Query 030681
Match_columns 173
No_of_seqs 104 out of 340
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 100.0 3.9E-44 1.3E-48 290.5 6.9 117 43-163 49-167 (170)
2 2nzc_A Hypothetical protein; s 30.7 16 0.00053 26.1 0.9 17 106-122 66-82 (86)
3 2k8q_A Protein SHQ1; beta-sand 22.9 60 0.002 24.8 3.0 20 67-86 63-82 (134)
4 2npb_A Selenoprotein W; struct 22.7 72 0.0025 22.7 3.3 32 48-86 23-56 (96)
5 3p7j_A Heterochromatin protein 22.2 51 0.0018 23.4 2.3 29 53-83 18-46 (87)
6 1uw7_A NSP9; viral protein, re 20.7 94 0.0032 24.2 3.7 24 68-91 85-108 (143)
7 3ee7_A Replicase polyprotein 1 20.2 85 0.0029 23.8 3.3 24 68-91 55-78 (121)
8 2oka_A Hypothetical protein; P 19.0 1.4E+02 0.0049 21.6 4.2 32 48-86 26-58 (104)
9 2l32_A Small archaeal modifier 18.8 56 0.0019 21.9 1.8 17 44-60 19-35 (74)
10 2p0g_A Selenoprotein W-related 18.7 1.4E+02 0.0049 21.6 4.2 32 48-86 24-56 (105)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=100.00 E-value=3.9e-44 Score=290.49 Aligned_cols=117 Identities=24% Similarity=0.500 Sum_probs=112.3
Q ss_pred CCCCCHHHhhhhcCCCCCCCCCCceeEEEecCCceEEEEEcceEEEEEe--EEEEEcceEEEEEecCccccccceEEEEE
Q 030681 43 QSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ--QLVWYDKHIKGKLSYGAVHDVSGIQAKKL 120 (173)
Q Consensus 43 ~~~~tayelL~~~gLP~GLLP~~V~~Y~l~~~tG~f~V~L~~~C~~~f~--~~v~Y~~~ItG~l~~G~I~~L~GVkvK~l 120 (173)
.+.+++||||++||||+||||++|++|+||++||+|||+|+++|+|+|+ |+|+|+++|||+|++|+|++|+|||+|+|
T Consensus 49 ~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~L 128 (170)
T 1ydu_A 49 KMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVM 128 (170)
T ss_dssp TTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESS
T ss_pred cccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEEE
Confidence 6678999999999999999999999999999999999999999999996 79999999999999999999999999999
Q ss_pred EeecceeEEEEecCCCeEEEEEceeeecccccccCCCCCCCCc
Q 030681 121 FLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSK 163 (173)
Q Consensus 121 f~Wv~I~~I~Vd~~~~~I~F~vG~isksFP~s~F~~~P~C~~~ 163 (173)
+|++|++|.| ++|+|+|++|+ +++||+++|+.+|+|...
T Consensus 129 -lWv~V~eI~v--~~~kI~F~vGi-~ksfp~saFe~~~~c~~~ 167 (170)
T 1ydu_A 129 -IWVKVTSIST--DASKVYFTAGM-KKSRSRDAYGVQRNGLRV 167 (170)
T ss_dssp -SEESCCCBEE--CSSSEECTTSS-SSCCCHHHHSSCCCCCCT
T ss_pred -EEeeEEEEEE--eCCEEEEEEcC-cccccHHHhcCCcCCccc
Confidence 9999999996 79999999985 999999999999999864
No 2
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=30.72 E-value=16 Score=26.14 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.4
Q ss_pred cCccccccceEEEEEEe
Q 030681 106 YGAVHDVSGIQAKKLFL 122 (173)
Q Consensus 106 ~G~I~~L~GVkvK~lf~ 122 (173)
.|+|.+|+||+||-+..
T Consensus 66 ~gkLg~i~GV~vKt~~~ 82 (86)
T 2nzc_A 66 SGKLGQISGVRVKTVPL 82 (86)
T ss_dssp HHHHHTSTTEEEEEEEC
T ss_pred HHHhCCCCCEEEEEEEe
Confidence 47999999999998753
No 3
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=22.89 E-value=60 Score=24.80 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=17.0
Q ss_pred eeEEEecCCceEEEEEcceE
Q 030681 67 KSYTLDKSTGSFSIEMTRTC 86 (173)
Q Consensus 67 ~~Y~l~~~tG~f~V~L~~~C 86 (173)
..-.||.++|.|.|++++..
T Consensus 63 ~kA~YD~d~~~~~VtLpK~~ 82 (134)
T 2k8q_A 63 STAQYDSKDECINVKVAKLN 82 (134)
T ss_dssp CEEEEETTTTEEEEEEEESS
T ss_pred cceeEeccCCEEEEEEeCCC
Confidence 56888988999999998765
No 4
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=22.71 E-value=72 Score=22.72 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHhhhhcCCCCCCCCCCce-eEEEec-CCceEEEEEcceE
Q 030681 48 VHDLLPLYGLPKGLIPSDIK-SYTLDK-STGSFSIEMTRTC 86 (173)
Q Consensus 48 ayelL~~~gLP~GLLP~~V~-~Y~l~~-~tG~f~V~L~~~C 86 (173)
+-++|.+| |..+. +..+.+ ++|.|+|++++.-
T Consensus 23 aqeLl~~F-------p~~l~V~~~l~p~~~G~FEV~vng~l 56 (96)
T 2npb_A 23 KEKLEHEF-------PGCLDICGEGTPQVTGFFEVTVAGKL 56 (96)
T ss_dssp HHHHHHHS-------BTTEEEEECCCSSCCSCCEEEETTEE
T ss_pred HHHHHHhC-------CcceEEEEEEcCCCCcEEEEEECCEE
Confidence 34666665 55555 666665 4799999998743
No 5
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=22.18 E-value=51 Score=23.41 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=21.1
Q ss_pred hhcCCCCCCCCCCceeEEEecCCceEEEEEc
Q 030681 53 PLYGLPKGLIPSDIKSYTLDKSTGSFSIEMT 83 (173)
Q Consensus 53 ~~~gLP~GLLP~~V~~Y~l~~~tG~f~V~L~ 83 (173)
+.+||.+||=|+.|.+.+ + .+|.+...++
T Consensus 18 k~~GF~RGle~EkIlgat-~-~~Gel~fLVK 46 (87)
T 3p7j_A 18 GSTGFDRGLEAEKILGAS-D-NNGRLTFLIQ 46 (87)
T ss_dssp --CTTTTTCCEEEEEEEE-E-ETTEEEEEEE
T ss_pred CCCCccCCCCceEEeeEE-c-cCCcEEEEEE
Confidence 458999999999998886 3 3888665544
No 6
>1uw7_A NSP9; viral protein, replicase protein, RNA-binding; 2.8A {Sars coronavirus hku-39849} SCOP: b.140.1.1
Probab=20.73 E-value=94 Score=24.16 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=18.8
Q ss_pred eEEEecCCceEEEEEcceEEEEEe
Q 030681 68 SYTLDKSTGSFSIEMTRTCYVHFQ 91 (173)
Q Consensus 68 ~Y~l~~~tG~f~V~L~~~C~~~f~ 91 (173)
.++.|..+|...+.|+-+|.|..+
T Consensus 85 k~e~d~G~g~v~iELePPckF~v~ 108 (143)
T 1uw7_A 85 RFPKSDGTGTIYTELEPPCRFVTD 108 (143)
T ss_dssp EEECTTSSCEEEEEBCCCCEEEEC
T ss_pred EEEecCCceEEEEecCCCcEEEEE
Confidence 455555566999999999999775
No 7
>3ee7_A Replicase polyprotein 1A; GXXXG, dimerization, SARS-COV, helix-helix, hydrolase, membr metal-binding, protease, RNA-binding, thiol protease; 2.60A {Sars coronavirus} SCOP: b.140.1.1 PDB: 1qz8_A
Probab=20.15 E-value=85 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=17.6
Q ss_pred eEEEecCCceEEEEEcceEEEEEe
Q 030681 68 SYTLDKSTGSFSIEMTRTCYVHFQ 91 (173)
Q Consensus 68 ~Y~l~~~tG~f~V~L~~~C~~~f~ 91 (173)
.++.|..||...+.|+-+|.|..+
T Consensus 55 k~e~d~G~g~v~iELePPckF~v~ 78 (121)
T 3ee7_A 55 RFPKSDGTGTIYTELEPPCRFVTD 78 (121)
T ss_dssp EECCC--CEEEEEEBCCCEEEEEC
T ss_pred EEEecCCCCeEEEecCCCcEEEEE
Confidence 444554459999999999999875
No 8
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=18.99 E-value=1.4e+02 Score=21.59 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=21.7
Q ss_pred HHHhhhhcCCCCCCCCCCceeEEEec-CCceEEEEEcceE
Q 030681 48 VHDLLPLYGLPKGLIPSDIKSYTLDK-STGSFSIEMTRTC 86 (173)
Q Consensus 48 ayelL~~~gLP~GLLP~~V~~Y~l~~-~tG~f~V~L~~~C 86 (173)
+.|+|.+|+ +.+.+.++.+ ++|.|+|++++.-
T Consensus 26 aqeLl~tF~-------~~l~~v~l~P~~~G~FEV~vng~l 58 (104)
T 2oka_A 26 AQELLSTFA-------DDLGKVCLEPGTGGVFRITCDGVQ 58 (104)
T ss_dssp HHHHHHHST-------TTCSEEEEEEECTTCEEEEETTEE
T ss_pred HHHHHHHcC-------cccceEEEEeCCCceEEEEECCEE
Confidence 456666643 4455777765 4699999998754
No 9
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=18.79 E-value=56 Score=21.90 Aligned_cols=17 Identities=18% Similarity=0.004 Sum_probs=14.4
Q ss_pred CCCCHHHhhhhcCCCCC
Q 030681 44 SIIDVHDLLPLYGLPKG 60 (173)
Q Consensus 44 ~~~tayelL~~~gLP~G 60 (173)
+..|+.|+|+++|+|..
T Consensus 19 ~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 19 DDGTYADLVRAVDLSPH 35 (74)
T ss_dssp TTCSHHHHHHTTCCCSS
T ss_pred CCCcHHHHHHHcCCCcc
Confidence 45799999999999853
No 10
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=18.69 E-value=1.4e+02 Score=21.62 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=21.8
Q ss_pred HHHhhhhcCCCCCCCCCCceeEEEec-CCceEEEEEcceE
Q 030681 48 VHDLLPLYGLPKGLIPSDIKSYTLDK-STGSFSIEMTRTC 86 (173)
Q Consensus 48 ayelL~~~gLP~GLLP~~V~~Y~l~~-~tG~f~V~L~~~C 86 (173)
+.|||.+| |+.+.+.++.+ ++|.|+|++++.-
T Consensus 24 aqeLl~tF-------~~~l~~v~l~P~~~G~FEV~vng~l 56 (105)
T 2p0g_A 24 SQELLHTF-------SEEIEYVALHPDTGGRFEIFCNGVQ 56 (105)
T ss_dssp HHHHHHHT-------TTTEEEEEEEEESTTCEEEEETTEE
T ss_pred HHHHHHHc-------CcccceEEEEeCCCceEEEEECCEE
Confidence 44666664 34456777865 4699999998754
Done!