BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030682
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 29/191 (15%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANY-------DLAGVVEHLLLHPYRKSLSPAK 53
+SLYEAS L++ GE+ LDEA F+ +HL +LA V H L P
Sbjct: 152 LSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELP--------- 202
Query: 54 NFFHGNFQGSEYIWILD-----------LQELANMDFKLVQSLHQKEIVQISSWWRELGL 102
H Q E +W ++ L ELA +D+ ++QS++Q+++ + S WWR +GL
Sbjct: 203 --LHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGL 260
Query: 103 AKKLEFAREQPVKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLF 162
A KL FAR++ ++ + W++ +P S R + K SFV IIDDI+DV G LD L LF
Sbjct: 261 ATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELF 320
Query: 163 TEAINRYDISS 173
T+A+ R+D+++
Sbjct: 321 TDAVERWDVNA 331
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANY------DLAGVVEHLLLHPYRKSLSPAKN 54
++LYEAS + +D L++A FS HL + L V H L K + +
Sbjct: 135 LNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVET 194
Query: 55 -FFHGNFQGSEYIWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQP 113
FF + E L A +DF L+Q LH++E+ Q+S WW++L L +AR++
Sbjct: 195 RFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRV 254
Query: 114 VKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDIS 172
V+ Y W++ + +P S R+ L K IS + I+DD FD G + L +T+AI R+DI+
Sbjct: 255 VECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN 313
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANY------DLAGVVEHLLLHPYRKSLSPAKN 54
++LYEAS + +D L++A FS HL + L V H L K + +
Sbjct: 150 LNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVET 209
Query: 55 -FFHGNFQGSEYIWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQP 113
FF + E L A +DF L+Q LH++E+ Q+S WW++L L +AR++
Sbjct: 210 RFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRV 269
Query: 114 VKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDIS 172
V+ Y W++ + +P S R+ L K IS + I+DD FD G + L +T+AI R+DI+
Sbjct: 270 VECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN 328
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANY------DLAGVVEHLLLHPYRKSLSPAKN 54
++LYEAS + +D L++A FS HL + L V H L K + +
Sbjct: 148 LNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVET 207
Query: 55 -FFHGNFQGSEYIWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQP 113
FF + E L A +DF L+Q LH++E+ Q+S WW++L L +AR++
Sbjct: 208 RFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRV 267
Query: 114 VKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDIS 172
V+ Y W++ + +P S R+ L K IS + I+DD FD G + L +T+AI R+DI+
Sbjct: 268 VECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN 326
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANY------DLAGVVEHLLLHPYRKSLSPAKN 54
++LYEAS + +D L++A FS HL + L V H L K + +
Sbjct: 148 LNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVET 207
Query: 55 -FFHGNFQGSEYIWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQP 113
FF + E L A +DF L+Q LH++E+ Q+S WW++L L +AR++
Sbjct: 208 RFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRV 267
Query: 114 VKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDIS 172
V+ Y W++ + +P S R+ L K IS + I+DD FD G + L +T+AI R+DI+
Sbjct: 268 VECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN 326
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANY------DLAGVVEHLLLHPYRKSLSPAKN 54
++LYEAS + +D L++A FS HL + L V H L K + +
Sbjct: 148 LNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVET 207
Query: 55 -FFHGNFQGSEYIWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQP 113
FF + E L A +DF L+Q LH++E+ Q+S WW++L L +AR++
Sbjct: 208 RFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRV 267
Query: 114 VKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDIS 172
V+ Y W++ + +P S R+ L K IS + I+DD FD G + L +T+AI R+DI+
Sbjct: 268 VECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN 326
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANY------DLAGVVEHLLLHPYRKSLSPAKN 54
++LYEAS + +D L++A FS HL + L V H L K + +
Sbjct: 148 LNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVET 207
Query: 55 -FFHGNFQGSEYIWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQP 113
FF + E L A +DF L+Q LH++E+ Q+S WW++L L +AR++
Sbjct: 208 RFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRV 267
Query: 114 VKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDIS 172
V+ Y W++ + +P S R+ L K IS + I+DD FD G + L +T+AI R+DI+
Sbjct: 268 VECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN 326
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANY------DLAGVVEHLLLHPYRKSLSPAKN 54
++LYEAS + +D L++A FS HL + L V H L K + +
Sbjct: 150 LNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVET 209
Query: 55 -FFHGNFQGSEYIWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQP 113
FF + E L A +DF L+Q LH++E+ Q+S WW++L L +AR++
Sbjct: 210 RFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRV 269
Query: 114 VKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDIS 172
V+ Y W++ + +P S R+ L K IS + I+DD FD G + L +T+AI R+DI+
Sbjct: 270 VECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN 328
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLA------NYDLAGVVEHLLLHPYRKSLSPAKN 54
+ LY+AS L + GED LDEA F+ HL+ ++ L+ V H L R+ L +
Sbjct: 155 LELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEA 214
Query: 55 FFHGNFQGSEYIWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQPV 114
+ + L E A +DF ++Q LH+KE+ +I WW++L +KL +AR++ V
Sbjct: 215 RHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVV 274
Query: 115 KWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDI 171
+ Y W + +P S R LTK I+ I+DD +D + L +T AI R+DI
Sbjct: 275 EGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDI 331
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANY------DLAGVVEHLLLHPYRKSLSPAKN 54
++LYEAS + +D L++A FS HL + L V H L K + +
Sbjct: 148 LNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVET 207
Query: 55 -FFHGNFQGSEYIWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQP 113
FF + E L A +DF L+Q LH++E+ Q+S WW++L L +AR++
Sbjct: 208 RFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRV 267
Query: 114 VKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDIS 172
V+ Y ++ + +P S R+ L K IS + I+DD FD G + L +T+AI R+DI+
Sbjct: 268 VECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN 326
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANY------DLAGVVEHLLLHPYRKSLSPAKN 54
++LYEAS + +D L++A FS HL + L V H L K + +
Sbjct: 148 LNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVET 207
Query: 55 -FFHGNFQGSEYIWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQP 113
FF + E L A +DF L+Q LH++E+ Q+S WW++L L +AR++
Sbjct: 208 RFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRV 267
Query: 114 VKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDIS 172
V+ Y ++ + +P S R+ L K IS + I+DD FD G + L +T+AI R+DI+
Sbjct: 268 VECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN 326
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 94/186 (50%), Gaps = 19/186 (10%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHL-------ANYDLAGVVEHLLLHP--YRKSLSP 51
+ LYEAS LS GE+ L A F+ L + +L +E L P +R +
Sbjct: 170 LQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPN 229
Query: 52 AKNFFHGNFQGSEYIWILDLQ----ELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLE 107
A++F Y D+ ELA +DF +VQ+ Q+E+ + S WW GL +L
Sbjct: 230 ARSFIDA------YKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELP 283
Query: 108 FAREQPVKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAIN 167
F R++ V+ Y W+ ++RI LTK + V IDD+FD+ G L+ L LFT AI
Sbjct: 284 FVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQ 343
Query: 168 RYDISS 173
R+DI S
Sbjct: 344 RWDIES 349
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 18/187 (9%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHL-ANYDLAG--VVEHLLLHPYRKSLSPAKNFFH 57
+ LYEAS L GED L+ A F+ L D G + E+LLL R SL H
Sbjct: 146 LQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLW-IRHSLDLP---LH 201
Query: 58 GNFQGSEYIWILD-----------LQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKL 106
Q E W +D + ELA ++F ++Q+ HQ+E+ +S WW L +KL
Sbjct: 202 WRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKL 261
Query: 107 EFAREQPVKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAI 166
F R++ V+ + W++ F +QR I +IDDI+DV G LD L LFT+
Sbjct: 262 PFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTF 321
Query: 167 NRYDISS 173
R+D S
Sbjct: 322 KRWDTES 328
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 27/198 (13%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLA--------------NYDLAGVVEHLLLHPYR 46
++LY ASQL+ GE+ LDEA F+ +L +L+ +++ L +
Sbjct: 395 LNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWH 454
Query: 47 KSLSPAKNFFHGNFQGSEYIWILD------------LQELANMDFKLVQSLHQKEIVQIS 94
S+ + + +Y I EL +DF ++QS+HQ+E+ ++
Sbjct: 455 ASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVT 514
Query: 95 SWWRELGLAKKLEFAREQPVKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCG 154
SW+R+ GL FARE+P+++Y A +P + R TK ++DD++D G
Sbjct: 515 SWFRDSGLPL-FTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYG 573
Query: 155 ALDALTLFTEAINRYDIS 172
LD L LFTEA+ R+D+S
Sbjct: 574 TLDELKLFTEAVRRWDLS 591
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 27/198 (13%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLAN--------------YDLAGVVEHLLLHPYR 46
+++ S +S GE ++EA + +L N ++ G VE+ L +P+
Sbjct: 367 LNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWH 426
Query: 47 KSLSPAKNFFHGNFQGSEYIWILDLQ------------ELANMDFKLVQSLHQKEIVQIS 94
KS+ + + G + +W+ ELA +DF VQS+HQ E+ +
Sbjct: 427 KSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLR 486
Query: 95 SWWRELGLAKKLEFAREQPVKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCG 154
WW+ G L F RE+ + Y + +P S R TK +F I+DD++D G
Sbjct: 487 RWWKSSGFTD-LNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHG 545
Query: 155 ALDALTLFTEAINRYDIS 172
+LD L LFTE++ R+D+S
Sbjct: 546 SLDDLKLFTESVKRWDLS 563
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHLANYDLAGVVEHLLLHPYRKSLSPAKNFFHGNF 60
+ LYEAS L GE L+ A F+ L G V+ LL SL H
Sbjct: 142 LQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIP---LHWRI 198
Query: 61 QGSEY-IWI------LDLQ----ELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFA 109
+ +WI D+ ELA +D +VQ+ Q+E+ + WWR G +KL FA
Sbjct: 199 KRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFA 258
Query: 110 REQPVKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTEAINRY 169
R++ V+ Y W+ + RI + K + + +IDDI+DV G L+ L FT+ I R+
Sbjct: 259 RDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRW 318
Query: 170 DISS 173
DI+S
Sbjct: 319 DINS 322
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 24/193 (12%)
Query: 1 MSLYEASQLSIGGEDGLDEAGHFSATHL---------ANYDLAGVVEHLLLHPYRKSLSP 51
++L+ AS L+ E +D+A F+ +L N L +E+++ +P+ S+
Sbjct: 343 VNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPR 402
Query: 52 AKNFFHGNFQGSEYIWILD------------LQELANMDFKLVQSLHQKEIVQISSWWRE 99
+ + + Y+W ELA +DF +VQSLHQ+E+ ++ WW+E
Sbjct: 403 LEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKE 462
Query: 100 LGLAKKLEFAREQPVKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDAL 159
G+A + F R + + Y +S A F +P S RI TK + DD+ D+ LD L
Sbjct: 463 SGMA-DINFTRHRVAEVY-FSSATF-EPEYSATRIAFTKIGCLQVLFDDMADIFATLDEL 519
Query: 160 TLFTEAINRYDIS 172
FTE + R+D S
Sbjct: 520 KSFTEGVKRWDTS 532
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 27/130 (20%)
Query: 2 SLYEASQLSIGGEDGLDEAGHFSATHLAN--------------YDLAGVVEHLLLHPYRK 47
+LY ASQL+ E+ L A FS +L DL G + L P+
Sbjct: 342 NLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYA 401
Query: 48 SLSPAKN-FFHGNFQGSEYIWILDL------------QELANMDFKLVQSLHQKEIVQIS 94
SL + F+ + G +WI ELA D+ Q+ HQ E
Sbjct: 402 SLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQ 461
Query: 95 SWWRELGLAK 104
W+ E L++
Sbjct: 462 KWYEENRLSE 471
>pdb|1MG5|A Chain A, Crystal Structure Of Drosophila Melanogaster Alcohol
Dehydrogenase Complexed With Nadh And Acetate At 1.6 A
pdb|1MG5|B Chain B, Crystal Structure Of Drosophila Melanogaster Alcohol
Dehydrogenase Complexed With Nadh And Acetate At 1.6 A
Length = 255
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 36 VVEHLLLHPYRKSLSPAKNFFHG-NFQGSEYIWILDLQEL 74
V E LL HP + SL+ A+NF + IW LDL L
Sbjct: 203 VAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDLGTL 242
>pdb|2K9S|A Chain A, Solution Structure Of Dna Binding Domain Of E. Coli Arac
Length = 107
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 14 EDGLDEAGHFSATHLA--NYDLAGVVEHLLLHPYRKSLSPAKNFFHGNFQGSEYIWILDL 71
++ + EA + + HLA N+D+A V +H+ L P R S + F S W D
Sbjct: 2 DNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLS-----HLFRQQLGISVLSWRED- 55
Query: 72 QELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAR 110
Q ++ KL+ S + I + R +G +L F+R
Sbjct: 56 QRISQA--KLLLSTTRMPIATVG---RNVGFDDQLYFSR 89
>pdb|2X1C|A Chain A, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|B Chain B, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|C Chain C, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|D Chain D, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
Length = 357
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 7 SQLSIGGEDGLDEAG---HFSATHLANYDLAGVVEHLLLHPYRKSLSPAKNF----FHGN 59
++ I G+ G + AG +++A HL GV H+ L +S SP++ + G
Sbjct: 147 TEAGIIGKVGFNSAGVAVNYNALHLQGLRPTGVPSHIALRIALESTSPSQAYDRIVEQGG 206
Query: 60 FQGSEYIWILDLQELANMDF 79
S +I + + E ++F
Sbjct: 207 MAASAFIMVGNGHEAFGLEF 226
>pdb|2X1D|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1E|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
Length = 357
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 7 SQLSIGGEDGLDEAG---HFSATHLANYDLAGVVEHLLLHPYRKSLSPAKNF----FHGN 59
++ I G+ G + AG +++A HL GV H+ L +S SP++ + G
Sbjct: 147 TEAGIIGKVGFNSAGVAVNYNALHLQGLRPTGVPSHIALRIALESTSPSQAYDRIVEQGG 206
Query: 60 FQGSEYIWILDLQELANMDF 79
S +I + + E ++F
Sbjct: 207 MAASAFIMVGNGHEAFGLEF 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,556,587
Number of Sequences: 62578
Number of extensions: 221272
Number of successful extensions: 422
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 24
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)