCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCcccc---cc--ccccCCCceeecccEEEcC---C--
Q 030679 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYAT---YG--KVMNCGGGGSCGTCIVEKP---E-- 123 (173)
Q Consensus 54 pmp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~---~~--~~~~CGG~G~CGTC~V~l~---e-- 123 (173)
.+..|+|+| || +.+++.+|++|+ +||+.+|+.+... |. +-..|+| |.|.-|.|.+. .
T Consensus 19 ~~~~~~~~~-------dG----~~~~~~~g~tv~-~aL~~~Gv~~~~~s~~~~~prg~~~~~-~~c~~~~v~v~~~~~g~ 85 (965)
T 2gag_A 19 REEALSLTV-------DG----AKLSAFRGDTVA-SALLANGVRRAGNSLYLDRPRGIFAAG-VEEPNALVTVSARHEQD 85 (965)
T ss_dssp EEEEEEEEE-------TT----EEEEEEETCBHH-HHHHHTTCCBCSCCTTTCCCCBCCCSS-TTCCSCEEEECCCSTTC
T ss_pred CCCeEEEEE-------CC----EEEEecCCCHHH-HHHHHcCCeEeecCCCCCCCcccccCC-ccCCceEEEEccCCCCC
Confidence 455788887 44 578999999999 9999999885442 11 2356875 88999999987 3
Q ss_pred ---CeEEeeeceec
Q 030679 124 ---SWRLACQTIVG 134 (173)
Q Consensus 124 ---g~RLACQt~v~ 134 (173)
....||++.+.
T Consensus 86 ~~~~~~~ac~~~~~ 99 (965)
T 2gag_A 86 IDESMLPATTVPVT 99 (965)
T ss_dssp CCEEEEEGGGCBCC
T ss_pred cCCccccceeeecc
Confidence 35689998887
No 44
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=93.58 E-value=0.05 Score=49.57 Aligned_cols=76 Identities=8% Similarity=-0.005 Sum_probs=50.9
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEEcCCCeEEeeeceeccc
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNK 136 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~l~eg~RLACQt~v~~~ 136 (173)
+++|.+.+|+.+..+.++..+|++.+|+++| |+|...+ +++ |+- +|.+.+....+|| .+.+.+.
T Consensus 26 ~~~i~R~~p~~~~~p~~~~y~v~~~~~~~vL-d~L~~ik-----~l~----fr~-----sCam~ING~~~la-~t~~~~~ 89 (514)
T 3kwl_A 26 HVKVFRFETNKDYNPAYESYFLEYQEDQYLL-DLLKQLK-----GVS----YSE-----NIALKINQIAVFE-DAKVSDL 89 (514)
T ss_dssp EEEEEECBTTSCSCCEEEEEEEECCTTCBHH-HHHTTST-----TCC----CCS-----SCCEEETTEEECS-CCBHHHH
T ss_pred EEEEEEeCCCCCCCCceEEEEEeCCCCCcHH-HHHHHhh-----hCe----eec-----cceEEECCEehhh-hhhHHHH
Confidence 3666667766544566666778888999999 9999877 333 442 7889998889999 4444321
Q ss_pred C--CCcceEEEecc
Q 030679 137 E--NSGKVCSRTMF 148 (173)
Q Consensus 137 ~--~~gdv~V~~~p 148 (173)
. .++.++|+.++
T Consensus 90 ~~~~~~~i~iePl~ 103 (514)
T 3kwl_A 90 VAFFSKEWVLDPLS 103 (514)
T ss_dssp HHHHCSEEEEECSC
T ss_pred hhccCCcEEEEECC
Confidence 1 13467777554
No 45
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=85.94 E-value=0.46 Score=48.13 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=35.7
Q ss_pred EecCChhHHHHHHHhC-CCC-ccccccccccCCCceeecccEEEcC----------CCeEEeeeceec
Q 030679 79 KAISGEKLLRNIMLDN-KIE-LYATYGKVMNCGGGGSCGTCIVEKP----------ESWRLACQTIVG 134 (173)
Q Consensus 79 ev~~G~tLLRdall~~-GI~-l~~~~~~~~~CGG~G~CGTC~V~l~----------eg~RLACQt~v~ 134 (173)
.+.+.++|| +.|++. |+. .-. .|+ .|.||.|.|.+. .--..||.+-+.
T Consensus 19 ~~~p~~~ll-~~LR~~~~ltgtk~------gC~-~g~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~ 78 (1332)
T 3unc_A 19 NADPETTLL-AYLRRKLGLRGTKL------GCG-EGGCGACTVMLSKYDRLQDKIIHFSANACLAPIC 78 (1332)
T ss_dssp TCCTTCBHH-HHHHHTSCCTTSCC------SCS-SSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGG
T ss_pred cCCCCCCHH-HHHhhhcCCCCcCC------CcC-CCCCCCcEEEEecccccccccCCeEeehHHhhHH
Confidence 578999999 999974 543 222 698 799999999963 224688987765
No 46
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=77.41 E-value=2.5 Score=31.12 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccc
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~ 100 (173)
.-+|+|++++ +||..+...|+ ..|++|+ ++|.++. .+..
T Consensus 6 ~k~i~i~v~~----~~~~~~~~~v~-t~g~tL~-dvLk~~~-~ve~ 44 (101)
T 3u7z_A 6 EKHITVTVIH----GDQTENVFEFD-TDAKYLG-EVLESEN-LVDG 44 (101)
T ss_dssp CEEEEEEEEC----TTSCEEEEEEE-ECCSBHH-HHHHHTT-CEEE
T ss_pred eeEEEEEEEc----CCCceeEEEEc-CCccHHH-HHHHHcC-cccc
Confidence 3568898887 57777778888 9999988 9999888 3443
No 47
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=65.31 E-value=7.9 Score=39.19 Aligned_cols=52 Identities=31% Similarity=0.480 Sum_probs=33.3
Q ss_pred CCCcEEEEEecCCCCCCCCCCeEEE-EecCChhHHHHHHHhCCCCccccccccccCCCceeecccEEE
Q 030679 54 EKPEIELEFIAPRAGDDGSYPVERA-KAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE 120 (173)
Q Consensus 54 pmp~I~Vtf~~~~~~~DG~~~~~~v-ev~~G~tLLRdall~~GI~l~~~~~~~~~CGG~G~CGTC~V~ 120 (173)
...+|.|.+++.+ .++ .+.+.+||| +.|+++ ..+-+ +|. -|+ .|-||.|.|-
T Consensus 6 ~~~~l~F~vNG~~---------v~~~~~~p~~tLl-~~LR~~-~~ltG--TK~-gC~-EG~CGACtV~ 58 (1335)
T 3zyv_A 6 ESDELIFFVNGKK---------VTERNADPEVNLL-FYLRKV-IRLTG--TKY-GCG-GGDCGACTVM 58 (1335)
T ss_dssp -CCCEEEEETTEE---------EEESSCCTTCBHH-HHHHHT-TCCTT--SCC-SCS-SSSSCTTEEE
T ss_pred CCCeEEEEECCEE---------EEeCCCCcCccHH-HHHhcc-CCCcc--ccc-ccC-CCCCcceEEE
Confidence 3456888654311 122 356889999 999973 22333 222 599 6999999998
No 48
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=44.72 E-value=18 Score=26.65 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=13.7
Q ss_pred EEEEecCChhHHHHHHHh
Q 030679 76 ERAKAISGEKLLRNIMLD 93 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~ 93 (173)
..|+|.+|++ |||||.+
T Consensus 30 T~V~VrpG~t-lrdAL~K 46 (95)
T 2l05_A 30 TVVPARCGVT-VRDSLKK 46 (95)
T ss_dssp EEEECCTTCB-HHHHHHH
T ss_pred EEEEecCCcC-HHHHHHH
Confidence 4699999999 6687764
No 49
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=41.41 E-value=25 Score=23.76 Aligned_cols=35 Identities=3% Similarity=0.080 Sum_probs=26.5
Q ss_pred cEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCCCCccc
Q 030679 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (173)
Q Consensus 57 ~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~GI~l~~ 100 (173)
+|+|++++. ...++++++|.|+- |.+.+.|++...
T Consensus 2 ~v~Vkl~g~--------~~~~~ev~~g~Tv~-dLL~~Lgl~~~~ 36 (74)
T 2l32_A 2 NVTVEVVGE--------ETSEVAVDDDGTYA-DLVRAVDLSPHE 36 (74)
T ss_dssp EEEEECSSS--------SEEEEECSTTCSHH-HHHHTTCCCSSC
T ss_pred EEEEEEeCc--------cceeEEcCCCCcHH-HHHHHcCCCcce
Confidence 477777642 12568999999966 999999998766
No 50
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=40.36 E-value=64 Score=21.52 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=24.6
Q ss_pred CCcEEEEEecCCCCCCCCCCeEEEEecC-ChhHHHHHHHhCCCCccc
Q 030679 55 KPEIELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYA 100 (173)
Q Consensus 55 mp~I~Vtf~~~~~~~DG~~~~~~vev~~-G~tLLRdall~~GI~l~~ 100 (173)
...++|++ |||+ ..+++. |.+++ |++.+.+-.+..
T Consensus 9 ~~~i~I~l------pdG~----~~~~~~~~~T~~-dia~~i~~~l~~ 44 (88)
T 1wwt_A 9 SKPIKVTL------PDGK----QVDAESWKTTPY-QIACGISQGLAD 44 (88)
T ss_dssp CCEEEEEC------TTSC----EEEEETTTCCHH-HHHHHSSTTTGG
T ss_pred CCCEEEEE------CCCC----EEEcccCCCCHH-HHHHHhhhcccc
Confidence 34577766 6775 467777 89988 999887655554
No 51
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=40.26 E-value=17 Score=27.22 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=13.8
Q ss_pred EEEEecCChhHHHHHHHh
Q 030679 76 ERAKAISGEKLLRNIMLD 93 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~ 93 (173)
..|+|.+|.+ |||||.+
T Consensus 31 T~V~VrpG~t-lrdaL~K 47 (107)
T 1rrb_A 31 TVVNVRNGMS-LHDCLMK 47 (107)
T ss_dssp EEEECCTTCB-HHHHHHH
T ss_pred EEEEecCCcC-HHHHHHH
Confidence 4799999999 6687765
No 52
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=33.37 E-value=45 Score=29.92 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=23.7
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHhCC
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNK 95 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~~G 95 (173)
..|+|++.-. +......+.|.++.|++++ ++|.++-
T Consensus 315 ~~I~VtytV~---~~~~~~~~~Vtv~~gssll-~vLk~A~ 350 (414)
T 2bb6_A 315 KFIDVLLKVS---GISPSYRHSVSVPAGSSLE-DILKNAQ 350 (414)
T ss_dssp CEEEEEEEEE---SSSSCEEEEEEEETTCCHH-HHHHHHH
T ss_pred ceEEEEEEEe---eCCCccceEEEecCCCCHH-HHHHHHH
Confidence 3455544332 2334456789999999988 8887653
No 53
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=31.45 E-value=29 Score=25.52 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=20.6
Q ss_pred CCCcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHh
Q 030679 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLD 93 (173)
Q Consensus 54 pmp~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~ 93 (173)
....|.+.+. ++. ...|+|.+|.+ |||||.+
T Consensus 12 ~~~~irvhLP------NqQ--rT~V~VrpG~t-lrdaL~K 42 (96)
T 3ny5_A 12 QKPIVRVFLP------NKQ--RTVVPARCGVT-VRDSLKK 42 (96)
T ss_dssp SSCEEEEEET------TTE--EEEEECCTTCB-HHHHHHH
T ss_pred hhCEEEEECC------CCc--eEEEEecCCcC-HHHHHHH
Confidence 4456777553 332 14699999999 6687765
No 54
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=30.31 E-value=28 Score=24.59 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=13.4
Q ss_pred EEEEecCChhHHHHHHHh
Q 030679 76 ERAKAISGEKLLRNIMLD 93 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~ 93 (173)
..|++.+|++ ||||+.+
T Consensus 14 T~V~VrpG~t-lrdaL~K 30 (77)
T 1c1y_B 14 TVVNVRNGMS-LHDCLMK 30 (77)
T ss_dssp EEEECCTTCB-HHHHHHH
T ss_pred EEEEecCCcC-HHHHHHH
Confidence 4699999999 6677664
No 55
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.48 E-value=35 Score=24.59 Aligned_cols=29 Identities=3% Similarity=0.039 Sum_probs=19.2
Q ss_pred CcEEEEEecCCCCCCCCCCeEEEEecCChhHHHHHHHh
Q 030679 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLD 93 (173)
Q Consensus 56 p~I~Vtf~~~~~~~DG~~~~~~vev~~G~tLLRdall~ 93 (173)
..|.+.+ |++.. ..|+|.+|++ |||||.+
T Consensus 8 ~~irvhL------Pn~Qr--T~V~VrpG~t-lrdaL~K 36 (86)
T 1wxm_A 8 GTVKVYL------PNKQR--TVVTVRDGMS-VYDSLDK 36 (86)
T ss_dssp SEEEEEC------SSSCE--EEEECCSSCB-SHHHHHH
T ss_pred ceEEEEC------CCCCe--EEEEecCCcC-HHHHHHH
Confidence 4567655 33321 4699999999 6577664
No 56
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=26.32 E-value=69 Score=20.29 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=19.4
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHhCCCCccc
Q 030679 69 DDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (173)
Q Consensus 69 ~DG~~~~~~vev~~G~tLLRdall~~GI~l~~ 100 (173)
|||+ ..+++.|.+++ +++.+.+..+..
T Consensus 8 p~g~----~~~~~~g~T~~-dla~~i~~~l~~ 34 (73)
T 2kmm_A 8 PKGE----IKRLPQGATAL-DFAYSLHSDLGD 34 (73)
T ss_dssp TTCC----EEEECTTCBHH-HHHHHHCSHHHH
T ss_pred CCCC----EEEcCCCCcHH-HHHHHHhhcccc
Confidence 5664 47889999988 988876554443
No 57
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=22.68 E-value=46 Score=29.72 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.9
Q ss_pred EEEEecCChhHHHHHHHhC
Q 030679 76 ERAKAISGEKLLRNIMLDN 94 (173)
Q Consensus 76 ~~vev~~G~tLLRdall~~ 94 (173)
..|.++.|+++| ++|.++
T Consensus 315 ~~Vtv~~gssll-~vLk~a 332 (399)
T 2pmv_A 315 INVSVKSGSVLL-VVLEEA 332 (399)
T ss_dssp EEEESSSCSCHH-HHHHHH
T ss_pred eEEEecCCCCHH-HHHHHH
Confidence 589999999998 999876
No 58
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=21.67 E-value=90 Score=21.29 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=21.3
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHhCCCCccc
Q 030679 69 DDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (173)
Q Consensus 69 ~DG~~~~~~vev~~G~tLLRdall~~GI~l~~ 100 (173)
|||. .++++.|.|.+ |++...+-.+..
T Consensus 13 P~G~----~~~lp~GaT~~-D~A~~Ih~~lg~ 39 (78)
T 3hvz_A 13 PKGD----VISLPIGSTVI-DFAYAIHSAVGN 39 (78)
T ss_dssp TTSC----EEEEETTCBHH-HHHHHHCHHHHH
T ss_pred CCCC----EEEecCCCCHH-HHHHHhhhhhhc
Confidence 7885 58899999988 999876655555
Done!