BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030681
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
Thaliana Protein Containing Duf538 Domain
Length = 170
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 50 DLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQ--LVWYDKHIKGKLSYG 107
+LL Y LP G+ P D +Y D+ T ++ + C V ++ ++ + + G L G
Sbjct: 56 ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115
Query: 108 AVHDVSGIQAKKLFLWLPVTGIET 131
+ DV GI+ K+ +W+ VT I T
Sbjct: 116 KLTDVEGIKT-KVMIWVKVTSIST 138
>pdb|1RFY|A Chain A, Crystal Structure Of Quorum-Sensing Antiactivator Tram
pdb|1RFY|B Chain B, Crystal Structure Of Quorum-Sensing Antiactivator Tram
Length = 102
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 50 DLLPLYGLPKGLIPSDIKSYTLD 72
+L PL GL +GL P+D+++ T+D
Sbjct: 13 ELRPLIGLTRGLPPTDLETITID 35
>pdb|1US6|A Chain A, Crystal Structure Of The Quorum-Sensing Protein Tram
From Agrobacterium Tumefaciens At 1.65 Ang. Resolution
pdb|1US6|B Chain B, Crystal Structure Of The Quorum-Sensing Protein Tram
From Agrobacterium Tumefaciens At 1.65 Ang. Resolution
Length = 102
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 50 DLLPLYGLPKGLIPSDIKSYTLD 72
+L PL GL +GL P+D+++ T+D
Sbjct: 13 ELRPLIGLTRGLPPTDLETITID 35
>pdb|1UPG|A Chain A, Crystal Structure Of The Quorum-Sensing Protein Tram
From Agrobacterium Tumefaciens
pdb|1UPG|B Chain B, Crystal Structure Of The Quorum-Sensing Protein Tram
From Agrobacterium Tumefaciens
Length = 102
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 50 DLLPLYGLPKGLIPSDIKSYTLD 72
+L PL GL +GL P+D+++ T+D
Sbjct: 13 ELRPLIGLTRGLPPTDLETITID 35
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 124 LPV-TGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQC 160
+PV +G+ K ++L FV EDLPAE I +C
Sbjct: 280 VPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKEC 317
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 124 LPV-TGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQC 160
+PV +G+ K ++L FV EDLPAE I +C
Sbjct: 287 VPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKEC 324
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 39 SHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDK 98
H ++ I+ D P +PS K T + G F + Y + +YD
Sbjct: 332 GHAVECRINAED-------PNTFLPSPGK-ITRFHAPGGFGVRWESHIYAGYTVPPYYDS 383
Query: 99 HIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIET 131
I + YG DV+ + K L + GI+T
Sbjct: 384 MIGKLICYGENRDVAIARMKNALQELIIDGIKT 416
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 39 SHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDK 98
H ++ I+ D P +PS K T + G F + Y + +YD
Sbjct: 352 GHAVECRINAED-------PNTFLPSPGK-ITRFHAPGGFGVRWESHIYAGYTVPPYYDS 403
Query: 99 HIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIET 131
I + YG DV+ + K L + GI+T
Sbjct: 404 MIGKLICYGENRDVAIARMKNALQELIIDGIKT 436
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 39 SHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDK 98
H ++ I+ D P +PS K T + G F + Y + +YD
Sbjct: 332 GHAVECRINAED-------PNTFLPSPGK-ITRFHAPGGFGVRWESHIYAGYTVPPYYDS 383
Query: 99 HIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIET 131
I + YG DV+ + K L + GI+T
Sbjct: 384 MIGKLICYGENRDVAIARMKNALQELIIDGIKT 416
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 39 SHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDK 98
H ++ I+ D P +PS K T + G F + Y + +YD
Sbjct: 332 GHAVECRINAED-------PNTFLPSPGK-ITRFHAPGGFGVRWESHIYAGYTVPPYYDS 383
Query: 99 HIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIET 131
I + YG DV+ + K L + GI+T
Sbjct: 384 MIGKLICYGENRDVAIARMKNALQELIIDGIKT 416
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 39 SHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDK 98
H ++ I+ D P +PS K T + G F + Y + +YD
Sbjct: 335 GHAVECRINAED-------PNTFLPSPGK-ITRFHAPGGFGVRWESHIYAGYTVPPYYDS 386
Query: 99 HIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIET 131
I + YG DV+ + K L + GI+T
Sbjct: 387 MIGKLICYGENRDVAIARMKNALQELIIDGIKT 419
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 39 SHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDK 98
H ++ I+ D P +PS K T + G F + Y + +YD
Sbjct: 335 GHAVECRINAED-------PNTFLPSPGK-ITRFHAPGGFGVRWESHIYAGYTVPPYYDS 386
Query: 99 HIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIET 131
I + YG DV+ + K L + GI+T
Sbjct: 387 MIGKLICYGENRDVAIARMKNALQELIIDGIKT 419
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 39 SHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDK 98
H ++ I+ D P +PS K T + G F + Y + +YD
Sbjct: 353 GHAVECRINAED-------PNTFLPSPGK-ITRFHAPGGFGVRWESHIYAGYTVPPYYDS 404
Query: 99 HIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIET 131
I + YG DV+ + K L + GI+T
Sbjct: 405 MIGKLICYGENRDVAIARMKNALQELIIDGIKT 437
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 39 SHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDK 98
H ++ I+ D P +PS K T + G F + Y + +YD
Sbjct: 335 GHAVECRINAED-------PNTFLPSPGK-ITRFHAPGGFGVRWESHIYAGYTVPPYYDS 386
Query: 99 HIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIET 131
I + YG DV+ + K L + GI+T
Sbjct: 387 MIGKLICYGENRDVAIARMKNALQELIIDGIKT 419
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 55 YGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ 91
+G L +DI++Y L+KS +F + R+ ++ +Q
Sbjct: 251 FGATGKLASADIETYLLEKSRVTFQLPAERSYHIFYQ 287
>pdb|3NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 59 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 93
>pdb|1A14|N Chain N, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 5 Residue Linker And
Influenza Virus Neuraminidase
pdb|1NMC|N Chain N, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 15 Residue Linker And
Influenza Virus Neuraminidase
pdb|1NMC|A Chain A, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 15 Residue Linker And
Influenza Virus Neuraminidase
pdb|1F8B|A Chain A, Native Influenza Virus Neuraminidase In Complex With
Neu5ac2en
pdb|1F8C|A Chain A, Native Influenza Neuraminidase In Complex With
4-Amino-2-Deoxy-2,3- Dehydro-N-Neuraminic Acid
pdb|1F8D|A Chain A, Native Influenza Neuraminidase In Complex With
9-Amino-2-Deoxy-2,3- Dehydro-N-Neuraminic Acid
pdb|1F8E|A Chain A, Native Influenza Neuraminidase In Complex With
4,9-diamino-2-deoxy-2, 3-dehydro-n-acetyl-neuraminic
Acid
pdb|1L7F|A Chain A, Crystal Structure Of Influenza Virus Neuraminidase In
Complex With Bcx-1812
pdb|2C4A|A Chain A, Structure Of Neuraminidase Subtype N9 Complexed With 30 Mm
Sialic Acid (Nana, Neu5ac), Crystal Soaked For 3 Hours
At 291 K.
pdb|2C4L|A Chain A, Structure Of Neuraminidase Subtype N9 Complexed With 30 Mm
Sialic Acid (Nana, Neu5ac), Crystal Soaked For 24 Hours
At 291 K And Finally Backsoaked For 30 Min In A
Cryoprotectant Solution Which Did Not Contain Neu5ac
pdb|1BJI|A Chain A, The X-Ray Structure Of A Complex Of Tern N9 Influenza
Virus Neuraminidase Complexed With The Glaxo
6-Carboxamide Sialic Acid Analogue Gr217029
pdb|1MWE|A Chain A, The X-Ray Structure Of A Complex Of Tern N9 Influenza
Virus Neuraminidase Complexed With Sialic Acid At 4
Degrees C Revealing A Second Sialic Acid Binding Site
pdb|2QWI|A Chain A, The X-ray Structure Of A Complex Of
N-acetyl-4-guanidino-6-
Methyl(propyl)carboxamide-4,
5-dihydro-2h-pyran-2-carboxylic Acid And Wildtype Tern
N9 Influenza Virus Neuraminidase
pdb|2QWJ|A Chain A, The X-ray Structure Of A Complex Of 5-n-acetyl-4-amino-6-
Diethylcarboxamide-4,5-dihydro-2h-pyran-2-carboxylic
Acid And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWK|A Chain A, The X-Ray Structure Of A Complex Of
5-N-Acetyl-5-Amino-3-(1-
Ethylpropoxy)-1-Cyclohexene-1-Carboxylic Acid (Gs4071)
And Wildtype Tern N9 Influenza Virus Neuraminidase
pdb|7NN9|A Chain A, Native Influenza Virus Neuraminidase Subtype N9 (Tern)
pdb|1NNC|A Chain A, Influenza Virus Neuraminidase Subtype N9 (Tern) Complexed
With 4- Guanidino-Neu5ac2en Inhibitor
Length = 388
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 59 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 93
>pdb|6NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 59 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 93
>pdb|1XOE|A Chain A, N9 Tern Influenza Neuraminidase Complexed With
(2r,4r,5r)-5-(1-
Acetylamino-3-Methyl-Butyl-Pyrrolidine-2,
4-Dicarobyxylic Acid 4- Methyl Esterdase Complexed With
pdb|1XOG|A Chain A, N9 Tern Influenza Neuraminidase Complexed With A
2,5-Disubstituted Tetrahydrofuran-5-Carboxylic Acid
pdb|1NNB|A Chain A, Three-Dimensional Structure Of Influenza A N9
Neuraminidase And Its Complex With The Inhibitor 2-Deoxy
2,3-Dehydro-N-Acetyl Neuraminic Acid
pdb|1NNA|A Chain A, Three-dimensional Structure Of Influenza A N9
Neuraminidase And Its Complex With The Inhibitor 2-deoxy
2,3-dehydro-n-acetyl Neuraminic Acid
Length = 387
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 58 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 92
>pdb|4NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 59 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 93
>pdb|1NCC|N Chain N, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
Length = 389
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 60 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 94
>pdb|1INY|A Chain A, A Sialic Acid Derived Phosphonate Analog Inhibits
Different Strains Of Influenza Virus Neuraminidase With
Different Efficiencies
Length = 388
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 59 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 93
>pdb|5NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 59 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 93
>pdb|1NCA|N Chain N, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
pdb|4DGR|A Chain A, Influenza Subtype 9 Neuraminidase Benzoic Acid Inhibitor
Complex
Length = 389
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 60 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 94
>pdb|1NCB|N Chain N, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
Length = 389
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 60 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 94
>pdb|1L7G|A Chain A, Crystal Structure Of E119g Mutant Influenza Virus
Neuraminidase In Complex With Bcx-1812
Length = 388
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 59 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 93
>pdb|1L7H|A Chain A, Crystal Structure Of R292k Mutant Influenza Virus
Neuraminidase In Complex With Bcx-1812
pdb|2QWA|A Chain A, The X-ray Structure Of A Drug Resistant Variant R292k Of
Tern N9 Influenza Virus Neuraminidase
pdb|2QWB|A Chain A, The X-ray Structure Of A Complex Of Sialic Acid And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWC|A Chain A, The X-Ray Structure Of A Complex Of Neu5ac2en And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWD|A Chain A, The X-Ray Structure Of A Complex Of 4-Amino-Neu5ac2en And
A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
pdb|2QWE|A Chain A, The X-ray Structure Of A Complex Of 4-guanidino-neu5ac2en
And A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
pdb|2QWF|A Chain A, The X-Ray Structure Of A Complex Of
N-Acetyl-4-Guanidino-6-
Methyl(Propyl)carboxamide-4,
5-Dihydro-2h-Pyran-2-Carboxylic Acid And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWG|A Chain A, The X-Ray Structure Of A Complex Of 5-N-Acetyl-4-Amino-6-
Diethylcarboxamide-4,5-Dihydro-2h-Pyran-2-Carboxylic
Acid And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWH|A Chain A, The X-Ray Structure Of A Complex Of
5-N-Acetyl-5-Amino-3-(1-
Ethylpropoxy)-1-Cyclohexene-1-Carboxylic Acid (Gs4071)
And A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
Length = 388
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 100 IKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDV 137
I+GK S G +HD S Q + L W P++ TV NS V
Sbjct: 59 IRGKHSNGTIHDRS--QYRALISW-PLSSPPTVYNSRV 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,112,188
Number of Sequences: 62578
Number of extensions: 154575
Number of successful extensions: 329
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 29
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)