Query 030682
Match_columns 173
No_of_seqs 115 out of 701
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02279 ent-kaur-16-ene synth 100.0 5E-67 1.1E-71 497.0 11.4 170 1-172 360-555 (784)
2 cd00684 Terpene_cyclase_plant_ 100.0 4.7E-65 1E-69 467.8 13.6 170 1-172 142-322 (542)
3 PLN02592 ent-copalyl diphospha 100.0 1.7E-64 3.6E-69 479.4 13.1 170 1-172 406-611 (800)
4 PF03936 Terpene_synth_C: Terp 99.8 2E-21 4.4E-26 160.6 7.4 101 71-171 1-101 (270)
5 cd00868 Terpene_cyclase_C1 Ter 99.6 6.7E-16 1.5E-20 128.5 7.6 88 85-172 1-88 (284)
6 cd00687 Terpene_cyclase_nonpla 98.0 1.6E-05 3.4E-10 67.5 6.5 79 92-171 18-98 (303)
7 PRK09177 xanthine-guanine phos 60.7 3 6.5E-05 32.8 0.1 24 141-164 85-108 (156)
8 PF00156 Pribosyltran: Phospho 58.1 3.7 8E-05 29.7 0.2 22 143-164 91-112 (125)
9 COG2236 Predicted phosphoribos 53.7 6.4 0.00014 32.5 1.0 23 143-165 90-112 (192)
10 TIGR00201 comF comF family pro 46.9 5.5 0.00012 31.9 -0.4 21 143-163 155-175 (190)
11 PRK11595 DNA utilization prote 46.0 8.2 0.00018 31.9 0.5 21 143-163 190-210 (227)
12 PRK05205 bifunctional pyrimidi 44.3 8.5 0.00018 30.5 0.3 21 143-163 98-118 (176)
13 COG1040 ComFC Predicted amidop 41.2 12 0.00025 31.3 0.7 22 143-164 187-208 (225)
14 PRK09162 hypoxanthine-guanine 40.5 10 0.00022 30.3 0.2 22 143-164 100-121 (181)
15 PRK02304 adenine phosphoribosy 38.4 14 0.0003 29.1 0.7 24 141-164 115-138 (175)
16 TIGR01090 apt adenine phosphor 38.2 12 0.00027 29.3 0.4 23 142-164 111-133 (169)
17 TIGR01203 HGPRTase hypoxanthin 37.6 13 0.00028 29.4 0.4 22 142-163 86-107 (166)
18 COG2976 Uncharacterized protei 37.0 26 0.00056 29.4 2.1 16 87-102 8-23 (207)
19 PRK07322 adenine phosphoribosy 36.8 14 0.0003 29.5 0.5 22 142-163 122-143 (178)
20 TIGR01367 pyrE_Therm orotate p 32.7 18 0.00039 29.2 0.5 23 142-164 107-129 (187)
21 PRK15423 hypoxanthine phosphor 32.4 18 0.0004 29.1 0.5 22 143-164 95-116 (178)
22 PRK07199 phosphoribosylpyropho 29.2 22 0.00047 31.0 0.5 21 142-162 213-233 (301)
23 PRK13812 orotate phosphoribosy 29.0 27 0.00059 27.9 1.0 23 142-164 109-131 (176)
24 TIGR00336 pyrE orotate phospho 28.8 23 0.0005 28.0 0.5 23 142-164 110-132 (173)
25 PLN02297 ribose-phosphate pyro 28.1 23 0.00049 31.5 0.4 21 143-163 233-253 (326)
26 PF14165 YtzH: YtzH-like prote 27.3 69 0.0015 23.4 2.7 27 142-168 10-37 (87)
27 PRK08558 adenine phosphoribosy 27.3 28 0.00062 29.3 0.8 26 140-165 176-201 (238)
28 PLN02238 hypoxanthine phosphor 26.9 23 0.00051 28.6 0.2 23 142-164 99-121 (189)
29 PRK00455 pyrE orotate phosphor 25.4 33 0.00072 27.7 0.9 23 142-164 115-137 (202)
30 PTZ00149 hypoxanthine phosphor 23.6 28 0.00062 29.6 0.2 21 143-163 153-173 (241)
31 PRK02458 ribose-phosphate pyro 23.2 30 0.00064 30.5 0.2 21 142-162 220-240 (323)
32 KOG2254 Predicted endo-1,3-bet 23.1 79 0.0017 31.0 3.0 39 132-170 418-457 (747)
33 PRK02269 ribose-phosphate pyro 22.7 36 0.00077 29.9 0.6 22 142-163 219-240 (320)
34 PRK02277 orotate phosphoribosy 22.0 38 0.00082 27.5 0.6 24 141-164 141-164 (200)
35 PF03997 VPS28: VPS28 protein; 20.9 2.9E+02 0.0063 22.7 5.6 68 87-162 48-124 (188)
36 PF12626 PolyA_pol_arg_C: Poly 20.9 1.4E+02 0.003 22.8 3.5 28 75-102 65-92 (124)
37 PRK04923 ribose-phosphate pyro 20.2 46 0.001 29.3 0.8 21 142-162 219-239 (319)
38 PF03713 DUF305: Domain of unk 20.1 1.9E+02 0.0041 22.0 4.1 35 67-105 27-61 (151)
No 1
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=5e-67 Score=496.96 Aligned_cols=170 Identities=29% Similarity=0.450 Sum_probs=163.9
Q ss_pred CcccccccCCCCCChHHHHHHHHHHhhcC-------------CCChHHHHHHHccCccccCChH--hhhhhhhhccCCcc
Q 030682 1 MSLYEASQLSIGGEDGLDEAGHFSATHLA-------------NYDLAGVVEHLLLHPYRKSLSP--AKNFFHGNFQGSEY 65 (173)
Q Consensus 1 L~LYeAS~l~~~gE~iLdea~~fs~~~L~-------------~~~L~~~V~~aL~~P~~~~~~r--ar~yI~~~Y~~~~~ 65 (173)
||||||||++||||+|||||+.||++||+ +++|+++|+|||++|||+++|| ||+|| ++|+.++.
T Consensus 360 L~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI-~~Y~~~~~ 438 (784)
T PLN02279 360 LELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLANRRSI-ENYAVDDT 438 (784)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHHHHHHHH-HHhccccc
Confidence 68999999999999999999999999998 2469999999999999999999 99999 99988874
Q ss_pred -----------hhhHHHHHHHHhhhHHHhHhhHHHHHHHHHHHHhhchhhcchhhccchhhHHHHHhhcccCCCchHHHH
Q 030682 66 -----------IWILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQPVKWYVWSMACFTDPNLSWQRI 134 (173)
Q Consensus 66 -----------~~n~~lLelAklDFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~Ri 134 (173)
++|++||||||+|||+||++||+||++|+|||+++||. +|||||||+||||||++|++||||||.+|+
T Consensus 439 ~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L~-~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi 517 (784)
T PLN02279 439 RILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRLD-KLKFARQKLAYCYFSAAATLFSPELSDARL 517 (784)
T ss_pred hhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCCc-cCCchhhHHHHHHHHHHHhhcCchhhHHHH
Confidence 37999999999999999999999999999999999995 999999999999999999999999999999
Q ss_pred HHHhhhHhhhccccccccCCCHHHHHHHHHHHHhccCC
Q 030682 135 ELTKPISFVYIIDDIFDVCGALDALTLFTEAINRYDIS 172 (173)
Q Consensus 135 ~~aK~~~l~tviDD~fD~ygt~eEl~~ft~av~rWD~~ 172 (173)
+|||+++|+|++||+||+|||+|||++||+||+|||++
T Consensus 518 ~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~ 555 (784)
T PLN02279 518 SWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVN 555 (784)
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999986
No 2
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=4.7e-65 Score=467.76 Aligned_cols=170 Identities=45% Similarity=0.756 Sum_probs=166.3
Q ss_pred CcccccccCCCCCChHHHHHHHHHHhhcC---------CCChHHHHHHHccCccccCChH--hhhhhhhhccCCcchhhH
Q 030682 1 MSLYEASQLSIGGEDGLDEAGHFSATHLA---------NYDLAGVVEHLLLHPYRKSLSP--AKNFFHGNFQGSEYIWIL 69 (173)
Q Consensus 1 L~LYeAS~l~~~gE~iLdea~~fs~~~L~---------~~~L~~~V~~aL~~P~~~~~~r--ar~yI~~~Y~~~~~~~n~ 69 (173)
||||||||+++|||+|||||++||++||+ +++|+++|++||++|||+++|| ||+|| ++|+++++ +|+
T Consensus 142 l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi-~~Y~~~~~-~n~ 219 (542)
T cd00684 142 LSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYI-EFYEQEDD-HNE 219 (542)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHH-HHhCCCcc-ccH
Confidence 68999999999999999999999999999 3679999999999999999999 99999 99999999 999
Q ss_pred HHHHHHHhhhHHHhHhhHHHHHHHHHHHHhhchhhcchhhccchhhHHHHHhhcccCCCchHHHHHHHhhhHhhhccccc
Q 030682 70 DLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQPVKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDI 149 (173)
Q Consensus 70 ~lLelAklDFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~Ri~~aK~~~l~tviDD~ 149 (173)
+||||||+|||+||++||+||++++|||+++||.++|||+|+|+++||||++|++|||++|.+|+++||++++++++||+
T Consensus 220 ~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~ 299 (542)
T cd00684 220 TLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDT 299 (542)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhh
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhccCC
Q 030682 150 FDVCGALDALTLFTEAINRYDIS 172 (173)
Q Consensus 150 fD~ygt~eEl~~ft~av~rWD~~ 172 (173)
||+|||+|||+.||+||+|||++
T Consensus 300 fD~~gt~eEl~~ft~ai~rwd~~ 322 (542)
T cd00684 300 YDVYGTLEELELFTEAVERWDIS 322 (542)
T ss_pred hccCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999999975
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1.7e-64 Score=479.42 Aligned_cols=170 Identities=27% Similarity=0.396 Sum_probs=162.7
Q ss_pred CcccccccCCCCCChHHHHHHHHHHhhcC--------------CCChHHHHHHHccCccccCChH--hhhhhhhhccCCc
Q 030682 1 MSLYEASQLSIGGEDGLDEAGHFSATHLA--------------NYDLAGVVEHLLLHPYRKSLSP--AKNFFHGNFQGSE 64 (173)
Q Consensus 1 L~LYeAS~l~~~gE~iLdea~~fs~~~L~--------------~~~L~~~V~~aL~~P~~~~~~r--ar~yI~~~Y~~~~ 64 (173)
||||||||+++|||+|||+|+.||+++|+ +++|+++|+|||++|||+++|| ||+|| ++|++++
T Consensus 406 L~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI-~~Y~~~~ 484 (800)
T PLN02592 406 FNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYASLPRVETRFYI-EQYGGED 484 (800)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcCcchHHHHHHH-HHhcCCc
Confidence 68999999999999999999999999998 1368999999999999999999 99999 9999877
Q ss_pred ch------------hhHHHHHHHHhhhHHHhHhhHHHHHHHHHHHHhhchhhcchhhccchhhHHHHHhhcccCCCchHH
Q 030682 65 YI------------WILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQPVKWYVWSMACFTDPNLSWQ 132 (173)
Q Consensus 65 ~~------------~n~~lLelAklDFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~ 132 (173)
++ +|+.||||||+|||+||++||+||++++||||++||. +|||||||++|||||++|++||||||.+
T Consensus 485 ~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~-~L~faRdr~ve~Yfwa~~~~feP~~s~~ 563 (800)
T PLN02592 485 DVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLG-EFGVSRSELLLAYFLAAASIFEPERSHE 563 (800)
T ss_pred ccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCC-cCCcchhHHHHHHHHHHHhhcCccchHH
Confidence 62 4999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred HHHHHhhhHhhhccccccccCCCHHHHHHHHHHHH--------hccCC
Q 030682 133 RIELTKPISFVYIIDDIFDVCGALDALTLFTEAIN--------RYDIS 172 (173)
Q Consensus 133 Ri~~aK~~~l~tviDD~fD~ygt~eEl~~ft~av~--------rWD~~ 172 (173)
|++|||+++|+|+|||+||+|||+|||++||++|+ |||.+
T Consensus 564 Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~ 611 (800)
T PLN02592 564 RLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHH 611 (800)
T ss_pred HHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCch
Confidence 99999999999999999999999999999999997 99964
No 4
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.85 E-value=2e-21 Score=160.59 Aligned_cols=101 Identities=32% Similarity=0.484 Sum_probs=97.5
Q ss_pred HHHHHHhhhHHHhHhhHHHHHHHHHHHHhhchhhcchhhccchhhHHHHHhhcccCCCchHHHHHHHhhhHhhhcccccc
Q 030682 71 LQELANMDFKLVQSLHQKEIVQISSWWRELGLAKKLEFAREQPVKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIF 150 (173)
Q Consensus 71 lLelAklDFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~Ri~~aK~~~l~tviDD~f 150 (173)
+|+|||+|||.||.+||+|++++++||+++|+..+.+.+|+|++.++|+.+++++.|..+..|+++||..+++.++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999668899999999999999999999998889999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhccC
Q 030682 151 DVCGALDALTLFTEAINRYDI 171 (173)
Q Consensus 151 D~ygt~eEl~~ft~av~rWD~ 171 (173)
|..|+.++++.|+++++|||+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~ 101 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDP 101 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSS
T ss_pred ccccchHHHHHHHHHHhcccc
Confidence 999999999999999999975
No 5
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.63 E-value=6.7e-16 Score=128.47 Aligned_cols=88 Identities=48% Similarity=0.921 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHhhchhhcchhhccchhhHHHHHhhcccCCCchHHHHHHHhhhHhhhccccccccCCCHHHHHHHHH
Q 030682 85 LHQKEIVQISSWWRELGLAKKLEFAREQPVKWYVWSMACFTDPNLSWQRIELTKPISFVYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 85 ~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~Ri~~aK~~~l~tviDD~fD~ygt~eEl~~ft~ 164 (173)
.||+|++++++||+++||....+++|.+..++|+|+++++++|+.+..|+++||.++++.++||.||.+|+.+|+..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 48999999999999999975555999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCC
Q 030682 165 AINRYDIS 172 (173)
Q Consensus 165 av~rWD~~ 172 (173)
+++||++.
T Consensus 81 ~~~~~~~~ 88 (284)
T cd00868 81 AVERWDIS 88 (284)
T ss_pred HHHhcChh
Confidence 99999853
No 6
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=97.98 E-value=1.6e-05 Score=67.52 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=68.1
Q ss_pred HHHHHHHhhchhhcchhhccchhhHHHHHhhcccCCCchHHHHHHH-hhhHhhhccccccccC-CCHHHHHHHHHHHHhc
Q 030682 92 QISSWWRELGLAKKLEFAREQPVKWYVWSMACFTDPNLSWQRIELT-KPISFVYIIDDIFDVC-GALDALTLFTEAINRY 169 (173)
Q Consensus 92 ~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~Ri~~a-K~~~l~tviDD~fD~y-gt~eEl~~ft~av~rW 169 (173)
....|.++.|+. .-+.+|++.+.++|+.++.++.|+.+..|+.++ +.+.++.++||.||.. ++.++++.+++.+.++
T Consensus 18 ~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~ 96 (303)
T cd00687 18 EYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDI 96 (303)
T ss_pred HHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhc
Confidence 477898888663 345899999999999999999999999999555 9999999999999998 4999999999888776
Q ss_pred cC
Q 030682 170 DI 171 (173)
Q Consensus 170 D~ 171 (173)
..
T Consensus 97 ~~ 98 (303)
T cd00687 97 LR 98 (303)
T ss_pred cC
Confidence 43
No 7
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=60.68 E-value=3 Score=32.84 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=19.8
Q ss_pred HhhhccccccccCCCHHHHHHHHH
Q 030682 141 SFVYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 141 ~l~tviDD~fD~ygt~eEl~~ft~ 164 (173)
-=+.++||+.|.++|+.++..+..
T Consensus 85 k~VLIVDDIiDTG~Tl~~v~~~l~ 108 (156)
T PRK09177 85 EGFLVVDDLVDTGGTARAVREMYP 108 (156)
T ss_pred CEEEEEeeeeCCHHHHHHHHHHHh
Confidence 345688999999999999987654
No 8
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=58.06 E-value=3.7 Score=29.69 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=18.1
Q ss_pred hhccccccccCCCHHHHHHHHH
Q 030682 143 VYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 143 ~tviDD~fD~ygt~eEl~~ft~ 164 (173)
+.++||++|.++|+.++..+..
T Consensus 91 vliVDDvi~tG~Tl~~~~~~L~ 112 (125)
T PF00156_consen 91 VLIVDDVIDTGGTLKEAIELLK 112 (125)
T ss_dssp EEEEEEEESSSHHHHHHHHHHH
T ss_pred EEEEeeeEcccHHHHHHHHHHH
Confidence 5688999999999998866543
No 9
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=53.72 E-value=6.4 Score=32.45 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.5
Q ss_pred hhccccccccCCCHHHHHHHHHH
Q 030682 143 VYIIDDIFDVCGALDALTLFTEA 165 (173)
Q Consensus 143 ~tviDD~fD~ygt~eEl~~ft~a 165 (173)
+.++||+.|++.|++....+.+.
T Consensus 90 VLIVDDI~DTG~Tl~~a~~~l~~ 112 (192)
T COG2236 90 VLIVDDIVDTGETLELALEELKK 112 (192)
T ss_pred EEEEecccCchHhHHHHHHHHHh
Confidence 46889999999999988777654
No 10
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=46.87 E-value=5.5 Score=31.91 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=17.8
Q ss_pred hhccccccccCCCHHHHHHHH
Q 030682 143 VYIIDDIFDVCGALDALTLFT 163 (173)
Q Consensus 143 ~tviDD~fD~ygt~eEl~~ft 163 (173)
+.++||+|.++.|+.|+....
T Consensus 155 vllvDDV~TTGaTl~~~~~~L 175 (190)
T TIGR00201 155 IVLVDDVVTTGATLHEIARLL 175 (190)
T ss_pred EEEEeeeeccHHHHHHHHHHH
Confidence 667999999999999986543
No 11
>PRK11595 DNA utilization protein GntX; Provisional
Probab=46.04 E-value=8.2 Score=31.92 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=17.7
Q ss_pred hhccccccccCCCHHHHHHHH
Q 030682 143 VYIIDDIFDVCGALDALTLFT 163 (173)
Q Consensus 143 ~tviDD~fD~ygt~eEl~~ft 163 (173)
+.++||++|++.|+.++....
T Consensus 190 vllvDDv~tTG~Tl~~~~~~L 210 (227)
T PRK11595 190 MAIVDDVVTTGSTVAEIAQLL 210 (227)
T ss_pred EEEEeeeecchHHHHHHHHHH
Confidence 678999999999999986543
No 12
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=44.32 E-value=8.5 Score=30.54 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=17.6
Q ss_pred hhccccccccCCCHHHHHHHH
Q 030682 143 VYIIDDIFDVCGALDALTLFT 163 (173)
Q Consensus 143 ~tviDD~fD~ygt~eEl~~ft 163 (173)
+.++||+.|+++|+.++....
T Consensus 98 VLIVDDIidTG~Tl~~~~~~L 118 (176)
T PRK05205 98 VILVDDVLYTGRTIRAALDAL 118 (176)
T ss_pred EEEEecccCcHHHHHHHHHHH
Confidence 678899999999999876443
No 13
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=41.20 E-value=12 Score=31.32 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=18.6
Q ss_pred hhccccccccCCCHHHHHHHHH
Q 030682 143 VYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 143 ~tviDD~fD~ygt~eEl~~ft~ 164 (173)
+.+|||+|.++.|+.|+.....
T Consensus 187 vlLvDDV~TTGaTl~~~~~~L~ 208 (225)
T COG1040 187 VLLVDDVYTTGATLKEAAKLLR 208 (225)
T ss_pred EEEEecccccHHHHHHHHHHHH
Confidence 5688999999999999876543
No 14
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=40.47 E-value=10 Score=30.35 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=17.9
Q ss_pred hhccccccccCCCHHHHHHHHH
Q 030682 143 VYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 143 ~tviDD~fD~ygt~eEl~~ft~ 164 (173)
+.++||+.|++.|+.++.....
T Consensus 100 VLIVDDIidTG~Tl~~~~~~Lk 121 (181)
T PRK09162 100 VLVVDDILDEGHTLAAIRDRCL 121 (181)
T ss_pred EEEEccccCcHHHHHHHHHHHH
Confidence 4568999999999999876543
No 15
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=38.43 E-value=14 Score=29.14 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=19.3
Q ss_pred HhhhccccccccCCCHHHHHHHHH
Q 030682 141 SFVYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 141 ~l~tviDD~fD~ygt~eEl~~ft~ 164 (173)
-=+.++||+.++.+|+.++.....
T Consensus 115 ~~VLIVDDivtTG~Tl~~~~~~l~ 138 (175)
T PRK02304 115 DRVLIVDDLLATGGTLEAAIKLLE 138 (175)
T ss_pred CEEEEEeCCccccHHHHHHHHHHH
Confidence 346789999999999998866553
No 16
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=38.21 E-value=12 Score=29.35 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=18.8
Q ss_pred hhhccccccccCCCHHHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~ft~ 164 (173)
=+.++||++++++|+.++.....
T Consensus 111 ~VLIVDDIitTG~Tl~~a~~~L~ 133 (169)
T TIGR01090 111 RVLIVDDLLATGGTAEATDELIR 133 (169)
T ss_pred EEEEEeccccchHHHHHHHHHHH
Confidence 45678999999999999876554
No 17
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=37.63 E-value=13 Score=29.40 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=18.4
Q ss_pred hhhccccccccCCCHHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLFT 163 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~ft 163 (173)
=+.++||+.|+.+|+.++....
T Consensus 86 ~vlivDDii~TG~Tl~~~~~~l 107 (166)
T TIGR01203 86 DVLIVEDIVDTGLTLQYLLDLL 107 (166)
T ss_pred EEEEEeeeeCcHHHHHHHHHHH
Confidence 3678899999999999986654
No 18
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.00 E-value=26 Score=29.42 Aligned_cols=16 Identities=38% Similarity=0.987 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhch
Q 030682 87 QKEIVQISSWWRELGL 102 (173)
Q Consensus 87 q~El~~l~rWw~~~~l 102 (173)
++|+..|.+||++.|-
T Consensus 8 ~qql~~ik~wwkeNGk 23 (207)
T COG2976 8 QQQLEAIKDWWKENGK 23 (207)
T ss_pred HHHHHHHHHHHHHCCc
Confidence 7899999999999994
No 19
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=36.85 E-value=14 Score=29.47 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=18.4
Q ss_pred hhhccccccccCCCHHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLFT 163 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~ft 163 (173)
-+.++||++++++|+.++....
T Consensus 122 ~VLIVDDiitTG~Tl~aa~~~L 143 (178)
T PRK07322 122 RVAIVDDVVSTGGTLTALERLV 143 (178)
T ss_pred EEEEEeccccccHHHHHHHHHH
Confidence 4678999999999999886554
No 20
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=32.74 E-value=18 Score=29.24 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=19.1
Q ss_pred hhhccccccccCCCHHHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~ft~ 164 (173)
=+.++||+.|..+|+.++.....
T Consensus 107 ~VLIVDDIi~TG~Tl~~a~~~l~ 129 (187)
T TIGR01367 107 KFVAVEDVVTTGGSLLEAIRAIE 129 (187)
T ss_pred EEEEEEeeecchHHHHHHHHHHH
Confidence 46789999999999999876543
No 21
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=32.43 E-value=18 Score=29.07 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.7
Q ss_pred hhccccccccCCCHHHHHHHHH
Q 030682 143 VYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 143 ~tviDD~fD~ygt~eEl~~ft~ 164 (173)
+.++||+.|+..|+..+..+..
T Consensus 95 VLlVDDIiDTG~TL~~l~~~l~ 116 (178)
T PRK15423 95 VLIVEDIIDSGNTLSKVREILS 116 (178)
T ss_pred EEEEeeecCchHHHHHHHHHHH
Confidence 5688999999999998877654
No 22
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=29.24 E-value=22 Score=30.98 Aligned_cols=21 Identities=19% Similarity=0.117 Sum_probs=17.4
Q ss_pred hhhccccccccCCCHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLF 162 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~f 162 (173)
-+.++||+.|++||+.++...
T Consensus 213 ~vIIVDDIidTG~Tl~~aa~~ 233 (301)
T PRK07199 213 TPVLVDDIVSTGRTLIEAARQ 233 (301)
T ss_pred EEEEEecccCcHHHHHHHHHH
Confidence 457899999999999887644
No 23
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=29.03 E-value=27 Score=27.93 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=19.0
Q ss_pred hhhccccccccCCCHHHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~ft~ 164 (173)
=+.++||+.++.||+.++....+
T Consensus 109 ~VlIVDDvitTG~Tl~~~~~~l~ 131 (176)
T PRK13812 109 EVVVLEDIATTGQSAVDAVEALR 131 (176)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHH
Confidence 35688999999999999866554
No 24
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=28.81 E-value=23 Score=27.97 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=19.0
Q ss_pred hhhccccccccCCCHHHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~ft~ 164 (173)
=+.++||+.|+.||+.+.....+
T Consensus 110 ~VlIVDDvi~TG~Tl~~a~~~l~ 132 (173)
T TIGR00336 110 KVVVVEDVITTGTSILEAVEIIQ 132 (173)
T ss_pred EEEEEeccccChHHHHHHHHHHH
Confidence 46789999999999999876553
No 25
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=28.11 E-value=23 Score=31.48 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=17.5
Q ss_pred hhccccccccCCCHHHHHHHH
Q 030682 143 VYIIDDIFDVCGALDALTLFT 163 (173)
Q Consensus 143 ~tviDD~fD~ygt~eEl~~ft 163 (173)
+.++||+.|+.||+.++....
T Consensus 233 vlIVDDIidTG~Tl~~aa~~L 253 (326)
T PLN02297 233 VVIVDDLVQSGGTLIECQKVL 253 (326)
T ss_pred EEEEecccCcHHHHHHHHHHH
Confidence 567899999999999886544
No 26
>PF14165 YtzH: YtzH-like protein
Probab=27.27 E-value=69 Score=23.37 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=19.5
Q ss_pred hhhccccc-cccCCCHHHHHHHHHHHHh
Q 030682 142 FVYIIDDI-FDVCGALDALTLFTEAINR 168 (173)
Q Consensus 142 l~tviDD~-fD~ygt~eEl~~ft~av~r 168 (173)
|-=|+++- -|.+||..|++.+...|+.
T Consensus 10 LkDIL~~hq~DccgTvsEcEQieRLvks 37 (87)
T PF14165_consen 10 LKDILSNHQLDCCGTVSECEQIERLVKS 37 (87)
T ss_pred HHHHHHhhhhhccCcHHHHHHHHHHHHH
Confidence 33344443 6899999999998887763
No 27
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=27.26 E-value=28 Score=29.26 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=20.8
Q ss_pred hHhhhccccccccCCCHHHHHHHHHH
Q 030682 140 ISFVYIIDDIFDVCGALDALTLFTEA 165 (173)
Q Consensus 140 ~~l~tviDD~fD~ygt~eEl~~ft~a 165 (173)
..=+.++||+.+.+||+..+..+.+.
T Consensus 176 G~rVLIVDDvi~TG~Tl~~~~~ll~~ 201 (238)
T PRK08558 176 GDRVLIVDDIIRSGETQRALLDLARQ 201 (238)
T ss_pred cCEEEEEecccccCHHHHHHHHHHHH
Confidence 34467899999999999998776653
No 28
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=26.89 E-value=23 Score=28.62 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=18.5
Q ss_pred hhhccccccccCCCHHHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~ft~ 164 (173)
=+.++||+.|+.+|+..+.....
T Consensus 99 ~VliVDDIidTG~Tl~~~~~~l~ 121 (189)
T PLN02238 99 HVLLVEDIVDTGNTLSALVAHLE 121 (189)
T ss_pred EEEEEecccchHHHHHHHHHHHH
Confidence 35688999999999998865543
No 29
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=25.39 E-value=33 Score=27.69 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=18.9
Q ss_pred hhhccccccccCCCHHHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~ft~ 164 (173)
=+.++||+-|..+|+.++....+
T Consensus 115 ~VliVDDvi~tG~Tl~~~~~~l~ 137 (202)
T PRK00455 115 RVLVVEDVITTGGSVLEAVEAIR 137 (202)
T ss_pred EEEEEecccCCcHHHHHHHHHHH
Confidence 46788999999999999865544
No 30
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=23.58 E-value=28 Score=29.59 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=17.9
Q ss_pred hhccccccccCCCHHHHHHHH
Q 030682 143 VYIIDDIFDVCGALDALTLFT 163 (173)
Q Consensus 143 ~tviDD~fD~ygt~eEl~~ft 163 (173)
+.++||+.|+.+|+.++....
T Consensus 153 VLIVDDIidTG~Tl~~~~~~L 173 (241)
T PTZ00149 153 VLIVEDIIDTGNTLVKFCEYL 173 (241)
T ss_pred EEEEEeEeChHHHHHHHHHHH
Confidence 578999999999999987554
No 31
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.21 E-value=30 Score=30.53 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.5
Q ss_pred hhhccccccccCCCHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLF 162 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~f 162 (173)
-+.++||+.|..||+-+....
T Consensus 220 ~viIVDDIidTG~Tl~~aa~~ 240 (323)
T PRK02458 220 KAILIDDILNTGKTFAEAAKI 240 (323)
T ss_pred EEEEEcceeCcHHHHHHHHHH
Confidence 467889999999999887654
No 32
>KOG2254 consensus Predicted endo-1,3-beta-glucanase [Carbohydrate transport and metabolism]
Probab=23.15 E-value=79 Score=30.98 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=33.8
Q ss_pred HHHHHHhhhHhhhccccc-cccCCCHHHHHHHHHHHHhcc
Q 030682 132 QRIELTKPISFVYIIDDI-FDVCGALDALTLFTEAINRYD 170 (173)
Q Consensus 132 ~Ri~~aK~~~l~tviDD~-fD~ygt~eEl~~ft~av~rWD 170 (173)
.-.++||.+-+..++-+| +|---|-+=++.+..|++||=
T Consensus 418 sGKviAkyA~i~l~a~eIl~de~~t~~~ltkLk~a~erfl 457 (747)
T KOG2254|consen 418 SGKVIAKYARILLTASEILGDETSTKKILTKLKNAFERFL 457 (747)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 346788998888888888 888889899999999999993
No 33
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.68 E-value=36 Score=29.92 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=17.8
Q ss_pred hhhccccccccCCCHHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLFT 163 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~ft 163 (173)
=+.++||+.|+.||+.++....
T Consensus 219 ~viIVDDIidTG~Tl~~aa~~L 240 (320)
T PRK02269 219 KCILIDDMIDTAGTICHAADAL 240 (320)
T ss_pred EEEEEeeecCcHHHHHHHHHHH
Confidence 4668899999999998875543
No 34
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=22.04 E-value=38 Score=27.51 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=19.1
Q ss_pred HhhhccccccccCCCHHHHHHHHH
Q 030682 141 SFVYIIDDIFDVCGALDALTLFTE 164 (173)
Q Consensus 141 ~l~tviDD~fD~ygt~eEl~~ft~ 164 (173)
-=+.++||+-+.+||+.++....+
T Consensus 141 k~VlIVDDVitTG~Tl~~ai~~l~ 164 (200)
T PRK02277 141 KRCVIVDDVITSGTTMKETIEYLK 164 (200)
T ss_pred CEEEEEeeccCchHHHHHHHHHHH
Confidence 346688999999999999865543
No 35
>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.
Probab=20.88 E-value=2.9e+02 Score=22.68 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhchhhcchhhccchhhHHHHHhhccc---------CCCchHHHHHHHhhhHhhhccccccccCCCHH
Q 030682 87 QKEIVQISSWWRELGLAKKLEFAREQPVKWYVWSMACFT---------DPNLSWQRIELTKPISFVYIIDDIFDVCGALD 157 (173)
Q Consensus 87 q~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~---------eP~~s~~Ri~~aK~~~l~tviDD~fD~ygt~e 157 (173)
..+...+..-+++.++ +-|.|++|+.+ |+-- .+.=+.+|.+.-=+..+||++|-+-=.+.+.|
T Consensus 48 ~~~~~~le~F~~~y~l--~cp~A~~Rl~~------G~P~Tie~~~~~~~~~~~~ak~Vae~t~~FIT~mDaLKLn~~a~D 119 (188)
T PF03997_consen 48 DDEFPDLEEFMKKYNL--DCPAALERLRE------GVPATIEHRISSSSDKGNSAKLVAEATQNFITLMDALKLNYRAKD 119 (188)
T ss_dssp HHHHHHHHHHHHHTTS---HHHHHHHHHC------TSS--------------CHHHHHHHHHHHHHHHHHHHHTT--BHH
T ss_pred cccCCCHHHHHHHhcc--cCChHHHHHHc------CCCCchhhhcccccCCchHHHHHHHHhChhhhhhHHHhccchhHh
Confidence 3388889999999999 58999999973 2211 13456688888889999999999988889999
Q ss_pred HHHHH
Q 030682 158 ALTLF 162 (173)
Q Consensus 158 El~~f 162 (173)
+|..+
T Consensus 120 qLhPl 124 (188)
T PF03997_consen 120 QLHPL 124 (188)
T ss_dssp HHHHH
T ss_pred hHhhH
Confidence 98654
No 36
>PF12626 PolyA_pol_arg_C: Polymerase A arginine-rich C-terminus; PDB: 3AQN_A 3AQK_A 3AQM_B 3AQL_B.
Probab=20.87 E-value=1.4e+02 Score=22.78 Aligned_cols=28 Identities=29% Similarity=0.687 Sum_probs=23.3
Q ss_pred HHhhhHHHhHhhHHHHHHHHHHHHhhch
Q 030682 75 ANMDFKLVQSLHQKEIVQISSWWRELGL 102 (173)
Q Consensus 75 AklDFn~~Q~~hq~El~~l~rWw~~~~l 102 (173)
|-.||=.|-..--+++.++..||.+.--
T Consensus 65 AAyDFL~LR~~~ge~~~~l~~WW~~fq~ 92 (124)
T PF12626_consen 65 AAYDFLLLRAEAGEELSELAEWWTEFQE 92 (124)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 6678888888889999999999998754
No 37
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.20 E-value=46 Score=29.30 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.1
Q ss_pred hhhccccccccCCCHHHHHHH
Q 030682 142 FVYIIDDIFDVCGALDALTLF 162 (173)
Q Consensus 142 l~tviDD~fD~ygt~eEl~~f 162 (173)
-+.++||+.|.+||+-+....
T Consensus 219 ~viIVDDIidTG~Tl~~aa~~ 239 (319)
T PRK04923 219 TCVLVDDLVDTAGTLCAAAAA 239 (319)
T ss_pred EEEEEecccCchHHHHHHHHH
Confidence 356889999999999887543
No 38
>PF03713 DUF305: Domain of unknown function (DUF305); InterPro: IPR005183 A domain that is found in small family of bacterial secreted proteins with no known function. It ia also found in Paramecium bursaria Chlorella virus 1 (PBCV-1). This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important.; PDB: 2QF9_B 3BT5_A.
Probab=20.07 E-value=1.9e+02 Score=21.97 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=27.6
Q ss_pred hhHHHHHHHHhhhHHHhHhhHHHHHHHHHHHHhhchhhc
Q 030682 67 WILDLQELANMDFKLVQSLHQKEIVQISSWWRELGLAKK 105 (173)
Q Consensus 67 ~n~~lLelAklDFn~~Q~~hq~El~~l~rWw~~~~l~~~ 105 (173)
.|+.+-.||. -+-.-++.|+..+.+|.+.+|.+..
T Consensus 27 ~~p~vr~lA~----~I~~~Q~~ei~~m~~wl~~~~~~~~ 61 (151)
T PF03713_consen 27 TDPEVRALAQ----QIIAAQQAEIAQMQAWLQSWGGPPP 61 (151)
T ss_dssp --HHHHHHHH----HHHHHHHHHHHHHHHHHHHCT--SS
T ss_pred CCHHHHHHHH----HHHHHHHHHHHHHHHHhhhchhhhc
Confidence 5888999998 7888899999999999999998633
Done!