BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030681
         (173 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
           GN=At5g01610 PE=1 SV=1
          Length = 170

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 50  DLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQ--LVWYDKHIKGKLSYG 107
           +LL  Y LP G+ P D  +Y  D+ T   ++ +   C V ++   ++ +   + G L  G
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115

Query: 108 AVHDVSGIQAKKLFLWLPVTGIET 131
            + DV GI+  K+ +W+ VT I T
Sbjct: 116 KLTDVEGIKT-KVMIWVKVTSIST 138


>sp|Q9LS16|U76E7_ARATH UDP-glycosyltransferase 76E7 OS=Arabidopsis thaliana GN=UGT76E7
          PE=2 SV=1
          Length = 449

 Score = 33.5 bits (75), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 11/71 (15%)

Query: 24 FSLTITQKPFNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMT 83
          FS+T+ Q  FN+   S+      D+ D      +P+ L  SD+K+       G F I++ 
Sbjct: 37 FSITVVQTKFNYLNPSN------DLSDF-QFVTIPENLPVSDLKNL----GPGRFLIKLA 85

Query: 84 RTCYVHFQQLV 94
            CYV F+ L+
Sbjct: 86 NECYVSFKDLL 96


>sp|P07659|RPOL_BPT3 DNA-directed RNA polymerase OS=Enterobacteria phage T3 GN=1 PE=3
           SV=1
          Length = 884

 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 89  HFQQLVWYDKHIKGKLSYGAVHDVSGI---QAKKLFLWLPVTGIETVKNSDVLRFFVGAL 145
           H +  V Y     G  S+  +HD  G     A KLF  +  T + T +N+DVL  F    
Sbjct: 791 HLRMTVVYAHEKYGIESFALIHDSFGTIPADAGKLFKAVRETMVITYENNDVLADFYSQF 850

Query: 146 SEDLPAEQFQEIPQCKSK 163
           ++ L   Q  ++P    K
Sbjct: 851 ADQLHETQLDKMPPLPKK 868


>sp|P22520|CVAB_ECOLX Colicin V secretion/processing ATP-binding protein CvaB
           OS=Escherichia coli GN=cvaB PE=3 SV=1
          Length = 698

 Score = 32.3 bits (72), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 115 IQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKVSQRSSISSI 173
           ++  +  L  P  GI  +   ++ R+F G   E  P  +FQ     ++++S RS I+SI
Sbjct: 112 VKRNRYVLHDPARGIRYISREEMSRYFTGVALEVWPGSEFQS-ETLQTRISLRSLINSI 169


>sp|O88879|APAF_MOUSE Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1
           PE=1 SV=3
          Length = 1249

 Score = 30.8 bits (68), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 124 LPV-TGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKS 162
           +PV +G+   K  ++L  FV    EDLPAE    I +CK 
Sbjct: 280 VPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKG 319


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,873,707
Number of Sequences: 539616
Number of extensions: 2339663
Number of successful extensions: 4590
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4586
Number of HSP's gapped (non-prelim): 8
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)