Query 030686
Match_columns 173
No_of_seqs 148 out of 1380
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 03:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 7.3E-42 1.6E-46 225.1 17.0 161 12-172 8-172 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 9.3E-40 2E-44 214.4 17.2 162 11-172 3-167 (200)
3 PLN03071 GTP-binding nuclear p 100.0 3.2E-39 6.9E-44 225.5 21.1 172 1-172 1-172 (219)
4 KOG0080 GTPase Rab18, small G 100.0 2E-39 4.2E-44 206.8 15.9 165 9-173 7-175 (209)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.4E-39 1.2E-43 211.1 16.7 165 8-172 17-185 (221)
6 KOG0078 GTP-binding protein SE 100.0 1.1E-38 2.4E-43 212.9 18.0 164 9-172 8-174 (207)
7 cd04121 Rab40 Rab40 subfamily. 100.0 2.5E-38 5.4E-43 216.0 19.9 161 12-172 5-167 (189)
8 KOG0098 GTPase Rab2, small G p 100.0 8.5E-39 1.8E-43 208.6 14.6 162 11-172 4-168 (216)
9 cd04133 Rop_like Rop subfamily 100.0 1.6E-37 3.5E-42 209.9 19.8 158 14-172 2-173 (176)
10 cd04120 Rab12 Rab12 subfamily. 100.0 1.6E-37 3.6E-42 213.8 19.4 159 14-172 1-163 (202)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.8E-37 4E-42 210.7 19.3 161 11-172 3-180 (182)
12 cd01875 RhoG RhoG subfamily. 100.0 3.3E-37 7.2E-42 211.5 19.9 160 12-172 2-177 (191)
13 cd00877 Ran Ran (Ras-related n 100.0 7.3E-37 1.6E-41 205.5 20.8 160 14-173 1-160 (166)
14 cd04131 Rnd Rnd subfamily. Th 100.0 7.5E-37 1.6E-41 207.3 19.3 159 13-172 1-176 (178)
15 KOG0394 Ras-related GTPase [Ge 100.0 3.5E-37 7.6E-42 200.7 15.7 162 11-172 7-178 (210)
16 KOG0093 GTPase Rab3, small G p 100.0 3E-37 6.5E-42 194.1 14.6 159 13-171 21-182 (193)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.3E-36 5.1E-41 211.4 20.0 161 11-172 11-188 (232)
18 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.9E-36 8.5E-41 207.8 20.1 159 14-172 1-168 (201)
19 smart00176 RAN Ran (Ras-relate 100.0 2.6E-36 5.7E-41 207.5 18.9 154 19-172 1-154 (200)
20 cd04122 Rab14 Rab14 subfamily. 100.0 3.9E-36 8.5E-41 202.0 19.1 161 13-173 2-165 (166)
21 KOG0079 GTP-binding protein H- 100.0 3.3E-37 7.1E-42 194.2 12.3 160 13-172 8-169 (198)
22 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.7E-36 1.7E-40 203.1 19.2 158 14-172 1-166 (182)
23 cd04124 RabL2 RabL2 subfamily. 100.0 1.5E-35 3.3E-40 198.2 19.8 158 14-172 1-158 (161)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 7.8E-36 1.7E-40 201.5 18.6 159 13-172 2-164 (172)
25 cd01874 Cdc42 Cdc42 subfamily. 100.0 2E-35 4.3E-40 200.0 19.4 157 14-171 2-174 (175)
26 cd01865 Rab3 Rab3 subfamily. 100.0 2.3E-35 5E-40 198.0 19.5 159 14-172 2-163 (165)
27 KOG0087 GTPase Rab11/YPT3, sma 100.0 6.5E-36 1.4E-40 199.0 16.3 161 12-172 13-176 (222)
28 cd04110 Rab35 Rab35 subfamily. 100.0 3.6E-35 7.7E-40 202.6 20.3 161 12-172 5-167 (199)
29 cd04119 RJL RJL (RabJ-Like) su 100.0 2.4E-35 5.1E-40 198.2 18.9 160 14-173 1-168 (168)
30 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.4E-35 7.3E-40 197.4 19.5 160 13-172 2-164 (166)
31 cd04127 Rab27A Rab27a subfamil 100.0 2.7E-35 5.9E-40 200.3 18.8 162 12-173 3-178 (180)
32 cd01867 Rab8_Rab10_Rab13_like 100.0 3.6E-35 7.8E-40 197.5 19.1 160 13-172 3-165 (167)
33 cd01871 Rac1_like Rac1-like su 100.0 4E-35 8.6E-40 198.4 19.0 156 14-170 2-173 (174)
34 cd04117 Rab15 Rab15 subfamily. 100.0 4.7E-35 1E-39 195.8 19.1 157 14-170 1-160 (161)
35 PF00071 Ras: Ras family; Int 100.0 6.2E-35 1.3E-39 195.3 18.9 158 15-172 1-161 (162)
36 cd04106 Rab23_lke Rab23-like s 100.0 5.8E-35 1.3E-39 195.4 18.8 158 14-171 1-162 (162)
37 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.5E-35 9.7E-40 203.9 18.5 159 13-172 1-176 (222)
38 cd04136 Rap_like Rap-like subf 100.0 6.9E-35 1.5E-39 195.2 18.6 158 13-171 1-162 (163)
39 KOG0086 GTPase Rab4, small G p 100.0 7.4E-36 1.6E-40 189.2 12.8 160 13-172 9-171 (214)
40 cd04175 Rap1 Rap1 subgroup. T 100.0 1.1E-34 2.4E-39 194.5 19.0 159 13-172 1-163 (164)
41 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.1E-34 2.4E-39 195.5 19.0 158 15-172 2-165 (170)
42 PTZ00369 Ras-like protein; Pro 100.0 1.3E-34 2.9E-39 198.4 19.3 161 11-172 3-167 (189)
43 cd04134 Rho3 Rho3 subfamily. 100.0 1.7E-34 3.6E-39 197.8 19.4 158 14-172 1-174 (189)
44 cd04116 Rab9 Rab9 subfamily. 100.0 3E-34 6.5E-39 193.5 19.8 161 11-171 3-170 (170)
45 cd04109 Rab28 Rab28 subfamily. 100.0 2E-34 4.4E-39 201.0 19.4 159 14-172 1-166 (215)
46 cd04113 Rab4 Rab4 subfamily. 100.0 2.4E-34 5.2E-39 192.3 18.7 158 14-171 1-161 (161)
47 cd01868 Rab11_like Rab11-like. 100.0 3.4E-34 7.3E-39 192.3 18.9 159 13-171 3-164 (165)
48 cd04125 RabA_like RabA-like su 100.0 3.8E-34 8.2E-39 196.0 19.3 159 14-172 1-162 (188)
49 cd01866 Rab2 Rab2 subfamily. 100.0 5.2E-34 1.1E-38 192.0 19.4 160 13-172 4-166 (168)
50 cd01864 Rab19 Rab19 subfamily. 100.0 4.2E-34 9.2E-39 191.9 18.9 160 12-171 2-165 (165)
51 cd04176 Rap2 Rap2 subgroup. T 100.0 4.3E-34 9.3E-39 191.5 18.8 158 13-171 1-162 (163)
52 cd04138 H_N_K_Ras_like H-Ras/N 100.0 5.2E-34 1.1E-38 190.6 19.1 158 13-171 1-161 (162)
53 cd04132 Rho4_like Rho4-like su 100.0 4.5E-34 9.8E-39 195.4 18.6 158 14-172 1-167 (187)
54 cd04111 Rab39 Rab39 subfamily. 100.0 6.4E-34 1.4E-38 197.8 19.0 160 13-172 2-166 (211)
55 cd04112 Rab26 Rab26 subfamily. 100.0 6.5E-34 1.4E-38 195.2 18.7 159 14-172 1-163 (191)
56 cd04118 Rab24 Rab24 subfamily. 100.0 1.2E-33 2.7E-38 194.2 20.0 159 14-172 1-166 (193)
57 PLN03110 Rab GTPase; Provision 100.0 9.3E-34 2E-38 197.7 19.5 161 12-172 11-174 (216)
58 cd04144 Ras2 Ras2 subfamily. 100.0 4.8E-34 1E-38 195.7 17.3 157 15-172 1-163 (190)
59 smart00174 RHO Rho (Ras homolo 100.0 1.4E-33 3.1E-38 190.8 19.0 157 16-173 1-173 (174)
60 cd04140 ARHI_like ARHI subfami 100.0 1.4E-33 2.9E-38 189.5 18.8 155 14-169 2-162 (165)
61 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.1E-33 4.5E-38 189.4 19.4 159 13-171 2-168 (170)
62 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.4E-33 5.3E-38 187.8 19.2 158 13-171 2-163 (164)
63 smart00175 RAB Rab subfamily o 100.0 2.1E-33 4.6E-38 188.1 18.9 159 14-172 1-162 (164)
64 KOG0095 GTPase Rab30, small G 100.0 1.5E-34 3.3E-39 182.6 12.4 159 13-171 7-168 (213)
65 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.5E-33 5.4E-38 187.9 19.0 158 14-171 1-163 (164)
66 smart00173 RAS Ras subfamily o 100.0 2.1E-33 4.5E-38 188.3 18.4 158 14-172 1-162 (164)
67 cd04126 Rab20 Rab20 subfamily. 100.0 1.7E-33 3.7E-38 195.9 18.6 154 14-172 1-190 (220)
68 cd01873 RhoBTB RhoBTB subfamil 100.0 2.6E-33 5.7E-38 192.2 18.8 156 13-170 2-194 (195)
69 cd01860 Rab5_related Rab5-rela 100.0 3.7E-33 7.9E-38 186.9 19.0 159 13-171 1-162 (163)
70 cd01863 Rab18 Rab18 subfamily. 100.0 6E-33 1.3E-37 185.5 19.4 158 14-171 1-161 (161)
71 PLN03108 Rab family protein; P 100.0 3.7E-33 7.9E-38 194.0 18.9 160 13-172 6-168 (210)
72 cd01861 Rab6 Rab6 subfamily. 100.0 4.9E-33 1.1E-37 185.9 18.4 158 14-171 1-161 (161)
73 cd01862 Rab7 Rab7 subfamily. 100.0 6.8E-33 1.5E-37 187.0 19.1 159 14-172 1-167 (172)
74 PTZ00132 GTP-binding nuclear p 100.0 1.5E-32 3.4E-37 191.7 21.1 164 9-172 5-168 (215)
75 cd04130 Wrch_1 Wrch-1 subfamil 100.0 7.8E-33 1.7E-37 187.1 19.0 155 14-169 1-171 (173)
76 PLN00223 ADP-ribosylation fact 100.0 2.7E-33 5.8E-38 190.5 16.5 157 11-172 15-178 (181)
77 KOG0088 GTPase Rab21, small G 100.0 2.7E-34 5.7E-39 183.1 10.3 172 1-172 1-175 (218)
78 cd04142 RRP22 RRP22 subfamily. 100.0 1.4E-32 3E-37 189.2 19.5 159 14-172 1-174 (198)
79 cd04135 Tc10 TC10 subfamily. 100.0 1.8E-32 3.8E-37 185.5 19.6 158 14-172 1-174 (174)
80 PLN03118 Rab family protein; P 100.0 2.9E-32 6.2E-37 189.8 21.1 160 12-172 13-177 (211)
81 KOG0091 GTPase Rab39, small G 100.0 9.9E-34 2.1E-38 181.3 11.5 161 12-172 7-173 (213)
82 cd04149 Arf6 Arf6 subfamily. 100.0 3E-33 6.5E-38 188.2 14.5 154 11-169 7-167 (168)
83 cd04123 Rab21 Rab21 subfamily. 100.0 3.1E-32 6.6E-37 182.0 19.1 159 14-172 1-162 (162)
84 cd04177 RSR1 RSR1 subgroup. R 100.0 3.1E-32 6.8E-37 183.4 19.2 159 13-172 1-164 (168)
85 smart00177 ARF ARF-like small 100.0 9.1E-33 2E-37 187.1 16.5 157 11-172 11-174 (175)
86 cd01892 Miro2 Miro2 subfamily. 100.0 2.7E-32 5.8E-37 183.8 18.3 160 12-172 3-166 (169)
87 cd04103 Centaurin_gamma Centau 100.0 2.9E-32 6.2E-37 181.6 18.1 151 14-171 1-158 (158)
88 cd04158 ARD1 ARD1 subfamily. 100.0 2.7E-32 5.8E-37 183.8 16.5 153 15-172 1-161 (169)
89 cd00154 Rab Rab family. Rab G 100.0 5.4E-32 1.2E-36 179.9 17.7 156 14-169 1-159 (159)
90 cd04146 RERG_RasL11_like RERG/ 100.0 4.1E-32 8.9E-37 182.2 17.2 157 15-172 1-164 (165)
91 cd04143 Rhes_like Rhes_like su 100.0 4.3E-32 9.4E-37 192.2 18.1 157 14-171 1-170 (247)
92 cd01870 RhoA_like RhoA-like su 100.0 1.1E-31 2.3E-36 181.8 18.9 157 14-171 2-174 (175)
93 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.8E-32 6E-37 182.0 15.5 151 14-169 1-158 (159)
94 PTZ00133 ADP-ribosylation fact 100.0 3.6E-32 7.7E-37 185.2 16.3 157 11-172 15-178 (182)
95 cd04148 RGK RGK subfamily. Th 100.0 1.5E-31 3.3E-36 187.1 18.8 157 14-172 1-163 (221)
96 cd04114 Rab30 Rab30 subfamily. 100.0 4.7E-31 1E-35 177.6 19.8 161 12-172 6-169 (169)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.1E-31 2.4E-36 182.9 16.5 160 12-172 2-170 (183)
98 KOG0081 GTPase Rab27, small G 100.0 1.2E-33 2.5E-38 180.3 5.7 160 14-173 10-182 (219)
99 cd04154 Arl2 Arl2 subfamily. 100.0 1E-31 2.2E-36 181.6 15.4 156 9-169 10-172 (173)
100 cd04139 RalA_RalB RalA/RalB su 100.0 4.8E-31 1.1E-35 176.6 18.4 158 14-172 1-162 (164)
101 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4.7E-32 1E-36 181.8 13.5 150 16-169 2-163 (164)
102 cd04129 Rho2 Rho2 subfamily. 100.0 7.9E-31 1.7E-35 179.4 19.5 159 13-172 1-173 (187)
103 cd00157 Rho Rho (Ras homology) 100.0 7.3E-31 1.6E-35 176.9 18.9 155 14-169 1-170 (171)
104 cd01893 Miro1 Miro1 subfamily. 100.0 6.6E-31 1.4E-35 176.6 18.0 158 14-173 1-165 (166)
105 cd04157 Arl6 Arl6 subfamily. 100.0 1.8E-31 4E-36 178.4 14.1 151 15-169 1-161 (162)
106 PF00025 Arf: ADP-ribosylation 100.0 9.4E-31 2E-35 177.0 17.0 156 11-171 12-175 (175)
107 KOG0097 GTPase Rab14, small G 100.0 5.4E-31 1.2E-35 165.3 13.4 162 10-171 8-172 (215)
108 cd00876 Ras Ras family. The R 100.0 1.9E-30 4.1E-35 173.0 17.0 156 15-171 1-160 (160)
109 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.3E-30 2.8E-35 176.4 15.6 153 12-169 14-173 (174)
110 KOG0395 Ras-related GTPase [Ge 100.0 2.1E-30 4.5E-35 177.1 15.9 159 12-171 2-164 (196)
111 cd04147 Ras_dva Ras-dva subfam 100.0 5.2E-30 1.1E-34 176.8 17.9 156 15-171 1-162 (198)
112 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.4E-30 7.4E-35 177.2 16.7 146 14-159 1-177 (202)
113 cd04137 RheB Rheb (Ras Homolog 100.0 7.6E-30 1.6E-34 173.5 17.5 158 14-172 2-163 (180)
114 cd00879 Sar1 Sar1 subfamily. 100.0 2.7E-30 5.8E-35 177.2 15.1 156 11-171 17-190 (190)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.9E-30 6.4E-35 173.6 14.5 150 15-169 1-166 (167)
116 cd04160 Arfrp1 Arfrp1 subfamil 100.0 3.5E-30 7.6E-35 173.1 14.4 151 15-169 1-166 (167)
117 KOG0083 GTPase Rab26/Rab37, sm 100.0 5.9E-32 1.3E-36 167.9 5.2 155 18-172 2-160 (192)
118 KOG0393 Ras-related small GTPa 100.0 1.7E-30 3.6E-35 174.3 12.3 161 11-172 2-179 (198)
119 cd04151 Arl1 Arl1 subfamily. 100.0 7.6E-30 1.6E-34 170.1 14.9 150 15-169 1-157 (158)
120 KOG0073 GTP-binding ADP-ribosy 100.0 1.3E-29 2.8E-34 162.4 14.6 157 11-172 14-178 (185)
121 cd04156 ARLTS1 ARLTS1 subfamil 100.0 5.3E-30 1.2E-34 171.1 13.5 151 15-169 1-159 (160)
122 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.3E-29 2.9E-34 168.8 15.1 150 15-169 1-157 (158)
123 smart00178 SAR Sar1p-like memb 100.0 1.8E-29 4E-34 172.2 15.4 155 11-170 15-183 (184)
124 cd01890 LepA LepA subfamily. 100.0 2E-28 4.4E-33 166.3 15.5 154 15-171 2-176 (179)
125 KOG0070 GTP-binding ADP-ribosy 100.0 1.1E-28 2.4E-33 161.8 13.0 159 9-172 13-178 (181)
126 PLN00023 GTP-binding protein; 100.0 4.2E-28 9.1E-33 174.7 16.9 138 10-147 18-189 (334)
127 cd04159 Arl10_like Arl10-like 100.0 7.5E-28 1.6E-32 159.9 15.1 150 16-169 2-158 (159)
128 cd04155 Arl3 Arl3 subfamily. 100.0 4.2E-28 9.2E-33 163.9 14.0 155 10-169 11-172 (173)
129 cd01897 NOG NOG1 is a nucleola 100.0 1.4E-27 3.1E-32 160.5 16.2 156 15-172 2-168 (168)
130 KOG4252 GTP-binding protein [S 100.0 5.1E-30 1.1E-34 166.8 3.2 161 12-172 19-181 (246)
131 PTZ00099 rab6; Provisional 100.0 5.3E-27 1.2E-31 158.6 16.5 137 36-172 3-142 (176)
132 cd01898 Obg Obg subfamily. Th 100.0 7.3E-27 1.6E-31 157.3 14.6 154 15-170 2-169 (170)
133 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 3.1E-27 6.7E-32 155.0 11.5 169 1-172 1-169 (216)
134 KOG0075 GTP-binding ADP-ribosy 99.9 1.4E-27 3E-32 150.5 9.1 156 12-171 19-181 (186)
135 TIGR00231 small_GTP small GTP- 99.9 4.7E-26 1E-30 151.0 16.9 156 13-168 1-160 (161)
136 cd04171 SelB SelB subfamily. 99.9 4.4E-26 9.6E-31 152.5 15.1 149 15-169 2-163 (164)
137 cd01878 HflX HflX subfamily. 99.9 6.7E-26 1.5E-30 157.0 14.7 157 11-171 39-204 (204)
138 TIGR02528 EutP ethanolamine ut 99.9 2.8E-26 6E-31 150.3 11.5 133 15-168 2-141 (142)
139 KOG0071 GTP-binding ADP-ribosy 99.9 9.3E-26 2E-30 141.3 12.5 156 11-171 15-177 (180)
140 COG1100 GTPase SAR1 and relate 99.9 3.8E-25 8.2E-30 154.8 17.1 161 12-172 4-185 (219)
141 cd01891 TypA_BipA TypA (tyrosi 99.9 7.7E-26 1.7E-30 155.6 13.0 146 14-162 3-172 (194)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.3E-25 7.2E-30 148.9 15.4 154 15-171 2-165 (168)
143 PRK12299 obgE GTPase CgtA; Rev 99.9 3.8E-25 8.1E-30 162.5 15.3 157 14-172 159-328 (335)
144 PRK04213 GTP-binding protein; 99.9 1.2E-25 2.6E-30 155.4 11.8 151 11-171 7-191 (201)
145 cd01879 FeoB Ferrous iron tran 99.9 7.4E-25 1.6E-29 145.7 15.0 147 18-171 1-156 (158)
146 TIGR00436 era GTP-binding prot 99.9 6.6E-25 1.4E-29 157.9 15.6 152 15-171 2-163 (270)
147 PF02421 FeoB_N: Ferrous iron 99.9 2.3E-25 4.9E-30 146.1 11.8 147 14-167 1-156 (156)
148 cd00882 Ras_like_GTPase Ras-li 99.9 1.1E-24 2.3E-29 143.2 15.2 150 18-168 1-156 (157)
149 PRK15494 era GTPase Era; Provi 99.9 1.3E-24 2.7E-29 160.5 16.1 155 11-171 50-215 (339)
150 TIGR01393 lepA GTP-binding pro 99.9 1.8E-24 3.9E-29 169.4 15.4 156 13-171 3-179 (595)
151 PRK03003 GTP-binding protein D 99.9 1.4E-24 3.1E-29 166.9 14.6 153 13-172 38-199 (472)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3.5E-24 7.5E-29 142.2 14.5 147 14-171 2-156 (157)
153 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.7E-24 5.9E-29 163.2 15.7 151 12-172 202-360 (442)
154 PF08477 Miro: Miro-like prote 99.9 1.4E-24 3.1E-29 138.1 12.1 114 15-128 1-119 (119)
155 cd01894 EngA1 EngA1 subfamily. 99.9 3.2E-24 6.8E-29 142.5 12.9 148 17-171 1-157 (157)
156 cd01889 SelB_euk SelB subfamil 99.9 4.4E-24 9.5E-29 146.6 13.9 156 14-172 1-186 (192)
157 TIGR02729 Obg_CgtA Obg family 99.9 1.2E-23 2.6E-28 154.4 16.4 156 14-171 158-328 (329)
158 TIGR03156 GTP_HflX GTP-binding 99.9 7.5E-24 1.6E-28 156.8 15.4 150 13-170 189-350 (351)
159 cd01881 Obg_like The Obg-like 99.9 3.4E-24 7.3E-29 145.0 12.1 151 18-170 1-175 (176)
160 PRK05291 trmE tRNA modificatio 99.9 4.1E-24 9E-29 163.0 13.9 148 12-171 214-369 (449)
161 KOG0076 GTP-binding ADP-ribosy 99.9 6E-25 1.3E-29 142.3 7.8 157 12-172 16-187 (197)
162 cd00881 GTP_translation_factor 99.9 1.4E-23 3.1E-28 143.4 14.4 155 15-172 1-187 (189)
163 TIGR03594 GTPase_EngA ribosome 99.9 3.2E-23 7E-28 158.2 17.2 157 11-171 170-343 (429)
164 PRK12297 obgE GTPase CgtA; Rev 99.9 4.1E-23 8.8E-28 155.3 16.7 153 15-171 160-326 (424)
165 PRK03003 GTP-binding protein D 99.9 1.5E-23 3.2E-28 161.3 14.4 156 12-171 210-381 (472)
166 cd04163 Era Era subfamily. Er 99.9 1.4E-22 3E-27 135.5 16.0 155 12-170 2-167 (168)
167 TIGR00487 IF-2 translation ini 99.9 1.3E-22 2.7E-27 158.4 17.7 155 10-169 84-247 (587)
168 cd01895 EngA2 EngA2 subfamily. 99.9 1.3E-22 2.8E-27 136.6 15.2 154 13-170 2-173 (174)
169 PRK00454 engB GTP-binding prot 99.9 1.1E-22 2.4E-27 140.0 14.9 156 11-172 22-194 (196)
170 KOG1673 Ras GTPases [General f 99.9 5.7E-23 1.2E-27 131.0 12.1 162 10-172 17-186 (205)
171 PRK15467 ethanolamine utilizat 99.9 5.9E-23 1.3E-27 136.7 12.9 138 15-171 3-146 (158)
172 KOG0074 GTP-binding ADP-ribosy 99.9 2.1E-23 4.5E-28 131.0 9.9 157 10-170 14-177 (185)
173 TIGR03598 GTPase_YsxC ribosome 99.9 6.9E-23 1.5E-27 139.2 13.0 149 7-161 12-179 (179)
174 PF00009 GTP_EFTU: Elongation 99.9 2.5E-23 5.4E-28 142.4 10.5 157 12-171 2-186 (188)
175 PRK12296 obgE GTPase CgtA; Rev 99.9 1.7E-22 3.6E-27 153.9 15.8 156 14-171 160-339 (500)
176 KOG0072 GTP-binding ADP-ribosy 99.9 1.3E-23 2.8E-28 132.2 7.7 155 12-171 17-178 (182)
177 PRK09554 feoB ferrous iron tra 99.9 2.9E-22 6.4E-27 160.5 17.4 152 12-170 2-166 (772)
178 cd01888 eIF2_gamma eIF2-gamma 99.9 1.6E-22 3.4E-27 139.9 13.9 110 62-172 83-199 (203)
179 PRK05433 GTP-binding protein L 99.9 1.2E-22 2.6E-27 159.4 14.3 156 13-171 7-183 (600)
180 PRK11058 GTPase HflX; Provisio 99.9 3.5E-22 7.5E-27 151.1 16.2 154 14-171 198-361 (426)
181 PRK00089 era GTPase Era; Revie 99.9 4E-22 8.6E-27 145.2 15.9 157 11-171 3-170 (292)
182 cd04105 SR_beta Signal recogni 99.9 3.1E-22 6.7E-27 138.4 14.1 116 15-131 2-123 (203)
183 TIGR03594 GTPase_EngA ribosome 99.9 2E-22 4.3E-27 153.9 13.7 150 15-171 1-159 (429)
184 CHL00189 infB translation init 99.9 3.4E-22 7.3E-27 158.4 15.2 157 11-170 242-408 (742)
185 KOG3883 Ras family small GTPas 99.9 1.4E-21 3E-26 124.4 14.8 160 12-172 8-175 (198)
186 TIGR00475 selB selenocysteine- 99.9 5.8E-22 1.3E-26 155.2 16.1 150 14-171 1-165 (581)
187 PRK00093 GTP-binding protein D 99.9 1.4E-21 3.1E-26 149.4 17.4 156 11-170 171-342 (435)
188 PRK05306 infB translation init 99.9 1.3E-21 2.8E-26 156.3 17.4 155 10-169 287-449 (787)
189 PRK00093 GTP-binding protein D 99.9 4.4E-22 9.6E-27 152.2 13.9 147 14-169 2-159 (435)
190 TIGR00437 feoB ferrous iron tr 99.9 9.2E-22 2E-26 154.3 15.5 144 20-170 1-153 (591)
191 PRK12298 obgE GTPase CgtA; Rev 99.9 6.3E-22 1.4E-26 148.1 13.9 155 15-171 161-332 (390)
192 PRK09518 bifunctional cytidyla 99.9 1.2E-21 2.7E-26 157.0 16.2 153 12-171 274-435 (712)
193 PRK12317 elongation factor 1-a 99.9 1.4E-21 3.1E-26 148.8 14.4 154 10-163 3-196 (425)
194 cd00880 Era_like Era (E. coli 99.9 2.4E-21 5.2E-26 128.4 12.9 150 18-171 1-163 (163)
195 PRK09518 bifunctional cytidyla 99.9 2E-21 4.2E-26 155.9 14.1 156 12-171 449-620 (712)
196 TIGR00483 EF-1_alpha translati 99.9 2.8E-21 6E-26 147.2 14.1 153 10-162 4-197 (426)
197 COG1160 Predicted GTPases [Gen 99.9 1.1E-21 2.3E-26 145.4 11.1 152 14-171 4-164 (444)
198 COG2229 Predicted GTPase [Gene 99.9 8.6E-21 1.9E-25 124.6 14.0 158 8-170 5-176 (187)
199 COG0486 ThdF Predicted GTPase 99.9 3.9E-21 8.4E-26 142.8 14.0 152 12-171 216-375 (454)
200 COG1159 Era GTPase [General fu 99.9 1.4E-20 3.1E-25 132.7 15.4 157 11-171 4-171 (298)
201 PRK10218 GTP-binding protein; 99.9 2E-20 4.4E-25 146.4 17.3 156 13-171 5-194 (607)
202 cd01876 YihA_EngB The YihA (En 99.9 1.1E-20 2.5E-25 126.5 13.6 149 15-171 1-170 (170)
203 KOG4423 GTP-binding protein-li 99.9 1E-23 2.2E-28 138.2 -1.4 161 12-172 24-194 (229)
204 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.3E-20 2.8E-25 130.9 11.8 146 15-162 1-184 (208)
205 TIGR01394 TypA_BipA GTP-bindin 99.9 1.9E-20 4E-25 146.7 13.9 155 14-171 2-190 (594)
206 cd01896 DRG The developmentall 99.8 4.1E-20 8.9E-25 130.2 13.7 150 15-171 2-225 (233)
207 TIGR00491 aIF-2 translation in 99.8 3.7E-20 7.9E-25 144.6 14.5 151 13-169 4-213 (590)
208 cd01884 EF_Tu EF-Tu subfamily. 99.8 8.2E-20 1.8E-24 125.3 14.0 145 13-160 2-171 (195)
209 TIGR03680 eif2g_arch translati 99.8 3.8E-20 8.1E-25 140.0 13.1 159 11-171 2-195 (406)
210 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 2.7E-19 5.8E-24 124.8 14.1 156 15-172 1-176 (232)
211 KOG1707 Predicted Ras related/ 99.8 2.4E-20 5.1E-25 141.1 9.2 161 11-173 7-176 (625)
212 COG1160 Predicted GTPases [Gen 99.8 3.3E-19 7.1E-24 132.3 15.1 155 12-170 177-349 (444)
213 PRK04000 translation initiatio 99.8 1.7E-19 3.7E-24 136.5 13.8 162 7-171 3-200 (411)
214 PF10662 PduV-EutP: Ethanolami 99.8 1.2E-19 2.6E-24 116.7 11.0 134 15-168 3-142 (143)
215 cd01883 EF1_alpha Eukaryotic e 99.8 6E-20 1.3E-24 128.5 10.5 146 15-161 1-194 (219)
216 KOG0077 Vesicle coat complex C 99.8 2.2E-20 4.8E-25 120.4 7.3 155 12-171 19-192 (193)
217 cd04167 Snu114p Snu114p subfam 99.8 2.3E-19 5.1E-24 125.0 12.9 154 15-171 2-210 (213)
218 PRK04004 translation initiatio 99.8 5.8E-19 1.3E-23 138.3 15.6 153 11-169 4-215 (586)
219 PRK12735 elongation factor Tu; 99.8 5.1E-19 1.1E-23 133.5 14.8 158 10-170 9-201 (396)
220 PRK12736 elongation factor Tu; 99.8 4.8E-19 1E-23 133.6 14.6 159 10-171 9-200 (394)
221 COG0370 FeoB Fe2+ transport sy 99.8 3.9E-19 8.5E-24 137.4 14.0 152 12-170 2-162 (653)
222 TIGR00485 EF-Tu translation el 99.8 4.9E-19 1.1E-23 133.6 14.1 156 10-168 9-197 (394)
223 cd04165 GTPBP1_like GTPBP1-lik 99.8 8.5E-19 1.8E-23 122.7 13.7 152 15-169 1-220 (224)
224 PRK10512 selenocysteinyl-tRNA- 99.8 1.6E-18 3.5E-23 136.5 16.2 151 15-170 2-164 (614)
225 cd04168 TetM_like Tet(M)-like 99.8 5.4E-19 1.2E-23 124.7 12.0 132 15-149 1-148 (237)
226 cd04169 RF3 RF3 subfamily. Pe 99.8 1.2E-18 2.6E-23 124.9 13.6 118 14-134 3-140 (267)
227 COG0218 Predicted GTPase [Gene 99.8 5.6E-18 1.2E-22 113.7 14.7 154 12-171 23-196 (200)
228 KOG1423 Ras-like GTPase ERA [C 99.8 1.6E-18 3.5E-23 122.4 12.0 158 11-171 70-270 (379)
229 CHL00071 tufA elongation facto 99.8 5.1E-18 1.1E-22 128.6 14.9 147 10-159 9-180 (409)
230 cd01885 EF2 EF2 (for archaea a 99.8 6.4E-18 1.4E-22 117.8 12.7 113 15-130 2-138 (222)
231 KOG1489 Predicted GTP-binding 99.8 1.3E-17 2.7E-22 118.4 14.0 153 15-170 198-365 (366)
232 cd04104 p47_IIGP_like p47 (47- 99.8 1.7E-17 3.7E-22 114.3 14.3 153 13-172 1-184 (197)
233 PLN03126 Elongation factor Tu; 99.8 8.2E-18 1.8E-22 128.9 13.8 147 9-158 77-248 (478)
234 PLN00043 elongation factor 1-a 99.8 1.1E-17 2.3E-22 127.7 14.2 150 10-162 4-203 (447)
235 COG1084 Predicted GTPase [Gene 99.8 1.1E-17 2.4E-22 119.3 12.9 161 7-170 162-334 (346)
236 cd01850 CDC_Septin CDC/Septin. 99.8 1.5E-17 3.3E-22 119.7 13.8 140 13-156 4-186 (276)
237 TIGR02034 CysN sulfate adenyly 99.8 7.8E-18 1.7E-22 127.4 12.1 147 14-162 1-187 (406)
238 COG2262 HflX GTPases [General 99.8 2.1E-17 4.6E-22 121.2 13.7 156 11-172 190-356 (411)
239 PRK00049 elongation factor Tu; 99.8 3.7E-17 8.1E-22 123.4 15.4 157 10-169 9-200 (396)
240 cd01886 EF-G Elongation factor 99.8 1.1E-17 2.4E-22 120.0 11.9 115 15-132 1-131 (270)
241 cd04170 EF-G_bact Elongation f 99.8 1.2E-17 2.6E-22 120.3 12.1 143 15-160 1-161 (268)
242 PRK05124 cysN sulfate adenylyl 99.8 9.8E-18 2.1E-22 128.8 12.0 152 10-163 24-216 (474)
243 PTZ00141 elongation factor 1- 99.8 3.6E-17 7.8E-22 124.9 14.1 151 10-162 4-203 (446)
244 PLN03127 Elongation factor Tu; 99.8 6.9E-17 1.5E-21 123.2 15.2 158 10-170 58-250 (447)
245 KOG0462 Elongation factor-type 99.7 4.1E-17 8.8E-22 123.0 13.4 156 13-171 60-234 (650)
246 PRK13351 elongation factor G; 99.7 4.1E-17 8.9E-22 131.0 13.7 117 12-131 7-139 (687)
247 PRK05506 bifunctional sulfate 99.7 5.5E-17 1.2E-21 129.1 13.3 151 10-162 21-211 (632)
248 PRK00741 prfC peptide chain re 99.7 5.9E-17 1.3E-21 125.6 12.4 133 12-147 9-161 (526)
249 COG0532 InfB Translation initi 99.7 2E-16 4.2E-21 119.5 13.7 151 12-169 4-167 (509)
250 COG1163 DRG Predicted GTPase [ 99.7 6.2E-16 1.3E-20 110.3 14.9 152 13-171 63-288 (365)
251 COG0481 LepA Membrane GTPase L 99.7 3.3E-16 7.1E-21 116.6 13.6 155 14-171 10-185 (603)
252 COG5256 TEF1 Translation elong 99.7 2.1E-16 4.5E-21 116.1 12.1 153 10-162 4-201 (428)
253 cd01899 Ygr210 Ygr210 subfamil 99.7 7.1E-16 1.5E-20 112.7 14.4 81 16-96 1-110 (318)
254 KOG1191 Mitochondrial GTPase [ 99.7 7.3E-17 1.6E-21 120.4 9.2 158 13-171 268-449 (531)
255 TIGR00503 prfC peptide chain r 99.7 2E-16 4.4E-21 122.7 11.9 119 11-132 9-147 (527)
256 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 6.2E-16 1.3E-20 106.5 13.0 156 14-171 1-183 (196)
257 PF01926 MMR_HSR1: 50S ribosom 99.7 1.6E-16 3.4E-21 100.6 9.2 107 15-126 1-116 (116)
258 PTZ00327 eukaryotic translatio 99.7 3E-16 6.4E-21 119.7 12.2 160 10-171 31-232 (460)
259 PF09439 SRPRB: Signal recogni 99.7 1.4E-16 3E-21 106.9 8.4 116 13-132 3-127 (181)
260 PRK12739 elongation factor G; 99.7 7.2E-16 1.6E-20 123.7 13.9 117 12-131 7-139 (691)
261 TIGR00484 EF-G translation elo 99.7 4E-16 8.8E-21 125.2 12.3 143 12-157 9-171 (689)
262 COG3596 Predicted GTPase [Gene 99.7 3.5E-16 7.6E-21 109.4 9.9 160 10-171 36-221 (296)
263 KOG1145 Mitochondrial translat 99.7 1.9E-15 4.1E-20 114.3 13.2 151 12-169 152-313 (683)
264 COG2895 CysN GTPases - Sulfate 99.7 1.9E-15 4.2E-20 108.9 11.4 149 11-161 4-192 (431)
265 COG0536 Obg Predicted GTPase [ 99.6 9.7E-15 2.1E-19 105.0 12.4 154 15-171 161-332 (369)
266 PRK09866 hypothetical protein; 99.6 3.3E-14 7.2E-19 110.4 15.6 107 62-169 230-350 (741)
267 PRK12740 elongation factor G; 99.6 6.3E-15 1.4E-19 118.2 12.3 110 19-131 1-126 (668)
268 PRK00007 elongation factor G; 99.6 9.4E-15 2E-19 117.3 11.9 143 12-157 9-171 (693)
269 PRK09602 translation-associate 99.6 5.5E-14 1.2E-18 105.8 14.7 83 14-96 2-113 (396)
270 cd00066 G-alpha G protein alph 99.6 4.2E-14 9.1E-19 103.9 13.8 113 60-172 159-311 (317)
271 COG4917 EutP Ethanolamine util 99.6 3.8E-15 8.3E-20 92.1 6.5 136 15-169 3-143 (148)
272 TIGR00490 aEF-2 translation el 99.6 8.5E-15 1.9E-19 117.9 10.3 117 12-131 18-152 (720)
273 PRK13768 GTPase; Provisional 99.6 1.8E-14 3.9E-19 102.7 10.0 109 63-171 98-246 (253)
274 smart00275 G_alpha G protein a 99.6 6.9E-14 1.5E-18 103.6 13.4 113 60-172 182-334 (342)
275 KOG1490 GTP-binding protein CR 99.5 1.9E-14 4.2E-19 107.9 7.9 166 5-172 160-341 (620)
276 KOG1532 GTPase XAB1, interacts 99.5 1.6E-13 3.6E-18 96.1 11.1 108 61-171 115-263 (366)
277 TIGR00157 ribosome small subun 99.5 8.3E-14 1.8E-18 98.8 9.5 95 73-169 24-120 (245)
278 KOG0090 Signal recognition par 99.5 1.4E-13 3E-18 92.9 9.6 151 14-170 39-237 (238)
279 PRK14845 translation initiatio 99.5 2.1E-13 4.6E-18 112.1 12.1 100 64-169 528-670 (1049)
280 KOG0458 Elongation factor 1 al 99.5 6.5E-13 1.4E-17 101.3 13.7 154 9-162 173-372 (603)
281 TIGR00101 ureG urease accessor 99.5 6.1E-13 1.3E-17 91.6 12.3 99 62-172 92-196 (199)
282 cd01853 Toc34_like Toc34-like 99.5 4.5E-13 9.7E-18 95.1 11.9 120 10-131 28-163 (249)
283 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4.6E-13 9.9E-18 96.7 11.7 119 9-130 34-166 (313)
284 TIGR02836 spore_IV_A stage IV 99.5 5.8E-13 1.3E-17 98.9 11.9 154 13-168 17-233 (492)
285 COG1217 TypA Predicted membran 99.5 1E-12 2.2E-17 98.1 13.2 156 13-171 5-194 (603)
286 smart00010 small_GTPase Small 99.5 3.9E-14 8.4E-19 90.3 4.7 113 14-161 1-115 (124)
287 PRK07560 elongation factor EF- 99.5 6.9E-13 1.5E-17 107.3 12.4 116 12-130 19-152 (731)
288 PLN00116 translation elongatio 99.5 2.7E-13 5.8E-18 110.9 10.1 118 10-130 16-163 (843)
289 PF04548 AIG1: AIG1 family; I 99.5 5.2E-13 1.1E-17 93.0 10.1 156 14-171 1-185 (212)
290 PTZ00416 elongation factor 2; 99.5 4.3E-13 9.3E-18 109.6 10.0 116 12-130 18-157 (836)
291 PF05049 IIGP: Interferon-indu 99.4 7E-13 1.5E-17 98.1 9.5 155 11-171 33-217 (376)
292 KOG3905 Dynein light intermedi 99.4 5E-12 1.1E-16 90.7 13.0 158 12-172 51-290 (473)
293 PRK09435 membrane ATPase/prote 99.4 1.9E-12 4.2E-17 95.0 11.3 101 61-171 148-259 (332)
294 cd01882 BMS1 Bms1. Bms1 is an 99.4 6.2E-12 1.3E-16 88.3 12.8 139 11-160 37-184 (225)
295 COG4108 PrfC Peptide chain rel 99.4 2E-12 4.4E-17 95.8 10.4 138 12-152 11-168 (528)
296 PF03029 ATP_bind_1: Conserved 99.4 1.4E-13 3.1E-18 97.1 4.0 108 63-170 92-235 (238)
297 PF00735 Septin: Septin; Inte 99.4 8.3E-12 1.8E-16 90.1 12.5 137 13-152 4-181 (281)
298 KOG3886 GTP-binding protein [S 99.4 3.7E-13 8E-18 92.0 4.9 143 13-156 4-163 (295)
299 PTZ00258 GTP-binding protein; 99.4 1.8E-11 3.8E-16 91.6 14.3 84 11-96 19-126 (390)
300 KOG0461 Selenocysteine-specifi 99.4 1.1E-11 2.4E-16 89.7 12.1 155 12-172 6-193 (522)
301 PF05783 DLIC: Dynein light in 99.4 2.6E-11 5.6E-16 92.8 14.5 159 11-172 23-264 (472)
302 COG5257 GCD11 Translation init 99.4 3.5E-12 7.6E-17 91.3 9.0 159 11-171 8-201 (415)
303 KOG1707 Predicted Ras related/ 99.4 3.8E-11 8.3E-16 91.8 15.0 157 11-171 423-582 (625)
304 KOG0082 G-protein alpha subuni 99.4 9.2E-12 2E-16 91.2 10.9 113 60-172 193-344 (354)
305 TIGR00073 hypB hydrogenase acc 99.4 1.7E-11 3.7E-16 85.1 11.6 150 12-171 21-206 (207)
306 COG0480 FusA Translation elong 99.4 1.9E-11 4.1E-16 97.4 12.5 133 11-146 8-157 (697)
307 KOG1144 Translation initiation 99.3 2.3E-11 5E-16 95.3 11.2 157 11-170 473-685 (1064)
308 PF03308 ArgK: ArgK protein; 99.3 9.1E-12 2E-16 87.3 7.2 101 60-170 120-228 (266)
309 PRK09601 GTP-binding protein Y 99.3 2.1E-10 4.5E-15 85.1 14.6 81 14-96 3-107 (364)
310 COG0378 HypB Ni2+-binding GTPa 99.3 9.6E-11 2.1E-15 78.6 11.2 81 85-172 117-201 (202)
311 TIGR00750 lao LAO/AO transport 99.3 5.5E-11 1.2E-15 87.0 11.0 100 61-170 126-236 (300)
312 PF00350 Dynamin_N: Dynamin fa 99.3 2.7E-11 5.9E-16 81.3 8.6 63 63-127 102-168 (168)
313 COG0050 TufB GTPases - transla 99.3 7E-11 1.5E-15 83.8 10.1 156 11-169 10-198 (394)
314 KOG1486 GTP-binding protein DR 99.2 5.4E-10 1.2E-14 77.8 13.2 87 12-100 61-154 (364)
315 COG1703 ArgK Putative periplas 99.2 1.9E-11 4.2E-16 86.9 6.2 101 60-170 142-252 (323)
316 smart00053 DYNc Dynamin, GTPas 99.2 2.5E-10 5.4E-15 80.5 11.5 91 62-156 125-233 (240)
317 COG3276 SelB Selenocysteine-sp 99.2 1.8E-10 4E-15 85.7 10.9 155 15-171 2-161 (447)
318 cd01859 MJ1464 MJ1464. This f 99.2 6.9E-11 1.5E-15 78.5 7.7 92 77-171 4-95 (156)
319 KOG0410 Predicted GTP binding 99.2 5E-11 1.1E-15 85.6 7.2 148 13-171 178-340 (410)
320 KOG0468 U5 snRNP-specific prot 99.2 1.4E-10 3.1E-15 90.1 9.9 117 10-129 125-261 (971)
321 PRK12289 GTPase RsgA; Reviewed 99.2 9.5E-11 2.1E-15 87.0 8.4 94 75-170 79-173 (352)
322 KOG3887 Predicted small GTPase 99.2 2.7E-10 5.8E-15 78.9 9.1 157 14-172 28-202 (347)
323 COG5019 CDC3 Septin family pro 99.2 1.5E-09 3.2E-14 79.4 13.0 137 12-151 22-200 (373)
324 cd01854 YjeQ_engC YjeQ/EngC. 99.2 1.9E-10 4.1E-15 83.6 8.2 88 80-169 73-161 (287)
325 TIGR00993 3a0901s04IAP86 chlor 99.2 5.2E-10 1.1E-14 87.8 10.7 118 13-131 118-250 (763)
326 cd01855 YqeH YqeH. YqeH is an 99.1 1.9E-10 4E-15 78.9 7.5 92 75-171 24-124 (190)
327 PRK00098 GTPase RsgA; Reviewed 99.1 3.6E-10 7.7E-15 82.6 8.2 86 82-169 77-164 (298)
328 PF00503 G-alpha: G-protein al 99.1 2.7E-10 5.9E-15 86.3 7.7 112 60-171 234-389 (389)
329 KOG1547 Septin CDC10 and relat 99.1 2.7E-09 5.9E-14 73.9 11.2 140 13-156 46-227 (336)
330 PRK10463 hydrogenase nickel in 99.1 7.4E-10 1.6E-14 79.7 8.8 54 118-171 231-288 (290)
331 KOG2655 Septin family protein 99.1 7.4E-09 1.6E-13 76.2 13.8 140 13-155 21-200 (366)
332 COG0012 Predicted GTPase, prob 99.1 7E-09 1.5E-13 76.3 13.4 85 13-97 2-109 (372)
333 KOG0705 GTPase-activating prot 99.0 5.1E-10 1.1E-14 85.4 6.6 156 10-172 27-189 (749)
334 PRK12288 GTPase RsgA; Reviewed 99.0 2.2E-09 4.8E-14 79.8 9.2 86 83-170 118-206 (347)
335 KOG1143 Predicted translation 99.0 2.5E-09 5.4E-14 78.5 8.5 151 12-165 166-381 (591)
336 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.2E-09 2.6E-14 71.4 6.2 54 15-72 85-138 (141)
337 PF09547 Spore_IV_A: Stage IV 99.0 2.8E-08 6E-13 74.3 13.3 154 13-168 17-233 (492)
338 TIGR03597 GTPase_YqeH ribosome 99.0 1.7E-09 3.7E-14 81.0 7.0 93 72-169 50-150 (360)
339 KOG0463 GTP-binding protein GP 99.0 3.9E-09 8.4E-14 77.6 8.6 155 8-165 128-351 (641)
340 cd01858 NGP_1 NGP-1. Autoanti 99.0 3.6E-09 7.8E-14 70.3 7.3 57 12-72 101-157 (157)
341 cd04178 Nucleostemin_like Nucl 98.9 3.2E-09 6.9E-14 71.5 6.8 56 13-72 117-172 (172)
342 cd01900 YchF YchF subfamily. 98.9 3.5E-09 7.6E-14 76.1 7.1 79 16-96 1-103 (274)
343 KOG1954 Endocytosis/signaling 98.9 8E-09 1.7E-13 75.8 8.2 121 14-136 59-230 (532)
344 KOG2486 Predicted GTPase [Gene 98.9 2.2E-09 4.8E-14 75.7 4.9 152 11-169 134-313 (320)
345 KOG1487 GTP-binding protein DR 98.9 1.9E-08 4.1E-13 70.5 9.1 86 14-101 60-152 (358)
346 COG5258 GTPBP1 GTPase [General 98.9 6.1E-09 1.3E-13 76.7 6.7 156 10-168 114-335 (527)
347 cd01855 YqeH YqeH. YqeH is an 98.9 5.1E-09 1.1E-13 71.8 5.9 57 13-72 127-190 (190)
348 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.3E-08 2.8E-13 67.6 7.7 88 82-170 5-93 (157)
349 cd01856 YlqF YlqF. Proteins o 98.9 5.5E-09 1.2E-13 70.4 5.9 90 77-171 11-100 (171)
350 cd01856 YlqF YlqF. Proteins o 98.9 1.2E-08 2.5E-13 68.8 7.2 57 12-72 114-170 (171)
351 KOG0460 Mitochondrial translat 98.9 2.2E-08 4.8E-13 72.7 8.6 144 9-154 50-217 (449)
352 cd01849 YlqF_related_GTPase Yl 98.8 3E-08 6.4E-13 65.8 8.6 80 87-170 1-83 (155)
353 TIGR03596 GTPase_YlqF ribosome 98.8 1.5E-08 3.2E-13 73.4 7.2 58 11-72 116-173 (276)
354 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 2.2E-08 4.7E-13 65.4 7.3 75 82-159 8-84 (141)
355 cd01859 MJ1464 MJ1464. This f 98.8 2.1E-08 4.5E-13 66.5 7.1 56 12-71 100-155 (156)
356 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.4E-08 7.5E-13 71.9 8.1 59 11-73 119-177 (287)
357 COG1161 Predicted GTPases [Gen 98.8 2E-08 4.4E-13 74.1 6.9 59 11-73 130-188 (322)
358 TIGR03596 GTPase_YlqF ribosome 98.8 6.6E-08 1.4E-12 70.1 8.8 89 78-171 14-102 (276)
359 KOG0466 Translation initiation 98.7 8.3E-09 1.8E-13 73.9 3.4 109 62-171 125-240 (466)
360 COG5192 BMS1 GTP-binding prote 98.7 3.2E-07 7E-12 71.0 11.0 140 7-157 63-211 (1077)
361 KOG0467 Translation elongation 98.7 9.3E-08 2E-12 75.8 8.2 114 11-128 7-135 (887)
362 KOG0085 G protein subunit Galp 98.7 1.2E-08 2.6E-13 70.5 2.9 117 56-172 193-349 (359)
363 KOG0099 G protein subunit Galp 98.7 5.3E-08 1.1E-12 68.4 5.9 71 60-130 200-282 (379)
364 cd01849 YlqF_related_GTPase Yl 98.7 6.3E-08 1.4E-12 64.2 6.1 57 12-72 99-155 (155)
365 KOG0464 Elongation factor G [T 98.7 1.5E-08 3.2E-13 75.5 3.3 132 13-147 37-184 (753)
366 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.8E-07 3.9E-12 68.2 8.7 97 69-170 7-104 (287)
367 KOG4273 Uncharacterized conser 98.6 9.3E-07 2E-11 62.0 10.4 116 14-130 5-122 (418)
368 COG1618 Predicted nucleotide k 98.6 4.5E-06 9.8E-11 54.8 12.7 145 12-171 4-175 (179)
369 KOG0459 Polypeptide release fa 98.6 2.1E-07 4.5E-12 69.1 6.9 155 10-164 76-278 (501)
370 PRK13796 GTPase YqeH; Provisio 98.6 4.5E-07 9.8E-12 68.2 8.8 80 86-170 70-157 (365)
371 PRK13796 GTPase YqeH; Provisio 98.6 1.3E-07 2.8E-12 71.1 5.9 57 14-73 161-221 (365)
372 KOG1491 Predicted GTP-binding 98.6 4.8E-07 1E-11 65.8 8.2 88 10-97 17-126 (391)
373 TIGR03597 GTPase_YqeH ribosome 98.5 2.8E-07 6E-12 69.2 6.8 58 14-74 155-216 (360)
374 PRK12288 GTPase RsgA; Reviewed 98.5 2.7E-07 6E-12 68.7 6.5 59 15-76 207-271 (347)
375 TIGR03348 VI_IcmF type VI secr 98.5 3.9E-07 8.6E-12 77.7 7.6 111 16-131 114-257 (1169)
376 cd01851 GBP Guanylate-binding 98.5 1.9E-06 4E-11 60.7 9.8 86 11-97 5-103 (224)
377 PF03193 DUF258: Protein of un 98.5 1.9E-07 4.1E-12 61.8 4.3 59 14-75 36-100 (161)
378 PRK01889 GTPase RsgA; Reviewed 98.5 1.3E-06 2.7E-11 65.6 8.7 83 83-168 110-193 (356)
379 PRK10416 signal recognition pa 98.5 5.3E-06 1.2E-10 61.2 11.8 95 60-163 195-301 (318)
380 PRK12289 GTPase RsgA; Reviewed 98.4 4.6E-07 1E-11 67.6 5.9 57 15-75 174-237 (352)
381 TIGR00092 GTP-binding protein 98.4 1.2E-06 2.6E-11 65.4 8.0 81 14-96 3-108 (368)
382 KOG3859 Septins (P-loop GTPase 98.4 1.3E-06 2.8E-11 62.1 7.5 115 13-131 42-190 (406)
383 TIGR00064 ftsY signal recognit 98.4 7.9E-06 1.7E-10 59.1 11.3 95 60-163 153-259 (272)
384 PRK14974 cell division protein 98.4 8.2E-07 1.8E-11 65.8 5.7 95 61-164 222-322 (336)
385 TIGR01425 SRP54_euk signal rec 98.4 8.6E-06 1.9E-10 62.2 10.8 85 61-152 182-272 (429)
386 KOG0448 Mitofusin 1 GTPase, in 98.3 1.3E-05 2.9E-10 63.3 11.7 66 63-132 207-276 (749)
387 KOG0465 Mitochondrial elongati 98.3 3.5E-06 7.5E-11 65.7 8.2 126 13-141 39-180 (721)
388 TIGR00157 ribosome small subun 98.3 1.3E-06 2.9E-11 62.2 5.7 58 14-75 121-184 (245)
389 PF06858 NOG1: Nucleolar GTP-b 98.3 3.2E-06 7E-11 45.6 5.5 43 86-128 14-58 (58)
390 COG1162 Predicted GTPases [Gen 98.3 9.7E-06 2.1E-10 58.7 9.5 94 75-170 69-165 (301)
391 COG1162 Predicted GTPases [Gen 98.3 2E-06 4.3E-11 62.1 5.6 59 15-76 166-230 (301)
392 cd03114 ArgK-like The function 98.3 6E-06 1.3E-10 54.3 7.4 58 61-128 91-148 (148)
393 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.7E-06 5.9E-11 62.1 6.2 59 14-75 162-226 (287)
394 PF03266 NTPase_1: NTPase; In 98.2 2.6E-05 5.5E-10 52.4 10.2 135 15-160 1-163 (168)
395 PRK00098 GTPase RsgA; Reviewed 98.2 3.4E-06 7.3E-11 61.9 6.2 58 14-74 165-228 (298)
396 COG3640 CooC CO dehydrogenase 98.2 8.7E-06 1.9E-10 56.6 7.5 63 63-130 135-198 (255)
397 cd03112 CobW_like The function 98.2 9.7E-06 2.1E-10 53.9 7.2 64 61-129 86-158 (158)
398 cd03115 SRP The signal recogni 98.2 1.9E-05 4.2E-10 53.2 8.7 82 61-149 82-169 (173)
399 KOG1424 Predicted GTP-binding 98.2 3.7E-06 8E-11 64.4 5.2 55 13-71 314-368 (562)
400 PRK13695 putative NTPase; Prov 98.2 0.00011 2.4E-09 49.6 11.9 48 116-171 125-172 (174)
401 cd02038 FleN-like FleN is a me 98.1 1.8E-05 4E-10 51.4 7.3 106 18-130 5-110 (139)
402 COG3523 IcmF Type VI protein s 98.1 6.8E-06 1.5E-10 69.3 5.7 114 16-131 128-270 (1188)
403 KOG0469 Elongation factor 2 [T 98.1 2.7E-05 5.8E-10 59.9 8.3 115 13-130 19-163 (842)
404 KOG2485 Conserved ATP/GTP bind 98.1 6.3E-06 1.4E-10 59.5 4.3 63 11-73 141-207 (335)
405 PRK11889 flhF flagellar biosyn 98.0 1.2E-05 2.6E-10 60.6 5.9 92 61-161 320-417 (436)
406 PRK14722 flhF flagellar biosyn 98.0 5.3E-05 1.1E-09 57.0 9.3 138 13-152 137-314 (374)
407 PRK12727 flagellar biosynthesi 98.0 0.00013 2.8E-09 57.1 11.2 91 61-160 428-523 (559)
408 PF02492 cobW: CobW/HypB/UreG, 98.0 6.3E-06 1.4E-10 55.9 3.2 80 61-145 84-170 (178)
409 PF00448 SRP54: SRP54-type pro 98.0 3E-06 6.6E-11 58.3 1.3 86 61-153 83-174 (196)
410 KOG2484 GTPase [General functi 97.9 9.5E-06 2.1E-10 60.4 3.4 58 11-72 250-307 (435)
411 KOG0447 Dynamin-like GTP bindi 97.9 8.1E-05 1.8E-09 58.0 8.5 77 56-134 405-496 (980)
412 PRK14721 flhF flagellar biosyn 97.9 0.00012 2.5E-09 56.1 8.9 139 13-160 191-365 (420)
413 PRK10867 signal recognition pa 97.9 0.00011 2.3E-09 56.5 8.5 87 61-154 183-275 (433)
414 PRK00771 signal recognition pa 97.9 0.0002 4.3E-09 55.2 9.9 84 62-153 176-266 (437)
415 PRK05703 flhF flagellar biosyn 97.9 0.00028 6E-09 54.3 10.5 91 61-160 299-396 (424)
416 COG1419 FlhF Flagellar GTP-bin 97.8 8.4E-05 1.8E-09 56.0 7.3 132 13-152 203-371 (407)
417 TIGR00959 ffh signal recogniti 97.8 0.00037 8E-09 53.6 10.9 87 61-154 182-274 (428)
418 COG0194 Gmk Guanylate kinase [ 97.8 1.3E-05 2.7E-10 54.0 2.5 50 14-65 5-54 (191)
419 COG0523 Putative GTPases (G3E 97.8 0.00085 1.8E-08 49.7 12.2 88 62-154 85-184 (323)
420 PF13207 AAA_17: AAA domain; P 97.8 2.5E-05 5.4E-10 49.4 3.2 21 15-35 1-21 (121)
421 cd03111 CpaE_like This protein 97.8 0.00017 3.6E-09 44.7 6.8 101 16-126 2-106 (106)
422 PRK14723 flhF flagellar biosyn 97.7 0.00024 5.3E-09 57.9 8.9 94 61-160 263-362 (767)
423 PRK12724 flagellar biosynthesi 97.7 0.00019 4.2E-09 54.7 7.8 134 13-153 223-393 (432)
424 COG0563 Adk Adenylate kinase a 97.7 3.3E-05 7E-10 52.4 3.1 23 14-36 1-23 (178)
425 PRK08118 topology modulation p 97.7 3.4E-05 7.4E-10 51.8 3.2 21 15-35 3-23 (167)
426 cd02042 ParA ParA and ParB of 97.7 0.00024 5.2E-09 43.6 6.7 82 16-109 2-84 (104)
427 PRK14738 gmk guanylate kinase; 97.7 6.3E-05 1.4E-09 52.3 4.4 26 11-36 11-36 (206)
428 PF03215 Rad17: Rad17 cell cyc 97.7 0.00062 1.3E-08 53.6 10.2 83 87-170 133-228 (519)
429 PRK14737 gmk guanylate kinase; 97.7 3.3E-05 7.2E-10 52.8 2.8 23 14-36 5-27 (186)
430 PRK07261 topology modulation p 97.7 4E-05 8.7E-10 51.7 3.2 21 15-35 2-22 (171)
431 PRK06995 flhF flagellar biosyn 97.6 0.0001 2.2E-09 57.2 5.2 91 61-160 334-430 (484)
432 PF13671 AAA_33: AAA domain; P 97.6 4.9E-05 1.1E-09 49.4 3.0 19 16-34 2-20 (143)
433 PF13555 AAA_29: P-loop contai 97.6 6.6E-05 1.4E-09 41.5 3.0 21 15-35 25-45 (62)
434 KOG2423 Nucleolar GTPase [Gene 97.6 2.1E-05 4.4E-10 58.8 1.2 83 10-99 304-388 (572)
435 PRK12726 flagellar biosynthesi 97.6 6E-05 1.3E-09 56.6 3.5 86 61-153 285-376 (407)
436 PRK11537 putative GTP-binding 97.6 0.00091 2E-08 49.6 9.4 84 62-152 91-185 (318)
437 cd03110 Fer4_NifH_child This p 97.6 0.00073 1.6E-08 45.8 8.3 85 60-150 91-175 (179)
438 cd00071 GMPK Guanosine monopho 97.6 9.5E-05 2.1E-09 48.0 3.6 21 16-36 2-22 (137)
439 PF13521 AAA_28: AAA domain; P 97.6 5.2E-05 1.1E-09 50.6 2.4 22 15-36 1-22 (163)
440 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00088 1.9E-08 40.1 7.6 69 16-98 2-71 (99)
441 cd02036 MinD Bacterial cell di 97.5 0.0012 2.7E-08 44.4 8.9 84 63-150 64-147 (179)
442 PRK06731 flhF flagellar biosyn 97.5 0.0015 3.3E-08 47.2 9.7 92 61-161 154-251 (270)
443 cd02019 NK Nucleoside/nucleoti 97.5 0.00012 2.5E-09 41.7 3.0 20 16-35 2-21 (69)
444 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0005 1.1E-08 46.6 6.5 22 14-35 26-47 (177)
445 PF07015 VirC1: VirC1 protein; 97.4 0.0003 6.4E-09 49.3 4.9 101 61-165 83-187 (231)
446 PRK12723 flagellar biosynthesi 97.4 0.0022 4.7E-08 48.8 9.9 92 60-160 253-351 (388)
447 TIGR02475 CobW cobalamin biosy 97.4 0.0038 8.2E-08 46.8 11.1 21 16-36 7-27 (341)
448 cd00009 AAA The AAA+ (ATPases 97.4 0.00075 1.6E-08 43.5 6.7 25 13-37 19-43 (151)
449 KOG1534 Putative transcription 97.4 0.00016 3.6E-09 49.7 3.5 23 13-35 3-25 (273)
450 KOG1533 Predicted GTPase [Gene 97.4 7.2E-05 1.6E-09 52.2 1.7 19 14-32 3-21 (290)
451 PRK06217 hypothetical protein; 97.4 0.00015 3.3E-09 49.4 3.2 22 14-35 2-23 (183)
452 PF11111 CENP-M: Centromere pr 97.4 0.016 3.5E-07 38.8 12.7 136 12-170 14-151 (176)
453 TIGR03263 guanyl_kin guanylate 97.4 0.00024 5.1E-09 48.2 4.0 21 15-35 3-23 (180)
454 PF00005 ABC_tran: ABC transpo 97.4 0.00018 3.8E-09 46.5 3.2 22 15-36 13-34 (137)
455 PRK03839 putative kinase; Prov 97.4 0.00017 3.7E-09 49.0 3.2 21 15-35 2-22 (180)
456 cd04178 Nucleostemin_like Nucl 97.4 0.001 2.2E-08 44.9 6.9 47 87-134 1-47 (172)
457 COG1136 SalX ABC-type antimicr 97.4 0.00015 3.3E-09 50.7 3.0 22 15-37 33-54 (226)
458 PF13238 AAA_18: AAA domain; P 97.4 0.00018 3.8E-09 45.7 3.0 21 16-36 1-21 (129)
459 PRK08233 hypothetical protein; 97.4 0.00023 4.9E-09 48.2 3.6 23 13-35 3-25 (182)
460 PRK05480 uridine/cytidine kina 97.4 0.00025 5.4E-09 49.4 3.8 25 11-35 4-28 (209)
461 PRK14530 adenylate kinase; Pro 97.4 0.00021 4.5E-09 50.0 3.4 22 14-35 4-25 (215)
462 smart00072 GuKc Guanylate kina 97.4 0.00019 4.2E-09 48.9 3.2 23 15-37 4-26 (184)
463 TIGR00235 udk uridine kinase. 97.3 0.00026 5.6E-09 49.2 3.8 25 11-35 4-28 (207)
464 COG1126 GlnQ ABC-type polar am 97.3 0.0002 4.3E-09 49.5 2.8 19 15-33 30-48 (240)
465 PLN02200 adenylate kinase fami 97.3 0.00037 8E-09 49.4 4.3 24 12-35 42-65 (234)
466 COG3840 ThiQ ABC-type thiamine 97.3 0.00028 6.1E-09 47.6 3.5 24 15-38 27-50 (231)
467 PF00625 Guanylate_kin: Guanyl 97.3 6.9E-05 1.5E-09 51.0 0.6 21 15-35 4-24 (183)
468 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0012 2.6E-08 51.6 7.1 84 87-170 195-282 (634)
469 PF04665 Pox_A32: Poxvirus A32 97.3 0.00025 5.5E-09 50.2 3.3 26 11-36 11-36 (241)
470 PF00004 AAA: ATPase family as 97.3 0.00026 5.6E-09 45.2 3.1 21 16-36 1-21 (132)
471 TIGR02322 phosphon_PhnN phosph 97.3 0.00024 5.2E-09 48.1 3.0 22 15-36 3-24 (179)
472 smart00382 AAA ATPases associa 97.3 0.00028 6E-09 45.1 3.2 25 14-38 3-27 (148)
473 COG1116 TauB ABC-type nitrate/ 97.3 0.00025 5.3E-09 50.0 2.9 20 16-35 32-51 (248)
474 PRK10078 ribose 1,5-bisphospho 97.3 0.00028 6.1E-09 48.2 3.2 21 15-35 4-24 (186)
475 PRK01889 GTPase RsgA; Reviewed 97.3 0.00042 9E-09 52.2 4.3 23 14-36 196-218 (356)
476 COG1161 Predicted GTPases [Gen 97.3 0.00073 1.6E-08 50.2 5.5 93 68-165 16-110 (322)
477 PRK13949 shikimate kinase; Pro 97.3 0.0003 6.5E-09 47.3 3.2 21 15-35 3-23 (169)
478 PRK14532 adenylate kinase; Pro 97.2 0.00029 6.4E-09 48.1 3.1 21 15-35 2-22 (188)
479 PF03205 MobB: Molybdopterin g 97.2 0.00034 7.3E-09 45.6 3.2 22 15-36 2-23 (140)
480 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00028 6.1E-09 48.0 2.9 20 15-34 5-24 (188)
481 PRK14531 adenylate kinase; Pro 97.2 0.00035 7.6E-09 47.6 3.2 22 14-35 3-24 (183)
482 PLN02924 thymidylate kinase 97.2 0.00063 1.4E-08 47.8 4.5 34 1-34 4-37 (220)
483 TIGR00150 HI0065_YjeE ATPase, 97.2 0.0014 3.1E-08 42.1 5.8 23 14-36 23-45 (133)
484 PTZ00088 adenylate kinase 1; P 97.2 0.00038 8.2E-09 49.2 3.4 23 13-35 6-28 (229)
485 KOG3347 Predicted nucleotide k 97.2 0.0003 6.5E-09 45.8 2.6 24 11-34 5-28 (176)
486 PRK00625 shikimate kinase; Pro 97.2 0.00039 8.4E-09 47.0 3.2 21 15-35 2-22 (173)
487 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00038 8.3E-09 43.0 2.8 21 14-34 16-36 (107)
488 cd01428 ADK Adenylate kinase ( 97.2 0.00034 7.4E-09 47.9 2.8 21 15-35 1-21 (194)
489 cd02023 UMPK Uridine monophosp 97.2 0.00037 8.1E-09 48.0 3.0 20 16-35 2-21 (198)
490 PRK04195 replication factor C 97.2 0.0055 1.2E-07 48.2 9.7 24 13-36 39-62 (482)
491 PF07728 AAA_5: AAA domain (dy 97.2 0.00044 9.5E-09 44.8 3.1 21 15-35 1-21 (139)
492 COG1936 Predicted nucleotide k 97.2 0.00039 8.3E-09 46.4 2.8 21 14-34 1-21 (180)
493 PRK06547 hypothetical protein; 97.2 0.00056 1.2E-08 46.2 3.7 27 10-36 12-38 (172)
494 cd03238 ABC_UvrA The excision 97.2 0.00044 9.6E-09 46.8 3.2 21 14-34 22-42 (176)
495 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00039 8.4E-09 47.2 2.9 20 16-35 2-21 (183)
496 COG0552 FtsY Signal recognitio 97.1 0.00092 2E-08 49.2 4.9 143 11-163 137-326 (340)
497 cd01131 PilT Pilus retraction 97.1 0.0017 3.6E-08 44.9 6.0 22 16-37 4-25 (198)
498 KOG0057 Mitochondrial Fe/S clu 97.1 0.00091 2E-08 52.2 5.1 22 14-35 379-400 (591)
499 PLN02772 guanylate kinase 97.1 0.00062 1.3E-08 51.5 4.1 25 12-36 134-158 (398)
500 TIGR01351 adk adenylate kinase 97.1 0.00039 8.5E-09 48.4 2.8 21 15-35 1-21 (210)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-42 Score=225.14 Aligned_cols=161 Identities=34% Similarity=0.615 Sum_probs=150.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|.+|+|||+|+.||..+.+++.+..|+|+++...+..++++.+++++|||+||++|+++...||++++++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccccH-HHHHHHHHcCCc-EEEEccCCCCChHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~~~~-~~~~S~~~~~~i~~~~~~i 167 (173)
|||+++.+||+.+..|+.++.++. +++|.++||||+|+.+ +.+.. +...++.+++++ ++++||+++.++.+.|..|
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence 999999999999999999999986 6789999999999987 33333 455899999999 9999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
+..+.
T Consensus 168 a~~lk 172 (205)
T KOG0084|consen 168 AKELK 172 (205)
T ss_pred HHHHH
Confidence 88764
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-40 Score=214.44 Aligned_cols=162 Identities=34% Similarity=0.610 Sum_probs=149.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
..++|++++|..++|||||+-|+..+.|.+...+|+|..+...++.+++..++|.+|||+|+++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||+++.+||..++.|+..+.+.. +++-+.+||||+||.+ +.+ .++...++...++.|+++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 9999999999999999999998875 5677788999999987 444 445668999999999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 163 a~~lp 167 (200)
T KOG0092|consen 163 AEKLP 167 (200)
T ss_pred HHhcc
Confidence 99875
No 3
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3.2e-39 Score=225.50 Aligned_cols=172 Identities=99% Similarity=1.607 Sum_probs=155.8
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030686 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|++++....+...+||+++|.+|+|||||+++++.+.+...+.++.|.+.....+..++..+.+.+||++|++++..++.
T Consensus 1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 80 (219)
T PLN03071 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (219)
T ss_pred CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 67777777778889999999999999999999999999888899999888887777777789999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.++++++++|+|||++++++++.+..|+..+.+..++.|+++|+||+|+.++....+...++...++.|+++||++|.|+
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 99999999999999999999999999999998877899999999999997665544445777788899999999999999
Q ss_pred HHHHHHHHHHhh
Q 030686 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
.++|+++++.+.
T Consensus 161 ~~~f~~l~~~~~ 172 (219)
T PLN03071 161 EKPFLYLARKLA 172 (219)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2e-39 Score=206.85 Aligned_cols=165 Identities=30% Similarity=0.513 Sum_probs=151.1
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.....+||+++|.+|+|||+|+-+|..+.+.+....|+|+++....+.+++..+++.+|||+|+++|+.++..||+++.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 34457999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc-c-cccHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
+|+|||++.+++|..+..|+.++..++ +++-.++|+||+|... + ...++...+++++++-|+++||++.+|++..|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 999999999999999999999999886 4666789999999873 3 33456679999999999999999999999999
Q ss_pred HHHHHHhhC
Q 030686 165 LYLARKLAG 173 (173)
Q Consensus 165 ~~i~~~i~~ 173 (173)
+.+..+|++
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999998864
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-39 Score=211.07 Aligned_cols=165 Identities=32% Similarity=0.575 Sum_probs=150.0
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
....+.+|++++|..++||||||.+|..+.+...|.+|+|+++...++.+.+..+.+++|||+|||+|+.+...|+++++
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
++|+|||+++..||+...+|++.+.... .++-+++||||.||.+ ++.. ++....+++++..|.++||+.|.|+.++
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 9999999999999999999999998875 2466789999999987 3333 3445789999999999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|..|+..+.
T Consensus 177 FrrIaa~l~ 185 (221)
T KOG0094|consen 177 FRRIAAALP 185 (221)
T ss_pred HHHHHHhcc
Confidence 999887654
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-38 Score=212.89 Aligned_cols=164 Identities=32% Similarity=0.605 Sum_probs=152.8
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.....+||+++|.++||||+|+.+|..+.+...+..|.|+++...++..++..+.+++|||+||++|+.+...|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+++|||+++..||+.+..|+..+.++.+ ++|.++||||+|+.. +.+ .+...++|.++++.|+|+||++|.||.+.|-
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 9999999999999999999999999874 899999999999987 444 3445689999999999999999999999999
Q ss_pred HHHHHhh
Q 030686 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
.+++.++
T Consensus 168 ~La~~i~ 174 (207)
T KOG0078|consen 168 SLARDIL 174 (207)
T ss_pred HHHHHHH
Confidence 9999876
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.5e-38 Score=215.98 Aligned_cols=161 Identities=24% Similarity=0.524 Sum_probs=145.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|..|+|||||+.+|..+.+...+.++.+.+.....+..++..+.+.+||++|+++|..++..+++++|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 46999999999999999999999888887778888888877777778888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|||++++++++.+..|++.+....++.|+++|+||+|+.+ +.. .++...+++..++.++++||++|.|++++|+++++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999999988778999999999999975 233 33456888889999999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 165 ~i~ 167 (189)
T cd04121 165 IVL 167 (189)
T ss_pred HHH
Confidence 765
No 8
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-39 Score=208.62 Aligned_cols=162 Identities=33% Similarity=0.557 Sum_probs=151.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+|++++|..|+|||+|+.+|..+.|.+.+..|+|+++-...+.++++.+++++|||+|++.+++.++.||+.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc--ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++.+++|..+..|+..++++. +|..+++++||+||..+. ..++...||+++++.+.++||++++|+.|+|...
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999984 899999999999998633 3445678999999999999999999999999998
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
...+.
T Consensus 164 a~~Iy 168 (216)
T KOG0098|consen 164 AKEIY 168 (216)
T ss_pred HHHHH
Confidence 88765
No 9
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.6e-37 Score=209.86 Aligned_cols=158 Identities=28% Similarity=0.475 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+++|||+|+.++..+.+...+.+|.+... ...+..++..+.+.+|||+|+++++.++..++++++++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888899998665 345667788899999999999999999999999999999999
Q ss_pred ECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccc------------cccHHHHHHHHHcCC-cEEEEccCCCCC
Q 030686 94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR------------QVKAKQVTFHRKKNL-QYYEISAKSNYN 159 (173)
Q Consensus 94 d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 159 (173)
|+++++||+.+ ..|+..+....++.|+++|+||+|+.+. ...++..+++...++ .|+++||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 6899999877778999999999999653 223345678888887 599999999999
Q ss_pred hHHHHHHHHHHhh
Q 030686 160 FEKPFLYLARKLA 172 (173)
Q Consensus 160 i~~~~~~i~~~i~ 172 (173)
++++|+.+++.+.
T Consensus 161 V~~~F~~~~~~~~ 173 (176)
T cd04133 161 VKAVFDAAIKVVL 173 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.6e-37 Score=213.79 Aligned_cols=159 Identities=29% Similarity=0.610 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+.|+++|..|+|||||+.++..+.+...+.+|.+.++....+..++..+.+.+|||+|+++|+.++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888899998888777888888899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccccH-HHHHHHHHc-CCcEEEEccCCCCChHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|+++++|++.+..|+..+.+.. ++.|+++|+||+|+.+ +.... +..+++.+. ++.++++||++|.|+.++|+++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887664 5799999999999965 33333 344667664 789999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 161 ~~~ 163 (202)
T cd04120 161 DIL 163 (202)
T ss_pred HHH
Confidence 764
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.8e-37 Score=210.72 Aligned_cols=161 Identities=24% Similarity=0.399 Sum_probs=142.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+++|||||+.++..+.+...+.||.+... ...+.+++..+.+.+|||+|+++|..++..+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4579999999999999999999999999888899997655 356677888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccc--------------cccHHHHHHHHHcCC-cEEEEcc
Q 030686 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|||+++++||+.+ ..|+..+.+..++.|+++|+||+|+.+. ...++..+++++.++ .|+++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997 7899999888889999999999998641 223456689999995 8999999
Q ss_pred CCCCC-hHHHHHHHHHHhh
Q 030686 155 KSNYN-FEKPFLYLARKLA 172 (173)
Q Consensus 155 ~~~~~-i~~~~~~i~~~i~ 172 (173)
++|.| ++++|+.+++.++
T Consensus 162 k~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 162 LQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 99998 9999999988654
No 12
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.3e-37 Score=211.46 Aligned_cols=160 Identities=31% Similarity=0.536 Sum_probs=139.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.+||+++|.+++|||||+.++..+.+...+.+|.+.... .....++..+.+.+|||+|+++|+.++..+++++|++++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 4689999999999999999999999998888999986543 445667788999999999999999999999999999999
Q ss_pred EEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHHcC-CcEEEEccC
Q 030686 92 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAK 155 (173)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S~~ 155 (173)
|||+++++|++.+. .|+..+....++.|+++|+||+|+.+.. ..++..+++.+.+ +.++++||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999997 5888887777799999999999996531 1234456787787 589999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030686 156 SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i~ 172 (173)
+|.|++++|+++++.++
T Consensus 161 ~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 161 NQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998775
No 13
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=7.3e-37 Score=205.50 Aligned_cols=160 Identities=88% Similarity=1.432 Sum_probs=144.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888899988887777777778899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhhC
Q 030686 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~~ 173 (173)
|++++++++.+..|+..+.....+.|+++|+||+|+.++....+..+++...++.++++||++|.|+.++|++|++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999988877899999999999986655555556777788999999999999999999999988763
No 14
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.5e-37 Score=207.27 Aligned_cols=159 Identities=23% Similarity=0.388 Sum_probs=140.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|++|+|||||++++..+.++..+.+|.+.... ..+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999998888999876653 5667788889999999999999999999999999999999
Q ss_pred EECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccc--------------cccHHHHHHHHHcCC-cEEEEccCC
Q 030686 93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (173)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~~~ 156 (173)
||+++++||+.+ ..|+..+.+.+++.|+++|+||+|+.+. ...++..+++.+.++ .|+++||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 7899999888889999999999999541 223456689999997 799999999
Q ss_pred CCC-hHHHHHHHHHHhh
Q 030686 157 NYN-FEKPFLYLARKLA 172 (173)
Q Consensus 157 ~~~-i~~~~~~i~~~i~ 172 (173)
|++ ++++|..+++..+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999988654
No 15
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.5e-37 Score=200.68 Aligned_cols=162 Identities=32% Similarity=0.648 Sum_probs=148.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||+|++++..++|...+..|+|.++...++.+++..+.+++|||+|+++|+++...|++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCcc---ccccHH-HHHHHHHc-CCcEEEEccCCCCCh
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKK-NLQYYEISAKSNYNF 160 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~---~~~~~~-~~~~~~~~-~~~~~~~S~~~~~~i 160 (173)
+|||++++.||+.+..|..++.... ...|+||+|||+|+.. +.+..+ .+.||... +++||++||+...|+
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 9999999999999999999997764 3689999999999976 555554 45788765 689999999999999
Q ss_pred HHHHHHHHHHhh
Q 030686 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
.+.|+.+.+..+
T Consensus 167 ~~AFe~ia~~aL 178 (210)
T KOG0394|consen 167 DEAFEEIARRAL 178 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 16
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-37 Score=194.15 Aligned_cols=159 Identities=28% Similarity=0.565 Sum_probs=147.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+|++++|...+|||+|+.+++...+...+.+|.|+++...++....+.+++++|||.|+|+|+.++..++++++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 47999999999999999999999999999999999999999888777889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccc-c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||+++.+|+..++.|...+..++ .|.|+++|+||||+.++.. . +....++.+.|..||++||+.+.|++++|+.+..
T Consensus 101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence 99999999999999999999886 7999999999999987543 3 3456899999999999999999999999999887
Q ss_pred Hh
Q 030686 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.|
T Consensus 181 ~I 182 (193)
T KOG0093|consen 181 II 182 (193)
T ss_pred HH
Confidence 65
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.3e-36 Score=211.37 Aligned_cols=161 Identities=21% Similarity=0.356 Sum_probs=142.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||+|+.+|..+.+...+.||.+.+.. ..+.+++..+.+.+|||+|++.|..++..+++++|+++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45799999999999999999999999999899999986654 45677888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcc-------------ccc-cHHHHHHHHHcCC-cEEEEcc
Q 030686 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQV-KAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------~~~-~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|||++++++|+.+ ..|+..+.+..++.|+++|+||+|+.+ +.+ .++..+++.+.++ .|+++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 99999999999985 789999988778899999999999964 222 3356689999998 6999999
Q ss_pred CCCC-ChHHHHHHHHHHhh
Q 030686 155 KSNY-NFEKPFLYLARKLA 172 (173)
Q Consensus 155 ~~~~-~i~~~~~~i~~~i~ 172 (173)
++|. |++++|+.++..++
T Consensus 170 ktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CcCCcCHHHHHHHHHHHHH
Confidence 9998 89999999988764
No 18
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.9e-36 Score=207.76 Aligned_cols=159 Identities=35% Similarity=0.606 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+||+++|++|+|||||+++|+.+.+...+.+|.+.+.....+..+ +..+.+.+||++|++++..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888889999888776667766 7789999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCcc--ccccHHHHHHHHHcC-CcEEEEccCCCCChHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~ 164 (173)
||++++++++.+..|+..+.... .++|+++|+||+|+.+ .....+..+++...+ ..++++||++|.|+.++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886532 5789999999999973 334445567888888 689999999999999999
Q ss_pred HHHHHHhh
Q 030686 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
+++.+.++
T Consensus 161 ~~l~~~l~ 168 (201)
T cd04107 161 RFLVKNIL 168 (201)
T ss_pred HHHHHHHH
Confidence 99998775
No 19
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.6e-36 Score=207.53 Aligned_cols=154 Identities=87% Similarity=1.416 Sum_probs=141.4
Q ss_pred EcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCCh
Q 030686 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 98 (173)
Q Consensus 19 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 98 (173)
+|.+|+|||||+++++.+.+...+.+|.|.+.....+..++..+.+.+|||+|+++++.++..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 59999999999999998888888899999999888888888889999999999999999999999999999999999999
Q ss_pred hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 99 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 99 ~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
.+++.+..|+..+.+.+++.|+++|+||+|+..+....+...++...++.|+++||++|.|+.++|+++++.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998877899999999999997665555556778888999999999999999999999998775
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3.9e-36 Score=201.98 Aligned_cols=161 Identities=34% Similarity=0.555 Sum_probs=142.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999988888888888888777777788889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++++.+..|+..+.... ++.|+++|+||+|+.... . .++..+++...++.++++||++|.|+.++|+++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998886653 578999999999997643 2 34556788888999999999999999999999998
Q ss_pred HhhC
Q 030686 170 KLAG 173 (173)
Q Consensus 170 ~i~~ 173 (173)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8753
No 21
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=194.19 Aligned_cols=160 Identities=33% Similarity=0.604 Sum_probs=150.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
-++.+|+|.+|+|||+|+-+|..+.|...|..|.|.++...++.+++..+.+++||++|+++|+.+...|+++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
||+++.+||...++|+++++..++.+|-++|+||+|.+++.. .++...++...++.+|++|++.++|+...|..|.++
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 999999999999999999999999999999999999988554 445678999999999999999999999999999887
Q ss_pred hh
Q 030686 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
++
T Consensus 168 vl 169 (198)
T KOG0079|consen 168 VL 169 (198)
T ss_pred HH
Confidence 64
No 22
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=7.7e-36 Score=203.07 Aligned_cols=158 Identities=24% Similarity=0.405 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+++++.+.+...+.+|.|.+.....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998887777778888899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-------cccHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
|++++++++.+..|+..+.+..+ +.| ++|+||+|+... ....+..+++...+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999877643 455 678999999531 112234467788889999999999999999999
Q ss_pred HHHHHhh
Q 030686 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
++.+.++
T Consensus 160 ~l~~~l~ 166 (182)
T cd04128 160 IVLAKAF 166 (182)
T ss_pred HHHHHHH
Confidence 9998775
No 23
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.5e-35 Score=198.19 Aligned_cols=158 Identities=30% Similarity=0.520 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||++++..+.+.+.+.++.+.+........++..+.+.+|||+|++++..++..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888877788777777667777778899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|++++.+++.+..|+..+.+..++.|+++|+||+|+.... ..+..+++...+++++++||++|.|++++|+.+.+.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998877789999999999985432 23345666677889999999999999999999998765
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=7.8e-36 Score=201.51 Aligned_cols=159 Identities=30% Similarity=0.501 Sum_probs=138.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|+|||||++++..+.+...+.++.+... ...+..++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 58999999999999999999999999888888887444 34566677889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+..|+..+.+. .++.|+++|+||+|+.+. ... ++..++++..+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999888887664 258999999999998653 333 345578888899999999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 161 ~~~~ 164 (172)
T cd04141 161 REIR 164 (172)
T ss_pred HHHH
Confidence 8765
No 25
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2e-35 Score=200.03 Aligned_cols=157 Identities=25% Similarity=0.433 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+.++..+.+...+.||.+.... ..+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888899876554 34566777899999999999999999999999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcC-CcEEEEccCCC
Q 030686 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~-~~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+....++.|+++|+||+|+.+.. . .++..+++++.+ +.++++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999997 5988887776789999999999986531 1 223345666666 68999999999
Q ss_pred CChHHHHHHHHHHh
Q 030686 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
.|+.++|+.+++..
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998854
No 26
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.3e-35 Score=198.04 Aligned_cols=159 Identities=28% Similarity=0.583 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777666666677799999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++++++.+..|+..+.... ++.|+++|+||+|+.+... ..+..+++...+++++++||++|.|+.++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999987765 4789999999999976432 234456777888899999999999999999999987
Q ss_pred hh
Q 030686 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 27
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-36 Score=198.97 Aligned_cols=161 Identities=32% Similarity=0.549 Sum_probs=150.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.-+||+++|.+++|||-|+.||..+.+.....+|+|+++.+.++.++++.++.++|||+||++|+..+..|++++.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-cc-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|||++.+.+|+.+..|+.+++.+. +++++++|+||+||.+ +. ..++...++...+..++++||..+.|+.++|+.+.
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence 999999999999999999999987 7999999999999987 33 44456789999999999999999999999999988
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
..|.
T Consensus 173 ~~I~ 176 (222)
T KOG0087|consen 173 TEIY 176 (222)
T ss_pred HHHH
Confidence 8764
No 28
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=3.6e-35 Score=202.63 Aligned_cols=161 Identities=32% Similarity=0.572 Sum_probs=143.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||+++|..+.+...+.+|.+.+.....+...+..+.+.+||+||++.+..++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46999999999999999999999888877788898888777777777778899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|||++++++++.+..|+..+....++.|+++|+||+|+.+... . .+...++...++.++++|+++|.|+.++|+++.+
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 9999999999999999999988778899999999999976432 2 3445677788899999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.++
T Consensus 165 ~~~ 167 (199)
T cd04110 165 LVL 167 (199)
T ss_pred HHH
Confidence 775
No 29
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.4e-35 Score=198.15 Aligned_cols=160 Identities=27% Similarity=0.545 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888999998887777777788899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc------CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
|++++++++.+..|+..+.+.. .+.|+++|+||+|+.+ ... ..+...++...+++++++||++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999987764 3689999999999974 322 3334467777889999999999999999999
Q ss_pred HHHHHhhC
Q 030686 166 YLARKLAG 173 (173)
Q Consensus 166 ~i~~~i~~ 173 (173)
+|.+.+++
T Consensus 161 ~l~~~l~~ 168 (168)
T cd04119 161 TLFSSIVD 168 (168)
T ss_pred HHHHHHhC
Confidence 99998874
No 30
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.4e-35 Score=197.38 Aligned_cols=160 Identities=33% Similarity=0.611 Sum_probs=141.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999998888877788888877777777777889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||+++++++..+..|+..+.... ++.|+++++||+|+.... . ..+...++...+++++++||++|.|+.++|+++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999988765 578999999999986532 2 23456778888999999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.7e-35 Score=200.27 Aligned_cols=162 Identities=31% Similarity=0.551 Sum_probs=140.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec----------CcEEEEEEEeCCCcccccCcchh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDG 81 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~G~~~~~~~~~~ 81 (173)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+... +..+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999988888998877766555443 35689999999999999999999
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCC
Q 030686 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
+++++|++++|||+++++++..+..|+..+.... ++.|+++|+||+|+.+. ... .+..+++.+.+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999987653 57899999999999763 323 3456788888999999999999
Q ss_pred CChHHHHHHHHHHhhC
Q 030686 158 YNFEKPFLYLARKLAG 173 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~~ 173 (173)
.|++++|+++.+.+++
T Consensus 163 ~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 163 TNVEKAVERLLDLVMK 178 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987753
No 32
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=3.6e-35 Score=197.48 Aligned_cols=160 Identities=31% Similarity=0.603 Sum_probs=142.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999999888899998887777777777889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++++.+..|+..+.... .+.|+++|+||+|+.+.. . .++...++...+++++++||++|.|++++|+++.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999987764 578999999999997532 2 23445777788899999999999999999999999
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 163 ~~~ 165 (167)
T cd01867 163 DIK 165 (167)
T ss_pred HHH
Confidence 875
No 33
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4e-35 Score=198.39 Aligned_cols=156 Identities=28% Similarity=0.487 Sum_probs=134.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+.+++.+.+...+.++.+. ........++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999998888888763 33445566778899999999999999999999999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHHcC-CcEEEEccCCC
Q 030686 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+....++.|+++|+||+|+.+.. ...+..+++.+.+ +.++++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999996 5888887777789999999999996421 2234456777787 48999999999
Q ss_pred CChHHHHHHHHHH
Q 030686 158 YNFEKPFLYLARK 170 (173)
Q Consensus 158 ~~i~~~~~~i~~~ 170 (173)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 34
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.7e-35 Score=195.84 Aligned_cols=157 Identities=29% Similarity=0.556 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+++++.+.+.+.+.++.+.+.....+..++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888899988877777777777899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++++++.+..|+..+.... .+.|+++|+||.|+.... . ..+...+++..+++|+++||++|.|++++|++|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999887765 378999999999996533 2 344567777788999999999999999999999875
No 35
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=6.2e-35 Score=195.30 Aligned_cols=158 Identities=36% Similarity=0.701 Sum_probs=146.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|++++|||||+++|..+.+...+.++.|.+.....+..++..+.+.+||++|++++..++..+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 95 VTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+++++|++.+..|+..+....+ +.|+++++||.|+.+ +... ++..+++.+++++|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999877 699999999999987 4443 345689999999999999999999999999999987
Q ss_pred h
Q 030686 172 A 172 (173)
Q Consensus 172 ~ 172 (173)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 36
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=5.8e-35 Score=195.39 Aligned_cols=158 Identities=31% Similarity=0.667 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec--CcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+||+++|.+|+|||||++++..+.+...+.++.+.+.....+... +..+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988888888898888766666665 677899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|||++++++++.+..|+..+....++.|+++|+||+|+... ... .+...++...+++++++|++++.|++++|++|..
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999877789999999999999653 333 3445778888999999999999999999999987
Q ss_pred Hh
Q 030686 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.+
T Consensus 161 ~~ 162 (162)
T cd04106 161 KC 162 (162)
T ss_pred hC
Confidence 53
No 37
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.5e-35 Score=203.95 Aligned_cols=159 Identities=23% Similarity=0.415 Sum_probs=137.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||+|+.+|..+.++..+.||.+.... ..+..++..+.+.+|||+|++.|..++..+++++|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999889999876554 5667788889999999999999999999999999999999
Q ss_pred EECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc--------------cccHHHHHHHHHcCC-cEEEEccCC
Q 030686 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (173)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~~~ 156 (173)
||++++++++.+. .|...+...+++.|+++|+||+|+.+. ...++...++++.++ .|++|||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999985 588878777789999999999999642 122345678888885 899999999
Q ss_pred CCC-hHHHHHHHHHHhh
Q 030686 157 NYN-FEKPFLYLARKLA 172 (173)
Q Consensus 157 ~~~-i~~~~~~i~~~i~ 172 (173)
+.+ ++++|+.+...++
T Consensus 160 ~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 160 SERSVRDVFHVATVASL 176 (222)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 985 9999999888654
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=6.9e-35 Score=195.18 Aligned_cols=158 Identities=31% Similarity=0.571 Sum_probs=134.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999998888777777775 33344566677788999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+..|+..+.... ++.|+++|+||+|+.+. ... .+...++..++++++++||++|.|+.++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 57999999999999653 222 234467777788999999999999999999999
Q ss_pred HHh
Q 030686 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 865
No 39
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-36 Score=189.21 Aligned_cols=160 Identities=31% Similarity=0.597 Sum_probs=147.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
-+|++++|+.|+|||+|+.+|..+++......|+|+++....+.+.++.+++++|||+|+++|++..+.|++++.++++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++|+.+..|+...+... +++-+++++||.||.. +++. .+...++.+..+.+.++|+++|+|+.|.|-...+
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 99999999999999999998774 6888999999999976 3443 3556899999999999999999999999988877
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.|+
T Consensus 169 tIl 171 (214)
T KOG0086|consen 169 TIL 171 (214)
T ss_pred HHH
Confidence 664
No 40
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.1e-34 Score=194.50 Aligned_cols=159 Identities=30% Similarity=0.547 Sum_probs=136.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||+++++.+.+...+.++.+... ...+..++..+.+.+|||||++++..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998888777778876554 34566677789999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccc-c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+.+|+..+.... ++.|+++|+||+|+.+... . .+..++++..+++++++||++|.|++++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988887643 6899999999999976432 2 233567777889999999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+++.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 41
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.1e-34 Score=195.51 Aligned_cols=158 Identities=28% Similarity=0.469 Sum_probs=138.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998899999988877777777888999999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhc-C-CCCEEEEEeCCCCccccc----cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 95 VTARLTYKNVPTWHRDLCRVC-E-NIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~-~-~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+++++++..+..|+..+.+.. + +.|+++|+||+|+.+... ..+...++.+.+++++++||++|.|+.++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999886542 3 567999999999865321 2233467777888999999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.++
T Consensus 162 ~~~~ 165 (170)
T cd04108 162 ALTF 165 (170)
T ss_pred HHHH
Confidence 8765
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=198.36 Aligned_cols=161 Identities=27% Similarity=0.539 Sum_probs=138.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++++||+++|.+|+|||||++++..+.+...+.++.+.+. ...+.+++..+.+.+|||||++++..++..+++.+++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4579999999999999999999998888777788877555 345667778889999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+.. .. .+...++...+.+++++||++|.|+.++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999998887653 488999999999986532 22 3345677777889999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+++.+.
T Consensus 162 l~~~l~ 167 (189)
T PTZ00369 162 LVREIR 167 (189)
T ss_pred HHHHHH
Confidence 998764
No 43
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.7e-34 Score=197.83 Aligned_cols=158 Identities=31% Similarity=0.502 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
.||+++|++|+|||||+++|..+.+...+.++.+.... ..+..++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999988888888876543 34555677789999999999999999999999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccccc--------------cHHHHHHHHHcC-CcEEEEccCCC
Q 030686 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+....++.|+++|+||+|+.+... ..+..+++...+ +.++++||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999886 59999888778999999999999965321 122345666665 78999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030686 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.|++++|+++.+.++
T Consensus 160 ~~v~e~f~~l~~~~~ 174 (189)
T cd04134 160 RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998775
No 44
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=3e-34 Score=193.48 Aligned_cols=161 Identities=32% Similarity=0.617 Sum_probs=140.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|++|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45699999999999999999999999888877888888777777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCcccccc-HHHHHHHHHcC-CcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKN-LQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~-~~~~~~S~~~~~~i~~~ 163 (173)
+|||++++++++.+..|...+.... .+.|+++|+||+|+..+... .+..+++.+.+ ..++++||++|.|+.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 9999999999999999988876543 46899999999999764443 34567777777 47999999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
|+++++.+
T Consensus 163 ~~~~~~~~ 170 (170)
T cd04116 163 FEEAVRRV 170 (170)
T ss_pred HHHHHhhC
Confidence 99998764
No 45
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2e-34 Score=201.04 Aligned_cols=159 Identities=30% Similarity=0.509 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC-cEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+||+++|.+|+|||||+++|..+.+...+.+|.+.+.....+..++ ..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999989888899999888777776654 578999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
||++++++++.+..|+..+.+.. .+.|+++|+||+|+.+ +... .+...++..+++.++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999988764 2468999999999964 3333 3445788888899999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+++.+.
T Consensus 161 l~~~l~ 166 (215)
T cd04109 161 LAAELL 166 (215)
T ss_pred HHHHHH
Confidence 998765
No 46
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.4e-34 Score=192.32 Aligned_cols=158 Identities=33% Similarity=0.621 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+++++.+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888877777777777889999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|+++++++..+..|+..+.... ++.|+++++||+|+.... . ..+...++...++.++++||+++.|+.++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999887654 689999999999997532 2 334567788888999999999999999999999886
Q ss_pred h
Q 030686 171 L 171 (173)
Q Consensus 171 i 171 (173)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 4
No 47
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=3.4e-34 Score=192.32 Aligned_cols=159 Identities=33% Similarity=0.596 Sum_probs=140.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999998888777788988888777787787788999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++.++..+..|+..+.+..+ +.|+++|+||+|+... .. .++...++...++.++++||++|.|++++|+++.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999887764 5899999999999753 22 23445677778899999999999999999999988
Q ss_pred Hh
Q 030686 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.+
T Consensus 163 ~i 164 (165)
T cd01868 163 EI 164 (165)
T ss_pred Hh
Confidence 75
No 48
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.8e-34 Score=195.97 Aligned_cols=159 Identities=33% Similarity=0.610 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999888778889888877777777777899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|+++++++..+..|+..+.... .+.|+++++||+|+.+.. .. .....++...+++++++||++|.|++++|+++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999988764 468999999999997533 22 33456777788899999999999999999999987
Q ss_pred hh
Q 030686 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
++
T Consensus 161 ~~ 162 (188)
T cd04125 161 II 162 (188)
T ss_pred HH
Confidence 75
No 49
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=5.2e-34 Score=192.02 Aligned_cols=160 Identities=32% Similarity=0.572 Sum_probs=141.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++....+.+||++|++++..++..+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999998888887788888888777777777788999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|++++++++.+..|+..+.... ++.|+++|+||.|+... .. ..+...++...++.++++||+++.|+.++|+++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999997753 68999999999999742 22 33445677788999999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 164 ~~~ 166 (168)
T cd01866 164 EIY 166 (168)
T ss_pred HHH
Confidence 875
No 50
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.2e-34 Score=191.89 Aligned_cols=160 Identities=33% Similarity=0.608 Sum_probs=138.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999888887778888877777777777777899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCC-cEEEEccCCCCChHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i 167 (173)
|||++++++++.+..|+..+.... ++.|+++|+||+|+.+.. .. .+..++++..++ .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999997753 578999999999997543 22 344567777765 68999999999999999999
Q ss_pred HHHh
Q 030686 168 ARKL 171 (173)
Q Consensus 168 ~~~i 171 (173)
++.+
T Consensus 162 ~~~l 165 (165)
T cd01864 162 ATEL 165 (165)
T ss_pred HHhC
Confidence 8753
No 51
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=4.3e-34 Score=191.45 Aligned_cols=158 Identities=30% Similarity=0.549 Sum_probs=134.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||+++++.+.+...+.++.+ +.....+..++..+.+++||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999988877777765 44445666677788999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+..|+..+.... .+.|+++|+||+|+.... .. .+...++...+++++++||++|.|+.++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 589999999999986532 22 234566667788999999999999999999998
Q ss_pred HHh
Q 030686 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 764
No 52
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=5.2e-34 Score=190.56 Aligned_cols=158 Identities=30% Similarity=0.565 Sum_probs=135.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|++|+|||||++++..+.+...+.++.+... ......++..+.+.+||++|++++..++..+++.++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999998888777778776443 34556677778899999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++++.+..|+..+.+.. .+.|+++|+||+|+.++.... +..+++...+++++++||++|.|++++|+++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999988888887653 588999999999997754433 445677778899999999999999999999987
Q ss_pred Hh
Q 030686 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 64
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.5e-34 Score=195.42 Aligned_cols=158 Identities=30% Similarity=0.473 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+||+++|++|+|||||++++..+.+...+.++.+.+... .+... +..+.+.+|||+|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999888888887766543 34443 6778999999999999999999999999999999
Q ss_pred EECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc------ccHHHHHHHHHcCC-cEEEEccCCCCChHHHH
Q 030686 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (173)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~ 164 (173)
||++++++++.+. .|+..+....++.|+++|+||+|+.... ...+..+++...++ +++++||++|.|+.++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence 9999999999986 4888887766789999999999986532 23345577888887 89999999999999999
Q ss_pred HHHHHHhh
Q 030686 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
+.+.+.++
T Consensus 160 ~~l~~~~~ 167 (187)
T cd04132 160 DTAIEEAL 167 (187)
T ss_pred HHHHHHHH
Confidence 99998765
No 54
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.4e-34 Score=197.82 Aligned_cols=160 Identities=28% Similarity=0.571 Sum_probs=139.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
++||+++|++|+|||||++++..+.+...+.++.+.+.....+.. ++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999998888877888888877666665 4567899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|||++++++++.+.+|+..+.+.. ...|+++|+||+|+.+. .. ..+..++++..++.++++||++|.|+.++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999987654 35678999999999763 22 334557888888999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
++.+.
T Consensus 162 ~~~~~ 166 (211)
T cd04111 162 TQEIY 166 (211)
T ss_pred HHHHH
Confidence 98764
No 55
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.5e-34 Score=195.24 Aligned_cols=159 Identities=29% Similarity=0.600 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+||+++|++|+|||||++++..+.+.. .+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999998887753 5677777777666677777889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|++++++++.+..|+..+.... .+.|+++|+||+|+.. +.. ..+...++..++++++++||++|.|+.++|+++.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998775 4789999999999964 322 33455777788899999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 161 ~~~ 163 (191)
T cd04112 161 ELK 163 (191)
T ss_pred HHH
Confidence 764
No 56
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.2e-33 Score=194.16 Aligned_cols=159 Identities=27% Similarity=0.478 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+||+++|.+|+|||||+++|..+.+.. .+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888864 5788888777666777888889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-----c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
||++++++++.+..|+..+....++.|+++|+||+|+.... . ..+..+++...+++++++||+++.|+.++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999989999988766689999999999985421 1 12345677778899999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 161 i~~~~~ 166 (193)
T cd04118 161 VAEDFV 166 (193)
T ss_pred HHHHHH
Confidence 998764
No 57
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=9.3e-34 Score=197.72 Aligned_cols=161 Identities=32% Similarity=0.549 Sum_probs=142.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||++|++++...+..+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999888877788999988888888888888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|||++++++++.+..|+..+.... .+.|+++|+||+|+.+. ... .....++..++++++++||++|.|++++|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999988765 47999999999998653 233 344567777899999999999999999999998
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 171 ~~i~ 174 (216)
T PLN03110 171 LEIY 174 (216)
T ss_pred HHHH
Confidence 8764
No 58
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.8e-34 Score=195.72 Aligned_cols=157 Identities=32% Similarity=0.545 Sum_probs=133.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|.+|+|||||+++|..+.+...+.++.+... ......++..+.+.+|||+|++++..++..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999998888777778876443 3345566777899999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 95 VTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++++++++.+..|+..+.... ++.|+++|+||+|+.+. ... .+..+++...++.++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988886643 47899999999999652 222 234567777889999999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 160 ~~l~ 163 (190)
T cd04144 160 RALR 163 (190)
T ss_pred HHHH
Confidence 8764
No 59
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.4e-33 Score=190.81 Aligned_cols=157 Identities=29% Similarity=0.482 Sum_probs=134.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEEC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 95 (173)
|+++|.+|+|||||++++..+.+...+.++.+... ...+..++..+.+.+|||||++.+..++..+++++|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777775443 34556677788999999999999999999999999999999999
Q ss_pred CChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHHcCC-cEEEEccCCCCC
Q 030686 96 TARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISAKSNYN 159 (173)
Q Consensus 96 ~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S~~~~~~ 159 (173)
+++++++.+. .|+..+....++.|+++|+||+|+.... ...+..++++..+. .++++||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999986 5999998877899999999999986521 12234467888876 899999999999
Q ss_pred hHHHHHHHHHHhhC
Q 030686 160 FEKPFLYLARKLAG 173 (173)
Q Consensus 160 i~~~~~~i~~~i~~ 173 (173)
++++|+.+.+.+++
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988753
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.4e-33 Score=189.47 Aligned_cols=155 Identities=28% Similarity=0.456 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+++++.+.+...+.++.+.+. ..........+.+.+||++|++++..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777776444 334455667789999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCcc-ccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|++++++++.+..|+..+.... ++.|+++|+||+|+.+ +.... +...++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999888776642 5799999999999976 33333 3456777788999999999999999999999
Q ss_pred HH
Q 030686 168 AR 169 (173)
Q Consensus 168 ~~ 169 (173)
.+
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 61
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.1e-33 Score=189.41 Aligned_cols=159 Identities=31% Similarity=0.592 Sum_probs=139.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-CcchhhccCCCEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII 91 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~i~ 91 (173)
.+||+++|++|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999998888888888888877778888888999999999999886 578889999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCC---CCChHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKS---NYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~---~~~i~~~~ 164 (173)
|||++++++++.+..|+..+.... .+.|+++|+||+|+.... .. ....+++...+++++++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887764 579999999999997533 33 344577788889999999999 89999999
Q ss_pred HHHHHHh
Q 030686 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998865
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2.4e-33 Score=187.85 Aligned_cols=158 Identities=32% Similarity=0.562 Sum_probs=133.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||+++++.+.+...+.++.+... ......++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999998887766677765333 33455667778999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+..|+..+.... .+.|+++++||+|+.+.. .. .+..+++...+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988887652 578999999999997643 22 344567777789999999999999999999998
Q ss_pred HHh
Q 030686 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 63
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=2.1e-33 Score=188.08 Aligned_cols=159 Identities=35% Similarity=0.703 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+.....++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999888887777788888777777777777789999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++.+++.+..|+..+.... ++.|+++++||+|+.. .... +...+++...+++++++|++++.|+.++++++.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987765 6899999999999876 3323 34556777888999999999999999999999998
Q ss_pred hh
Q 030686 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
+.
T Consensus 161 ~~ 162 (164)
T smart00175 161 IL 162 (164)
T ss_pred Hh
Confidence 75
No 64
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=182.59 Aligned_cols=159 Identities=35% Similarity=0.625 Sum_probs=143.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
-+||+++|..|+|||+|+++|..+-+++....|+|+++...++.++++.+++++|||+|+++|+++++.|++.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-cccHHH-HHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++..++|+-+..|+.++.++.. .+--++|+||+|+.++ ++++.. .++......-|+++||+.-+|++.+|..++-
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 999999999999999999999863 4446899999999875 444443 4677666677889999999999999998876
Q ss_pred Hh
Q 030686 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.+
T Consensus 167 rl 168 (213)
T KOG0095|consen 167 RL 168 (213)
T ss_pred HH
Confidence 54
No 65
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=2.5e-33 Score=187.87 Aligned_cols=158 Identities=27% Similarity=0.542 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC--CcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
+||+++|++|+|||||++++..+ .+...+.++.|.+........+ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999998754 5777888888888766666554 56799999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|||+++++++..+..|+..+....++.|+++|+||+|+.+.. ... ....+....+++++++||+++.|+.++|+.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 9999999999999999999988776679999999999996543 232 23455666788999999999999999999999
Q ss_pred HHh
Q 030686 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 875
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.1e-33 Score=188.27 Aligned_cols=158 Identities=30% Similarity=0.564 Sum_probs=134.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+ +........++..+.+.+||+||++++..++..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998888777777765 333445566777899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|++++++++.+..|...+.... .+.|+++|+||+|+.+. ... .....++...+.+++++||++|.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999888876653 47899999999999763 223 3345677788899999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 764
No 67
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.7e-33 Score=195.88 Aligned_cols=154 Identities=29% Similarity=0.483 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+++|+.+.+.. +.++.+.+...... ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988865 46777766544333 4678999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCcc--------------------ccc-cHHHHHHHHHcC-----
Q 030686 94 DVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN--------------------RQV-KAKQVTFHRKKN----- 146 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~--------------------~~~-~~~~~~~~~~~~----- 146 (173)
|++++++++.+..|+..+.+. .++.|+++|+||+|+.+ +.+ .++...++.+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999998877776654 35789999999999864 222 234457777765
Q ss_pred ---------CcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 147 ---------LQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 147 ---------~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++|+++||++|.|++++|+.+++.++
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998765
No 68
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.6e-33 Score=192.24 Aligned_cols=156 Identities=21% Similarity=0.394 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhhC-----CcccccccceeE-EEEEEE--------EEecCcEEEEEEEeCCCcccccC
Q 030686 13 SFKLVIVGDGGTGKTTFVK-RHLTG-----EFEKKYEPTIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~-~l~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
.+||+++|.+|+|||||+. ++..+ .+...+.||.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 54433 344566778752 322222 14567889999999999975 3
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcc--------------------ccc-c
Q 030686 78 LRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQV-K 135 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~--------------------~~~-~ 135 (173)
....+++++|++++|||++++.|++.+. .|+..+....++.|+++|+||+|+.+ +.+ .
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 5566899999999999999999999997 59999887777899999999999863 222 3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 136 AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
++..+++++.+++|++|||++|.|++++|+.++++
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 35568999999999999999999999999999875
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.7e-33 Score=186.85 Aligned_cols=159 Identities=34% Similarity=0.608 Sum_probs=139.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998888776788888777777778888889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-cc-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|+++++++..+..|+..+.... ++.|+++++||+|+.. .. ...+...++...++.++++||++|.|+.++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987765 6789999999999874 22 233445677778899999999999999999999998
Q ss_pred Hh
Q 030686 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 70
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=6e-33 Score=185.48 Aligned_cols=158 Identities=35% Similarity=0.631 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+.....++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988877767888888777666667777889999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++++++.+..|+..+.... ++.|+++|+||+|+..... ..+...++...+++++++|+++|.|+.++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999999887764 5899999999999975443 344567888889999999999999999999999875
Q ss_pred h
Q 030686 171 L 171 (173)
Q Consensus 171 i 171 (173)
+
T Consensus 161 ~ 161 (161)
T cd01863 161 I 161 (161)
T ss_pred C
Confidence 3
No 71
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3.7e-33 Score=193.99 Aligned_cols=160 Identities=33% Similarity=0.565 Sum_probs=141.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999998888877888888888777777777888999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++++.+..|+..+.... ++.|+++++||+|+.+.. . ..+..+++..++++++++||+++.|++++|+++++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999988876654 579999999999997632 2 33456788888999999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.++
T Consensus 166 ~~~ 168 (210)
T PLN03108 166 KIY 168 (210)
T ss_pred HHH
Confidence 764
No 72
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=4.9e-33 Score=185.88 Aligned_cols=158 Identities=32% Similarity=0.576 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+++++...+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988887777888887777777777777789999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++++++.+..|+..+.... .+.|+++++||+|+.+ +.... +...++...++.++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999999999999887654 3699999999999944 33333 3456777778999999999999999999999875
Q ss_pred h
Q 030686 171 L 171 (173)
Q Consensus 171 i 171 (173)
+
T Consensus 161 l 161 (161)
T cd01861 161 L 161 (161)
T ss_pred C
Confidence 3
No 73
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=6.8e-33 Score=187.03 Aligned_cols=159 Identities=31% Similarity=0.631 Sum_probs=136.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+.+.........+..+.+.+||+||++.+..++..+++++|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777788887776666777778889999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcC-----CCCEEEEEeCCCCcc-cc-ccHHHHHHHHHcC-CcEEEEccCCCCChHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~-~~-~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~ 165 (173)
|++++++++.+..|...+..... +.|+++|+||+|+.. .. ...+...++...+ .+++++|+++|.|+.++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888887766543 799999999999974 22 2334456666666 7999999999999999999
Q ss_pred HHHHHhh
Q 030686 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
++.+.++
T Consensus 161 ~i~~~~~ 167 (172)
T cd01862 161 TIARKAL 167 (172)
T ss_pred HHHHHHH
Confidence 9998765
No 74
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.5e-32 Score=191.66 Aligned_cols=164 Identities=82% Similarity=1.404 Sum_probs=147.4
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+...+||+++|++|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|++++...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34567999999999999999999888888888889999998888877778888999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+++|||++++.++..+..|+..+....++.|+++++||+|+.++....+...++...++.++++|+++|.|+++.|.+++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999998877778999999999999776555555677778889999999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.++
T Consensus 165 ~~l~ 168 (215)
T PTZ00132 165 RRLT 168 (215)
T ss_pred HHHh
Confidence 8875
No 75
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=7.8e-33 Score=187.14 Aligned_cols=155 Identities=26% Similarity=0.456 Sum_probs=131.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+|++++|++|+|||||+.++..+.+...+.++. .+........++..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999888888877776 3444556677777899999999999999999999999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-------------ccc-HHHHHHHHHcCC-cEEEEccCCC
Q 030686 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~~-~~~~~~~~~~~~-~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+....++.|+++++||+|+... ... ++...+++..+. .++++||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999999885 588888776678999999999998642 122 234567777777 8999999999
Q ss_pred CChHHHHHHHHH
Q 030686 158 YNFEKPFLYLAR 169 (173)
Q Consensus 158 ~~i~~~~~~i~~ 169 (173)
.|++++|+.++-
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999998764
No 76
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.7e-33 Score=190.47 Aligned_cols=157 Identities=22% Similarity=0.297 Sum_probs=125.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.++||||||++++..+.+. .+.||.|.+..... ...+.+.+||+||+++++.+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~----~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999998877765 45788876654332 35689999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhh--hcCCCCEEEEEeCCCCccccccHHHHHHHHHcC-----CcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 163 (173)
+|+|+++++++..+..++..+.. ..++.|+++++||+|+.++....+......... +.++++||++|+|+.++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 99999999999888877766643 236899999999999987654333333222221 23568999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|++|++.++
T Consensus 170 ~~~l~~~~~ 178 (181)
T PLN00223 170 LDWLSNNIA 178 (181)
T ss_pred HHHHHHHHh
Confidence 999999875
No 77
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=183.11 Aligned_cols=172 Identities=28% Similarity=0.471 Sum_probs=150.8
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030686 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|.++....-+.-.+|++++|..-+|||+|+-++..++|...+.+|....+....+.+++....+.+|||+|+++|..+-+
T Consensus 1 ~~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP 80 (218)
T KOG0088|consen 1 MMLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP 80 (218)
T ss_pred CCccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc
Confidence 44444455555679999999999999999999999999999888887778778888888889999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCC
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
.|+++++++++|||++++.||+.++.|..+++.... .+.+++|+||+||... .+ ..+....+..-+..|+++||+.+
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N 160 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN 160 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence 999999999999999999999999999999998764 4668999999999763 33 34556788889999999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030686 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.||.|+|+.+....+
T Consensus 161 ~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 161 VGISELFESLTAKMI 175 (218)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999987664
No 78
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.4e-32 Score=189.24 Aligned_cols=159 Identities=21% Similarity=0.305 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhhccC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~~~ 85 (173)
+||+++|.+|+|||||+++++.+.+...+.|+.+.+.....+..++..+.+.+|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999888878888776665555666777899999999997654321 2334789
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhh----cCCCCEEEEEeCCCCcccc-ccHH-HHHHH-HHcCCcEEEEccCCCC
Q 030686 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQ-VKAK-QVTFH-RKKNLQYYEISAKSNY 158 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~-~~~~-~~~~~-~~~~~~~~~~S~~~~~ 158 (173)
+|++++|||++++++++.+..|+..+... .++.|+++|+||+|+.... ...+ ...++ +..+++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 99999999999999999999998888765 2579999999999996532 2222 33444 3568999999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030686 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++|+.+++.++
T Consensus 161 ~v~~lf~~i~~~~~ 174 (198)
T cd04142 161 HILLLFKELLISAT 174 (198)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998764
No 79
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1.8e-32 Score=185.46 Aligned_cols=158 Identities=25% Similarity=0.388 Sum_probs=132.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+. .....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999998887777777653 33345666777889999999999999999999999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcCC-cEEEEccCCC
Q 030686 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+....++.|+++++||+|+.+.. . ..+...+++..++ .++++||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999886 5888887666789999999999986431 1 2234466777775 7999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030686 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.|++++|+.+++.++
T Consensus 160 ~gi~~~f~~~~~~~~ 174 (174)
T cd04135 160 KGLKTVFDEAILAIL 174 (174)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998764
No 80
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=189.79 Aligned_cols=160 Identities=31% Similarity=0.567 Sum_probs=135.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|.+|+|||||+++|+.+.+. .+.++.+.+.....+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4699999999999999999998887764 567888887777777777778899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHH-HHHHHhhhc--CCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 92 MFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|||++++++++.+.. |...+.... .+.|+++|+||+|+..... ..+...++...++.++++||+++.|++++|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 171 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE 171 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999876 655555432 4679999999999975332 23445677788899999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 172 l~~~~~ 177 (211)
T PLN03118 172 LALKIM 177 (211)
T ss_pred HHHHHH
Confidence 998765
No 81
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.9e-34 Score=181.30 Aligned_cols=161 Identities=27% Similarity=0.550 Sum_probs=142.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
-+++++++|.+-+|||+|++.|..+++.+-..||.|+++...-+.. ++..+++++|||+|+++|+++++.|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 4689999999999999999999999999999999999987765554 467899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCC-EEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p-~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+|||+++++||+.+..|+.+-..+. |.++ +++|++|+||.. +++. ++...++..++..|+++|+++|.|++|.|.
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence 9999999999999999998876654 5555 578999999976 4444 455689999999999999999999999999
Q ss_pred HHHHHhh
Q 030686 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
.+.+.+.
T Consensus 167 mlaqeIf 173 (213)
T KOG0091|consen 167 MLAQEIF 173 (213)
T ss_pred HHHHHHH
Confidence 9998764
No 82
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=3e-33 Score=188.22 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=123.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+. .+.+|.|.+..... ...+.+.+||+||+++++..+..+++++|+++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999998777664 35677776654332 25688999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|||++++.++..+..|+..+... .++.|+++|+||+|+.+....++..++.. .....++++||++|.|+.++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 999999999998888777666442 36799999999999976433333333332 12346899999999999999
Q ss_pred HHHHHH
Q 030686 164 FLYLAR 169 (173)
Q Consensus 164 ~~~i~~ 169 (173)
|++|.+
T Consensus 162 ~~~l~~ 167 (168)
T cd04149 162 LTWLSS 167 (168)
T ss_pred HHHHhc
Confidence 999975
No 83
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=3.1e-32 Score=181.98 Aligned_cols=159 Identities=31% Similarity=0.562 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+.+.........+..+.+.+||+||++.+..++..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988877666666655655556666667789999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++++++.+..|+..+....+ +.|+++++||+|+... ... .+..+.+...+++++++|++++.|+.++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998877653 7899999999999753 222 33446777788999999999999999999999987
Q ss_pred hh
Q 030686 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
++
T Consensus 161 ~~ 162 (162)
T cd04123 161 MI 162 (162)
T ss_pred hC
Confidence 63
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=3.1e-32 Score=183.35 Aligned_cols=159 Identities=27% Similarity=0.533 Sum_probs=134.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++++..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 47999999999999999999998888777777776443 45556677778999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcC-CcEEEEccCCCCChHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|++++++++....|...+.+.. .+.|+++++||.|+.... . ..+...+++..+ ++++++||+++.|+.++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988887642 589999999999996532 2 233446666766 789999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
+.+++
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98764
No 85
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=9.1e-33 Score=187.07 Aligned_cols=157 Identities=24% Similarity=0.327 Sum_probs=124.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|.+|+|||||++++..+.+. .+.||.+.+...... ..+.+.+||+||+++++..+..+++++|+++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTY----KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999998777764 456777766543332 5688999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|++++++++....|+..+... .++.|+++|+||+|+.+.....+..+... ...+.++++||++|.|+.++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 999999999999888877776432 35789999999999976433233222221 12335678999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+||.+.+.
T Consensus 166 ~~~l~~~~~ 174 (175)
T smart00177 166 LTWLSNNLK 174 (175)
T ss_pred HHHHHHHhc
Confidence 999988764
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.7e-32 Score=183.78 Aligned_cols=160 Identities=19% Similarity=0.233 Sum_probs=135.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
+.+||+++|.+|+|||||+++++.+.+. ..+.+|.+.......+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4689999999999999999999999887 778888887776666777777789999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCC-cEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++++++.+..|+..+... .+.|+++|+||+|+.+.. . ..+..+++...++ .++++||+++.|++++|+.+
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 161 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKL 161 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHH
Confidence 999999999999888888766432 479999999999996432 1 2234566777776 46999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
++.++
T Consensus 162 ~~~~~ 166 (169)
T cd01892 162 ATAAQ 166 (169)
T ss_pred HHHhh
Confidence 98764
No 87
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=2.9e-32 Score=181.62 Aligned_cols=151 Identities=23% Similarity=0.370 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+.+++.+.+.+.+.++.+ .. ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999998888766555533 33 34566777788999999999975 34678899999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc---ccccH-HHHHHHHHc-CCcEEEEccCCCCChHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~---~~~~~-~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|+++++||+.+..|+..+.... ++.|+++|+||+|+.. +.... +..+++++. ++.|++|||++|.|++++|+.
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999997764 5789999999999842 33333 334677665 589999999999999999999
Q ss_pred HHHHh
Q 030686 167 LARKL 171 (173)
Q Consensus 167 i~~~i 171 (173)
+++.+
T Consensus 154 ~~~~~ 158 (158)
T cd04103 154 AAQKI 158 (158)
T ss_pred HHhhC
Confidence 98753
No 88
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=2.7e-32 Score=183.84 Aligned_cols=153 Identities=23% Similarity=0.362 Sum_probs=123.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|.+++|||||++++..+.+.. +.+|.+....... ...+.+.+||+||+++++..+..+++++|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~~----~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETVE----YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEEE----ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999988776544 6777765554322 256899999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHHcC------CcEEEEccCCCCChHHHHHH
Q 030686 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~~~ 166 (173)
+++++++..+..|+..+... ..+.|+++|+||+|+.++....+..+++...+ ..++++||++|.|++++|++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999999998888887643 24689999999999976544444444443222 25789999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|++.++
T Consensus 156 l~~~~~ 161 (169)
T cd04158 156 LSRQLV 161 (169)
T ss_pred HHHHHh
Confidence 998765
No 89
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=5.4e-32 Score=179.86 Aligned_cols=156 Identities=36% Similarity=0.712 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++++|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888877888888888888888778899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCc--cccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|+++++++..+..|+..+.... ++.|+++++||+|+. ......+...++...+++++++|++++.|+.+++++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999988875 679999999999995 333444555777778999999999999999999999863
No 90
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=4.1e-32 Score=182.25 Aligned_cols=157 Identities=22% Similarity=0.385 Sum_probs=129.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc-ccCcchhhccCCCEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i~v~ 93 (173)
||+++|++|+|||||+++++.+.+...+.++.+... ......++..+.+.+||+||++. ....+..+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998887766666664333 34556677788999999999985 3456777899999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCC-CChHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN-YNFEKPFLYL 167 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~-~~i~~~~~~i 167 (173)
|++++++++.+..|+..+.... .+.|+++|+||+|+... ... .+..+++...+++++++||+++ .|+.++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887653 48999999999998653 223 3445778888899999999999 5999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 91
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=4.3e-32 Score=192.15 Aligned_cols=157 Identities=29% Similarity=0.507 Sum_probs=131.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+++++.+.+...+.+|.+ +.....+.+++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998887788876 444556677778899999999999999888888899999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh----------cCCCCEEEEEeCCCCcc-ccccH-HHHHHHHH-cCCcEEEEccCCCCCh
Q 030686 94 DVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRK-KNLQYYEISAKSNYNF 160 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----------~~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~-~~~~~~~~S~~~~~~i 160 (173)
|++++++|+.+..|+..+... ..+.|+++|+||+|+.. +.... +..+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999888888643 24789999999999975 33332 33344443 4678999999999999
Q ss_pred HHHHHHHHHHh
Q 030686 161 EKPFLYLARKL 171 (173)
Q Consensus 161 ~~~~~~i~~~i 171 (173)
+++|++|.+..
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=1.1e-31 Score=181.76 Aligned_cols=157 Identities=31% Similarity=0.512 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
.||+++|++|+|||||++++..+.+...+.++.+.... ..+..++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 68999999999999999999998888778888765443 34566777889999999999999988888999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccccc--------------cHHHHHHHHHcC-CcEEEEccCCC
Q 030686 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+.+..++.|+++|+||+|+.+... ..+..+++...+ .+++++||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 999999998886 58888877667999999999999865321 123345555555 47999999999
Q ss_pred CChHHHHHHHHHHh
Q 030686 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
.|++++|+++.+..
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 93
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=2.8e-32 Score=182.02 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+++|||||++++..+.+. .+.|+.|.+...... ..+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999998777776 467787766543322 5688999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|++++.+++.+..|+..+... ..+.|+++++||+|+.+.....+...... .....++++||++|.|++++|++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 999999999888877666432 24689999999999976433222222221 12345779999999999999999
Q ss_pred HHH
Q 030686 167 LAR 169 (173)
Q Consensus 167 i~~ 169 (173)
|.+
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 864
No 94
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=3.6e-32 Score=185.15 Aligned_cols=157 Identities=20% Similarity=0.310 Sum_probs=123.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|++|+|||||++++..+.+.. +.+|.+.+..... ...+.+.+||+||+++++.++..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVE----YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346999999999999999999987777754 5677776654332 25689999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|+++++++.....++..+... ..+.|+++|+||.|+.+.....+...... ...+.++++||++|.|++++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 999999999999888766666432 35789999999999976433232222111 12234678999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|++|.+.+.
T Consensus 170 ~~~l~~~i~ 178 (182)
T PTZ00133 170 LDWLSANIK 178 (182)
T ss_pred HHHHHHHHH
Confidence 999998765
No 95
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=1.5e-31 Score=187.08 Aligned_cols=157 Identities=20% Similarity=0.336 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhcc-CCCEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAII 91 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-~~~~~i~ 91 (173)
+||+++|.+|+|||||+++|..+.+. ..+.++.+.+.....+.+++....+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999998888875 5666776656666677777788999999999998 233445666 8999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .... +..+++...++.++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887753 57999999999999653 2322 3456777788999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 159 ~~~~~ 163 (221)
T cd04148 159 VRQIR 163 (221)
T ss_pred HHHHH
Confidence 98763
No 96
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.7e-31 Score=177.62 Aligned_cols=161 Identities=34% Similarity=0.609 Sum_probs=136.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||++++..+.+.+.+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999988888777777888877777677777778899999999999999988999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccccHH-HHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|||++++++++.+..|+..+.... .+.|+++|+||+|+.+ +....+ ...+.......++++|+++|.|++++|+++.
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999989998887765 3789999999999975 333333 3355555668899999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.++
T Consensus 166 ~~~~ 169 (169)
T cd04114 166 CRLI 169 (169)
T ss_pred HHhC
Confidence 8653
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=1.1e-31 Score=182.94 Aligned_cols=160 Identities=21% Similarity=0.277 Sum_probs=128.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
+.+||+++|.+|+|||||++++..+.+... .++.|.+........ ++..+.+.+|||||++++...|..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999988776543 677776666555544 346789999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHHHHHHH------cCCcEEEEccCCCCChHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK------KNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~i~~ 162 (173)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+.....+...+... .++.++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 9999999998888888887776543 47999999999999754333333333221 124688999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
++++|.+.+.
T Consensus 161 l~~~l~~~l~ 170 (183)
T cd04152 161 GLEKLYEMIL 170 (183)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 98
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=180.29 Aligned_cols=160 Identities=33% Similarity=0.605 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec---------CcEEEEEEEeCCCcccccCcchhhcc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGYYI 84 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~G~~~~~~~~~~~~~ 84 (173)
+|.+.+|.+|+|||+++.++..+++.....+|.|+++.+..+.+. +..+.+++|||+|+++|++++.+|++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 688899999999999999999999999999999999988776542 23588999999999999999999999
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccc-cHH-HHHHHHHcCCcEEEEccCCCCCh
Q 030686 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.+-++++++|+++..||-++.+|+.++..+ +.+--+++++||+||.+... .++ ..+++.+++++||++||-+|.|+
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV 169 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence 999999999999999999999999999765 56777999999999988444 333 45899999999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 030686 161 EKPFLYLARKLAG 173 (173)
Q Consensus 161 ~~~~~~i~~~i~~ 173 (173)
.+..+.+...+|+
T Consensus 170 ~kave~LldlvM~ 182 (219)
T KOG0081|consen 170 EKAVELLLDLVMK 182 (219)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888763
No 99
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=1e-31 Score=181.65 Aligned_cols=156 Identities=18% Similarity=0.326 Sum_probs=123.7
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.....+||+++|++|+|||||++++....+ ..+.++.|........ ..+.+.+||+||++.++..+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEY----EGYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 345679999999999999999999876643 4556777654443333 35789999999999988899999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~ 161 (173)
+++|+|++++.++.....|+..+... ..+.|+++|+||+|+.+.....+...+.. ..+++++++||++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 99999999999998888777776542 36899999999999976543333333332 345689999999999999
Q ss_pred HHHHHHHH
Q 030686 162 KPFLYLAR 169 (173)
Q Consensus 162 ~~~~~i~~ 169 (173)
++|++++.
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 100
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=4.8e-31 Score=176.56 Aligned_cols=158 Identities=30% Similarity=0.572 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999998888777677665333 344566677889999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc-cc-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|++++.++..+..|+..+.... .+.|+++|+||+|+.. +. ...+...++...+++++++|++++.|+.++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999888887763 5899999999999976 22 233344667777899999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=4.7e-32 Score=181.77 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=125.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEEC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 95 (173)
|+++|++|+|||||++++..+.+...+.||.|.... .++...+.+.+||+||+++++..+..+++++|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~----~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV----AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE----EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 789999999999999999988887778888876532 2344678999999999999999999999999999999999
Q ss_pred CChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH------HHHHHHHcCCcEEEEccCC------CCChHHH
Q 030686 96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKS------NYNFEKP 163 (173)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~S~~~------~~~i~~~ 163 (173)
+++.++...+.|+..+....+++|+++|+||+|+.......+ ...++.+.++.++++||++ ++|++++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 999999998888888865557899999999999976433222 2345566678889988888 9999999
Q ss_pred HHHHHH
Q 030686 164 FLYLAR 169 (173)
Q Consensus 164 ~~~i~~ 169 (173)
|+.++.
T Consensus 158 ~~~~~~ 163 (164)
T cd04162 158 LSQLIN 163 (164)
T ss_pred HHHHhc
Confidence 998764
No 102
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=7.9e-31 Score=179.37 Aligned_cols=159 Identities=31% Similarity=0.490 Sum_probs=131.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+.||+++|++|+|||||++++..+.+.+.+.++.+.... ..+..++..+.+.+||++|++.+......+++++++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 368999999999999999998888887766666544432 3455566778899999999998887777788999999999
Q ss_pred EECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-----------c-cHHHHHHHHHcCC-cEEEEccCCCC
Q 030686 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------V-KAKQVTFHRKKNL-QYYEISAKSNY 158 (173)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~-~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (173)
||++++++++.+. .|+..+....++.|+++|+||+|+.+.. . ..+...+++..++ .++++||++|.
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 9999999999987 5999998777889999999999985421 1 2234467777774 89999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030686 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++|+++.+.++
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998765
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=7.3e-31 Score=176.94 Aligned_cols=155 Identities=30% Similarity=0.524 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+++|..+.+...+.++.. +.........+..+.+++||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999998888666666654 333345566677889999999999998888888899999999999
Q ss_pred ECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCccccc-------------cHHHHHHHHHcCC-cEEEEccCCCC
Q 030686 94 DVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNY 158 (173)
Q Consensus 94 d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (173)
|+++++++..... |+..+....++.|+++|+||+|+.+... ..+..+++...+. +++++|+++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999887764 7888877767899999999999876442 2234466677776 99999999999
Q ss_pred ChHHHHHHHHH
Q 030686 159 NFEKPFLYLAR 169 (173)
Q Consensus 159 ~i~~~~~~i~~ 169 (173)
|+.++++++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6.6e-31 Score=176.59 Aligned_cols=158 Identities=18% Similarity=0.300 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||++++..+.+...+..+.. . ........+..+.+.+||+||++.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999998888655433322 1 2233445567789999999999988888888889999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccccc----HHHHHHHHHc-C-CcEEEEccCCCCChHHHHHH
Q 030686 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK-N-LQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~-~-~~~~~~S~~~~~~i~~~~~~ 166 (173)
|++++.+++.+. .|+..+....++.|+++|+||+|+.+.... .+...++.+. . ..++++||+++.|++++|+.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 999999999975 588888776678999999999999764432 1222333333 2 37999999999999999999
Q ss_pred HHHHhhC
Q 030686 167 LARKLAG 173 (173)
Q Consensus 167 i~~~i~~ 173 (173)
+.+.+.|
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9988765
No 105
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.98 E-value=1.8e-31 Score=178.39 Aligned_cols=151 Identities=24% Similarity=0.389 Sum_probs=119.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC-cccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+|+++|.+|+|||||++++..+. ....+.++.|.+..... ...+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFE----KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEE----ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999988765 35566778776544322 35688999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh----cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|++++.++.....|+..+... ..++|+++|+||+|+.+.....+...... .....++++||++|.|++++|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 999999988888887776543 14799999999999976433222222211 123458999999999999999
Q ss_pred HHHHH
Q 030686 165 LYLAR 169 (173)
Q Consensus 165 ~~i~~ 169 (173)
++|.+
T Consensus 157 ~~l~~ 161 (162)
T cd04157 157 QWLQA 161 (162)
T ss_pred HHHhc
Confidence 99875
No 106
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.98 E-value=9.4e-31 Score=177.04 Aligned_cols=156 Identities=24% Similarity=0.429 Sum_probs=129.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|..||||||+++++..+... ...||.|.+...+.+ .++.+.+||++|+..++..|..|+.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence 56899999999999999999998766544 367888877766665 6688999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH------HcCCcEEEEccCCCCChHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~S~~~~~~i~~ 162 (173)
||+|.++++.+......+..+... ..++|+++++||+|+.+.....+...... ...+.++.+|+.+|+|+.|
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 999999998888888777776553 35899999999999987554444433222 2345689999999999999
Q ss_pred HHHHHHHHh
Q 030686 163 PFLYLARKL 171 (173)
Q Consensus 163 ~~~~i~~~i 171 (173)
.++||.++|
T Consensus 167 ~l~WL~~~~ 175 (175)
T PF00025_consen 167 GLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999875
No 107
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-31 Score=165.33 Aligned_cols=162 Identities=34% Similarity=0.546 Sum_probs=145.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
-.--+|.+++|.-|+|||+|+.+|...++-...+.++|+++....+.+.+..+++++|||.|+++|+..++.|++++.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 34468999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++|||++.++.+..+..|+..-+.. .|+..+++++||.|+.. +.+ -++..+++.+.++.|+++|+++|.++.+.|-.
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence 9999999999999999999887765 37888999999999986 333 34556899999999999999999999999877
Q ss_pred HHHHh
Q 030686 167 LARKL 171 (173)
Q Consensus 167 i~~~i 171 (173)
.++++
T Consensus 168 ~akki 172 (215)
T KOG0097|consen 168 TAKKI 172 (215)
T ss_pred HHHHH
Confidence 77665
No 108
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.9e-30 Score=172.95 Aligned_cols=156 Identities=33% Similarity=0.593 Sum_probs=132.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|++|+|||||+++++.+.+...+.++.+ +........++..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999988777777777765 4444555566667899999999999998999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 95 VTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
+++++++..+..|...+..... ..|+++++||+|+.. .... .+..+++...+++++++|++++.|+++++++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999988888877654 899999999999976 3222 34456777778899999999999999999999876
Q ss_pred h
Q 030686 171 L 171 (173)
Q Consensus 171 i 171 (173)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 4
No 109
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.97 E-value=1.3e-30 Score=176.44 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=121.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.+||+++|++|+|||||++++..+.+.. ..++.+.+...... ....+.+||+||++++...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVY----KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEE----CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999988877664 46777766543332 46889999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+|+++++++.....++..+... ..+.|+++++||+|+.+.....+..+.. ...++.++++||++|.|++++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence 99999999888887766666443 2579999999999997643222222211 2344678999999999999999
Q ss_pred HHHHH
Q 030686 165 LYLAR 169 (173)
Q Consensus 165 ~~i~~ 169 (173)
++|.+
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99975
No 110
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=2.1e-30 Score=177.14 Aligned_cols=159 Identities=32% Similarity=0.584 Sum_probs=143.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+|++++|.+|+|||+|+.+|+.+.+...+.||.+ +.+.....+++..+.+.++||+|++++..+...++..++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 6677788888999999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc-ccccHH-HHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
||+++++.||+.+..++..+.+.. .++|+++||||+|+.. +.+..+ ...++..++++|+++||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999984432 4789999999999987 555444 468899999999999999999999999999
Q ss_pred HHHh
Q 030686 168 ARKL 171 (173)
Q Consensus 168 ~~~i 171 (173)
.+.+
T Consensus 161 ~r~~ 164 (196)
T KOG0395|consen 161 VREI 164 (196)
T ss_pred HHHH
Confidence 8864
No 111
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=5.2e-30 Score=176.78 Aligned_cols=156 Identities=28% Similarity=0.412 Sum_probs=128.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|.+|+|||||+++++.+.+...+.++.+ +.....+...+..+.+.+||+||+..+..++..++..+|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666664 3444456666777899999999999999888999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc--cccH-HHHHHH-HHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKA-KQVTFH-RKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~--~~~~-~~~~~~-~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++++++++.+..|+..+.... .++|+++|+||+|+... .... ...+.. ...+..++++||++|.|+.++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988887654 47999999999998652 2222 122222 24467899999999999999999999
Q ss_pred HHh
Q 030686 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 160 ~~~ 162 (198)
T cd04147 160 RQA 162 (198)
T ss_pred HHh
Confidence 865
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=3.4e-30 Score=177.18 Aligned_cols=146 Identities=19% Similarity=0.312 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-----CcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
+||+++|.+++|||||++++..+.+...+.+|.|.+.....+.++ +..+.+.+||++|++++..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888999877766666553 467899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhh--------------------cCCCCEEEEEeCCCCcccc-ccH-----HHHHHH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRV--------------------CENIPIVLCGNKVDVKNRQ-VKA-----KQVTFH 142 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~p~ivv~nK~Dl~~~~-~~~-----~~~~~~ 142 (173)
+|+|||+++++|++.+..|+..+... .+++|+++|+||+|+.++. ... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999998653 1368999999999996532 222 233677
Q ss_pred HHcCCcEEEEccCCCCC
Q 030686 143 RKKNLQYYEISAKSNYN 159 (173)
Q Consensus 143 ~~~~~~~~~~S~~~~~~ 159 (173)
.+.+++.++.+|.++..
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 88999999999986653
No 113
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=7.6e-30 Score=173.51 Aligned_cols=158 Identities=26% Similarity=0.396 Sum_probs=130.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
.||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887666666664333 234455666788999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-ccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|+++..+++.+..|+..+.... .+.|+++++||+|+.... ... +...++...+.+++++||+++.|+.++++++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999998888876653 478999999999987532 222 334566777889999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 161 ~~~ 163 (180)
T cd04137 161 EIE 163 (180)
T ss_pred HHH
Confidence 764
No 114
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.97 E-value=2.7e-30 Score=177.15 Aligned_cols=156 Identities=19% Similarity=0.314 Sum_probs=122.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+..||+++|++|+|||||++++..+.+. .+.++.+.+.....+ ....+.+||+||++.++..+..+++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~----~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTI----GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34699999999999999999998877653 456666654433332 3478999999999998888999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH----------------cCCcEEEE
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEI 152 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----------------~~~~~~~~ 152 (173)
+|+|++++++++....|+..+... ..+.|+++++||+|+.+.....+..+.... ....++++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 999999998888877777776543 257999999999999764444444444432 22468999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030686 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|+|+.++|+++.+.+
T Consensus 172 Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EecCCCChHHHHHHHHhhC
Confidence 9999999999999998753
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.97 E-value=2.9e-30 Score=173.56 Aligned_cols=150 Identities=24% Similarity=0.311 Sum_probs=120.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
+|+++|.+|+|||||++++..+ +...+.+|.|.+...... ..+.+.+||+||+++++.++..+++++|++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRL----DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEE----CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999997755 666778888876443332 56889999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHH------HHHHHc--CCcEEEEccCCC------C
Q 030686 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKK--NLQYYEISAKSN------Y 158 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~--~~~~~~~S~~~~------~ 158 (173)
++++.+++.+..|+..+.... .+.|+++|+||+|+.+.....+.. .++.+. .+.++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999998888886542 588999999999997754332222 222222 356788999998 8
Q ss_pred ChHHHHHHHHH
Q 030686 159 NFEKPFLYLAR 169 (173)
Q Consensus 159 ~i~~~~~~i~~ 169 (173)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
No 116
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=3.5e-30 Score=173.09 Aligned_cols=151 Identities=24% Similarity=0.399 Sum_probs=117.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCc------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
+|+++|++|+|||||++++..... ...+.++.+.+...... ....+.+||+||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV----GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999765322 23344555555543333 36789999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH-------cCCcEEEEccCCCCC
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KNLQYYEISAKSNYN 159 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~~~ 159 (173)
+++|+|+++++++.....|+..+.+. ..+.|+++++||+|+.+.....+..++... .+.+++++||++|.|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 99999999998888888777776553 258999999999998765433333333322 345799999999999
Q ss_pred hHHHHHHHHH
Q 030686 160 FEKPFLYLAR 169 (173)
Q Consensus 160 i~~~~~~i~~ 169 (173)
+++++++|.+
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 117
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=5.9e-32 Score=167.91 Aligned_cols=155 Identities=27% Similarity=0.569 Sum_probs=137.7
Q ss_pred EEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECC
Q 030686 18 IVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 96 (173)
++|.+++|||+|+-++..+.+- ....+|.|+++....+..++..+++++|||.|+++|++.+..|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999887666553 345789999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 97 ARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 97 ~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+..||+..+.|+.++.++. ..+.+.+++||||+.. +.+ .++...++..++++|.++||++|.|++-.|-.|++.+.
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 9999999999999998875 4677889999999965 333 44567899999999999999999999999999888664
No 118
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=174.31 Aligned_cols=161 Identities=27% Similarity=0.468 Sum_probs=141.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
...+|++++|...+|||+|+-.+..+.|+..+.||.- +.+...+.++ +..+.+.+|||.|++.|..++...++++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3468999999999999999999999999999999996 6666778885 9999999999999999999888889999999
Q ss_pred EEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHHcC-CcEEEEc
Q 030686 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S 153 (173)
+++|++.+++|+.++. +|+.++.+++|++|+++||+|.||.+.. ..++...++++.+ ..|++||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999999976 5999999999999999999999997421 1223446777777 6799999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 030686 154 AKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~ 172 (173)
|++..|++++|+...+.++
T Consensus 161 a~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhCCcHHHHHHHHHHHh
Confidence 9999999999999888764
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.97 E-value=7.6e-30 Score=170.10 Aligned_cols=150 Identities=21% Similarity=0.315 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|++++|||||++++..+.+.. ..++.+.+..... ...+.+++||+||++.+...+..+++.++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVETVT----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEEEE----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999987766543 4566665544322 245789999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHHHHHH
Q 030686 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
++++.++.....++..+.+. ..+.|+++|+||+|+.+.....+...... ..+.+++++||++|.|++++|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 99998877766655544332 25799999999999976432222222111 123469999999999999999998
Q ss_pred HH
Q 030686 168 AR 169 (173)
Q Consensus 168 ~~ 169 (173)
++
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 75
No 120
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.97 E-value=1.3e-29 Score=162.37 Aligned_cols=157 Identities=20% Similarity=0.347 Sum_probs=131.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.++++|+++|..||||||++++|. +...+...||.|.......+ +.+.+.+||.+|+...+..|+.||..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~-~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLL-GEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhc-CCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 448999999999999999999955 55577778999988877776 7789999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhh--hcCCCCEEEEEeCCCCccccccH------HHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKA------KQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
+|+|.+++..+++-...+..+.. .....|+++++||.|+......+ +..+++....+..+.||+.+|+++.+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 99999999888777665555533 23578999999999998533222 22355567788999999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
.++|++++++
T Consensus 169 gidWL~~~l~ 178 (185)
T KOG0073|consen 169 GIDWLCDDLM 178 (185)
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.97 E-value=5.3e-30 Score=171.06 Aligned_cols=151 Identities=19% Similarity=0.303 Sum_probs=118.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
+|+++|++|+|||||++++..+.+.. ..++.+.+...... ...+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEe---CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999998877654 46676655443332 355899999999999998899999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHH------HHHcCCcEEEEccCCCCChHHHHHH
Q 030686 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++++.++.....|+..+.+. ..+.|+++|+||+|+.......+.... +...+.+++++||++|+|++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 99999888888877776543 258999999999999653222222211 1223456899999999999999999
Q ss_pred HHH
Q 030686 167 LAR 169 (173)
Q Consensus 167 i~~ 169 (173)
|.+
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.97 E-value=1.3e-29 Score=168.82 Aligned_cols=150 Identities=23% Similarity=0.376 Sum_probs=121.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|.+|+|||||++++..+. ...+.++.+.+.....+ ..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999988776 44557777766654443 46789999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHHHHHH
Q 030686 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+++++++.....|+..+... ..+.|+++++||+|+.......+..+.. .....+++++||++|.|+.++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 99999999888877776554 2589999999999997654333333222 2235679999999999999999998
Q ss_pred HH
Q 030686 168 AR 169 (173)
Q Consensus 168 ~~ 169 (173)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 75
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=1.8e-29 Score=172.16 Aligned_cols=155 Identities=17% Similarity=0.278 Sum_probs=120.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.++|+++|.+|+|||||++++..+.+. .+.++.+.+...... ..+.+.+||+||++.++..+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAI----GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 44699999999999999999998876654 345555544333222 4578999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH------------cCCcEEEEccCC
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK------------KNLQYYEISAKS 156 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~S~~~ 156 (173)
+|+|+++++++.....++..+.+. ..+.|+++|+||+|+.......+..+.... ....++++||++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 999999999888888777766543 258999999999999764433333322211 234589999999
Q ss_pred CCChHHHHHHHHHH
Q 030686 157 NYNFEKPFLYLARK 170 (173)
Q Consensus 157 ~~~i~~~~~~i~~~ 170 (173)
|.|++++++||.++
T Consensus 170 ~~g~~~~~~wl~~~ 183 (184)
T smart00178 170 RMGYGEGFKWLSQY 183 (184)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999875
No 124
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.96 E-value=2e-28 Score=166.27 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC-------ccccccc------ceeEEEEEEEEEe-----cCcEEEEEEEeCCCccccc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~~~~ 76 (173)
+|+++|.+++|||||+++|+... +...+.+ +.|.+........ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999987632 1112222 2234444333222 5567899999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC---cEEEEc
Q 030686 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS 153 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~S 153 (173)
..+..+++.+|++++|+|++++.+.+....|.... . .++|+++|+||+|+.+........+++...++ .++++|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E--NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence 99999999999999999999876666655554332 2 37899999999998653322222345555555 489999
Q ss_pred cCCCCChHHHHHHHHHHh
Q 030686 154 AKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i 171 (173)
|++|.|++++++++.+.+
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 159 AKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccCCCCHHHHHHHHHhhC
Confidence 999999999999998865
No 125
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-28 Score=161.82 Aligned_cols=159 Identities=23% Similarity=0.340 Sum_probs=135.1
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+.++.+|+++|-.++||||++.+|..+..... .||+|.....+++ .++.|++||.+|+++++.+|.+|+++.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence 456789999999999999999999887777655 9999999988887 68999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHHHHHHHcC-----CcEEEEccCCCCChH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-----LQYYEISAKSNYNFE 161 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~ 161 (173)
+|||+|.++++.+..++..+..+.... .+.|+++++||.|+++.-...+..+...... -.+..++|.+|+|+.
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 999999999999999888777776554 5899999999999998766555544333332 235679999999999
Q ss_pred HHHHHHHHHhh
Q 030686 162 KPFLYLARKLA 172 (173)
Q Consensus 162 ~~~~~i~~~i~ 172 (173)
|.++|+.+.+-
T Consensus 168 egl~wl~~~~~ 178 (181)
T KOG0070|consen 168 EGLDWLSNNLK 178 (181)
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=4.2e-28 Score=174.69 Aligned_cols=138 Identities=22% Similarity=0.403 Sum_probs=117.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-------------CcEEEEEEEeCCCccccc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-------------CGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~ 76 (173)
+...+||+++|..|+|||||+++|..+.+...+.+|+|.++....+.++ +..+.+.+||++|+++|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 4557999999999999999999999998888888999988766555543 246889999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-------------CCCCEEEEEeCCCCcccc--------cc
Q 030686 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNRQ--------VK 135 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~Dl~~~~--------~~ 135 (173)
.++..++++++++|+|||++++++++.+..|+..+.... .++|++||+||+||..+. ..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 999999999999999999999999999999999998752 258999999999996532 23
Q ss_pred HHHHHHHHHcCC
Q 030686 136 AKQVTFHRKKNL 147 (173)
Q Consensus 136 ~~~~~~~~~~~~ 147 (173)
++..+++.++++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 445678887764
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.96 E-value=7.5e-28 Score=159.95 Aligned_cols=150 Identities=24% Similarity=0.421 Sum_probs=119.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEEC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 95 (173)
|+++|++|+|||||++++..+.+...+.++.+.+...... ..+.+.+||+||++.++..+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTK----GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEE----CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999888888888887766553322 347899999999999999999999999999999999
Q ss_pred CChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 96 TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++..++.....|+..+... ..+.|+++|+||+|+.+.....+..... .....+++++|++++.|+.++++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 9998888777766665442 2588999999999987643322222211 12346789999999999999999987
Q ss_pred H
Q 030686 169 R 169 (173)
Q Consensus 169 ~ 169 (173)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
No 128
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.96 E-value=4.2e-28 Score=163.86 Aligned_cols=155 Identities=17% Similarity=0.316 Sum_probs=117.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.++|+++|++|+|||||++++.+..+. .+.++.|.+...... ....+.+||+||+..+...+..+++.++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQS----DGFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345799999999999999999997765543 346666655544333 357899999999998888888899999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHHc-----CCcEEEEccCCCCChHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
++|+|+++..++.....++..+.+. ..+.|+++++||+|+.+.....+..+..... ...++++||++|+|+++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 9999999988888777766665443 2479999999999987643222222211111 12468999999999999
Q ss_pred HHHHHHH
Q 030686 163 PFLYLAR 169 (173)
Q Consensus 163 ~~~~i~~ 169 (173)
+|+||++
T Consensus 166 ~~~~l~~ 172 (173)
T cd04155 166 GMNWVCK 172 (173)
T ss_pred HHHHHhc
Confidence 9999976
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.96 E-value=1.4e-27 Score=160.49 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc---------hhhccC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR---------DGYYIH 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~---------~~~~~~ 85 (173)
+|+++|.+|+|||||++++..+.+... +..+.+..............+++|||||+....... ......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 789999999999999999887665321 111222222222222345799999999974311100 011123
Q ss_pred CCEEEEEEECCChhhh--hcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 86 GQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|++++|+|++++.++ .....|+..+.....+.|+++|+||+|+.+.....+..++....+.+++++||++|.|++++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence 6899999999987653 45556777776655689999999999997644333344555556788999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
++++.+.++
T Consensus 160 ~~~l~~~~~ 168 (168)
T cd01897 160 KNKACELLL 168 (168)
T ss_pred HHHHHHHhC
Confidence 999998764
No 130
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=5.1e-30 Score=166.75 Aligned_cols=161 Identities=32% Similarity=0.580 Sum_probs=147.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.-+|++++|..++||||++.+++.+-|...+..++|+++....+.+....+...+||++|++++..++.+|++++++.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 45999999999999999999999999999999999999988888777788888999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||+.+++.||+....|.+.+...+.++|.++|-||+|+.+... . .+...+++..++.++.+|++...|+..+|.+++.
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999977433 2 3445788889999999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
++.
T Consensus 179 K~~ 181 (246)
T KOG4252|consen 179 KLT 181 (246)
T ss_pred HHH
Confidence 763
No 131
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=5.3e-27 Score=158.57 Aligned_cols=137 Identities=31% Similarity=0.571 Sum_probs=119.5
Q ss_pred CCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc
Q 030686 36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115 (173)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (173)
+.|.+.+.+|.|.++....+.+++..+.+.+|||+|++++..++..+++++|++++|||++++++++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677889999999988888888889999999999999999999999999999999999999999999999999887654
Q ss_pred -CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 116 -ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 116 -~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++.|+++|+||+|+.+ +.. ..+...++..+++.++++||++|.|+.++|++|++.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999965 222 33445777788889999999999999999999998763
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=7.3e-27 Score=157.31 Aligned_cols=154 Identities=15% Similarity=0.098 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCccc----ccCcchhhcc---CC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEK----FGGLRDGYYI---HG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~----~~~~~~~~~~---~~ 86 (173)
+|+++|.+|+|||||++++....... ....+.+......... .....+.+|||||+.. .+.+...+++ .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v--~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc--cCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 68999999999999999977543211 1111122221111111 1224899999999642 2233444444 59
Q ss_pred CEEEEEEECCCh-hhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHH-HHHHHHH-cCCcEEEEccCCCCCh
Q 030686 87 QCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRK-KNLQYYEISAKSNYNF 160 (173)
Q Consensus 87 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~S~~~~~~i 160 (173)
|++++|+|++++ .+++.+..|...+.... .+.|+++|+||+|+.++....+ ...+... .+.+++++|++++.|+
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 999999999999 78888888888887653 3789999999999976544333 3344444 3788999999999999
Q ss_pred HHHHHHHHHH
Q 030686 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 133
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.1e-27 Score=154.97 Aligned_cols=169 Identities=81% Similarity=1.289 Sum_probs=154.9
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030686 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|.++..+ ...++++++|..|.||||++++.+.+.+...+.+|.|.......+.-+...+.|..|||.|++.+..+..
T Consensus 1 M~~p~~~---~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd 77 (216)
T KOG0096|consen 1 MTSPPQQ---GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD 77 (216)
T ss_pred CCCCccc---cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc
Confidence 4444444 5689999999999999999999999999999999999999988877666679999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.|+-++..+++++|++.+-.+..+..|.+.+.+.+.|+|+++++||.|...+....+...+.+..+++++++|++.+.|.
T Consensus 78 gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 78 GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccc
Confidence 99999999999999999999999999999999999999999999999999988777778888899999999999999999
Q ss_pred HHHHHHHHHHhh
Q 030686 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
..-|-|+++++.
T Consensus 158 ekPFl~LarKl~ 169 (216)
T KOG0096|consen 158 ERPFLWLARKLT 169 (216)
T ss_pred ccchHHHhhhhc
Confidence 999999998864
No 134
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=150.54 Aligned_cols=156 Identities=22% Similarity=0.362 Sum_probs=131.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.++.+.++|-.++|||||++....+.+.+...|+.|.....++- ..+.+.+||.||+.+++++|..|++++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tk----gnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEecc----CceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 46889999999999999999988889888889999987766553 77899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHHHHHHH-----cCCcEEEEccCCCCChHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----KNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+|+.+++.+...+..+..+.... ..+|+++++||.|+++.-.......-... ..+..|.+||++..|++.+.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 999999998888887666665543 58999999999999987655544432222 23457999999999999999
Q ss_pred HHHHHHh
Q 030686 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+|+.++.
T Consensus 175 ~Wli~hs 181 (186)
T KOG0075|consen 175 DWLIEHS 181 (186)
T ss_pred HHHHHHh
Confidence 9998863
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.95 E-value=4.7e-26 Score=150.99 Aligned_cols=156 Identities=27% Similarity=0.469 Sum_probs=123.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999988887666666766666655566666668999999999999988898889999999999
Q ss_pred EECCCh-hhhhcHH-HHHHHHhhhcC-CCCEEEEEeCCCCccccccHHHH-HHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 93 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|.... .++.... .|...+..... +.|+++++||+|+.......... .+......+++++||+++.|+.+++++|.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 999877 5665554 56666665544 88999999999997754333333 33344467899999999999999999864
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=4.4e-26 Score=152.48 Aligned_cols=149 Identities=15% Similarity=0.056 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC---CcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.|+++|.+|+|||||+++|... .+.....++...+.......... ...+.+|||||++++......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999998743 22222222222222222233321 4689999999999887766777889999999
Q ss_pred EEECCC---hhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHHHHH---cCCcEEEEccCCCCChH
Q 030686 92 MFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNFE 161 (173)
Q Consensus 92 v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~---~~~~~~~~S~~~~~~i~ 161 (173)
|+|+++ +++.+.+ ..+... ...|+++++||+|+.+... ..+..+.... .+.+++++|++++.|++
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence 999987 3332222 222222 2349999999999976421 1222333333 46789999999999999
Q ss_pred HHHHHHHH
Q 030686 162 KPFLYLAR 169 (173)
Q Consensus 162 ~~~~~i~~ 169 (173)
++++.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=6.7e-26 Score=157.02 Aligned_cols=157 Identities=15% Similarity=0.071 Sum_probs=108.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--c------chhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--L------RDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--~------~~~~ 82 (173)
...++|+++|++|+|||||++++..........+....+.....+..++ ...+.+|||||...... . ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999887653322111111122222222322 23799999999732111 1 1112
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
+..+|++++|+|++++.+......|...+.... .+.|+++|+||+|+.+..... ..+...+.+++++||+++.|+.
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGLD 194 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCHH
Confidence 568999999999999888777766666665543 468999999999997643222 3445567789999999999999
Q ss_pred HHHHHHHHHh
Q 030686 162 KPFLYLARKL 171 (173)
Q Consensus 162 ~~~~~i~~~i 171 (173)
+++++|.+.+
T Consensus 195 ~l~~~L~~~~ 204 (204)
T cd01878 195 ELLEAIEELL 204 (204)
T ss_pred HHHHHHHhhC
Confidence 9999998754
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=2.8e-26 Score=150.29 Aligned_cols=133 Identities=21% Similarity=0.256 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc-----cccCcchhhccCCCEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCA 89 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~~~~ 89 (173)
||+++|++|+|||||++++..+.+ .+.++.+.+. . -.+|||||+. .++.+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999876654 2233332221 1 1689999972 2333333 47899999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-HHHHHHHHcCC-cEEEEccCCCCChHHHHHHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i 167 (173)
++|+|++++.++.. ..|...+ ..|+++|+||+|+.++.... +..+++...+. +++++||++|.|++++|+++
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999988765 2343322 34999999999997643333 33456666665 79999999999999999987
Q ss_pred H
Q 030686 168 A 168 (173)
Q Consensus 168 ~ 168 (173)
.
T Consensus 141 ~ 141 (142)
T TIGR02528 141 N 141 (142)
T ss_pred h
Confidence 5
No 139
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.3e-26 Score=141.27 Aligned_cols=156 Identities=21% Similarity=0.313 Sum_probs=129.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.++++|+.+|-.++||||++..|..+. +....||.|.....+++ +++.|.+||.+|+++.+.+|++||.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 458999999999999999999976665 44568999999888887 8899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHHc-----CCcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~~ 163 (173)
||+|..++...++++..+..+... ..+.|+++.+||.|+++...+.+........ .--+.++++.+|+|+.|-
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 999999998888887755554332 2588999999999999977766665433322 223578999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
|.|+.+.+
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 99998765
No 140
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=3.8e-25 Score=154.77 Aligned_cols=161 Identities=35% Similarity=0.535 Sum_probs=130.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||+++|..+.+...+.++.+..............+.+.+|||+|+++++.++..|+.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34999999999999999999999999998888898877777666665558899999999999999999999999999999
Q ss_pred EEECCChh-hhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccccc-------------HHH-HHHHHH---cCCcEEEE
Q 030686 92 MFDVTARL-TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-------------AKQ-VTFHRK---KNLQYYEI 152 (173)
Q Consensus 92 v~d~~~~~-s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~-------------~~~-~~~~~~---~~~~~~~~ 152 (173)
|+|..+.. +.+....|...+.... .+.|+++++||+|+..+... ... ...... ....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 99999955 4445556988888876 47999999999999875321 111 111111 23348999
Q ss_pred ccC--CCCChHHHHHHHHHHhh
Q 030686 153 SAK--SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 153 S~~--~~~~i~~~~~~i~~~i~ 172 (173)
|++ .+.++.++|..+.+.+.
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHH
Confidence 999 99999999999887663
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.94 E-value=7.7e-26 Score=155.57 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CCccccc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 79 (173)
.+|+++|.+++|||||+++|+. +.+...+ ..+.|.+.......+......+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999886 4443322 2234555555555555567899999999999999999
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc---HHHHHHHH-------HcCCcE
Q 030686 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNLQY 149 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~-------~~~~~~ 149 (173)
..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+.+.... .+..+++. ..++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV 159 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence 99999999999999998742 1222333444333 37899999999999653321 22223331 236789
Q ss_pred EEEccCCCCChHH
Q 030686 150 YEISAKSNYNFEK 162 (173)
Q Consensus 150 ~~~S~~~~~~i~~ 162 (173)
+++||++|.|+.+
T Consensus 160 v~~Sa~~g~~~~~ 172 (194)
T cd01891 160 LYASAKNGWASLN 172 (194)
T ss_pred EEeehhccccccc
Confidence 9999999977643
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=3.3e-25 Score=148.89 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=106.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
.|+++|.+|+|||||+++|..+.+.....+....+......... .....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999988777654433322222222222222 14678999999999998888888899999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHHHHH------HcCCcEEEEccCCCCChHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHR------KKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~------~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+++....+. ...+..+.. .++|+++|+||+|+....... ....... ...++++++|+++|.|+.+++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 9997532111 112222333 388999999999987532211 1111111 123679999999999999999
Q ss_pred HHHHHHh
Q 030686 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+++.+..
T Consensus 159 ~~l~~~~ 165 (168)
T cd01887 159 EAILLLA 165 (168)
T ss_pred HHHHHhh
Confidence 9998754
No 143
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=3.8e-25 Score=162.47 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCccc----ccCcchh---hccC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEK----FGGLRDG---YYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~----~~~~~~~---~~~~ 85 (173)
..|+++|.||||||||++++...+. . .....++|.......+. .....+.+||+||..+ ...+... .+..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-K-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-c-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 3589999999999999999765432 1 12222334433333222 2445799999999642 1223333 3457
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccc-cHH-HHHHHHHcCCcEEEEccCCCCCh
Q 030686 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
++++++|+|+++.++++.+..|..++..+. .++|+++|+||+|+.+... ..+ ...++...+.+++++||++++|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 899999999998878888888888887764 3789999999999975432 222 22344556688999999999999
Q ss_pred HHHHHHHHHHhh
Q 030686 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
++++++|.+.+.
T Consensus 317 ~eL~~~L~~~l~ 328 (335)
T PRK12299 317 DELLRALWELLE 328 (335)
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=155.43 Aligned_cols=151 Identities=21% Similarity=0.193 Sum_probs=101.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC-----------cccccCcc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLR 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~ 79 (173)
...++|+++|.+|+|||||++++.++.+.... ..+++.....+... .+.+||||| +++++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~--~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGK--RPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 34689999999999999999998876654333 33555554444332 689999999 45565555
Q ss_pred hhhcc----CCCEEEEEEECCChhhhh-c--------H-HHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHc
Q 030686 80 DGYYI----HGQCAIIMFDVTARLTYK-N--------V-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK 145 (173)
Q Consensus 80 ~~~~~----~~~~~i~v~d~~~~~s~~-~--------~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 145 (173)
..++. .++++++|+|.++...+. . . ......+.. .++|+++|+||+|+.+.. .....+++...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-DEVLDEIAERL 157 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence 55554 357888888876532210 0 0 111222222 389999999999996543 22233444444
Q ss_pred CC---------cEEEEccCCCCChHHHHHHHHHHh
Q 030686 146 NL---------QYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 146 ~~---------~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
++ +++++||++| |+++++++|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 44 5799999999 9999999999865
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=7.4e-25 Score=145.74 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=105.4
Q ss_pred EEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc------chhhcc--CCCEE
Q 030686 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYYI--HGQCA 89 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~~--~~~~~ 89 (173)
++|.+|+|||||++++.+........+..+.+.....+..+ ...+.+|||||+..+... +..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 57999999999999987665333223332333333334443 357999999998876643 455664 89999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++|+|+.+++... .+...+... ++|+++|+||+|+.+.. ...+...++...+.+++++|++++.|+.++++++.
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc--CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 9999999865422 333344433 78999999999997643 23334466677789999999999999999999998
Q ss_pred HHh
Q 030686 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+..
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 754
No 146
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=6.6e-25 Score=157.88 Aligned_cols=152 Identities=16% Similarity=0.093 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cchhhccCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~ 86 (173)
+|+++|.+|+|||||+|+|++.+... ..+..++|..............+.+|||||...... ....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999988766432 233344444433332223345789999999754321 123457899
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-HHHHHHHHcCC-cEEEEccCCCCChHHHH
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~-~~~~~S~~~~~~i~~~~ 164 (173)
|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+..... ....++...+. .++++||++|.|+++++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 9999999999876543 334444444 378999999999997533222 22233333443 78999999999999999
Q ss_pred HHHHHHh
Q 030686 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+++.+.+
T Consensus 157 ~~l~~~l 163 (270)
T TIGR00436 157 AFIEVHL 163 (270)
T ss_pred HHHHHhC
Confidence 9998765
No 147
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=2.3e-25 Score=146.06 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------cchhhc--cC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY--IH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~ 85 (173)
++|+++|.||+|||||+|+|.+.+. ......|+|.......+......+.++|+||.-.... .+..++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~--~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ--KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE--EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc--eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999776663 2345566666666555443458899999999533332 233343 57
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
.|++++|+|+++.+.-.. +..++.+. ++|+++++||+|...+.. ..+...+.+..+++++++||++++|+++++
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 999999999987653222 33444444 899999999999877443 335667888899999999999999999999
Q ss_pred HHH
Q 030686 165 LYL 167 (173)
Q Consensus 165 ~~i 167 (173)
++|
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 875
No 148
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=1.1e-24 Score=143.24 Aligned_cols=150 Identities=39% Similarity=0.667 Sum_probs=119.3
Q ss_pred EEcCCCCCHHHHHHHHhhCCc-ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECC
Q 030686 18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 96 (173)
++|++|+|||||++++..... .....++. .+..............+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999887766 34444554 5666666666667889999999999888888888999999999999999
Q ss_pred ChhhhhcHHHHH--HHHhhhcCCCCEEEEEeCCCCccccccHHH---HHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 97 ARLTYKNVPTWH--RDLCRVCENIPIVLCGNKVDVKNRQVKAKQ---VTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 97 ~~~s~~~~~~~~--~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++.+...+..|. ........+.|+++++||+|+......... .........+++++|+..+.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888887762 222333468999999999999775444332 344555678999999999999999999975
No 149
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=1.3e-24 Score=160.55 Aligned_cols=155 Identities=17% Similarity=0.282 Sum_probs=106.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc-ccCcch-------hh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRD-------GY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~-------~~ 82 (173)
.+.++|+++|.+|+|||||+++|++..+. ...+..++|.......+......+.+|||||... +..+.. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 34579999999999999999998876653 2234444444333222222445789999999843 332222 23
Q ss_pred ccCCCEEEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcC--CcEEEEccCCCCC
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYN 159 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~ 159 (173)
+..+|++++|+|..+ ++.... .|+..+... +.|.++|+||+|+.+.. ..+..+.+.... ..++++||++|.|
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 678999999999765 334443 355555443 67888999999997542 233444444443 5799999999999
Q ss_pred hHHHHHHHHHHh
Q 030686 160 FEKPFLYLARKL 171 (173)
Q Consensus 160 i~~~~~~i~~~i 171 (173)
++++++++.+.+
T Consensus 204 v~eL~~~L~~~l 215 (339)
T PRK15494 204 IDGLLEYITSKA 215 (339)
T ss_pred HHHHHHHHHHhC
Confidence 999999998765
No 150
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.93 E-value=1.8e-24 Score=169.38 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=115.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC-------cccccc------cceeEEEEEEEEEe-----cCcEEEEEEEeCCCccc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYE------PTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~~ 74 (173)
-.+++++|+.++|||||+++|+... +...+. ...|.++......+ ++..+.+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999987542 111221 12355554433322 45668999999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC---cEEE
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYE 151 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~ 151 (173)
|...+..++..+|++++|+|++++.+.+....|...+. .++|+++|+||+|+.+........++....++ .+++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~ 159 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAIL 159 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEE
Confidence 99999999999999999999998776666665554432 37899999999999754322222344444554 4899
Q ss_pred EccCCCCChHHHHHHHHHHh
Q 030686 152 ISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i 171 (173)
+||++|.|+.++|+++.+.+
T Consensus 160 vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 160 ASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred eeccCCCCHHHHHHHHHHhC
Confidence 99999999999999998765
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=1.4e-24 Score=166.86 Aligned_cols=153 Identities=22% Similarity=0.219 Sum_probs=107.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc--------ccCcchhhcc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYI 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~ 84 (173)
..+|+++|.+|+|||||+++|+.+... ....+.|++...........+..+.+|||||.+. +...+..+++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~-~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREA-VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcc-cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 368999999999999999998866532 2344556555544444333445789999999763 2233556788
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHH
Q 030686 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 163 (173)
.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+..... +..++. ..++ ..+++||++|.|++++
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHGRGVGDL 190 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCCCCcHHH
Confidence 9999999999998755432 234444443 3899999999999865321 122222 2232 4579999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
++++.+.+.
T Consensus 191 ~~~i~~~l~ 199 (472)
T PRK03003 191 LDAVLAALP 199 (472)
T ss_pred HHHHHhhcc
Confidence 999988753
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=3.5e-24 Score=142.19 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhhccC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~~~ 85 (173)
++|+++|++|+|||||++++....... ..+..+++..............+.+|||||...+... ...++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI-VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe-ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 589999999999999999987665321 1222333333222222234568899999997665432 2345678
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030686 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|++++++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence 999999999998776555443322 348999999999999764433 3344567899999999999999999
Q ss_pred HHHHHh
Q 030686 166 YLARKL 171 (173)
Q Consensus 166 ~i~~~i 171 (173)
+|.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 988754
No 153
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=2.7e-24 Score=163.23 Aligned_cols=151 Identities=23% Similarity=0.250 Sum_probs=109.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhhc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 83 (173)
..+||+++|.+|+|||||+|+|+..... ...+..|++.......+.-.+..+.+|||||...+... ...++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~a-ivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRA-IVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 4589999999999999999998765421 12233444554444333334567899999998665432 23577
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+.+|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+.+. +...++...+.+++++|+++ .|++++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~~ 351 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKAL 351 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHHH
Confidence 899999999999988776554 5555543 37899999999999654 12344556678899999998 699999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
++.+.+.+.
T Consensus 352 ~~~L~~~i~ 360 (442)
T TIGR00450 352 VDLLTQKIN 360 (442)
T ss_pred HHHHHHHHH
Confidence 998887653
No 154
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=1.4e-24 Score=138.08 Aligned_cols=114 Identities=28% Similarity=0.536 Sum_probs=88.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcc--cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
||+|+|.+|+|||||+++|...... ....++.+.+..............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999887765 12233333344434455555666799999999999888888889999999999
Q ss_pred EECCChhhhhcHHH---HHHHHhhhcCCCCEEEEEeCCC
Q 030686 93 FDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 93 ~d~~~~~s~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 128 (173)
||++++++++.+.. |+..+....++.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999988754 5666666667899999999998
No 155
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=3.2e-24 Score=142.46 Aligned_cols=148 Identities=21% Similarity=0.150 Sum_probs=100.7
Q ss_pred EEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cchhhccCCCE
Q 030686 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQC 88 (173)
Q Consensus 17 ~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~~~ 88 (173)
+++|.+|+|||||++++...... ......+++..............+.+|||||+..+.. .+...++.+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA-IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE-eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 47899999999999998765421 1122223333333323333457899999999887544 33456788999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHHHHHH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i 167 (173)
+++|+|..++.+.... .....+... +.|+++|+||+|+.+.... .......+. +++++|++++.|++++++++
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 9999999875433322 223333333 6899999999999765332 222333454 78999999999999999999
Q ss_pred HHHh
Q 030686 168 ARKL 171 (173)
Q Consensus 168 ~~~i 171 (173)
.+.+
T Consensus 154 ~~~~ 157 (157)
T cd01894 154 LELL 157 (157)
T ss_pred HhhC
Confidence 8753
No 156
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=4.4e-24 Score=146.63 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC----Cccccc-----ccceeEEEEEEEEE----------ecCcEEEEEEEeCCCccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG----EFEKKY-----EPTIGVEVHPLDFF----------TNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~~~D~~G~~~ 74 (173)
++|+++|++++|||||+++|+.. .+.... ..|.+.......+. .....+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999998752 111111 12333333333332 123467899999999865
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----HHHHHHH-------
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHR------- 143 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~------- 143 (173)
+........+.+|++++|+|+++.........+. +... .+.|+++++||+|+....... +..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4333333455689999999998754333322221 1122 267999999999987432211 1111111
Q ss_pred HcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 144 KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 144 ~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
..+.+++++||++|.|+.++++++.++++
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23578999999999999999999998764
No 157
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=1.2e-23 Score=154.44 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccc----cCcchhh---ccC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF----GGLRDGY---YIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~----~~~~~~~---~~~ 85 (173)
..|+++|.+|+|||||++++....... .....+|.......+. .....+++||+||.... ..+...+ +..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~v--a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 469999999999999999977654211 1111122221111111 13368899999997432 2333344 346
Q ss_pred CCEEEEEEECCCh---hhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHHH-HHHHHHcCCcEEEEccCCCC
Q 030686 86 GQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 86 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~S~~~~~ 158 (173)
++++++|+|+++. ++++.+..|..++..+. .+.|+++|+||+|+.+.....+. ..+....+.+++++||++++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 9999999999976 56677777777776553 47899999999999765332222 24555567889999999999
Q ss_pred ChHHHHHHHHHHh
Q 030686 159 NFEKPFLYLARKL 171 (173)
Q Consensus 159 ~i~~~~~~i~~~i 171 (173)
|++++++++.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 158
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=7.5e-24 Score=156.75 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccc--cccceeEEEEEEEEEecCcEEEEEEEeCCCcc---------cccCcchh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDG 81 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~ 81 (173)
.++|+++|.+|+|||||+|+|.+...... ..+|... ....+... ....+.+|||+|.. .++.. ..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~--~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~t-le 264 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDP--TTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRAT-LE 264 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCC--EEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 48999999999999999999887653211 1223222 22233332 23589999999972 12221 12
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.+.++|++++|+|++++.+.+....|...+.... .+.|+++|+||+|+.+... .... .....+++++||++|.|+
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~---v~~~-~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR---IERL-EEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh---HHHH-HhCCCCEEEEEccCCCCH
Confidence 4678999999999999887777666655555442 4789999999999965321 1111 122346899999999999
Q ss_pred HHHHHHHHHH
Q 030686 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
++++++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 159
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=3.4e-24 Score=144.98 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=103.2
Q ss_pred EEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCc-EEEEEEEeCCCccc----ccCcc---hhhccCCCEE
Q 030686 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLR---DGYYIHGQCA 89 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~----~~~~~---~~~~~~~~~~ 89 (173)
++|++|+|||||++++.+..... ....+++........... ...+.+||+||... .+.++ ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV--ANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccc--cCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 57999999999999987765411 111122222211112123 56789999999632 22232 2346789999
Q ss_pred EEEEECCCh------hhhhcHHHHHHHHhhhc--------CCCCEEEEEeCCCCccccccHHH--HHHHHHcCCcEEEEc
Q 030686 90 IIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~S 153 (173)
++|+|++++ .++.....|...+.... .+.|+++|+||+|+.......+. .......+..++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999988 46777766766665432 37899999999999764433322 233444567899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 030686 154 AKSNYNFEKPFLYLARK 170 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~ 170 (173)
++++.|+.++++++++.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=4.1e-24 Score=162.97 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=107.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhhc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 83 (173)
..++|+++|.+|+|||||+|+|+..... ...+..+++.......+.-.+..+.+|||||.+.+... ...++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERA-IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3489999999999999999998765431 11233344444333333324567899999998765432 23467
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|++++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence 88999999999998876665433332 4588999999999997543221 344578999999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
++++.+.+
T Consensus 362 ~~~L~~~l 369 (449)
T PRK05291 362 REAIKELA 369 (449)
T ss_pred HHHHHHHH
Confidence 99998765
No 161
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6e-25 Score=142.34 Aligned_cols=157 Identities=24% Similarity=0.391 Sum_probs=125.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC-------CcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhcc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTG-------EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 84 (173)
..+.++++|..++|||||+.+.... -.+..-.+|.|.....+.+ ....+.+||.+|++..+++|..||.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHHHH
Confidence 4688999999999999999885432 1123445677776666555 3678999999999999999999999
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH------HcCCcEEEEccCC
Q 030686 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKS 156 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~S~~~ 156 (173)
.++++++++|+++++.++.....++.+... ..+.|+++.+||.|+.+.....+...... +..+.+.++||.+
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~ 171 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALT 171 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhh
Confidence 999999999999999888877766665443 36999999999999998776665543332 2347799999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030686 157 NYNFEKPFLYLARKLA 172 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i~ 172 (173)
|+|+++..+|+...+.
T Consensus 172 gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 172 GEGVKEGIEWLVKKLE 187 (197)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999988764
No 162
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=1.4e-23 Score=143.36 Aligned_cols=155 Identities=19% Similarity=0.126 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccc--------------eeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--------------IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
+|+++|.+|+|||||++++............ .+.+..............+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999998776554332111 11222222222233457899999999998888888
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc----HHHHHHHHH------------
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRK------------ 144 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~------------ 144 (173)
.+++.+|++++|+|+.++.+... ..++..+.. .+.|+++++||+|+...... ....+....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR 157 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence 89999999999999987654332 233334433 48999999999999762221 112222222
Q ss_pred --cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 145 --KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 145 --~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
...+++++||++|.|+.++++++.+.+.
T Consensus 158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 158 NGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3577899999999999999999988753
No 163
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=3.2e-23 Score=158.22 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=108.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc-----------
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------- 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----------- 79 (173)
...++|+++|.+|+|||||+++++..... ...+..|++.......+...+..+.+|||||..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERV-IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCee-ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 34589999999999999999998765432 123344555554444333334578999999986655432
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc-cccccHHHH-HHHHH----cCCcEEEEc
Q 030686 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRK----KNLQYYEIS 153 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~-~~~~~----~~~~~~~~S 153 (173)
..+++.+|++++|+|++++.+.++.. ++..+.. .+.|+++|+||+|+. +.....+.. ..... ..++++++|
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 23578999999999999876655542 3333333 378999999999997 222112222 11111 247899999
Q ss_pred cCCCCChHHHHHHHHHHh
Q 030686 154 AKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i 171 (173)
|++|.|+.++|+++.+..
T Consensus 326 A~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987643
No 164
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=4.1e-23 Score=155.34 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=107.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC-cEEEEEEEeCCCccc----ccCcchhhc---cCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEK----FGGLRDGYY---IHG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~----~~~~~~~~~---~~~ 86 (173)
.|+++|.||||||||++++...+.. ......+|..+....+.. ....+.+||+||... ...+...|+ ..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 7999999999999999997755422 122223333333222221 256799999999643 223344444 458
Q ss_pred CEEEEEEECCCh---hhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
+++++|+|+++. +.++....|...+..+. .++|+++|+||+|+... ......+....+.+++++||++++|+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 999999999864 56666667777776653 37899999999998542 22234455555678999999999999
Q ss_pred HHHHHHHHHHh
Q 030686 161 EKPFLYLARKL 171 (173)
Q Consensus 161 ~~~~~~i~~~i 171 (173)
+++++++.+.+
T Consensus 316 ~eL~~~L~~~l 326 (424)
T PRK12297 316 DELLYAVAELL 326 (424)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.5e-23 Score=161.32 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=106.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc----------cCc-ch
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGL-RD 80 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~-~~ 80 (173)
..++|+++|.+|+|||||+++|+..... ...+..|++.......+...+..+.+|||||..+. ..+ ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~-~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS-VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 4589999999999999999998876542 12334444444333222223346789999996422 111 12
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH----HH-HHHHHcCCcEEEEccC
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QV-TFHRKKNLQYYEISAK 155 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~-~~~~~~~~~~~~~S~~ 155 (173)
.+++.+|++++|+|++++.+.+... ++..+.. .+.|+++|+||+|+.+...... .. .+.....++++++||+
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence 3568999999999999987776653 3444433 3899999999999975321111 11 1222234789999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030686 156 SNYNFEKPFLYLARKL 171 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i 171 (173)
+|.|++++|+.+.+.+
T Consensus 366 ~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 366 TGRAVDKLVPALETAL 381 (472)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 166
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=1.4e-22 Score=135.54 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=103.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cchhhc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~ 83 (173)
...+|+++|++|+|||||++++.+...... .+....+..............+.+||+||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIV-SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEec-cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 357899999999999999999876543222 11122222222333334557899999999754432 233457
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHHHH-HHHHHc-CCcEEEEccCCCCCh
Q 030686 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNF 160 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~-~~~~~~-~~~~~~~S~~~~~~i 160 (173)
..+|++++|+|++++.+ +....+...+... +.|+++++||+|+.. .....+.. .+.... ..+++++|++++.|+
T Consensus 81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HhCCEEEEEEECCCccC-chHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 88999999999998721 1222333444333 689999999999974 33222222 333333 368999999999999
Q ss_pred HHHHHHHHHH
Q 030686 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999765
No 167
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.91 E-value=1.3e-22 Score=158.43 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=106.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+..+|+++|++++|||||++++....+.....+....+.....+...+. ..+.+|||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 345689999999999999999998876665433322222222223333222 2789999999999999998889999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHc---------CCcEEEEccCCCCCh
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---------NLQYYEISAKSNYNF 160 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~S~~~~~~i 160 (173)
++|+|+++...-+... .+..... .++|+++++||+|+.+... .+..+.+... ..+++++||++|+|+
T Consensus 163 ILVVda~dgv~~qT~e-~i~~~~~--~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 163 VLVVAADDGVMPQTIE-AISHAKA--ANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEEEECCCCCCHhHHH-HHHHHHH--cCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9999998753222221 1222222 3899999999999965321 1222222222 246999999999999
Q ss_pred HHHHHHHHH
Q 030686 161 EKPFLYLAR 169 (173)
Q Consensus 161 ~~~~~~i~~ 169 (173)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
No 168
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.3e-22 Score=136.62 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=100.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc-----------chh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDG 81 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~~~ 81 (173)
.++|+++|.+|+|||||++++........ ....+++..............+.+||+||....... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 57899999999999999999876543211 112222322222222223446889999997543211 123
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--ccHHHH-HHHHHc----CCcEEEEcc
Q 030686 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV-TFHRKK----NLQYYEISA 154 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~-~~~~~~----~~~~~~~S~ 154 (173)
.+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+.. ...... ...... ..+++++||
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 46789999999999988664443 23333332 378999999999997652 222212 222222 368999999
Q ss_pred CCCCChHHHHHHHHHH
Q 030686 155 KSNYNFEKPFLYLARK 170 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~ 170 (173)
+++.|+.++++++.+.
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999998763
No 169
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=1.1e-22 Score=139.96 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=105.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc----------cccCcch
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLRD 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~ 80 (173)
....+|+++|.+|+|||||+++++...+...+.++.+.+........ ...+.+|||||.. .+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 35689999999999999999998876655555666665554333222 3679999999953 2223334
Q ss_pred hhccCC---CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH----HHHHHHHcCCcEEEEc
Q 030686 81 GYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYEIS 153 (173)
Q Consensus 81 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~S 153 (173)
.+++.+ +++++++|.+.+.+.... .....+.. .+.|+++++||+|+.+...... ...........++++|
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~S 175 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFS 175 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 455543 678888998765432221 11222222 3789999999999865322221 2233333367899999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 030686 154 AKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~ 172 (173)
++++.|++++++.|.+.+.
T Consensus 176 a~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 176 SLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCCCCHHHHHHHHHHHhc
Confidence 9999999999999987654
No 170
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.90 E-value=5.7e-23 Score=130.98 Aligned_cols=162 Identities=25% Similarity=0.396 Sum_probs=139.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+.-.+||.++|.+..|||||+-.++++.+.+.+..+.|.++...++.+.+..+.|.+||.+|++++..+..-...++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 34469999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccccc-------cHHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV-------KAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
++++|++.++.+..+..|+++-+..+. -+| ++|++|-|+--+.. .......++-.+.+.+.+|+..+.|++
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 999999999999999999999887753 344 56799999643222 222335666678999999999999999
Q ss_pred HHHHHHHHHhh
Q 030686 162 KPFLYLARKLA 172 (173)
Q Consensus 162 ~~~~~i~~~i~ 172 (173)
.+|.-+.-+++
T Consensus 176 KIFK~vlAklF 186 (205)
T KOG1673|consen 176 KIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHHh
Confidence 99998877765
No 171
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=5.9e-23 Score=136.71 Aligned_cols=138 Identities=17% Similarity=0.094 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc----hhhccCCCEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI 90 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----~~~~~~~~~~i 90 (173)
+|+++|.+|+|||||++++. +.+.. ...+.+. .+... .+||+||.......+ ...+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~-~~~~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ-GNYTL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc-CCCcc-CccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999955 43321 1222221 11212 269999973222211 22368999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC--cEEEEccCCCCChHHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|+|+++..++.. .|+..+ ..+.|+++++||+|+.+.. .....+++...+. +++++||++++|++++|+++.
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 9999998876533 333332 2377999999999996532 2334456666664 899999999999999999998
Q ss_pred HHh
Q 030686 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 144 ~~~ 146 (158)
T PRK15467 144 SLT 146 (158)
T ss_pred Hhc
Confidence 754
No 172
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.90 E-value=2.1e-23 Score=131.00 Aligned_cols=157 Identities=20% Similarity=0.319 Sum_probs=126.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+++||+++|-.++|||||+++ +.+..+....||.|.....+.. ..++++.+||++|+...+..|..||.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccceE
Confidence 35789999999999999999999 6677777788999888776665 2668999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~ 162 (173)
|||+|.+++..|+++...+-++.+. ...+|+++..||.|+.-....++...-+ +.....+-+||+.+++|+..
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence 9999999998888887766666543 3589999999999986544333332211 12223467899999999999
Q ss_pred HHHHHHHH
Q 030686 163 PFLYLARK 170 (173)
Q Consensus 163 ~~~~i~~~ 170 (173)
-.+|+++.
T Consensus 170 g~~wv~sn 177 (185)
T KOG0074|consen 170 GSDWVQSN 177 (185)
T ss_pred cchhhhcC
Confidence 99988764
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=6.9e-23 Score=139.21 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=98.0
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc----------cc
Q 030686 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FG 76 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~ 76 (173)
+..+....+|+++|.+|+|||||++++....+...+.++.+.+.....+..+. .+.+|||||... +.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 33445678999999999999999999887654444455666555443333332 689999999532 22
Q ss_pred CcchhhccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHHHHHcC--C
Q 030686 77 GLRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--L 147 (173)
Q Consensus 77 ~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~--~ 147 (173)
.....+++. ++++++|+|++.+-+.... .++..+... +.|+++++||+|+..... ..+..+.+...+ .
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 223345543 5799999999875443333 223333333 789999999999875321 122233444432 4
Q ss_pred cEEEEccCCCCChH
Q 030686 148 QYYEISAKSNYNFE 161 (173)
Q Consensus 148 ~~~~~S~~~~~~i~ 161 (173)
.++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999974
No 174
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=2.5e-23 Score=142.41 Aligned_cols=157 Identities=19% Similarity=0.183 Sum_probs=107.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCc--cc--------------ccccceeEEEEEEEEEec--CcEEEEEEEeCCCcc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EK--------------KYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQE 73 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~ 73 (173)
+.++|+++|+.++|||||+++|+.... .. ......+.+......... .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 468999999999999999999874331 11 000111222222222222 567899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH----HHHHHc----
Q 030686 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRKK---- 145 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~~---- 145 (173)
.|.......+..+|++++|+|+.++...+. ...+..+... ++|+++|+||+|+.......... .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 988888888999999999999987643222 2333444443 88999999999998433222222 232222
Q ss_pred --CCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 146 --NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 146 --~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.++++++||++|.|+.++++.+.+.+
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999998865
No 175
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.7e-22 Score=153.95 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc----cCcc---hhhccCC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLR---DGYYIHG 86 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~---~~~~~~~ 86 (173)
..|+++|.||||||||+++|...+.. .....++|.......+......|++||+||.... ..+. ...+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 47999999999999999997755432 1233344444444333334568999999995321 1121 2235679
Q ss_pred CEEEEEEECCCh----hhhhcHHHHHHHHhhh------------cCCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcE
Q 030686 87 QCAIIMFDVTAR----LTYKNVPTWHRDLCRV------------CENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQY 149 (173)
Q Consensus 87 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~~------------~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~ 149 (173)
+++++|+|+++. ..+..+..+..++..+ ..++|+++|+||+|+.+..... .........+.++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV 317 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence 999999999853 2344444444444333 2378999999999997543222 2223334557889
Q ss_pred EEEccCCCCChHHHHHHHHHHh
Q 030686 150 YEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 150 ~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+++||++++|+++++++|.+.+
T Consensus 318 f~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 318 FEVSAASREGLRELSFALAELV 339 (500)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 176
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.3e-23 Score=132.25 Aligned_cols=155 Identities=22% Similarity=0.354 Sum_probs=124.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.+.+|+++|-.|+||+|+..++..+.. ....|++|.....+++ ++.++++||.+|+.+.+..|++|+.+.+++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 679999999999999999998655554 3457888877776665 88999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHH-----HHHHcCCcEEEEccCCCCChHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+|.+|+.........+-.+.+. ..+..+++++||.|...+....+... ..+..-.++|+.||.+|+|+++.+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 99999988766665544433332 24677889999999988766555442 223344789999999999999999
Q ss_pred HHHHHHh
Q 030686 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+|+.+.+
T Consensus 172 DWL~~~l 178 (182)
T KOG0072|consen 172 DWLQRPL 178 (182)
T ss_pred HHHHHHH
Confidence 9998865
No 177
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.90 E-value=2.9e-22 Score=160.45 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=116.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc----------chh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDG 81 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------~~~ 81 (173)
+.++|+++|.+|+|||||+|++.+... ......|+|.......+......+.+||+||..++... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 457999999999999999999875543 33556778887777666667789999999998766432 122
Q ss_pred hc--cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHHHHHHHHHcCCcEEEEccCCCC
Q 030686 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (173)
++ ..+|++++|+|+++.+... .+..++.+. ++|+++++||+|+.+ +....+..++.+..+++++++|+++++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~ 154 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNL---YLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGR 154 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhH---HHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCC
Confidence 32 3789999999999865432 233444443 899999999999875 344445567778889999999999999
Q ss_pred ChHHHHHHHHHH
Q 030686 159 NFEKPFLYLARK 170 (173)
Q Consensus 159 ~i~~~~~~i~~~ 170 (173)
|++++++.+.+.
T Consensus 155 GIdeL~~~I~~~ 166 (772)
T PRK09554 155 GIEALKLAIDRH 166 (772)
T ss_pred CHHHHHHHHHHh
Confidence 999999988653
No 178
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=1.6e-22 Score=139.92 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=76.5
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----H
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----K 137 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~ 137 (173)
..+.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+..... +
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~ 161 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQ 161 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHH
Confidence 67899999999988777777788899999999999742111112222222222 234799999999997532211 1
Q ss_pred HHHHHHH---cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 138 ~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
..+++.. .+.+++++||++|+|++++++++.+.+.
T Consensus 162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 2233332 2578999999999999999999988764
No 179
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.90 E-value=1.2e-22 Score=159.36 Aligned_cols=156 Identities=14% Similarity=0.175 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC--Cccc-----cc------ccceeEEEEEEEEEe-----cCcEEEEEEEeCCCccc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEK-----KY------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~--~~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~~ 74 (173)
..+++++|+.++|||||+++|+.. .... .+ ....|.+.......+ ++..+.+.+|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 358999999999999999998752 1111 00 112344443322222 45578999999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCc---EEE
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---YYE 151 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 151 (173)
|...+..++..+|++++|+|++++...+....|.... . .+.|+++|+||+|+.+........++....++. +++
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~--~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~ 163 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E--NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVL 163 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H--CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEE
Confidence 9988999999999999999999876555554554332 2 388999999999997543322223444444543 899
Q ss_pred EccCCCCChHHHHHHHHHHh
Q 030686 152 ISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i 171 (173)
+||++|.|+.+++++|.+.+
T Consensus 164 iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 164 VSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred EecCCCCCHHHHHHHHHHhC
Confidence 99999999999999998765
No 180
>PRK11058 GTPase HflX; Provisional
Probab=99.90 E-value=3.5e-22 Score=151.05 Aligned_cols=154 Identities=16% Similarity=0.096 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc--cCcchh------hccC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRDG------YYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~~~------~~~~ 85 (173)
.+|+++|.+|+|||||+|+|..........+....+.....+...+ ...+.+|||+|..+. ...+.. .+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 5899999999999999999876543211111111122212222322 236789999997432 222332 3578
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcCCc-EEEEccCCCCChHHH
Q 030686 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKP 163 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~ 163 (173)
+|++++|+|++++.+...+..|...+.... .+.|+++|+||+|+.+..... ... ...+.+ ++++||++|.|++++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~-~~~~~~~~v~ISAktG~GIdeL 353 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDR-DEENKPIRVWLSAQTGAGIPLL 353 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHH-HhcCCCceEEEeCCCCCCHHHH
Confidence 999999999999887777654444444332 378999999999996532111 111 123444 488999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
++++.+.+
T Consensus 354 ~e~I~~~l 361 (426)
T PRK11058 354 FQALTERL 361 (426)
T ss_pred HHHHHHHh
Confidence 99998876
No 181
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=4e-22 Score=145.16 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=104.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cchhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~ 82 (173)
.+.-.|+++|.+|+|||||+|++++..... ..+...++..............+.+|||||...... .....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~-vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISI-VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceee-cCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 345679999999999999999987665432 233333444433333333447899999999754332 22335
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHH-HHHHHHHc-CCcEEEEccCCCCC
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYN 159 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~-~~~~~~~~-~~~~~~~S~~~~~~ 159 (173)
+..+|++++|+|+++..+ ......+..+.. .+.|+++|+||+|+.. .....+ ...+.... ...++++||+++.|
T Consensus 82 ~~~~D~il~vvd~~~~~~-~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG-PGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred HhcCCEEEEEEeCCCCCC-hhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 678999999999988321 111222333332 3789999999999973 222222 22333333 36789999999999
Q ss_pred hHHHHHHHHHHh
Q 030686 160 FEKPFLYLARKL 171 (173)
Q Consensus 160 i~~~~~~i~~~i 171 (173)
++++++++.+.+
T Consensus 159 v~~L~~~L~~~l 170 (292)
T PRK00089 159 VDELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHHhC
Confidence 999999998765
No 182
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.89 E-value=3.1e-22 Score=138.37 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=87.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC-CEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-~~~i~v~ 93 (173)
+|+++|++++|||+|+++|..+.+...+.++ .................+.+||+||+++++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999998888766554433 2222222222123457899999999999998888899998 9999999
Q ss_pred ECCCh-hhhhcHHHHHHHHhh----hcCCCCEEEEEeCCCCcc
Q 030686 94 DVTAR-LTYKNVPTWHRDLCR----VCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 94 d~~~~-~s~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~ 131 (173)
|+.+. +++.....++..+.. ..++.|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 667766665544432 225899999999999865
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=2e-22 Score=153.91 Aligned_cols=150 Identities=20% Similarity=0.164 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc--------cccCcchhhccCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYIHG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~~~ 86 (173)
+|+++|.+|+|||||+|+|.++.. .......|++...........+..+.+|||||.. .+......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 589999999999999999876553 2234455555554444433345679999999963 3334455678899
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHHHH
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~ 165 (173)
|++++|+|+.++.+..+ ..+...+++. ++|+++|+||+|+.+.... ..+ +...++ .++++||.+|.|+.++++
T Consensus 80 d~vl~vvD~~~~~~~~d-~~i~~~l~~~--~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPED-EEIAKWLRKS--GKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHH-HHHHHHHHHh--CCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCChHHHHH
Confidence 99999999987533222 1222333332 7899999999998754321 222 334555 799999999999999999
Q ss_pred HHHHHh
Q 030686 166 YLARKL 171 (173)
Q Consensus 166 ~i~~~i 171 (173)
++.+.+
T Consensus 154 ~i~~~l 159 (429)
T TIGR03594 154 AILELL 159 (429)
T ss_pred HHHHhc
Confidence 998765
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=3.4e-22 Score=158.41 Aligned_cols=157 Identities=19% Similarity=0.212 Sum_probs=109.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc--ceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+..+|+++|.+++|||||+++|....+.....+ |.............+....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4567999999999999999999876655432222 21112222333333456899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHH------HHHcC--CcEEEEccCCCCCh
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYNF 160 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~------~~~~~--~~~~~~S~~~~~~i 160 (173)
+++|+|++++...+.... +..+.. .++|+++++||+|+.+.....-...+ ....+ ++++++||++|.|+
T Consensus 322 aILVVDA~dGv~~QT~E~-I~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GI 398 (742)
T CHL00189 322 AILIIAADDGVKPQTIEA-INYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNI 398 (742)
T ss_pred EEEEEECcCCCChhhHHH-HHHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCH
Confidence 999999987533222221 222222 38999999999999764321111111 11222 68999999999999
Q ss_pred HHHHHHHHHH
Q 030686 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
.++++++...
T Consensus 399 deLle~I~~l 408 (742)
T CHL00189 399 DKLLETILLL 408 (742)
T ss_pred HHHHHhhhhh
Confidence 9999998753
No 185
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-21 Score=124.38 Aligned_cols=160 Identities=21% Similarity=0.372 Sum_probs=124.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcc--cccccceeEEEEEEEEE-ecCcEEEEEEEeCCCcccc-cCcchhhccCCC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFF-TNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQ 87 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~-~~~~~~~~~~~~ 87 (173)
+-.|++++|..++|||+|+++++.+... ..+.+|+.. .+...+. -.+..-.+.++||.|-..+ ..+-++|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 4579999999999999999998876543 345566653 3333332 2344568999999996655 678899999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
++++|||..+++||+.+..+-..|.+.. ..+|+++++||+|+.+ +.. ..-...|+.+..+.++++++.+...+-|.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 9999999999999987765545554432 4789999999999965 333 33445799999999999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|-+++..+.
T Consensus 167 f~~l~~rl~ 175 (198)
T KOG3883|consen 167 FTYLASRLH 175 (198)
T ss_pred HHHHHHhcc
Confidence 999988754
No 186
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.89 E-value=5.8e-22 Score=155.22 Aligned_cols=150 Identities=19% Similarity=0.121 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh---CCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT---GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
+.|+++|.+++|||||+++|.+ +.++....+....+.....+..+ ...+.+||+||++.|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--DYRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--CEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4689999999999999999774 23333333333333332233333 378999999999999888888889999999
Q ss_pred EEEECCCh---hhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccccc----HHHHHHHHHc----CCcEEEEccCCCC
Q 030686 91 IMFDVTAR---LTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEISAKSNY 158 (173)
Q Consensus 91 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~----~~~~~~~~~~----~~~~~~~S~~~~~ 158 (173)
+|+|++++ .+.+.+ ..+.. .++| +++|+||+|+.+.... .+..++.... +++++++|+++|.
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 99999974 333222 22222 2677 9999999999764321 2223444433 5789999999999
Q ss_pred ChHHHHHHHHHHh
Q 030686 159 NFEKPFLYLARKL 171 (173)
Q Consensus 159 ~i~~~~~~i~~~i 171 (173)
|++++++++.+.+
T Consensus 153 GI~eL~~~L~~l~ 165 (581)
T TIGR00475 153 GIGELKKELKNLL 165 (581)
T ss_pred CchhHHHHHHHHH
Confidence 9999999887643
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.4e-21 Score=149.44 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=107.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc-----------c
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------R 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~ 79 (173)
...++|+++|.+|+|||||++++++.... ...+..|++.......+......+.+|||||..+.... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERV-IVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 34699999999999999999998755421 22344556666555444445567899999997543322 1
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHH----HcCCcEEEEcc
Q 030686 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHR----KKNLQYYEISA 154 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~----~~~~~~~~~S~ 154 (173)
..+++.+|++++|+|++++.+.++.. +...+... ++|+++++||+|+.+.....+.. .... ...++++++||
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 23577899999999999876655432 33333332 78999999999997433222221 1111 23578999999
Q ss_pred CCCCChHHHHHHHHHH
Q 030686 155 KSNYNFEKPFLYLARK 170 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~ 170 (173)
++|.|+.++++.+.+.
T Consensus 327 ~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 327 LTGQGVDKLLEAIDEA 342 (435)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988764
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.89 E-value=1.3e-21 Score=156.33 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=106.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+...|+++|..++|||||+++|..+.+...... |.+.......+......+.||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~--GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAG--GITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccC--ceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45668899999999999999999876655433222 2332222222222346799999999999999999899999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHH---HHHHc--CCcEEEEccCCCCChH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVT---FHRKK--NLQYYEISAKSNYNFE 161 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~---~~~~~--~~~~~~~S~~~~~~i~ 161 (173)
++|+|+++...-+.... +..... .++|+++++||+|+.+..... +... +...+ .++++++||++|.|++
T Consensus 365 ILVVdAddGv~~qT~e~-i~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 365 VLVVAADDGVMPQTIEA-INHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EEEEECCCCCCHhHHHH-HHHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99999987532122111 122222 389999999999996532111 1111 11222 2689999999999999
Q ss_pred HHHHHHHH
Q 030686 162 KPFLYLAR 169 (173)
Q Consensus 162 ~~~~~i~~ 169 (173)
+++++|..
T Consensus 442 eLle~I~~ 449 (787)
T PRK05306 442 ELLEAILL 449 (787)
T ss_pred HHHHhhhh
Confidence 99999864
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=4.4e-22 Score=152.21 Aligned_cols=147 Identities=23% Similarity=0.199 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc--------ccCcchhhccC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 85 (173)
.+|+++|.+|+|||||+++|.+.... ......+++...........+..+.+|||||.+. +......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~-~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA-IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 58999999999999999998766532 1233344444333322222347899999999876 22234456789
Q ss_pred CCEEEEEEECCChhhhh--cHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHH
Q 030686 86 GQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~ 162 (173)
+|++++|+|+.++.+.. .+..|+. .. +.|+++|+||+|+.+.. ....++ ...++ .++++||++|.|+.+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~---~~--~~piilv~NK~D~~~~~--~~~~~~-~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILR---KS--NKPVILVVNKVDGPDEE--ADAYEF-YSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH---Hc--CCcEEEEEECccCccch--hhHHHH-HhcCCCCCEEEEeeCCCCHHH
Confidence 99999999998753322 2223333 22 78999999999975522 122233 34455 489999999999999
Q ss_pred HHHHHHH
Q 030686 163 PFLYLAR 169 (173)
Q Consensus 163 ~~~~i~~ 169 (173)
+++++.+
T Consensus 153 l~~~I~~ 159 (435)
T PRK00093 153 LLDAILE 159 (435)
T ss_pred HHHHHHh
Confidence 9999876
No 190
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.88 E-value=9.2e-22 Score=154.25 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=103.8
Q ss_pred cCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc------chhhc--cCCCEEEE
Q 030686 20 GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAII 91 (173)
Q Consensus 20 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~~~~i~ 91 (173)
|.+|+|||||+|++.+..... ....|++...........+..+++|||||+.++... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v--~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTV--GNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCee--cCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999987665432 334455555444333333456899999999877654 33343 37899999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|+|+++.+.. ..+..++.+ .+.|+++++||+|+.++. ...+...+.+..+++++++||++|+|++++++++.+.
T Consensus 79 VvDat~ler~---l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchhh---HHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 9999875421 222333333 389999999999996543 3334567778889999999999999999999999864
No 191
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=6.3e-22 Score=148.13 Aligned_cols=155 Identities=16% Similarity=0.102 Sum_probs=108.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC-cEEEEEEEeCCCcccccC----cch---hhccCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGG----LRD---GYYIHG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~----~~~---~~~~~~ 86 (173)
.|+++|.||||||||+|++...+. ...+...+|.......+.. ....+.++||||...... +.. ..+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 699999999999999999775543 3334444555544443332 234689999999753221 112 246789
Q ss_pred CEEEEEEECC---ChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHH-HHHHHHHcC--CcEEEEccCCC
Q 030686 87 QCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN--LQYYEISAKSN 157 (173)
Q Consensus 87 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~--~~~~~~S~~~~ 157 (173)
+++++|+|++ +.+.++....|+..+..+. .+.|+++|+||+|+.......+ ...+....+ ..++++||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 9999999998 4455666667777776653 4789999999999975432222 223444433 46899999999
Q ss_pred CChHHHHHHHHHHh
Q 030686 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
.|+.+++++|.+.+
T Consensus 319 ~GIdeLl~~I~~~L 332 (390)
T PRK12298 319 LGVKELCWDLMTFI 332 (390)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=1.2e-21 Score=156.99 Aligned_cols=153 Identities=23% Similarity=0.183 Sum_probs=107.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc--------cCcchhhc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~ 83 (173)
...+|+++|.+|+|||||+|+|++... .....+.|++...........+..+.+|||||.+.. ......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 347899999999999999999876543 333456677776665554444568999999997632 22334567
Q ss_pred cCCCEEEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 84 IHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
..+|++++|+|+++.. .... .|...+.. .+.|+++|+||+|+.... ....++.....-..+++||++|.|+.+
T Consensus 353 ~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~~~~~~iSA~~g~GI~e 426 (712)
T PRK09518 353 SLADAVVFVVDGQVGL--TSTDERIVRMLRR--AGKPVVLAVNKIDDQASE--YDAAEFWKLGLGEPYPISAMHGRGVGD 426 (712)
T ss_pred HhCCEEEEEEECCCCC--CHHHHHHHHHHHh--cCCCEEEEEECcccccch--hhHHHHHHcCCCCeEEEECCCCCCchH
Confidence 8999999999998642 2222 34444444 489999999999986532 112222222222467999999999999
Q ss_pred HHHHHHHHh
Q 030686 163 PFLYLARKL 171 (173)
Q Consensus 163 ~~~~i~~~i 171 (173)
+++++++.+
T Consensus 427 Ll~~i~~~l 435 (712)
T PRK09518 427 LLDEALDSL 435 (712)
T ss_pred HHHHHHHhc
Confidence 999998765
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.88 E-value=1.4e-21 Score=148.81 Aligned_cols=154 Identities=20% Similarity=0.184 Sum_probs=103.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCC--ccc---------------------------ccccceeEEEEEEEEEecCc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
..+.++|+++|.+++|||||+++|+... ... ......|++.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3567999999999999999999987321 100 00113466666666666667
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc------
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------ 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------ 134 (173)
.+.+.+|||||++.|.......+..+|++++|+|++++.+......+...+.......|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 78999999999988876555567889999999999873222222222222222222346899999999975211
Q ss_pred cHHHHHHHHHcC-----CcEEEEccCCCCChHHH
Q 030686 135 KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (173)
Q Consensus 135 ~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 163 (173)
..+..+++...+ .+++++||++|+|+.+.
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 122234444444 56999999999999863
No 194
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=2.4e-21 Score=128.42 Aligned_cols=150 Identities=18% Similarity=0.218 Sum_probs=102.7
Q ss_pred EEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcc-------hhhccCCCEE
Q 030686 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR-------DGYYIHGQCA 89 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~-------~~~~~~~~~~ 89 (173)
++|++|+|||||++++....... .....+.+......... .....+.+||+||...+.... ..+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 57999999999999977554331 12222223222222222 125689999999987655433 3477899999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-----HHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++|+|+.+..+..... +...... .+.|+++|+||+|+......... .......+.+++++|++++.|+.+++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 9999999876555443 3333333 38999999999998764433322 12333456889999999999999999
Q ss_pred HHHHHHh
Q 030686 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+++.+.+
T Consensus 157 ~~l~~~~ 163 (163)
T cd00880 157 EALIEAL 163 (163)
T ss_pred HHHHhhC
Confidence 9988753
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2e-21 Score=155.87 Aligned_cols=156 Identities=16% Similarity=0.202 Sum_probs=103.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc-cCc----------ch
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGL----------RD 80 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-~~~----------~~ 80 (173)
..+||+++|.+|+|||||+++++..... ...+..|++.......+...+..+.+|||||..+. +.. ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~-~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERA-VVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc-ccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 3589999999999999999998876532 11223334444333222223345779999996421 111 12
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHH-HHHH----cCCcEEEEccC
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRK----KNLQYYEISAK 155 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~S~~ 155 (173)
.+++.+|++++|+|++++.+.+... ++..+.. .++|+++|+||+|+.+......... +... ...+.+++||+
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 3467899999999999887766654 3334433 3899999999999975332222221 1111 13567999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030686 156 SNYNFEKPFLYLARKL 171 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i 171 (173)
+|.|+.++++.+.+..
T Consensus 605 tg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 605 TGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988754
No 196
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.87 E-value=2.8e-21 Score=147.22 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=104.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhh--CCcccc---------------------------cccceeEEEEEEEEEecCc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 60 (173)
+.+.++|+++|..++|||||+++|+. +..... .....|.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45679999999999999999999875 222110 0112245555444555666
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-c-----
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-Q----- 133 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~----- 133 (173)
.+.+.+||+||++.|.......+..+|++++|+|++++++..... .+...+.......|+++++||+|+.+. .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 789999999999988766666678999999999999885432211 122222333334579999999999641 1
Q ss_pred ccHHHHHHHHHcC-----CcEEEEccCCCCChHH
Q 030686 134 VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (173)
Q Consensus 134 ~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 162 (173)
...+..+++...+ ++++++||++|.|+.+
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 1122334555444 5799999999999986
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=145.43 Aligned_cols=152 Identities=18% Similarity=0.076 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc---------Ccchhhcc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYI 84 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~~~~ 84 (173)
..|+++|.||+|||||.|+|++.+. .....+.|+|++.........+..|.++||+|.+... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 5799999999999999999776654 4456788888888776666666779999999966332 23455688
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
+||++++|+|....-+- ....+..+.. ..++|+++|+||+|-... .....++....--..+++||..|.|+.+++
T Consensus 83 eADvilfvVD~~~Git~--~D~~ia~~Lr-~~~kpviLvvNK~D~~~~--e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 83 EADVILFVVDGREGITP--ADEEIAKILR-RSKKPVILVVNKIDNLKA--EELAYEFYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred hCCEEEEEEeCCCCCCH--HHHHHHHHHH-hcCCCEEEEEEcccCchh--hhhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence 99999999999874321 1222222222 237999999999997622 222345555555679999999999999999
Q ss_pred HHHHHHh
Q 030686 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+++...+
T Consensus 158 d~v~~~l 164 (444)
T COG1160 158 DAVLELL 164 (444)
T ss_pred HHHHhhc
Confidence 9998764
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=8.6e-21 Score=124.62 Aligned_cols=158 Identities=21% Similarity=0.216 Sum_probs=120.1
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCccc--------cc----ccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK--------KY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
.+.....||++.|+.++||||+++++....... .+ ..|...++..... +....+.+++||||+++
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHHH
Confidence 345667999999999999999999965443210 00 1122222222222 23468899999999999
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHc--CCcEEEEc
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEIS 153 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~S 153 (173)
+.+|.-+++++.++++++|.+.+..+ .....++.+.... ..|++|+.||.|+.+....+...+..... ..+.++.+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeee
Confidence 99999999999999999999988776 4444444444442 29999999999999998888877766665 78999999
Q ss_pred cCCCCChHHHHHHHHHH
Q 030686 154 AKSNYNFEKPFLYLARK 170 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~ 170 (173)
+..+++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999999887764
No 199
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.87 E-value=3.9e-21 Score=142.81 Aligned_cols=152 Identities=17% Similarity=0.192 Sum_probs=116.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhhc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 83 (173)
.-+|++++|.||+|||||+|.|+ +......+.-.|+|++.++..+.-.++++.+.||+|..+.... ....+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~-~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALL-GRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHh-cCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 35899999999999999999955 5555667888899999999988889999999999998755443 34457
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
.+||.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.|+......... ....+.+.+.+|+++++|++.+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHHH
Confidence 899999999999986221221 1111 23358999999999999876543322 2223447899999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
.+.|.+.+
T Consensus 368 ~~~i~~~~ 375 (454)
T COG0486 368 REAIKQLF 375 (454)
T ss_pred HHHHHHHH
Confidence 99987754
No 200
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=132.69 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=112.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 82 (173)
.+.--|+++|.||+|||||+|++++.+.. ..++...+|+..+..........+.|+||||..+.+.. ....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~Kis-IvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceE-eecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 45577999999999999999997766643 44666667777776666667889999999996544332 2334
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc-HHHHHHHHHc--CCcEEEEccCCCCC
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKK--NLQYYEISAKSNYN 159 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~--~~~~~~~S~~~~~~ 159 (173)
+..+|++++|+|++..-.- .....++.++. .+.|+++++||+|....... ....+.+... ....+++||+.|.|
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 6789999999999874321 11223344444 36899999999998775542 3333333222 24689999999999
Q ss_pred hHHHHHHHHHHh
Q 030686 160 FEKPFLYLARKL 171 (173)
Q Consensus 160 i~~~~~~i~~~i 171 (173)
++.+.+.+...+
T Consensus 160 ~~~L~~~i~~~L 171 (298)
T COG1159 160 VDTLLEIIKEYL 171 (298)
T ss_pred HHHHHHHHHHhC
Confidence 999999988765
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.87 E-value=2e-20 Score=146.43 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=114.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh--CCccccc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
-.+|+++|..++|||||+++|+. +.+.... ..+.|.+.......+....+.+.+|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999885 3332221 234566766666666667899999999999999999
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHHHHH-------HcCCc
Q 030686 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHR-------KKNLQ 148 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~-------~~~~~ 148 (173)
+..+++.+|++++|+|+.+....+. ..++...... ++|.++++||+|+.+..... +...+.. ...++
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence 9999999999999999987643322 2223333333 88999999999987643322 2222221 12467
Q ss_pred EEEEccCCCC----------ChHHHHHHHHHHh
Q 030686 149 YYEISAKSNY----------NFEKPFLYLARKL 171 (173)
Q Consensus 149 ~~~~S~~~~~----------~i~~~~~~i~~~i 171 (173)
++++||++|. ++..+++.+.+.+
T Consensus 162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred EEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 8999999998 5888998887765
No 202
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.86 E-value=1.1e-20 Score=126.53 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc----------ccCcchhhcc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDGYYI 84 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~~ 84 (173)
.|+++|.+|+|||||++.+..+.......++.+.+........+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 479999999999999999886665555566666655444443332 899999999533 2233333444
Q ss_pred ---CCCEEEEEEECCChhhh--hcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH----HHHHHH--HcCCcEEEEc
Q 030686 85 ---HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHR--KKNLQYYEIS 153 (173)
Q Consensus 85 ---~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~--~~~~~~~~~S 153 (173)
..+++++++|.....+. ..+..|+. .. +.|+++++||+|+........ ...... ....+++++|
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 35788899998865321 22223333 22 689999999999854322111 112222 3456889999
Q ss_pred cCCCCChHHHHHHHHHHh
Q 030686 154 AKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i 171 (173)
++++.++.+++++|.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
No 203
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.86 E-value=1e-23 Score=138.15 Aligned_cols=161 Identities=34% Similarity=0.537 Sum_probs=138.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcE-EEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.-+|++|+|.-|+|||+++.+++...+...+..++|.++.-.....+..+ +++++||+.|++++..+++-|++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 34899999999999999999999999999999999999887776666554 58999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccccccH---HHHHHHHHcCC-cEEEEccCCCCChH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNL-QYYEISAKSNYNFE 161 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~~~S~~~~~~i~ 161 (173)
+|||++....|+...+|...+.... .-+|+++..||||.......+ ...++.+++++ .++++|++.+.+++
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence 9999999999999999999886643 246788999999998754433 23467777775 69999999999999
Q ss_pred HHHHHHHHHhh
Q 030686 162 KPFLYLARKLA 172 (173)
Q Consensus 162 ~~~~~i~~~i~ 172 (173)
|.-+.+.+.++
T Consensus 184 Ea~r~lVe~~l 194 (229)
T KOG4423|consen 184 EAQRELVEKIL 194 (229)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=1.3e-20 Score=130.90 Aligned_cols=146 Identities=20% Similarity=0.201 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcc-cc-c---------------------------ccceeEEEEEEEEEecCcEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KK-Y---------------------------EPTIGVEVHPLDFFTNCGKIRFY 65 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~-~~-~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (173)
||+++|.+|+|||||+++|+...-. .. . ....|++.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999998643210 00 0 00134444444444444566889
Q ss_pred EEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc------cHHHH
Q 030686 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV 139 (173)
Q Consensus 66 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~ 139 (173)
+|||||++.+.......+..+|++++|+|++++..-+.. .....+ ......++++|+||+|+.+... ..+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~-~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYIL-SLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHH-HHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 999999988766566678899999999999875322211 111222 2222235788899999865211 11223
Q ss_pred HHHHHcC---CcEEEEccCCCCChHH
Q 030686 140 TFHRKKN---LQYYEISAKSNYNFEK 162 (173)
Q Consensus 140 ~~~~~~~---~~~~~~S~~~~~~i~~ 162 (173)
++....+ .+++++||++|.|+.+
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 3444555 3589999999999874
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.85 E-value=1.9e-20 Score=146.69 Aligned_cols=155 Identities=16% Similarity=0.226 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CCccccc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 79 (173)
.+|+++|+.++|||||+++|+. +.+.... ....|.+.......+....+.+.+|||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 3799999999999999999875 3322211 1123455555444455567899999999999998888
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc---cHHHHHHHH-------HcCCcE
Q 030686 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHR-------KKNLQY 149 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~ 149 (173)
..+++.+|++++|+|+.+... .....++..+... ++|+++|+||+|+.+... ..+...++. +..+++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 899999999999999987532 2234455555554 889999999999865332 222233332 235679
Q ss_pred EEEccCCCC----------ChHHHHHHHHHHh
Q 030686 150 YEISAKSNY----------NFEKPFLYLARKL 171 (173)
Q Consensus 150 ~~~S~~~~~----------~i~~~~~~i~~~i 171 (173)
+++||++|. |+..+|+.+.+.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999996 7999999998765
No 206
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=4.1e-20 Score=130.18 Aligned_cols=150 Identities=15% Similarity=0.063 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-------cchhhccCCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ 87 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~~ 87 (173)
+|+++|.+|+|||||+++|.+..... ....+++.......+......+++||+||..+... ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v--~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV--AAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc--cCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999977554221 11111222222222222457899999999754331 1234688999
Q ss_pred EEEEEEECCChh-hhhcHHHHHHH--------------------------------------------------------
Q 030686 88 CAIIMFDVTARL-TYKNVPTWHRD-------------------------------------------------------- 110 (173)
Q Consensus 88 ~~i~v~d~~~~~-s~~~~~~~~~~-------------------------------------------------------- 110 (173)
++++|+|+++++ +.+.+.+.+..
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 23222222211
Q ss_pred ----------HhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 111 ----------LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 111 ----------~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+.......|+++|+||+|+.... +...++. ...++++||+++.|++++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~---~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE---ELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHH---HHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 01111246999999999986432 2223433 34689999999999999999998754
No 207
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.85 E-value=3.7e-20 Score=144.58 Aligned_cols=151 Identities=23% Similarity=0.275 Sum_probs=100.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccc----cccceeEEEEEEEEEe------------cCcEEEEEEEeCCCccccc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT------------NCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~G~~~~~ 76 (173)
..-|+++|.+++|||||+++|....+... .+.+.|.+........ ......+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34689999999999999999876655322 1222333222111100 0001238899999999999
Q ss_pred CcchhhccCCCEEEEEEECCCh---hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--------------cHHH-
Q 030686 77 GLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQ- 138 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~~~- 138 (173)
.++..+++.+|++++|+|+++. .+++.+ ..+.. .++|+++++||+|+.+... ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEAL----NILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 9999999999999999999973 333322 22222 3889999999999864100 0000
Q ss_pred -----------HHHHH--------------HcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 139 -----------VTFHR--------------KKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 139 -----------~~~~~--------------~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.++.. ....+++++||++|+|++++++++..
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 00110 01367899999999999999998864
No 208
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=8.2e-20 Score=125.27 Aligned_cols=145 Identities=16% Similarity=0.060 Sum_probs=97.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcc--------------cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
.++|+++|..++|||||+++|+..... .......|.+.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999998753100 001113345555545555556678899999999887776
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc-c----HHHHHHHHHc-----CC
Q 030686 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-K----AKQVTFHRKK-----NL 147 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~----~~~~~~~~~~-----~~ 147 (173)
....+..+|++++|+|+...-.-+ ....+..+... ++| +++++||+|+..... . .+..+..... ++
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v 158 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNT 158 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence 777788999999999998653222 12233333333 676 788999999864221 1 1222333332 36
Q ss_pred cEEEEccCCCCCh
Q 030686 148 QYYEISAKSNYNF 160 (173)
Q Consensus 148 ~~~~~S~~~~~~i 160 (173)
+++++||++|.++
T Consensus 159 ~iipiSa~~g~n~ 171 (195)
T cd01884 159 PIVRGSALKALEG 171 (195)
T ss_pred eEEEeeCccccCC
Confidence 7999999999985
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=3.8e-20 Score=140.03 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=102.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc------ceeEEEEEEE--------------E--EecC------cEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP------TIGVEVHPLD--------------F--FTNC------GKI 62 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~------~~~~~~~~~~--------------~--~~~~------~~~ 62 (173)
.+.++|+++|.+++|||||+++|.. .+...+.+ |....+.... . .++. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~-~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTG-VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhC-eecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 4679999999999999999999643 22111111 1111111000 0 0011 146
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc----HHH
Q 030686 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQ 138 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~ 138 (173)
.+.+||+||+++|...+......+|++++|+|++++.........+..+ ......|+++++||+|+.+.... .+.
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 7999999999999888888888899999999999653111222222222 22223468999999999753221 122
Q ss_pred HHHHHHc---CCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 139 VTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 139 ~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.++.... +++++++||++|+|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 2333332 57899999999999999999998753
No 210
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.83 E-value=2.7e-19 Score=124.81 Aligned_cols=156 Identities=14% Similarity=0.197 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccC-----cchhhccCCCE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGG-----LRDGYYIHGQC 88 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~~~ 88 (173)
||+++|+.+|||||+.+.+..+. ++......|.|...-...+ ....+.+.+||+||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999855444 4333445555544433333 24567999999999875543 45667899999
Q ss_pred EEEEEECCChh---hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH--------HHHHHHHHcC---CcEEEEcc
Q 030686 89 AIIMFDVTARL---TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--------KQVTFHRKKN---LQYYEISA 154 (173)
Q Consensus 89 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--------~~~~~~~~~~---~~~~~~S~ 154 (173)
+|||+|+.+.+ .+..+...+..+.+..|+..+-++++|+|+....... ...+.+...+ +.++.+|.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999999443 4445556677777888999999999999986532222 2223333444 77899998
Q ss_pred CCCCChHHHHHHHHHHhh
Q 030686 155 KSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~ 172 (173)
.+ +.+-+.|..+.+.++
T Consensus 160 ~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp TS-THHHHHHHHHHHTTS
T ss_pred cC-cHHHHHHHHHHHHHc
Confidence 88 689999998888664
No 211
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.83 E-value=2.4e-20 Score=141.05 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=122.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|..|+||||||-+++...+++..++... ...+...+....++..+.|++..++-+.....-++++|++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 5679999999999999999999999988776555432 11222333345567899999866655555566789999999
Q ss_pred EEEECCChhhhhcHHH-HHHHHhhhc---CCCCEEEEEeCCCCcccccc--H-HHHHHHHHcC--CcEEEEccCCCCChH
Q 030686 91 IMFDVTARLTYKNVPT-WHRDLCRVC---ENIPIVLCGNKVDVKNRQVK--A-KQVTFHRKKN--LQYYEISAKSNYNFE 161 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~-~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~--~-~~~~~~~~~~--~~~~~~S~~~~~~i~ 161 (173)
++|+.+++++++.++. |+..+++.. .++|+|+|+||+|+...... + +...+...+. -..++|||++..++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 9999999999999984 999999887 68999999999998763322 1 1222333322 346899999999999
Q ss_pred HHHHHHHHHhhC
Q 030686 162 KPFLYLARKLAG 173 (173)
Q Consensus 162 ~~~~~i~~~i~~ 173 (173)
|+|....+.++|
T Consensus 165 e~fYyaqKaVih 176 (625)
T KOG1707|consen 165 ELFYYAQKAVIH 176 (625)
T ss_pred hhhhhhhheeec
Confidence 999887776653
No 212
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=3.3e-19 Score=132.30 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=114.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-----------cch
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-----------LRD 80 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~~ 80 (173)
..+||+++|.||+|||||+|++++ .......+..|+|++.+...++.....+.++||+|..+-.. ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilg-eeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILG-EERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhcc-CceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 469999999999999999999664 44555677889999999888887788999999999543222 233
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccH-HHH-HHHHH----cCCcEEEEc
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-KQV-TFHRK----KNLQYYEIS 153 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~-~~~-~~~~~----~~~~~~~~S 153 (173)
..+..++++++|+|++.+-+-++.+ ....+.+ .+.++++|+||.|+.+.. ... +.. .+-+. ...+.+.+|
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 3567899999999999876555543 2223333 388999999999987641 222 111 22222 246789999
Q ss_pred cCCCCChHHHHHHHHHH
Q 030686 154 AKSNYNFEKPFLYLARK 170 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~ 170 (173)
|++|.++.++|+++...
T Consensus 333 A~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 333 ALTGQGLDKLFEAIKEI 349 (444)
T ss_pred ecCCCChHHHHHHHHHH
Confidence 99999999999998753
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.83 E-value=1.7e-19 Score=136.49 Aligned_cols=162 Identities=16% Similarity=0.112 Sum_probs=101.0
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccc--cceeEEEEE----EEEE----------------ec--C---
Q 030686 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHP----LDFF----------------TN--C--- 59 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~----~~~~----------------~~--~--- 59 (173)
+....+.++|+++|..++|||||+.+|.. .+..... ...|.+... .... .+ +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~-~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTG-VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhC-eecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence 34556689999999999999999998643 2211111 011222211 0100 00 0
Q ss_pred -cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-
Q 030686 60 -GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA- 136 (173)
Q Consensus 60 -~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~- 136 (173)
....+.+||+||++.|..........+|++++|+|++++. ..+. ...+..+.. ....|+++|+||+|+.+.....
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~-~~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDI-IGIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHH-cCCCcEEEEEEeeccccchhHHH
Confidence 1367899999999887665555556679999999999643 1121 112222222 2234689999999997633221
Q ss_pred ---HHHHHHHH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 137 ---KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 137 ---~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+...++.. .+.+++++||++|.|+++++++|.+.+
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 12233322 247899999999999999999998754
No 214
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=1.2e-19 Score=116.66 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=90.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc----cccCcchhhccCCCEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----KFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~~~~i 90 (173)
||+++|+.|+|||||+++|.+... .+..|..+.+.. .++||||.- .+..-......++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999655433 334444322221 347999931 11111222345899999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHHHHHHHHHcCC-cEEEEccCCCCChHHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++.|++++.+.-. ..+.... +.|++-|+||+|+.. ....+...++.+.-|+ ..|++|+.+|+|++++.++|.
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEecCCCCCccCC-----chhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 9999998753222 1222222 689999999999993 3333334456666565 479999999999999999874
No 215
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=6e-20 Score=128.47 Aligned_cols=146 Identities=19% Similarity=0.153 Sum_probs=94.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC--Ccc---------------------------cccccceeEEEEEEEEEecCcEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG--EFE---------------------------KKYEPTIGVEVHPLDFFTNCGKIRFY 65 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (173)
+|+++|..++|||||+++|+.. ... .......|++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999998632 110 00011234555555555555678999
Q ss_pred EEeCCCcccccCcchhhccCCCEEEEEEECCChhh---h---hcHHHHHHHHhhhcCCCCEEEEEeCCCCccc----ccc
Q 030686 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y---KNVPTWHRDLCRVCENIPIVLCGNKVDVKNR----QVK 135 (173)
Q Consensus 66 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~ 135 (173)
+|||||+..+...+...+..+|++++|+|++++.. + ......+... ......|+++++||+|+... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCCCeEEEEEEccccccccccHHHH
Confidence 99999998777666667788999999999998521 1 1112212222 22234689999999999732 111
Q ss_pred H----HHHHHHHHc-----CCcEEEEccCCCCChH
Q 030686 136 A----KQVTFHRKK-----NLQYYEISAKSNYNFE 161 (173)
Q Consensus 136 ~----~~~~~~~~~-----~~~~~~~S~~~~~~i~ 161 (173)
. +........ +.+++++||++|.|+.
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 111223333 3569999999999986
No 216
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.2e-20 Score=120.40 Aligned_cols=155 Identities=18% Similarity=0.295 Sum_probs=123.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.-|++++|-.|+|||||++.|..++.. .+.||...+.....+ .+.+|+.+|.+|+...+..|..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 4568999999999999999996665544 457887777776666 77899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHH------HHHHHcC-----------CcEEEE
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKN-----------LQYYEI 152 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~~-----------~~~~~~ 152 (173)
.+|+.+.+.+.+.+..++.+.... .++|+++.+||+|.+......+.. ++....+ ...+.|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 999999999999888777775543 699999999999998865433332 2222111 236789
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030686 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
|...+.+..+.|.|+.+.+
T Consensus 174 si~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEccCccceeeeehhhhc
Confidence 9999999999998877643
No 217
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.83 E-value=2.3e-19 Score=125.03 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=100.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccc-----------c------ccceeEEEEEEEE--Ee---cCcEEEEEEEeCCCc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------Y------EPTIGVEVHPLDF--FT---NCGKIRFYCWDTAGQ 72 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~-----------~------~~~~~~~~~~~~~--~~---~~~~~~~~~~D~~G~ 72 (173)
+|+++|+.++|||||+++|+....... + ....|.+...... .. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999886432211 0 0112233222222 11 345689999999999
Q ss_pred ccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-------cc-------cHHH
Q 030686 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------QV-------KAKQ 138 (173)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~-------~~~~ 138 (173)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+... .. ..+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~ 158 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEV 158 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence 9998888888999999999999987654432 233343333 36899999999997521 10 0111
Q ss_pred HHHHHHcCC-----------cEEEEccCCCCChH--------HHHHHHHHHh
Q 030686 139 VTFHRKKNL-----------QYYEISAKSNYNFE--------KPFLYLARKL 171 (173)
Q Consensus 139 ~~~~~~~~~-----------~~~~~S~~~~~~i~--------~~~~~i~~~i 171 (173)
...+...+. .+++.|++.+.++. ++++.|.+.+
T Consensus 159 n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 159 NNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 122222222 26788999888776 7777776654
No 218
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.82 E-value=5.8e-19 Score=138.29 Aligned_cols=153 Identities=24% Similarity=0.287 Sum_probs=98.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccc----cccceeEEEEEEEEEe--cCcE-----E-----EEEEEeCCCccc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT--NCGK-----I-----RFYCWDTAGQEK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~-----~-----~~~~~D~~G~~~ 74 (173)
.+...|+++|.+++|||||++++.+...... ...+.|.+........ .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4456799999999999999999764432211 1123333222211100 0111 1 268999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCC---hhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-----------------
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----------------- 134 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------------- 134 (173)
|..++...+..+|++++|+|+++ +.++..+ ..+.. .++|+++++||+|+.....
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI----NILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 99888888899999999999997 3443333 22222 3889999999999852100
Q ss_pred -cH-------HHHHHHHH---------------cCCcEEEEccCCCCChHHHHHHHHH
Q 030686 135 -KA-------KQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 135 -~~-------~~~~~~~~---------------~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.. +....... ...+++++||++|+|+.++++.+..
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 00011111 1357899999999999999988764
No 219
>PRK12735 elongation factor Tu; Reviewed
Probab=99.82 E-value=5.1e-19 Score=133.52 Aligned_cols=158 Identities=12% Similarity=0.036 Sum_probs=104.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC-----C--c-------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG-----E--F-------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~-----~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|.+++|||||+++|+.. . . ........|.+.......+......+.++||||++.|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 356799999999999999999998752 0 0 0011123455555544455555668899999999887
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEE-EEEeCCCCcccccc-----HHHHHHHHHc----
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVK-----AKQVTFHRKK---- 145 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~-----~~~~~~~~~~---- 145 (173)
.......+..+|++++|+|+.+....+. ...+..+.. .++|.+ +++||+|+.+.... .+...+....
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 7666667788999999999987532221 223333332 277855 57999999742211 1223344443
Q ss_pred -CCcEEEEccCCCC----------ChHHHHHHHHHH
Q 030686 146 -NLQYYEISAKSNY----------NFEKPFLYLARK 170 (173)
Q Consensus 146 -~~~~~~~S~~~~~----------~i~~~~~~i~~~ 170 (173)
+++++++|+++|. ++.++++.|.+.
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 3678999999984 677888877654
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.82 E-value=4.8e-19 Score=133.58 Aligned_cols=159 Identities=15% Similarity=0.082 Sum_probs=106.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcc--------------cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|..++|||||+++|+..... .......|.+.......+......+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 456799999999999999999998742100 011113455555555555556678899999999988
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccccc-----HHHHHHHHHcC---
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN--- 146 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~--- 146 (173)
.......+..+|++++|+|+.....-+. ...+..+... ++| +++++||+|+.+.... .+..++....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 7666666788999999999987532222 2223333333 778 6788999998743211 12223333333
Q ss_pred --CcEEEEccCCCC--------ChHHHHHHHHHHh
Q 030686 147 --LQYYEISAKSNY--------NFEKPFLYLARKL 171 (173)
Q Consensus 147 --~~~~~~S~~~~~--------~i~~~~~~i~~~i 171 (173)
++++++||++|. ++.++++.+.+.+
T Consensus 166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 579999999983 5788888876653
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.9e-19 Score=137.35 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=116.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc------Ccchhhcc-
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGYYI- 84 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~- 84 (173)
+..+|+++|+||+|||||.|++.+.+. ......|+|.+..+......+..+++.|+||.-... ...+.|+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 356799999999999999999766554 234566788888888777777789999999953332 23344443
Q ss_pred -CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 85 -HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 85 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
..|+++-|+|+++.+.--.+. -++.+. +.|++++.|++|..++. ...+..++.+..+++++++||++|.|+++
T Consensus 80 ~~~D~ivnVvDAtnLeRnLylt---lQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLT---LQLLEL--GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHH---HHHHHc--CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 469999999999876433332 223333 89999999999997744 45567788899999999999999999999
Q ss_pred HHHHHHHH
Q 030686 163 PFLYLARK 170 (173)
Q Consensus 163 ~~~~i~~~ 170 (173)
+++.+.+.
T Consensus 155 l~~~i~~~ 162 (653)
T COG0370 155 LKRAIIEL 162 (653)
T ss_pred HHHHHHHh
Confidence 99988753
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=4.9e-19 Score=133.65 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=102.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC-----Cc---------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG-----EF---------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|..++|||||+++|+.. .. ........|.+.......++.....+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 466799999999999999999998632 00 0011122455555555556666778999999999988
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEE-EEEeCCCCccccc-c----HHHHHHHHHcC---
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV-K----AKQVTFHRKKN--- 146 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~-~----~~~~~~~~~~~--- 146 (173)
..........+|++++|+|+.+....+. ...+..+... ++|.+ +++||+|+.+... . .+..+++...+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 7655556678899999999987432222 1222333332 67755 6899999875322 1 12334454443
Q ss_pred --CcEEEEccCCCC--------ChHHHHHHHH
Q 030686 147 --LQYYEISAKSNY--------NFEKPFLYLA 168 (173)
Q Consensus 147 --~~~~~~S~~~~~--------~i~~~~~~i~ 168 (173)
++++++|+.++. ++.++++++.
T Consensus 166 ~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~ 197 (394)
T TIGR00485 166 DDTPIIRGSALKALEGDAEWEAKILELMDAVD 197 (394)
T ss_pred cCccEEECccccccccCCchhHhHHHHHHHHH
Confidence 789999999875 3445555554
No 223
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=8.5e-19 Score=122.66 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCccccccc-----------------------ceeEEEEEE-------------EEEec
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----------------------TIGVEVHPL-------------DFFTN 58 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~~ 58 (173)
||+++|..++|||||++++..+.+...... ..|.+.... ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999887655321110 011110000 00112
Q ss_pred CcEEEEEEEeCCCcccccCcchhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH
Q 030686 59 CGKIRFYCWDTAGQEKFGGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (173)
Q Consensus 59 ~~~~~~~~~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (173)
.....+.++|+||+++|.......+. .+|++++|+|+..+..-. ...++..+... ++|+++|+||+|+.++....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDLAPANILQ 157 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccccCHHHHH
Confidence 23467899999999988655444443 689999999998654322 12333444433 78999999999986543222
Q ss_pred HHH----HHHH--------------------------HcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 137 KQV----TFHR--------------------------KKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 137 ~~~----~~~~--------------------------~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+.. ++.. ...+++|.+|+.+|+|++++.+.|..
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 211 1211 11247899999999999999987654
No 224
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=1.6e-18 Score=136.48 Aligned_cols=151 Identities=13% Similarity=0.032 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC---CcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
-|+++|..++|||||+++|.+- .++... ..|.+........ ......+.+||+||+++|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~--~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEK--KRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcc--cCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 5789999999999999997642 222221 1233333221112 112346899999999998777777788999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccccc----HHHHHHHHHcC---CcEEEEccCCCCChHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKKN---LQYYEISAKSNYNFEK 162 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~----~~~~~~~~~~~---~~~~~~S~~~~~~i~~ 162 (173)
+|+|+++...-+. ...+..+... ++| +++|+||+|+.+.... .+..++....+ .+++++|+++|.|+++
T Consensus 80 LVVda~eg~~~qT-~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 80 LVVACDDGVMAQT-REHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9999987421111 1122222222 556 5799999999753221 12223433333 6899999999999999
Q ss_pred HHHHHHHH
Q 030686 163 PFLYLARK 170 (173)
Q Consensus 163 ~~~~i~~~ 170 (173)
++++|.+.
T Consensus 157 L~~~L~~~ 164 (614)
T PRK10512 157 LREHLLQL 164 (614)
T ss_pred HHHHHHHh
Confidence 99998764
No 225
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=5.4e-19 Score=124.70 Aligned_cols=132 Identities=18% Similarity=0.165 Sum_probs=89.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcc--------c-----cc---ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFE--------K-----KY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
+|+++|..|+|||||+++++...-. . .+ ....+.+.......+......+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999998753110 0 00 112233333333444446688999999999999888
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcE
Q 030686 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 149 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (173)
+..+++.+|++++|+|+.+..+. ....++..+... ++|+++++||+|+.......-..++....+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~ 148 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDI 148 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCe
Confidence 88899999999999999986432 223444555443 889999999999986543333334444444433
No 226
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.81 E-value=1.2e-18 Score=124.88 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC--cccc---------------cc---cceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------------YE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~--~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
.+|+++|.+|+|||||+++++... .... +. ...+.+.......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999987421 1000 00 011223333333455567899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
+|......+++.+|++++|+|+++..... ...++..... .++|+++++||+|+.....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRDP 140 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCCH
Confidence 88877777889999999999998753222 2233333333 3889999999999876543
No 227
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=5.6e-18 Score=113.70 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=108.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc----------ccccCcchh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLRDG 81 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~~ 81 (173)
....|+++|.+|+|||||+|++++.+--.....|+|.|...-.+..++. +.+.|.||. +....+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 4568999999999999999998876755566778888887766665544 889999993 233344455
Q ss_pred hccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHHHc----CCc--EEE
Q 030686 82 YYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQ--YYE 151 (173)
Q Consensus 82 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~----~~~--~~~ 151 (173)
|+.. -.++++++|+..+....+. .+++.+... ++|+++++||+|-.......... ..+... ... ++.
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~ 176 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVL 176 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEE
Confidence 5543 4688889998865432221 344444444 99999999999977644333222 222222 222 788
Q ss_pred EccCCCCChHHHHHHHHHHh
Q 030686 152 ISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i 171 (173)
.|+..+.|++++.+.|.+.+
T Consensus 177 ~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 177 FSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EecccccCHHHHHHHHHHHh
Confidence 99999999999999988765
No 228
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=1.6e-18 Score=122.41 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=107.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc------------cCc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF------------GGL 78 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------------~~~ 78 (173)
.+.++|+++|+||+|||||.|.+++.+..+. .....+|+......+......+.|+||||.-.. ...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~v-S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV-SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccc-cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4568999999999999999999888776655 444456777777777777889999999993211 122
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHH
Q 030686 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRK 144 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~ 144 (173)
....+..||.+++|+|+++....-. ...+..+..+ .++|-++|.||.|..... ......++...
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 3345678999999999997432111 1233334333 478989999999965311 11001111111
Q ss_pred c-----------------CCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 145 K-----------------NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 145 ~-----------------~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
. --.+|.+||++|+|++++.++|..+.
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 1 11378999999999999999998764
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.79 E-value=5.1e-18 Score=128.59 Aligned_cols=147 Identities=15% Similarity=0.071 Sum_probs=98.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCc--------------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|.+++|||||+++|+...- ........|.+.......+......+.+.||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 45679999999999999999999875311 0011112455555544455556678889999999887
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccccc-----HHHHHHHHHcC---
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN--- 146 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~--- 146 (173)
.......+..+|++++|+|+.....-+. ...+..+... ++| +++++||+|+.+.... .+...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~ 165 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG 165 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7666677789999999999986532222 2223333333 778 7789999999753221 12223333332
Q ss_pred --CcEEEEccCCCCC
Q 030686 147 --LQYYEISAKSNYN 159 (173)
Q Consensus 147 --~~~~~~S~~~~~~ 159 (173)
.+++++|+.+|.+
T Consensus 166 ~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 166 DDIPIVSGSALLALE 180 (409)
T ss_pred CcceEEEcchhhccc
Confidence 6799999998874
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.78 E-value=6.4e-18 Score=117.85 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=78.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCc--cccc------------ccceeEEEE--EEEEEec--------CcEEEEEEEeCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEF--EKKY------------EPTIGVEVH--PLDFFTN--------CGKIRFYCWDTA 70 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~--~~~~------------~~~~~~~~~--~~~~~~~--------~~~~~~~~~D~~ 70 (173)
+|+++|..++|||||+++|+...- .... ....|.+.. ....... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 789999999999999999874321 1000 001122221 1222222 347889999999
Q ss_pred CcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030686 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
|++.|......+++.+|++++|+|+.++.+.+.. ..+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCcc
Confidence 9999999999999999999999999987544432 22233322 378999999999975
No 231
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=118.43 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCc----chhh---ccCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGL----RDGY---YIHG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~----~~~~---~~~~ 86 (173)
.+.++|.||+|||||++.+...+. ...+..-+|..+....+. ++...+.+-|+||.-+...+ -..| +..+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 578999999999999999665443 223333334433322222 23334899999996544333 3334 4568
Q ss_pred CEEEEEEECCCh---hhhhcHHHHHHHH---hhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcC-CcEEEEccCCCCC
Q 030686 87 QCAIIMFDVTAR---LTYKNVPTWHRDL---CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYN 159 (173)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~---~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 159 (173)
..++||+|++.. +-++.++.+..++ .+...+.|.++|+||+|+++.+... ..++++... ..++++||+.+++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcCCCcEEEeeeccccc
Confidence 999999999987 5555555544444 4445689999999999997433221 345555554 3489999999999
Q ss_pred hHHHHHHHHHH
Q 030686 160 FEKPFLYLARK 170 (173)
Q Consensus 160 i~~~~~~i~~~ 170 (173)
+.++++.|.+.
T Consensus 355 l~~ll~~lr~~ 365 (366)
T KOG1489|consen 355 LEELLNGLREL 365 (366)
T ss_pred hHHHHHHHhhc
Confidence 99999988654
No 232
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.78 E-value=1.7e-17 Score=114.30 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=93.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeE---EEEEEEEEecCcEEEEEEEeCCCcccccCcchhh-----cc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----YI 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~-----~~ 84 (173)
++||+++|.+|+|||||+|.+++.........+.+. +.....+.. .....+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999998775443322222221 111111111 122468999999976433333333 56
Q ss_pred CCCEEEEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccccc---------cHH----HH----HHHHHc-
Q 030686 85 HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQV---------KAK----QV----TFHRKK- 145 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~----~~----~~~~~~- 145 (173)
++|+++++.+.. +... ..++..+.+. +.|+++|+||+|+..... ..+ .. ......
T Consensus 80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISSTR----FSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCCC----CCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 789988874422 2222 2455666554 789999999999843111 111 11 111121
Q ss_pred --CCcEEEEccC--CCCChHHHHHHHHHHhh
Q 030686 146 --NLQYYEISAK--SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 146 --~~~~~~~S~~--~~~~i~~~~~~i~~~i~ 172 (173)
...+|.+|+. .+.++..+.+.+...+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 2368899998 67899999999988764
No 233
>PLN03126 Elongation factor Tu; Provisional
Probab=99.78 E-value=8.2e-18 Score=128.91 Aligned_cols=147 Identities=14% Similarity=0.060 Sum_probs=99.3
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCC------ccc--------ccccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE------FEK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
...+.++|+++|.+++|||||+++|+... ... ......|.+.......++.....+.++|+||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 45667999999999999999999988421 110 1122345555544444555567889999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc-cH----HHHHHHHHc---
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-KA----KQVTFHRKK--- 145 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~----~~~~~~~~~--- 145 (173)
|.......+..+|++++|+|+.+...-+. ..++..+... ++| +++++||+|+.+.+. .+ +...+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 87777777889999999999987643222 2233333333 778 778999999975321 11 222333332
Q ss_pred --CCcEEEEccCCCC
Q 030686 146 --NLQYYEISAKSNY 158 (173)
Q Consensus 146 --~~~~~~~S~~~~~ 158 (173)
+.+++++|+.++.
T Consensus 234 ~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 234 GDDIPIISGSALLAL 248 (478)
T ss_pred cCcceEEEEEccccc
Confidence 5679999998875
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.77 E-value=1.1e-17 Score=127.68 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=102.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCC--ccc---------------------------ccccceeEEEEEEEEEecCc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
..+.++|+++|..++|||||+.+|+... ... ......|.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 4567999999999999999999987421 000 00112244444444455667
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhh-------cHHHHHHHHhhhcCCCC-EEEEEeCCCCccc
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 132 (173)
...+.++|+||+++|.......+..+|++++|+|+++.. ++ .....+..... .++| +++++||+|+.+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDATTP 160 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCCch
Confidence 789999999999999988888999999999999998742 21 12222222222 2665 7889999998631
Q ss_pred c--------ccHHHHHHHHHcC-----CcEEEEccCCCCChHH
Q 030686 133 Q--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (173)
Q Consensus 133 ~--------~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 162 (173)
. ...+...++.+.+ ++++++|+++|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 1223445555554 6799999999999853
No 235
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=119.35 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=109.9
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc--cccCc------
Q 030686 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--KFGGL------ 78 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--~~~~~------ 78 (173)
+..+.....|+|.|.||+|||||++.+.+.+ ++. .+.+-+|-......++.....++++||||.= .....
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEv-A~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~q 239 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEV-APYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQ 239 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCC-Ccc-CCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHH
Confidence 3445566889999999999999999965544 332 4444344444455666677799999999931 11111
Q ss_pred chhhccC-CCEEEEEEECCChh--hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHHHcCCcEEEEcc
Q 030686 79 RDGYYIH-GQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISA 154 (173)
Q Consensus 79 ~~~~~~~-~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~S~ 154 (173)
.-..+++ .++++|++|.+... +.+.-..++..+..... .|+++|+||+|..+.....+.. ......+.....+++
T Consensus 240 Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~ 318 (346)
T COG1084 240 AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISA 318 (346)
T ss_pred HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceee
Confidence 1112222 68999999999643 55555667888887765 8999999999998755444433 344445556788999
Q ss_pred CCCCChHHHHHHHHHH
Q 030686 155 KSNYNFEKPFLYLARK 170 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~ 170 (173)
..+.+++.+-+.+...
T Consensus 319 ~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 319 TKGCGLDKLREEVRKT 334 (346)
T ss_pred eehhhHHHHHHHHHHH
Confidence 9999988877766554
No 236
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.77 E-value=1.5e-17 Score=119.73 Aligned_cols=140 Identities=17% Similarity=0.289 Sum_probs=89.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccc----------cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-----
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----- 77 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----- 77 (173)
.++|+++|.+|+|||||+|+|+....... ..++.+.+.....+..++..+.+.+|||||......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999887765432 234444445445555566778999999999433211
Q ss_pred ---------------------cchhhcc--CCCEEEEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcccc
Q 030686 78 ---------------------LRDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (173)
Q Consensus 78 ---------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (173)
.+...+. .+|+++|+++.+.. .+... ...+..+. .++|+++|+||+|+....
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHH
Confidence 1112333 36777777776642 12222 22333333 378999999999985422
Q ss_pred ----ccHHHHHHHHHcCCcEEEEccCC
Q 030686 134 ----VKAKQVTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~S~~~ 156 (173)
......+.+..+++.++......
T Consensus 160 e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 160 ELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 22233466777888888766543
No 237
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.77 E-value=7.8e-18 Score=127.43 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC--ccc------------cc-----------------ccceeEEEEEEEEEecCcEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGE--FEK------------KY-----------------EPTIGVEVHPLDFFTNCGKI 62 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~--~~~------------~~-----------------~~~~~~~~~~~~~~~~~~~~ 62 (173)
+||+++|..++|||||+++|+... ... .. ....|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999986321 110 00 00113334333334444567
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--c----H
Q 030686 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--K----A 136 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~----~ 136 (173)
.+.++||||++.|.......+..+|++++|+|+.....-+....+ .+.......++++++||+|+.+... . .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~--~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS--YIASLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH--HHHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence 899999999998876666678899999999999866432222221 1222222345889999999865221 1 1
Q ss_pred HHHHHHHHcC---CcEEEEccCCCCChHH
Q 030686 137 KQVTFHRKKN---LQYYEISAKSNYNFEK 162 (173)
Q Consensus 137 ~~~~~~~~~~---~~~~~~S~~~~~~i~~ 162 (173)
+...+....+ ++++++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1112333333 5699999999999875
No 238
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=2.1e-17 Score=121.15 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=105.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcc--cccccceeEEEEEEEEEecCcEEEEEEEeCCCccc--ccCcchhh----
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGY---- 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~---- 82 (173)
..-..|.++|..|+|||||+|++...... .....|...+..... +. .+..+.+.||.|.-+ ...+...|
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~--l~-~g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIE--LG-DGRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEE--eC-CCceEEEecCccCcccCChHHHHHHHHHH
Confidence 34578999999999999999997744332 222234333333333 33 256788999999432 11222222
Q ss_pred --ccCCCEEEEEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCC
Q 030686 83 --YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (173)
Q Consensus 83 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (173)
...+|+++.|+|++++.....+....+.+.+. ..+.|+++|.||+|+....... ........ ..+.+||++|.|
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~--~~~~~~~~-~~v~iSA~~~~g 343 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEIL--AELERGSP-NPVFISAKTGEG 343 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhh--hhhhhcCC-CeEEEEeccCcC
Confidence 35799999999999997777776666666654 3578999999999976544311 11111122 689999999999
Q ss_pred hHHHHHHHHHHhh
Q 030686 160 FEKPFLYLARKLA 172 (173)
Q Consensus 160 i~~~~~~i~~~i~ 172 (173)
++.+++.|...+.
T Consensus 344 l~~L~~~i~~~l~ 356 (411)
T COG2262 344 LDLLRERIIELLS 356 (411)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 239
>PRK00049 elongation factor Tu; Reviewed
Probab=99.76 E-value=3.7e-17 Score=123.38 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=104.5
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcc--------------cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|..++|||||+++|+..... .......|.+.......+......+.++||||+..|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356799999999999999999998752110 011113455655555555555678899999999887
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEE-EEEeCCCCcccccc-----HHHHHHHHHc----
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVK-----AKQVTFHRKK---- 145 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~-----~~~~~~~~~~---- 145 (173)
.......+..+|++++|+|+..+..-+ ....+..+... ++|.+ +++||+|+.+.... .+...+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 766666778999999999998753222 22233333333 78875 58999999742211 1222333332
Q ss_pred -CCcEEEEccCCCC----------ChHHHHHHHHH
Q 030686 146 -NLQYYEISAKSNY----------NFEKPFLYLAR 169 (173)
Q Consensus 146 -~~~~~~~S~~~~~----------~i~~~~~~i~~ 169 (173)
+++++++|++++. ++.++++.|.+
T Consensus 166 ~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~ 200 (396)
T PRK00049 166 DDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS 200 (396)
T ss_pred cCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence 4689999999875 46677777765
No 240
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.76 E-value=1.1e-17 Score=120.02 Aligned_cols=115 Identities=24% Similarity=0.238 Sum_probs=80.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh--CCccc--------------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
+|+++|.+++|||||+++++. +.... ......|++.......+......+.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999864 21100 00112244444444444445678999999999888888
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030686 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
+..+++.+|++++|+|+.+...-+. ...+..+... ++|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 8889999999999999987542222 2333334333 7899999999999764
No 241
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.76 E-value=1.2e-17 Score=120.27 Aligned_cols=143 Identities=14% Similarity=0.143 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccc------c----------ceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYE------P----------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
+|+++|.+|+|||||+++++......... . ..+.+.......+....+.+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999987432110000 0 0011111112223335578999999999888777
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEE--EEccCC
Q 030686 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY--EISAKS 156 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~S~~~ 156 (173)
+..+++.+|++++|+|+++....... ..+..+... ++|.++++||+|+...........+....+..++ .+...+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~~--~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADEA--GIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 88889999999999999976543322 222333333 7899999999999875433333344444454443 333444
Q ss_pred CCCh
Q 030686 157 NYNF 160 (173)
Q Consensus 157 ~~~i 160 (173)
+.++
T Consensus 158 ~~~~ 161 (268)
T cd04170 158 GDDF 161 (268)
T ss_pred CCce
Confidence 4443
No 242
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.76 E-value=9.8e-18 Score=128.82 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=95.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCC--cccc-----------cc------------------cceeEEEEEEEEEec
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK-----------YE------------------PTIGVEVHPLDFFTN 58 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~-----------~~------------------~~~~~~~~~~~~~~~ 58 (173)
..+.++|+++|..++|||||+++|+... .... .. ...|.+.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3567999999999999999999987432 1100 00 011233333333344
Q ss_pred CcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cH
Q 030686 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA 136 (173)
Q Consensus 59 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~ 136 (173)
.....+.++||||++.|.......+..+|++++|+|+.....-+....+ .+.......|+++++||+|+.+... ..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLGIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhCCCceEEEEEeeccccchhHHHH
Confidence 4567889999999988865555557899999999999865322222211 1222222347899999999874211 11
Q ss_pred HHH----HHHHHc----CCcEEEEccCCCCChHHH
Q 030686 137 KQV----TFHRKK----NLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 137 ~~~----~~~~~~----~~~~~~~S~~~~~~i~~~ 163 (173)
+.. .+.... ..+++++||++|+|+.++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 111 222222 467999999999998763
No 243
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.75 E-value=3.6e-17 Score=124.85 Aligned_cols=151 Identities=20% Similarity=0.242 Sum_probs=99.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhh--CCccc---------------------------ccccceeEEEEEEEEEecCc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
..+.++|+++|..++|||||+.+|+. +.... ......|.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 35679999999999999999999875 11110 00112244544444455667
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hh---hcHHHHHHHHhhhcCCCC-EEEEEeCCCCcc--
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY---KNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-- 131 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~-- 131 (173)
...+.++|+||+++|.......+..+|++++|+|+.... .+ ......+..+... ++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVN 161 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccch
Confidence 789999999999999888888889999999999998753 11 1122222223222 666 678999999532
Q ss_pred --cc----ccHHHHHHHHHc-----CCcEEEEccCCCCChHH
Q 030686 132 --RQ----VKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 132 --~~----~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
.. ...+..+..... +++++++|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11 112222333332 36799999999999864
No 244
>PLN03127 Elongation factor Tu; Provisional
Probab=99.75 E-value=6.9e-17 Score=123.18 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=102.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC-----Ccc---------cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG-----EFE---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|..++|||||+++|..- ... .......|++.......+......+.++||||+++|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456799999999999999999997521 100 001122455666555556666678999999999887
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccccH-----HHHHHHHHc----
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK---- 145 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~-----~~~~~~~~~---- 145 (173)
..........+|++++|+|+.+...-+. ...+..+... ++| +++++||+|+.+..... +..++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~ 214 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG 214 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6666666678999999999986532221 2223333333 788 57889999997522111 111222221
Q ss_pred -CCcEEEEccC---CCCC-------hHHHHHHHHHH
Q 030686 146 -NLQYYEISAK---SNYN-------FEKPFLYLARK 170 (173)
Q Consensus 146 -~~~~~~~S~~---~~~~-------i~~~~~~i~~~ 170 (173)
.++++++|+. ++.| +.++++++.+.
T Consensus 215 ~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 215 DEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 3678888876 4544 67888877654
No 245
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=4.1e-17 Score=123.04 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=119.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCc--cc-----------ccccceeEEEEEEEE---EecCcEEEEEEEeCCCccccc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEF--EK-----------KYEPTIGVEVHPLDF---FTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~--~~-----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~G~~~~~ 76 (173)
--++.|+-....|||||..+|+.-.- .. ......|+|....+. ..++..+.+.++|||||-.|+
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 35789999999999999999874211 00 111233455444332 223566999999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHHHHHHcCCcEEEEc
Q 030686 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~S 153 (173)
.--..-+..++++++|+|++..-..+....++..+.. +..+|.|+||+|++...... ...+.......+.+.+|
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vS 216 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVS 216 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEE
Confidence 8888888999999999999998777777776666655 88899999999998755433 33455556667899999
Q ss_pred cCCCCChHHHHHHHHHHh
Q 030686 154 AKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i 171 (173)
|++|.|+.+++++|++.+
T Consensus 217 AK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 217 AKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eccCccHHHHHHHHHhhC
Confidence 999999999999999876
No 246
>PRK13351 elongation factor G; Reviewed
Probab=99.74 E-value=4.1e-17 Score=130.95 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=82.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcc-------------cccc---cceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-------------KKYE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
+..+|+++|..++|||||+++|+...-. ..+. ...+.+.......+......+.+|||||+..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 4579999999999999999998742110 0000 01122222222223335678999999999998
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
...+..+++.+|++++|+|+++..+.+....| ..+... ++|+++++||+|+..
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~--~~p~iiviNK~D~~~ 139 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY--GIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc--CCCEEEEEECCCCCC
Confidence 88889999999999999999987655543333 334333 889999999999864
No 247
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.74 E-value=5.5e-17 Score=129.06 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=94.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCc--ccc-----------cc---c---------------ceeEEEEEEEEEec
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK-----------YE---P---------------TIGVEVHPLDFFTN 58 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~-----------~~---~---------------~~~~~~~~~~~~~~ 58 (173)
..+.++|+++|.+++|||||+++|+...- ... .. . ..|.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34568999999999999999999875321 100 00 0 11233333233344
Q ss_pred CcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc--ccccH
Q 030686 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVKA 136 (173)
Q Consensus 59 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~ 136 (173)
.....+.++||||++.|.......+..+|++++|+|+..+..-+.... +..+.. ....|+++++||+|+.+ .....
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~-~~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASL-LGIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHH-hCCCeEEEEEEecccccchhHHHH
Confidence 455678899999998876555556789999999999986543222221 112222 22357889999999864 11111
Q ss_pred ----HHHHHHHHcC---CcEEEEccCCCCChHH
Q 030686 137 ----KQVTFHRKKN---LQYYEISAKSNYNFEK 162 (173)
Q Consensus 137 ----~~~~~~~~~~---~~~~~~S~~~~~~i~~ 162 (173)
+..++....+ .+++++||++|.|+.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1122333434 4689999999999874
No 248
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.73 E-value=5.9e-17 Score=125.64 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=87.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh--CCccc----------c--------cccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK----------K--------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~--~~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
+..+|+++|.+++|||||+++|+. +.... . .....|.+.......+....+.+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 457999999999999999999863 11100 0 001113333333334445678899999999
Q ss_pred cccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC
Q 030686 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (173)
+..|......+++.+|++++|+|+++.-... ...++..... .++|+++++||+|+.......-..++....+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~--~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL--RDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh--cCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 9998887777889999999999998753221 2333333333 38999999999998765433222333333443
No 249
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2e-16 Score=119.50 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=107.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC---cEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
+..=|.++|+...|||||+..+...+... ...-|.|...--+.+.. ..-.+.|+|||||+.|..+...-..-+|.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~--~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccc--ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 34568999999999999999966544322 23334554443333332 23578999999999999999998899999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccccccHHHHHHHHHcC---------CcEEEEccCCCC
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN---------LQYYEISAKSNY 158 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~ 158 (173)
+++|+++++.-- .+..+.+.+. ..++|+++++||+|.++.++.....++. +++ ..++++||++|+
T Consensus 82 aILVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~-~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 82 AILVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQ-EYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHH-HcCCCHhhcCCceEEEEeeccCCC
Confidence 999999998532 1222333332 1499999999999998654433322222 222 568999999999
Q ss_pred ChHHHHHHHHH
Q 030686 159 NFEKPFLYLAR 169 (173)
Q Consensus 159 ~i~~~~~~i~~ 169 (173)
|++++++.++-
T Consensus 157 Gi~eLL~~ill 167 (509)
T COG0532 157 GIDELLELILL 167 (509)
T ss_pred CHHHHHHHHHH
Confidence 99999988764
No 250
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=6.2e-16 Score=110.31 Aligned_cols=152 Identities=18% Similarity=0.100 Sum_probs=104.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-------CcchhhccC
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLRDGYYIH 85 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~ 85 (173)
-.+++++|.|++|||||++.| ++..++. ....-+|.......++.++..+++.|+||.-... ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~L-Tnt~sev-a~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKL-TNTKSEV-ADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHH-hCCCccc-cccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 468999999999999999994 4544443 2233356666666677788999999999843221 234456889
Q ss_pred CCEEEEEEECCChhh-hhcHHHHHHH------------------------------------------------------
Q 030686 86 GQCAIIMFDVTARLT-YKNVPTWHRD------------------------------------------------------ 110 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s-~~~~~~~~~~------------------------------------------------------ 110 (173)
||++++|+|+..... .+.+.+++..
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999996543 2222222221
Q ss_pred ------------HhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 111 ------------LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 111 ------------~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+......+|.++|.||+|+...+ +...+.+.. ..+.+||..+.|++++.+.|.+.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e---~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE---ELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH---HHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 11111246999999999998733 233333333 789999999999999999998764
No 251
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=3.3e-16 Score=116.63 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC--ccc-----------ccccceeEEEEEEEE----Ee-cCcEEEEEEEeCCCcccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGE--FEK-----------KYEPTIGVEVHPLDF----FT-NCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~--~~~-----------~~~~~~~~~~~~~~~----~~-~~~~~~~~~~D~~G~~~~ 75 (173)
.+..++-.-..|||||..|++... ... ......|+|.....+ .. ++..+.++++|||||-.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 467888889999999999987521 111 011122444433322 22 457799999999999988
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC---cEEEE
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI 152 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~ 152 (173)
.--...-+..|.++++|+|++..-..+.+.+.+..+.. +.-++.|+||+||+...+..-..+...-.++ ..+.+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~ 166 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV 166 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence 87777777889999999999998777777777777766 8889999999999987665555555555554 47899
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030686 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|.|+++++++|.+.+
T Consensus 167 SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 167 SAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred ecccCCCHHHHHHHHHhhC
Confidence 9999999999999999876
No 252
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.1e-16 Score=116.05 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=105.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC--Cccc---------------------------ccccceeEEEEEEEEEecCc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
..+.++++++|+..+|||||+.+|+.. .... ......|.|...-...++..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 456799999999999999999997742 1110 00112255555555566667
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---h--hhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-c--
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---T--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-R-- 132 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~-- 132 (173)
.+.++++|+||+..|-........+||++|+|+|+.+.+ + ..........+.....-..+++++||+|+.+ +
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 789999999999988888888888999999999999874 1 2233344444444443445889999999986 1
Q ss_pred ---cccHHHHHHHHHc-----CCcEEEEccCCCCChHH
Q 030686 133 ---QVKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 133 ---~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
+...+...+.+.. +++|+++|+..|+|+.+
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 1122222333333 36699999999999864
No 253
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.70 E-value=7.1e-16 Score=112.75 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=54.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcc------cccccceeEEEEEEEEE---------------ecC-cEEEEEEEeCCCc-
Q 030686 16 LVIVGDGGTGKTTFVKRHLTGEFE------KKYEPTIGVEVHPLDFF---------------TNC-GKIRFYCWDTAGQ- 72 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~D~~G~- 72 (173)
|+++|.+++|||||++++...... ....|+.|......... .++ ..+++++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999998766532 12233444333211100 112 3368999999997
Q ss_pred ---ccccCcchhh---ccCCCEEEEEEECC
Q 030686 73 ---EKFGGLRDGY---YIHGQCAIIMFDVT 96 (173)
Q Consensus 73 ---~~~~~~~~~~---~~~~~~~i~v~d~~ 96 (173)
++++.+...+ ++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4455554554 88999999999997
No 254
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=7.3e-17 Score=120.40 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=110.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-C--------cchhhc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-G--------LRDGYY 83 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~--------~~~~~~ 83 (173)
.++|+++|+||+|||||+|.|. +.......|-.|+|++.++..++-.++++.+.||+|..+-. . ..+..+
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~-~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALS-REDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHh-cCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 4899999999999999999955 55556678889999999999888888999999999976511 1 233347
Q ss_pred cCCCEEEEEEECCC--hhhhhcHHHHHHHHhhhc-------CCCCEEEEEeCCCCccccccHH--HHHHHHH---cCC-c
Q 030686 84 IHGQCAIIMFDVTA--RLTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNRQVKAK--QVTFHRK---KNL-Q 148 (173)
Q Consensus 84 ~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~---~~~-~ 148 (173)
..+|++++|+|+.. -++...+...+......+ ...|++++.||.|+........ ...+... ... .
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i 426 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPI 426 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccce
Confidence 78999999999943 333223223333332221 1368999999999876421111 1111111 122 3
Q ss_pred EEEEccCCCCChHHHHHHHHHHh
Q 030686 149 YYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 149 ~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+.++|+++++|+..+..++.+.+
T Consensus 427 ~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 427 VVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred EEEeeechhhhHHHHHHHHHHHH
Confidence 45699999999999999988765
No 255
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.70 E-value=2e-16 Score=122.71 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=82.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh-CCcccc-------------------cccceeEEEEEEEEEecCcEEEEEEEeCC
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT-GEFEKK-------------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (173)
.+..+|+++|.+++|||||+++++. ...... .....|.+.......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3467999999999999999999763 211100 00122344444444555567899999999
Q ss_pred CcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030686 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
|+..|.......++.+|++++|+|+++.-. .....++..... .++|+++++||+|+...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccCC
Confidence 999888777778899999999999987421 112333333333 37899999999998753
No 256
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=6.2e-16 Score=106.51 Aligned_cols=156 Identities=12% Similarity=-0.000 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------c---chhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------L---RDGY 82 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~---~~~~ 82 (173)
++|+++|.+|+|||||+|.+++...........+.+...........+..+.++||||...... + ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999886654322211223333222222222456899999999654321 1 1112
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcC---CCCEEEEEeCCCCcccc--------ccHHHHHHHHHcCCcEEE
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQ--------VKAKQVTFHRKKNLQYYE 151 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~ 151 (173)
..+.|++++|+++... +- .-...++.+.+.+. -.++++++|+.|..... .......+....+-.++.
T Consensus 81 ~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 4578999999998862 21 11233444444322 35788999999965422 122334455555656655
Q ss_pred Ecc-----CCCCChHHHHHHHHHHh
Q 030686 152 ISA-----KSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~-----~~~~~i~~~~~~i~~~i 171 (173)
.+. ..+.++.++++.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHH
Confidence 554 45678999998887655
No 257
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=1.6e-16 Score=100.56 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=66.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---------cchhhccC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIH 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~~~~~~~ 85 (173)
+|+++|.+|+|||||+|+|+...... .....+.+.......+......+.++||||...... .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK-VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE-ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc-ccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 68999999999999999988643211 122222233222222122445667999999643211 12223478
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeC
Q 030686 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK 126 (173)
+|++++|+|..++.. +.....+..+. .+.|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 999999999877422 22334444453 48999999998
No 258
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.70 E-value=3e-16 Score=119.71 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=100.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCc---ccccc--c--ceeEEEEEE----------EE-EecC------------
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF---EKKYE--P--TIGVEVHPL----------DF-FTNC------------ 59 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~--~--~~~~~~~~~----------~~-~~~~------------ 59 (173)
....++|.++|....|||||+.+|.+-.. .+... - ..|...... .+ ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 35579999999999999999999664211 11100 0 111111100 00 0000
Q ss_pred ----cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCCh-hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 60 ----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 60 ----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
....+.++|+||++.|.......+..+|++++|+|+.++ ...+. ...+ .+.....-.|+++++||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl-~i~~~lgi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHL-AAVEIMKLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHH-HHHHHcCCCcEEEEEecccccCHHH
Confidence 024689999999998877777777899999999999874 22122 1222 2222222346899999999975332
Q ss_pred cHHH----HHHHHH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 135 KAKQ----VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 135 ~~~~----~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
..+. .++... ...+++++||++|+|++++++.|.+.+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 2222 222222 357899999999999999999988543
No 259
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.69 E-value=1.4e-16 Score=106.88 Aligned_cols=116 Identities=17% Similarity=0.263 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccCcchh---hccCCCE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDG---YYIHGQC 88 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~---~~~~~~~ 88 (173)
.-.|+++|+.|+|||+|..+|..+...+.+.+. .... .... ....-.+.++|+||+++.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 356899999999999999999988665543333 2121 1111 223457899999999988864333 4778999
Q ss_pred EEEEEECCC-hhhhhcHHH-HHHHHhhh---cCCCCEEEEEeCCCCccc
Q 030686 89 AIIMFDVTA-RLTYKNVPT-WHRDLCRV---CENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 89 ~i~v~d~~~-~~s~~~~~~-~~~~~~~~---~~~~p~ivv~nK~Dl~~~ 132 (173)
+|||+|.+. ...+.+... ++..+... ....|++|+.||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999984 334444443 33333222 247899999999998653
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.69 E-value=7.2e-16 Score=123.72 Aligned_cols=117 Identities=21% Similarity=0.162 Sum_probs=81.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC--Cccc--cc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
+..+|+++|.+++|||||+++|+.. .... .. ....|++.......+......+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 4578999999999999999998742 1100 00 012234444333334445678999999999888
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
...+...++.+|++++|+|+.+....+.. ..+..+... ++|.++++||+|+..
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 77888889999999999999876433322 233333333 789999999999874
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.69 E-value=4e-16 Score=125.16 Aligned_cols=143 Identities=19% Similarity=0.128 Sum_probs=93.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC--Cccc--cc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
+-.+|+++|.+++|||||+++|+.. .... .. ....|++.......+......+.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 3468999999999999999998632 1100 00 012344444444444445678999999999988
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC----cEEE
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYE 151 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~ 151 (173)
...+..+++.+|++++|+|+.+....+.. ..+..+... ++|+++++||+|+...........+....+. ..++
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~--~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY--EVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLP 165 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 88888889999999999999976544332 233334333 7899999999999864422222233333332 1355
Q ss_pred EccCCC
Q 030686 152 ISAKSN 157 (173)
Q Consensus 152 ~S~~~~ 157 (173)
+|+..+
T Consensus 166 is~~~~ 171 (689)
T TIGR00484 166 IGAEDN 171 (689)
T ss_pred cccCCC
Confidence 665544
No 262
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=3.5e-16 Score=109.42 Aligned_cols=160 Identities=14% Similarity=0.222 Sum_probs=105.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc-------ccCcchhh
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-------FGGLRDGY 82 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~ 82 (173)
..++++|+++|..|+||||++|+|..+...+...-..+.+...... .....-.+.+||+||-+. ++.....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~-~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR-LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-hhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 4567999999999999999999988655433221111222211111 112335789999999654 55567778
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc---------cccHHHHHHHHH---------
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR---------QVKAKQVTFHRK--------- 144 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~~~~--------- 144 (173)
+.+.|+++++.+..++.---+. ++++.+....-+.++++++|.+|.... .......++..+
T Consensus 115 l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDE-DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhhccEEEEeccCCCccccCCH-HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988633332 345555555456899999999996532 111111121111
Q ss_pred -cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 145 -KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 145 -~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.--+++..+...+.|++++..++++.+
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 123577888899999999999998765
No 263
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.9e-15 Score=114.26 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=106.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEE--EEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+..-|-++|....|||||+..|.....- ..+.-|+|...- .+.++ .+-.++|.|||||..|..++..-..-+|.+
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VA--A~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVA--AGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCcee--hhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 4456889999999999999996544332 133334443322 23333 447899999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHH------Hc--CCcEEEEccCCCCCh
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHR------KK--NLQYYEISAKSNYNF 160 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~--~~~~~~~S~~~~~~i 160 (173)
++|+.++|.-- .+..+.|.... .++|+++++||+|.+...+..-..++.. .+ ..+.+++||++|+|+
T Consensus 229 VLVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 229 VLVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 99999998531 22334444432 5999999999999876443222223322 12 257899999999999
Q ss_pred HHHHHHHHH
Q 030686 161 EKPFLYLAR 169 (173)
Q Consensus 161 ~~~~~~i~~ 169 (173)
+.+-+++.-
T Consensus 305 ~~L~eaill 313 (683)
T KOG1145|consen 305 DLLEEAILL 313 (683)
T ss_pred HHHHHHHHH
Confidence 999988764
No 264
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.9e-15 Score=108.86 Aligned_cols=149 Identities=20% Similarity=0.236 Sum_probs=105.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCc-------------cc------------------ccccceeEEEEEEEEEecC
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-------------EK------------------KYEPTIGVEVHPLDFFTNC 59 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~~ 59 (173)
...+|++.+|...-||||||.||+.+.. .. ......|+|++.-...+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3468999999999999999999886311 00 0111235666655555566
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc--c----c
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--R----Q 133 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~----~ 133 (173)
...+|.+-|||||++|..+...-...||++|+++|+... ..+-.+-...+.....-..+++++||+||.+ + +
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHH
Confidence 778999999999999999888888999999999999543 2222223333333333456899999999987 2 2
Q ss_pred ccHHHHHHHHHcCC---cEEEEccCCCCChH
Q 030686 134 VKAKQVTFHRKKNL---QYYEISAKSNYNFE 161 (173)
Q Consensus 134 ~~~~~~~~~~~~~~---~~~~~S~~~~~~i~ 161 (173)
...+-..++.+.+. .++++||..|+|+.
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 22233467777664 68999999999875
No 265
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.63 E-value=9.7e-15 Score=104.98 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEec-CcEEEEEEEeCCCccc----ccCcchhh---ccC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEK----FGGLRDGY---YIH 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~----~~~~~~~~---~~~ 85 (173)
-|.++|.|++|||||++.+...+.. ..|+ -+|..+.-..+. ...-.|.+-|+||.-+ ..-+-..| +..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYp---FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYP---FTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCc---cccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 3778999999999999996644321 1111 122222111111 3445789999999432 22344444 446
Q ss_pred CCEEEEEEECCChh---hhhcHHHHHHHHhh---hcCCCCEEEEEeCCCCcccccc-HHH-HHHHHHcCCcEE-EEccCC
Q 030686 86 GQCAIIMFDVTARL---TYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNRQVK-AKQ-VTFHRKKNLQYY-EISAKS 156 (173)
Q Consensus 86 ~~~~i~v~d~~~~~---s~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~-~~~-~~~~~~~~~~~~-~~S~~~ 156 (173)
+.++++|+|++..+ -.++......++.. ...++|.++|+||+|+...... +.. ..+....+...+ ++|+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 89999999999543 23333333444444 4468999999999996543322 222 233333343322 299999
Q ss_pred CCChHHHHHHHHHHh
Q 030686 157 NYNFEKPFLYLARKL 171 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i 171 (173)
++|++++...+.+.+
T Consensus 318 ~~g~~~L~~~~~~~l 332 (369)
T COG0536 318 REGLDELLRALAELL 332 (369)
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999998887754
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.62 E-value=3.3e-14 Score=110.38 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=70.2
Q ss_pred EEEEEEeCCCccccc-C----cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--
Q 030686 62 IRFYCWDTAGQEKFG-G----LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~-~----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-- 134 (173)
..+.+.||||..... . .....+..+|++++|+|.....+..+ ....+.+.+...+.|+++|+||+|+.++..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 356789999975421 1 23346889999999999987433222 223344444322369999999999865322
Q ss_pred cHHHHHHHH----Hc---CCcEEEEccCCCCChHHHHHHHHH
Q 030686 135 KAKQVTFHR----KK---NLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 135 ~~~~~~~~~----~~---~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.....++.. .. ...++++||+.|.|++++++.|.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 222223221 22 236899999999999999999876
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.62 E-value=6.3e-15 Score=118.22 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=74.4
Q ss_pred EcCCCCCHHHHHHHHhhCCcc--c--cc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhh
Q 030686 19 VGDGGTGKTTFVKRHLTGEFE--K--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (173)
Q Consensus 19 ~G~~~~GKStli~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 82 (173)
+|++++|||||+++|+...-. . .. ....|.+.......+....+.+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999998532110 0 00 0012233332223333356889999999998877777888
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
+..+|++++|+|++......... .+..+.. .++|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET-VWRQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH--cCCCEEEEEECCCCCC
Confidence 99999999999999865444332 2233333 3789999999999764
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.61 E-value=9.4e-15 Score=117.32 Aligned_cols=143 Identities=19% Similarity=0.135 Sum_probs=92.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh--CCcccc--c------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--Y------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~--~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
+-.+|+++|.+++|||||+++|+. +..... . ....|++.......+......+.++||||+..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 356999999999999999999873 211100 0 012344444433444445678999999999877
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC----cEEE
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYE 151 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~ 151 (173)
.......+..+|++++|+|+...-..+.. ..+..+... ++|.++++||+|+.+........++....+. ..++
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~~--~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADKY--KVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLP 165 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEec
Confidence 66666778899999999998876443332 223334343 7899999999999865433322333333332 2356
Q ss_pred EccCCC
Q 030686 152 ISAKSN 157 (173)
Q Consensus 152 ~S~~~~ 157 (173)
+|+..+
T Consensus 166 isa~~~ 171 (693)
T PRK00007 166 IGAEDD 171 (693)
T ss_pred CccCCc
Confidence 666554
No 269
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.60 E-value=5.5e-14 Score=105.78 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccc-cc-----ccceeEEEEEEEE---------------Eec-CcEEEEEEEeCCC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLDF---------------FTN-CGKIRFYCWDTAG 71 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~-----~~~~~~~~~~~~~---------------~~~-~~~~~~~~~D~~G 71 (173)
++|+++|.||+|||||+++|....... .+ .|..|........ ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999987665432 11 1222221110000 001 1236789999999
Q ss_pred c----ccccCcchhh---ccCCCEEEEEEECC
Q 030686 72 Q----EKFGGLRDGY---YIHGQCAIIMFDVT 96 (173)
Q Consensus 72 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 96 (173)
. .....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3334444455 88999999999996
No 270
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.60 E-value=4.2e-14 Score=103.93 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=79.0
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCCh----------hhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
....+.+||++|+...+..|.+++.+++++++|+|+++. ..+.+....+..+... ..++|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 467899999999999999999999999999999999974 2333333333333332 2589999999999
Q ss_pred CCcccc------------------ccHHHHHHHH-----H-----cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 128 DVKNRQ------------------VKAKQVTFHR-----K-----KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~------------------~~~~~~~~~~-----~-----~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+-.+. .......+.. . ..+-...++|.+..++..+|+.+.+.++
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~ 311 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL 311 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence 963211 1111222111 1 2234567889999999999998887664
No 271
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.59 E-value=3.8e-15 Score=92.10 Aligned_cols=136 Identities=19% Similarity=0.141 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc----hhhccCCCEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI 90 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----~~~~~~~~~~i 90 (173)
||+++|..|+|||||.+++.+... .+..|..+++... -.+||||.---...| ......+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999544332 2344444333211 136999842111111 22345789999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|-.++++++.-. ..+... -..|+|-+++|.||++....+...++..+-|. ++|++|+.++.|++++++.+..
T Consensus 70 ~v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred eeecccCccccCC-----cccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 9999998864221 122222 25679999999999976666666677777665 6899999999999999998864
No 272
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.59 E-value=8.5e-15 Score=117.93 Aligned_cols=117 Identities=25% Similarity=0.181 Sum_probs=80.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCC---------------cccc---cccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGE---------------FEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
...+|+++|+.++|||||+++|+... +... +..|............++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45799999999999999999987421 0000 11122222222223355677899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
.|.......++.+|++++|+|+.+.-..+.. ..+..... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH--cCCCEEEEEEChhccc
Confidence 9887788889999999999999875322222 22222222 3778899999999864
No 273
>PRK13768 GTPase; Provisional
Probab=99.58 E-value=1.8e-14 Score=102.73 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=71.5
Q ss_pred EEEEEeCCCcccc---cCcchhhccC-----CCEEEEEEECCChhhhhcH--HHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030686 63 RFYCWDTAGQEKF---GGLRDGYYIH-----GQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 63 ~~~~~D~~G~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
.+.+||+||+.+. +..+..+++. .+++++++|+.......+. ..|+........+.|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 6899999997653 3444444333 8899999999754432222 2233322222348999999999998764
Q ss_pred cccHHHHH----------------------------HHHHcC--CcEEEEccCCCCChHHHHHHHHHHh
Q 030686 133 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 133 ~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
....+... ..+..+ .+++++|++++.|+++++++|.+.+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 32222111 112223 5789999999999999999998765
No 274
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.58 E-value=6.9e-14 Score=103.60 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=78.8
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCCh----------hhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
....+.+||.+|+...+..|.+++.+++++++|+|+++- ..+.+....+..+... ..++|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 456789999999999999999999999999999999963 2333444444444332 3689999999999
Q ss_pred CCcccc-----------------ccHHHHH-----HHHH------cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 128 DVKNRQ-----------------VKAKQVT-----FHRK------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~-----------------~~~~~~~-----~~~~------~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+..+. ....... +... ..+-.+.++|.+..++..+|+.+...++
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~ 334 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL 334 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence 964311 1111111 1111 1234567889999999999988877654
No 275
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.55 E-value=1.9e-14 Score=107.89 Aligned_cols=166 Identities=14% Similarity=0.108 Sum_probs=112.3
Q ss_pred CCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc----cCcch
Q 030686 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLRD 80 (173)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~~ 80 (173)
..+..+.+.-.++++|.|++|||||++.+..... + ..+...++..-.....+..-..|+++||||.-.. +....
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-e-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-E-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhccccccccc-c-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH
Confidence 3455667788999999999999999998544332 2 2333333333333444555678999999994211 11111
Q ss_pred -----hhccCCCEEEEEEECCCh--hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-cHHH---H-HHHHHcCCc
Q 030686 81 -----GYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQ---V-TFHRKKNLQ 148 (173)
Q Consensus 81 -----~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~---~-~~~~~~~~~ 148 (173)
...+=-.+++|+.|++.. .|...-.+++..++..+.|.|.|+|+||+|+...+. .++. . .+....++.
T Consensus 238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~ 317 (620)
T KOG1490|consen 238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVK 317 (620)
T ss_pred HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCce
Confidence 111113578889999854 455555678888888888999999999999876332 2222 2 344445689
Q ss_pred EEEEccCCCCChHHHHHHHHHHhh
Q 030686 149 YYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 149 ~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+++.|+.+.+|+-++....+..++
T Consensus 318 v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 318 VVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred EEEecccchhceeeHHHHHHHHHH
Confidence 999999999999999888887664
No 276
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.53 E-value=1.6e-13 Score=96.08 Aligned_cols=108 Identities=14% Similarity=0.215 Sum_probs=62.2
Q ss_pred EEEEEEEeCCCcc-cccC-----cchhhccCC--CEEEEEEECCChhhhhcHHHHHHHHhhh-----cCCCCEEEEEeCC
Q 030686 61 KIRFYCWDTAGQE-KFGG-----LRDGYYIHG--QCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKV 127 (173)
Q Consensus 61 ~~~~~~~D~~G~~-~~~~-----~~~~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~ 127 (173)
...+.++|||||- .|.. +....+... -+++|++|.. .+-.... |.....-. ....|++++.||+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~--rs~~p~t-FMSNMlYAcSilyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTP--RSTSPTT-FMSNMLYACSILYKTKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCC--cCCCchh-HHHHHHHHHHHHHhccCCeEEEEecc
Confidence 4568899999964 3332 222223333 4555566644 3222222 22222221 1489999999999
Q ss_pred CCccccccHH------HHHHH-H---------------------HcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 128 DVKNRQVKAK------QVTFH-R---------------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 128 Dl~~~~~~~~------~~~~~-~---------------------~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
|+.+.....+ ..+.+ . ..++..+-+|+.+|.|++++|.++-..+
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 9987432111 11100 0 0245678999999999999999886653
No 277
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.53 E-value=8.3e-14 Score=98.83 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=78.0
Q ss_pred ccccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-cHHHHHHHHHcCCcEE
Q 030686 73 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYY 150 (173)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 150 (173)
+++..+.+.+++++|.+++|+|++++. ++..+..|+..+.. .+.|+++|+||+||.+... ..+..+.....+++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~ 101 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL 101 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence 678888899999999999999999887 88899899887654 4899999999999965332 2233344456788999
Q ss_pred EEccCCCCChHHHHHHHHH
Q 030686 151 EISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~ 169 (173)
++||++|.|++++|+.+.+
T Consensus 102 ~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEecCCchhHHHHHhhhcC
Confidence 9999999999999998764
No 278
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.4e-13 Score=92.92 Aligned_cols=151 Identities=17% Similarity=0.242 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhcc---CCCEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---HGQCAI 90 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~~~~i 90 (173)
-.|+++|+.+||||+|.-+|..+.....+.+- +.....+.. ....++++|.||+.+.+.-...+++ .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~--gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRL--GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEee--cCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 56899999999999999998888654432221 111122222 2234899999999988766666666 689999
Q ss_pred EEEECCCh-hhhhcHHHH-HHHHhhh---cCCCCEEEEEeCCCCccccccHHHH--------HHH--H------------
Q 030686 91 IMFDVTAR-LTYKNVPTW-HRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV--------TFH--R------------ 143 (173)
Q Consensus 91 ~v~d~~~~-~s~~~~~~~-~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~--------~~~--~------------ 143 (173)
||+|...- ....+...+ +..+... ....|++++-||.|+.-....+..+ ... +
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 99998742 233333333 3333332 2367899999999985321111000 000 0
Q ss_pred ------------------HcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 144 ------------------KKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 144 ------------------~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
...+.|.+.|++++ ++.++-+|+.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 01244788999988 899999998875
No 279
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.51 E-value=2.1e-13 Score=112.12 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=70.9
Q ss_pred EEEEeCCCcccccCcchhhccCCCEEEEEEECCCh---hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cc-----
Q 030686 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV----- 134 (173)
Q Consensus 64 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~----- 134 (173)
+.+|||||++.|..+....+..+|++++|+|+++. .+++. +..+... ++|+++++||+|+... ..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~----I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~ 601 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEA----INILRQY--KTPFVVAANKIDLIPGWNISEDEP 601 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHH----HHHHHHc--CCCEEEEEECCCCccccccccchh
Confidence 89999999999988877788889999999999863 33222 2233332 7899999999998531 10
Q ss_pred --------cHHH-HHH----------HHH---------------cCCcEEEEccCCCCChHHHHHHHHH
Q 030686 135 --------KAKQ-VTF----------HRK---------------KNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 135 --------~~~~-~~~----------~~~---------------~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.... .++ ..+ ..++++++||++|+|++++++++..
T Consensus 602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 0000 011 111 1357899999999999999988753
No 280
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=6.5e-13 Score=101.29 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=106.4
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhC--------------------Ccc---------cccccceeEEEEEEEEEecC
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG--------------------EFE---------KKYEPTIGVEVHPLDFFTNC 59 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~--------------------~~~---------~~~~~~~~~~~~~~~~~~~~ 59 (173)
.+...++++++|...+|||||+.+++.. +.. ..-....|++.......++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3445799999999999999999987652 100 01112335666666666777
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hhh--cHHHHHHHHhhhcCCCCEEEEEeCCCCcc-c-
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKN-R- 132 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~- 132 (173)
....+++.|.||+..|-.....-...+|++++|+|++..+ +|+ .-.+.+..+.+...-.-++|++||+|+.+ .
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence 8889999999999999888888888999999999998542 222 11234444444444445899999999976 1
Q ss_pred ----cccHHHHHHH-HHc-----CCcEEEEccCCCCChHH
Q 030686 133 ----QVKAKQVTFH-RKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 133 ----~~~~~~~~~~-~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
+.......+. +.. .+.|++||+..|+|+..
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 2222333444 222 35799999999998753
No 281
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.51 E-value=6.1e-13 Score=91.61 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=63.6
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCE--EEEEeCCCCccc--cccHH
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNR--QVKAK 137 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~--ivv~nK~Dl~~~--~~~~~ 137 (173)
....++++.|..-...... . -++.++.|+|+.+..+... .... .+.. ++++||+|+.+. .....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~-------qi~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGP-------GITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHh-------HhhhccEEEEEhhhccccccccHHH
Confidence 5667788888432222222 1 2688999999987665321 1112 2223 788999999852 11222
Q ss_pred HHHHHH--HcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 138 QVTFHR--KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 138 ~~~~~~--~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
..+..+ ..+.+++++|+++|+|+.++++++.+.++
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 223333 35688999999999999999999998653
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.51 E-value=4.5e-13 Score=95.10 Aligned_cols=120 Identities=9% Similarity=0.037 Sum_probs=70.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---c-------c
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---L-------R 79 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~-------~ 79 (173)
....++|+++|.+|+|||||+|++++...... ....+.+..............+.+|||||...... . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 34579999999999999999999886553222 11111222222222223456789999999654421 1 1
Q ss_pred hhhcc--CCCEEEEEEECCChh-hhhcHHHHHHHHhhhcC---CCCEEEEEeCCCCcc
Q 030686 80 DGYYI--HGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (173)
Q Consensus 80 ~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 131 (173)
..++. ..+++++|..++... ... -...+..+.+.+. -.++++|.||+|...
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 12332 568888887666432 111 1233444443321 246899999999754
No 283
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.50 E-value=4.6e-13 Score=96.73 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=70.2
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccc-cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc-------h
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------D 80 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~ 80 (173)
.+...++|+++|.+|+||||++|++++...... ...+.+.+....... ..+..+.++||||........ .
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~--~~G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE--ECCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 346679999999999999999999886543111 111111121112222 245789999999966432211 1
Q ss_pred hhc--cCCCEEEEEEECCChhhhhcH-HHHHHHHhhhcC---CCCEEEEEeCCCCc
Q 030686 81 GYY--IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (173)
Q Consensus 81 ~~~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~ivv~nK~Dl~ 130 (173)
.++ ...|++++|..++... +... ...+..+...+. -.++++++|++|..
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 122 2589999997665321 1111 223444443321 35689999999965
No 284
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.49 E-value=5.8e-13 Score=98.86 Aligned_cols=154 Identities=17% Similarity=0.209 Sum_probs=97.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC----Ccc----------ccccccee---EEEEEEE-------E-EecCcEEEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTG----EFE----------KKYEPTIG---VEVHPLD-------F-FTNCGKIRFYCW 67 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~----~~~----------~~~~~~~~---~~~~~~~-------~-~~~~~~~~~~~~ 67 (173)
++.|.++|+.++|||||+++|... ... +-.++..| +|..+.. + ..++...++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 588999999999999999997764 111 01233444 3333332 2 123456789999
Q ss_pred eCCCccccc--------C---------------------cchhhcc-CCCEEEEEE-ECC----ChhhhhcH-HHHHHHH
Q 030686 68 DTAGQEKFG--------G---------------------LRDGYYI-HGQCAIIMF-DVT----ARLTYKNV-PTWHRDL 111 (173)
Q Consensus 68 D~~G~~~~~--------~---------------------~~~~~~~-~~~~~i~v~-d~~----~~~s~~~~-~~~~~~~ 111 (173)
||+|...-. . -++..+. +++..++|. |.+ .++.+... ..++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999921100 0 0334455 889999988 764 22333333 3577777
Q ss_pred hhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCC--CCChHHHHHHHH
Q 030686 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLA 168 (173)
Q Consensus 112 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~i~ 168 (173)
++. ++|+++++||+|...........++...++.+++.+|+.+ .+.+..+++.++
T Consensus 177 k~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 776 9999999999995433322223356677888888888753 345666665544
No 285
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.49 E-value=1e-12 Score=98.07 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=109.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC--Cccc------------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEK------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
--+|+++-....|||||+..|+.. .|.. ......|+|+-....-+....+.+.+.|||||..|..-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 458999999999999999998742 2221 11223366666666566667789999999999999999
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHHHHH-------HcCCc
Q 030686 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHR-------KKNLQ 148 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~-------~~~~~ 148 (173)
....+.-.|++++++|+.+..--+ .+-.+..-.. .+.+-|+|+||+|.++..... +...+.. +..++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 999999999999999999753111 1111111112 277778889999998754332 3333333 34577
Q ss_pred EEEEccCCCC----------ChHHHHHHHHHHh
Q 030686 149 YYEISAKSNY----------NFEKPFLYLARKL 171 (173)
Q Consensus 149 ~~~~S~~~~~----------~i~~~~~~i~~~i 171 (173)
++..|++.|. ++..+|+.|.+.+
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 8999988764 7889999988765
No 286
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.49 E-value=3.9e-14 Score=90.31 Aligned_cols=113 Identities=24% Similarity=0.268 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccc-cceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+|++++|..|+|||+|+.++..+.+...+. ++.+ +......+.+.++.++.|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999987777654433 3333 233344567788999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
|+.++.++++.+ |...+.... .+.|.++++||.|+.+... +..+.+..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~------~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQ------VATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCc------CCHHHHHHHHHHhCCCcchhh
Confidence 999999988765 666665443 4688999999999854221 111222345678889998874
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.48 E-value=6.9e-13 Score=107.28 Aligned_cols=116 Identities=22% Similarity=0.206 Sum_probs=77.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCc--cccc---------cc---ceeEEEE----EEEEEecCcEEEEEEEeCCCcc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKY---------EP---TIGVEVH----PLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~---------~~---~~~~~~~----~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
+..+|+++|+.++|||||+++|+...- .... .+ ..|++.. ...+..++..+.+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 446899999999999999999874211 1000 00 0112211 1122224456889999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030686 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
.|.......++.+|++++|+|+......+...-| ...... +.|.++++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~--~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE--RVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc--CCCeEEEEECchhh
Confidence 9887788888999999999999876433322222 332232 67889999999975
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.48 E-value=2.7e-13 Score=110.93 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=80.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcc--c---------cccc---ceeEEEE--EEEEEe--------------cC
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K---------KYEP---TIGVEVH--PLDFFT--------------NC 59 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--~---------~~~~---~~~~~~~--~~~~~~--------------~~ 59 (173)
+.+-.+|+++|+.++|||||+++|+...-. . .+.+ ..|.+.. ...... +.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345579999999999999999998753210 0 0000 1112222 111211 22
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
..+.+.++||||+..|.......++.+|++++|+|+.++-..+...-| ...... ++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHHC--CCCEEEEEECCccc
Confidence 367889999999999988888888999999999999976544433323 333333 88999999999987
No 289
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.48 E-value=5.2e-13 Score=93.01 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cch---hh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRD---GY 82 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~---~~ 82 (173)
++|+++|.+|+||||++|.+++...........+.+...........+..+.++||||-..... +.. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999887765443322222222222222222457889999999432111 111 12
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcC---CCCEEEEEeCCCCcccccc---------HHHHHHHHHcCCcEE
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQVK---------AKQVTFHRKKNLQYY 150 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~ 150 (173)
..+.|++++|+... +-+..+ ...+..+.+.+. -..++||.|..|....... ....++....+-.|.
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 34689999999998 322111 223333333321 2347888888886543221 123355666777788
Q ss_pred EEccC------CCCChHHHHHHHHHHh
Q 030686 151 EISAK------SNYNFEKPFLYLARKL 171 (173)
Q Consensus 151 ~~S~~------~~~~i~~~~~~i~~~i 171 (173)
.++.+ ....+.++++.+-+.+
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHH
Confidence 87776 3356778777765543
No 290
>PTZ00416 elongation factor 2; Provisional
Probab=99.46 E-value=4.3e-13 Score=109.58 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=78.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCc--ccccc------------cceeEEEEE--EEEEec--------CcEEEEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYE------------PTIGVEVHP--LDFFTN--------CGKIRFYCW 67 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~------------~~~~~~~~~--~~~~~~--------~~~~~~~~~ 67 (173)
+..+|+++|..++|||||+++|+...- ..... ...|++... ...... +..+.+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 446999999999999999999875211 00000 011222221 122222 225778999
Q ss_pred eCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030686 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 68 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
||||+..+.......++.+|++++|+|+.+.-..+.. ..+..+... ++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc--CCCEEEEEEChhhh
Confidence 9999998887778888999999999999876433332 233344333 78999999999987
No 291
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.45 E-value=7e-13 Score=98.12 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=78.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccc-cccc--ceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhh-----
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEP--TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY----- 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~----- 82 (173)
..+++|+|+|.+|+|||||||+|.+-...+ ...+ ...+|.....+.. ...-++.+||+||..........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 456899999999999999999975422221 1122 1222333223322 122369999999976554444444
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc--cc------ccc-----HHHHHHH----HHc
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--NR------QVK-----AKQVTFH----RKK 145 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~------~~~-----~~~~~~~----~~~ 145 (173)
+...|.+|++.+-.-.+. + .++...+.+. ++|+.+|-+|+|.. .. ... ++..+.+ ++.
T Consensus 112 ~~~yD~fiii~s~rf~~n--d-v~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEN--D-VQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GGG-SEEEEEESSS--HH--H-HHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred ccccCEEEEEeCCCCchh--h-HHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 446788888766433221 1 1233445444 88999999999952 11 111 1111111 222
Q ss_pred C---CcEEEEccCCCC--ChHHHHHHHHHHh
Q 030686 146 N---LQYYEISAKSNY--NFEKPFLYLARKL 171 (173)
Q Consensus 146 ~---~~~~~~S~~~~~--~i~~~~~~i~~~i 171 (173)
+ .++|-+|+.+-. ++..+.+.+.+.+
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 2 357888887544 5777888777654
No 292
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.44 E-value=5e-12 Score=90.70 Aligned_cols=158 Identities=17% Similarity=0.250 Sum_probs=109.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe--cCcEEEEEEEeCCCcccccCcchhhccCC---
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCGKIRFYCWDTAGQEKFGGLRDGYYIHG--- 86 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~--- 86 (173)
..-+|+++|..++|||||+.+|.+.. .+.+..|..+....+.- .+....+.+|-.-|.--...+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34689999999999999999955443 33445555655555432 23345778888888765555555554433
Q ss_pred -CEEEEEEECCChh-hhhcHHHHHHHHhh-------------------------hc------------------------
Q 030686 87 -QCAIIMFDVTARL-TYKNVPTWHRDLCR-------------------------VC------------------------ 115 (173)
Q Consensus 87 -~~~i~v~d~~~~~-s~~~~~~~~~~~~~-------------------------~~------------------------ 115 (173)
..+|++.|.+++- -++.+++|..-+.+ ++
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 5788899999983 34445555443211 10
Q ss_pred -------------CCCCEEEEEeCCCCcc-------------ccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 116 -------------ENIPIVLCGNKVDVKN-------------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 116 -------------~~~p~ivv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
-++|++||.+|||... .........||.+++...+.+|++...|++-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 0269999999999732 11233455889999999999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 288 r~y 290 (473)
T KOG3905|consen 288 RSY 290 (473)
T ss_pred Hhc
Confidence 764
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.44 E-value=1.9e-12 Score=95.00 Aligned_cols=101 Identities=10% Similarity=-0.019 Sum_probs=66.0
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---- 136 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---- 136 (173)
++.+.++||+|..+.... ....+|.++++.+...+..++..+. .+.+. .-++|+||+|+.......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~----aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL----ADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh----hheEEeehhcccchhHHHHHHH
Confidence 578899999997733222 4667999999977555554444332 12222 127889999987643211
Q ss_pred HHHHHHHH-------cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 137 KQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 137 ~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+....... +..+++.+||+++.|++++++.+.+..
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 12222221 235789999999999999999988753
No 294
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.43 E-value=6.2e-12 Score=88.34 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=82.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+...|+++|.+|+|||||++.++............|. ..+. ......+.++|+||.- .. .....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~-~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVV-TGKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEE-ecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 44578999999999999999997754222211112221 1111 1245678899999854 11 223457899999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCE-EEEEeCCCCccccc-cHH----HHH-HHH--HcCCcEEEEccCCCCCh
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQV-KAK----QVT-FHR--KKNLQYYEISAKSNYNF 160 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~~~----~~~-~~~--~~~~~~~~~S~~~~~~i 160 (173)
+++|++....... ...+..+... +.|. ++|+||+|+.+... ..+ ... +.. ..+.+++.+||++.-.+
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 9999986433222 2233333333 6774 55999999864221 111 111 221 12468999999877543
No 295
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2e-12 Score=95.83 Aligned_cols=138 Identities=19% Similarity=0.183 Sum_probs=99.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh-CCccc------------c-------cccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT-GEFEK------------K-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~-~~~~~------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
++-..+|+-.|.+|||||.+.|+. +.... . ...-.|+......+.++.....+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 356789999999999999999763 21100 0 011225566666667777889999999999
Q ss_pred cccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEE
Q 030686 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (173)
|+.|..-+-..+..+|.+++|+|+...-.-+. .++++-.+- .++|++=++||.|...+.+.+-..+.....++...+
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl--R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~P 167 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL--RDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAP 167 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh--cCCceEEEeeccccccCChHHHHHHHHHHhCcceec
Confidence 99999999999999999999999986532222 233333333 499999999999998887766666666666655444
Q ss_pred E
Q 030686 152 I 152 (173)
Q Consensus 152 ~ 152 (173)
+
T Consensus 168 i 168 (528)
T COG4108 168 I 168 (528)
T ss_pred c
Confidence 3
No 296
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.42 E-value=1.4e-13 Score=97.06 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=54.9
Q ss_pred EEEEEeCCCcccccCcchhhc--------cCCCEEEEEEECCChhhh-hcHHHHHHHHhhh-cCCCCEEEEEeCCCCccc
Q 030686 63 RFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARLTY-KNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~ 132 (173)
.+.++|||||.+.-..+...- ...-++++++|.....+- ..+..++..+.-. .-+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 789999999876544433332 345678888887743221 1122222222111 128999999999999762
Q ss_pred cccH------------------------HHHHHHHHcC-C-cEEEEccCCCCChHHHHHHHHHH
Q 030686 133 QVKA------------------------KQVTFHRKKN-L-QYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 133 ~~~~------------------------~~~~~~~~~~-~-~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
.... +..+.....+ . .++++|+.+++|+.+++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 2000 0001111122 3 69999999999999999887654
No 297
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.41 E-value=8.3e-12 Score=90.13 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=74.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccccc----------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc----
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL---- 78 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---- 78 (173)
.++|+|+|.+|+|||||+|.|+........ ..+............++..+.+.++||||.......
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999998765432221 123333444444555667789999999993221111
Q ss_pred ----------------------c-hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-
Q 030686 79 ----------------------R-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV- 134 (173)
Q Consensus 79 ----------------------~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 134 (173)
. ...=...|+++|.++.+.. .+..+. +..+++....+++|.|+.|+|......
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D--i~~mk~Ls~~vNvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD--IEFMKRLSKRVNVIPVIAKADTLTPEEL 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH--HHHHHHHTTTSEEEEEESTGGGS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH--HHHHHHhcccccEEeEEecccccCHHHH
Confidence 0 0111246899999987643 222222 234444445788999999999754222
Q ss_pred ---cHHHHHHHHHcCCcEEEE
Q 030686 135 ---KAKQVTFHRKKNLQYYEI 152 (173)
Q Consensus 135 ---~~~~~~~~~~~~~~~~~~ 152 (173)
.....+....+++.++..
T Consensus 161 ~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 161 QAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHHHHHHHHHHHTT--S---
T ss_pred HHHHHHHHHHHHHcCceeecc
Confidence 222234445566665543
No 298
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=3.7e-13 Score=92.05 Aligned_cols=143 Identities=19% Similarity=0.271 Sum_probs=92.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCccccc-----CcchhhccCC
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFG-----GLRDGYYIHG 86 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~-----~~~~~~~~~~ 86 (173)
.-||+++|.+|+|||++-..+..+.. .......|.+.+....... ..+..+.+||++|++.+- ......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~-a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYI-ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhh-hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 46899999999999998876554432 1112222332222111111 234788999999988432 3556678899
Q ss_pred CEEEEEEECCChhhhh---cHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH----H----HHHHHcCCcEEEEccC
Q 030686 87 QCAIIMFDVTARLTYK---NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----V----TFHRKKNLQYYEISAK 155 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~----~~~~~~~~~~~~~S~~ 155 (173)
+++++|+|+...+-.. ..++.++.+.++.|...+.+..+|.|+......... . ...+..++.++++|..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 9999999999876444 444566777787788889999999999763322211 1 2222345667777766
Q ss_pred C
Q 030686 156 S 156 (173)
Q Consensus 156 ~ 156 (173)
+
T Consensus 163 D 163 (295)
T KOG3886|consen 163 D 163 (295)
T ss_pred h
Confidence 4
No 299
>PTZ00258 GTP-binding protein; Provisional
Probab=99.40 E-value=1.8e-11 Score=91.62 Aligned_cols=84 Identities=17% Similarity=0.005 Sum_probs=52.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEE--EecCc---------------EEEEEEEeCCCcc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--FTNCG---------------KIRFYCWDTAGQE 73 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------------~~~~~~~D~~G~~ 73 (173)
...++|+++|.||+|||||+|+|...... .....++|...... .+.+. ...+.++|+||..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVP--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCccc--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 44589999999999999999997544332 12223333332222 22211 2358999999954
Q ss_pred cccC----cchh---hccCCCEEEEEEECC
Q 030686 74 KFGG----LRDG---YYIHGQCAIIMFDVT 96 (173)
Q Consensus 74 ~~~~----~~~~---~~~~~~~~i~v~d~~ 96 (173)
.... +... .++++|++++|+|..
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3221 2222 356899999999974
No 300
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.1e-11 Score=89.66 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=94.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC----Cccccccc-ceeEEE----EEEEEE----e-cCcEEEEEEEeCCCcccccC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTG----EFEKKYEP-TIGVEV----HPLDFF----T-NCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~----~~~~~~~~-~~~~~~----~~~~~~----~-~~~~~~~~~~D~~G~~~~~~ 77 (173)
..+++.++|...||||||.+++..- .+.....+ +.|.+. ...... . .++...|.++|+||+..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas--- 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS--- 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence 3499999999999999999996531 11111111 112221 111111 1 34568899999999974
Q ss_pred cchhhccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-cHHHHHHH----HH-----
Q 030686 78 LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFH----RK----- 144 (173)
Q Consensus 78 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~----~~----- 144 (173)
+.+..+.. .|..++|+|+.....-+.+.-+ .+.+.. -...++|+||+|...+.. .....+.+ +.
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~-c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL-CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh-ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 34444433 5899999999977544444321 121211 234577889888654322 11111111 11
Q ss_pred --cCCcEEEEccCCC----CChHHHHHHHHHHhh
Q 030686 145 --KNLQYYEISAKSN----YNFEKPFLYLARKLA 172 (173)
Q Consensus 145 --~~~~~~~~S~~~~----~~i~~~~~~i~~~i~ 172 (173)
.+.+++++|++.| +++.++.+.+.+++.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 2478999999999 899999999888765
No 301
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.38 E-value=2.6e-11 Score=92.80 Aligned_cols=159 Identities=21% Similarity=0.290 Sum_probs=109.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec--CcEEEEEEEeCCCcccccCcchhhccC---
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIH--- 85 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~--- 85 (173)
...-.|+|+|..++|||||+.+|.+.. ...++.+.++....+.-+ +....+.+|-+.|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 455789999999999999999965433 234566666655554322 233578999998877676666655553
Q ss_pred -CCEEEEEEECCChhhh-hcHHHHHHHH-------------------------hhhc-----------------------
Q 030686 86 -GQCAIIMFDVTARLTY-KNVPTWHRDL-------------------------CRVC----------------------- 115 (173)
Q Consensus 86 -~~~~i~v~d~~~~~s~-~~~~~~~~~~-------------------------~~~~----------------------- 115 (173)
--.+++|.|.+.|..+ +.+.+|+..+ ..+.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 3578889999987433 2333332221 1000
Q ss_pred ---------------CCCCEEEEEeCCCCcc----c---------cccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 116 ---------------ENIPIVLCGNKVDVKN----R---------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 116 ---------------~~~p~ivv~nK~Dl~~----~---------~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
-.+|++||.+|+|... + .+....+.+|..+|+.++.+|++...+++.+..+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 0269999999999632 1 11223457888999999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 260 ~h~l~ 264 (472)
T PF05783_consen 260 LHRLY 264 (472)
T ss_pred HHHhc
Confidence 88764
No 302
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.5e-12 Score=91.29 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=99.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccce--eEE--------------------EEEEEEEec------CcEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI--GVE--------------------VHPLDFFTN------CGKI 62 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~--~~~--------------------~~~~~~~~~------~~~~ 62 (173)
.++++|..+|....|||||..++.+ .....+.... |++ .+...-.+. .--.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG-vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG-VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc-eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 4689999999999999999999543 2221111100 000 000000111 1125
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH---
Q 030686 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--- 139 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--- 139 (173)
.+.|.|.||++-.......-..=.|++++|+.++.+.--...+.-+-.+ +...-..++++-||+|+..++...+..
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhccceEEEEecccceecHHHHHHHHHHH
Confidence 7889999999955443333333359999999998754322223323333 222344589999999998865443332
Q ss_pred -HHHHH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 140 -TFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 140 -~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+|.+- .+.+++++||..+.|++-++++|.+.+
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 23322 367899999999999999999998875
No 303
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.38 E-value=3.8e-11 Score=91.85 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=112.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+-+++.++|+.++|||.+++.++++.+...+..+.........+...+....+.+-|.+-. ....+...- ..+|++.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 34589999999999999999999998776655455444444444444566677788887754 222222222 6799999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--ccHHHHHHHHHcCCc-EEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~~~~i 167 (173)
++||.+++.++.......+.-... ...|+++|++|+|+.+.. ......+++++++++ .+.+|.+.... .++|..|
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL 578 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKL 578 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHH
Confidence 999999999988876655444333 689999999999998733 222237888888874 57788885334 8888888
Q ss_pred HHHh
Q 030686 168 ARKL 171 (173)
Q Consensus 168 ~~~i 171 (173)
....
T Consensus 579 ~~~A 582 (625)
T KOG1707|consen 579 ATMA 582 (625)
T ss_pred HHhh
Confidence 7654
No 304
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.37 E-value=9.2e-12 Score=91.17 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=76.9
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh-------hhhcHHHHHHHHhhhc-----CCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRVC-----ENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~ 127 (173)
.+..+.++|.|||..-+.-|.+++.+++++++|+++++-. ..+.+..-+..+...+ .+.++++++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 5688999999999999999999999999999999999632 2233333333333332 589999999999
Q ss_pred CCcccc-----------------ccHHHHH-----HHHHc-----CCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 128 DVKNRQ-----------------VKAKQVT-----FHRKK-----NLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~-----------------~~~~~~~-----~~~~~-----~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+-.+. ..++... +.... .+=...+.|.+-.+|+.+|+++...+.
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii 344 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTII 344 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHH
Confidence 974311 1111111 11111 122345678888899999998877664
No 305
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.37 E-value=1.7e-11 Score=85.14 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=82.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccc------------cc----cceeEEEEEEEEE----------------ecC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK------------YE----PTIGVEVHPLDFF----------------TNC 59 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~------------~~----~~~~~~~~~~~~~----------------~~~ 59 (173)
....|+++|..|+|||||+++++....... .. ...+.......-. ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 357889999999999999999764311000 00 0001000000000 000
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cHH
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAK 137 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~ 137 (173)
....+.++++.|.-... ..+....+..+.|+|+.+.... ...... . ...|.++++||+|+.+... ..+
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~---~--~~~a~iiv~NK~Dl~~~~~~~~~~ 170 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYPG---M--FKEADLIVINKADLAEAVGFDVEK 170 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhHh---H--HhhCCEEEEEHHHccccchhhHHH
Confidence 13466777777721111 1111234555677887754321 111111 1 1457799999999975322 222
Q ss_pred HHHHHHHc--CCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 138 QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 138 ~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
..+..++. ..+++++||+++.|+.++++++.+..
T Consensus 171 ~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 171 MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 33333333 37899999999999999999998753
No 306
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.9e-11 Score=97.38 Aligned_cols=133 Identities=18% Similarity=0.152 Sum_probs=92.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--Cccc---c-----------cccceeEEEEEEEEEecCc-EEEEEEEeCCCcc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK---K-----------YEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE 73 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~---~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~ 73 (173)
....+|.++|+-.+||||+.++++.. .... . .....|+|...-...+... .+.+.++|||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 44578999999999999999998742 1110 0 0112244444444444444 5899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcC
Q 030686 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 146 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (173)
.|..-....++-+|++++|+|+...-..+.-.-|... .++ ++|.++++||+|........-..++....+
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-~~~--~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-DKY--GVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-hhc--CCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 9999999999999999999999987554544444433 343 899999999999876554443344443333
No 307
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.3e-11 Score=95.33 Aligned_cols=157 Identities=22% Similarity=0.207 Sum_probs=98.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc----ceeEEEEEEEE--------Eec-C---cEEEEEEEeCCCccc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----TIGVEVHPLDF--------FTN-C---GKIRFYCWDTAGQEK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~--------~~~-~---~~~~~~~~D~~G~~~ 74 (173)
.+..-++|+|...+|||-|+..+.+.+....-.. -+|.++.+..- .-+ . .---+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 3445689999999999999998655333221111 11222222110 000 0 112367899999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc------cc------------ccH
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN------RQ------------VKA 136 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------~~------------~~~ 136 (173)
|..+......-||.+|+|+|+...-.-+. ..-++.++.. +.|+||++||+|..- .. ...
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqt-iESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQT-IESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcch-hHHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 99999999999999999999985421111 1223455554 899999999999421 00 000
Q ss_pred H-------H-HHHHHHc-C-------------CcEEEEccCCCCChHHHHHHHHHH
Q 030686 137 K-------Q-VTFHRKK-N-------------LQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 137 ~-------~-~~~~~~~-~-------------~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
+ . .+|+.+. + ++++++||.+|+||.+++-+|++.
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 0 0 0122110 1 346899999999999999988764
No 308
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.30 E-value=9.1e-12 Score=87.30 Aligned_cols=101 Identities=7% Similarity=0.014 Sum_probs=64.9
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ- 138 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~- 138 (173)
.++.+.+++|.|-.+.. -....-+|.+++|.-....+..+.++.=+-++-. ++|+||+|.+........
T Consensus 120 aG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD-------i~vVNKaD~~gA~~~~~~l 189 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD-------IFVVNKADRPGADRTVRDL 189 (266)
T ss_dssp TT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S-------EEEEE--SHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc-------EEEEeCCChHHHHHHHHHH
Confidence 35778889988754322 2245569999999999988887777764445533 788999996653322222
Q ss_pred HHHHHH-------cCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 139 VTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 139 ~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
...... +..+++.+||.++.|++++++.|.+.
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 222211 23578999999999999999998763
No 309
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.30 E-value=2.1e-10 Score=85.08 Aligned_cols=81 Identities=17% Similarity=0.025 Sum_probs=50.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEE--EEEecCc---------------EEEEEEEeCCCccccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEKFG 76 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~~~D~~G~~~~~ 76 (173)
++|+++|.||+|||||+|++...... .....++|.... .+.+.+. ...+.+.|+||.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~--v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE--AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe--ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 78999999999999999997765521 122222332222 1122211 1358999999954321
Q ss_pred C----cchh---hccCCCEEEEEEECC
Q 030686 77 G----LRDG---YYIHGQCAIIMFDVT 96 (173)
Q Consensus 77 ~----~~~~---~~~~~~~~i~v~d~~ 96 (173)
. +... .++++|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 2222 357899999999984
No 310
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.29 E-value=9.6e-11 Score=78.60 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=52.4
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc--HHHHHHH--HHcCCcEEEEccCCCCCh
Q 030686 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFH--RKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~--~~~~~~~~~~S~~~~~~i 160 (173)
..+.-|+|+|++..+-.. .+-.+.+.+ .=++|+||.|+...... +...+-+ -+.+.+++++|+++|+|+
T Consensus 117 ~d~~~v~VidvteGe~~P--~K~gP~i~~-----aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 117 GDHLRVVVIDVTEGEDIP--RKGGPGIFK-----ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred hhceEEEEEECCCCCCCc--ccCCCceeE-----eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 345889999998764211 010111111 22788999999874332 2222323 345789999999999999
Q ss_pred HHHHHHHHHHhh
Q 030686 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
+++++|+.....
T Consensus 190 ~~~~~~i~~~~~ 201 (202)
T COG0378 190 DEWLRFIEPQAL 201 (202)
T ss_pred HHHHHHHHhhcc
Confidence 999999987653
No 311
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.29 E-value=5.5e-11 Score=87.00 Aligned_cols=100 Identities=10% Similarity=-0.002 Sum_probs=63.2
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH--
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-- 138 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-- 138 (173)
++.+.++||+|..... ......+|.++++-..... +++......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence 5788999999854221 2345667888887544332 3333322222 26678999999999764321110
Q ss_pred ------HHHHH---HcCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 139 ------VTFHR---KKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 139 ------~~~~~---~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
..+.. ....+++++||+++.|++++++++.+.
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 01111 122468999999999999999999875
No 312
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.28 E-value=2.7e-11 Score=81.30 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=43.3
Q ss_pred EEEEEeCCCccc----ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030686 63 RFYCWDTAGQEK----FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 63 ~~~~~D~~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
.+.++|+||... ....+..++..+|++++|.+++...+-.....+....... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 477999999532 3356778889999999999999865544444444444443 33488888984
No 313
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=7e-11 Score=83.84 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=100.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh---CC-------cc----cccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT---GE-------FE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~---~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
.+.++|..+|....|||||..++.. .. +. .......|+++....+.++.....+-..|+||+..|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 4579999999999999999887542 11 00 1112244667666666666677888999999999887
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc-----cHHHHHHHHHcCCc--
Q 030686 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKNLQ-- 148 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~-- 148 (173)
.+...-..+.|+.|+|+++++..--+.- .-+..-++. .+| +++++||+|+.++.. ..+..++..+++++
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTr-EHiLlarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd 166 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGD 166 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcch-hhhhhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7666666788999999999986532221 111122222 676 667889999987332 33445667777643
Q ss_pred ---EEEEccCC--------CCChHHHHHHHHH
Q 030686 149 ---YYEISAKS--------NYNFEKPFLYLAR 169 (173)
Q Consensus 149 ---~~~~S~~~--------~~~i~~~~~~i~~ 169 (173)
++.-|+.. ...+.++++++-+
T Consensus 167 ~~Pii~gSal~ale~~~~~~~~i~eLm~avd~ 198 (394)
T COG0050 167 DTPIIRGSALKALEGDAKWEAKIEELMDAVDS 198 (394)
T ss_pred CcceeechhhhhhcCCcchHHHHHHHHHHHHh
Confidence 45444431 1134566665544
No 314
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.24 E-value=5.4e-10 Score=77.82 Aligned_cols=87 Identities=9% Similarity=0.039 Sum_probs=59.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-------cchhhcc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYI 84 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~ 84 (173)
-..+++++|.|.+|||||+..+. ....+. .+..-++...+.......+..+++.|.||.-...+ ......+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT-~T~Sea-A~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKIT-STHSEA-ASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhh-cchhhh-hceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 35799999999999999999844 433332 22233455555555555677899999999532221 2233467
Q ss_pred CCCEEEEEEECCChhh
Q 030686 85 HGQCAIIMFDVTARLT 100 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s 100 (173)
.+|++++|.|++..+.
T Consensus 139 taDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 139 TADLILMVLDATKSED 154 (364)
T ss_pred cccEEEEEecCCcchh
Confidence 8999999999997553
No 315
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.24 E-value=1.9e-11 Score=86.92 Aligned_cols=101 Identities=10% Similarity=0.020 Sum_probs=69.1
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 139 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 139 (173)
.++.+.+++|.|-.+.. ......+|.+++|.=..-....+.++.=+-++-. ++|+||.|....+......
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD-------i~vINKaD~~~A~~a~r~l 211 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD-------IIVINKADRKGAEKAAREL 211 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh-------eeeEeccChhhHHHHHHHH
Confidence 46788899998865433 2244568999998887777777777664444444 7889999976643322222
Q ss_pred HHHHH----------cCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 140 TFHRK----------KNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 140 ~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
.++.. +.-+.+.+||..|+|++++++.+.+.
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence 22211 23568999999999999999998764
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.23 E-value=2.5e-10 Score=80.46 Aligned_cols=91 Identities=9% Similarity=0.093 Sum_probs=52.9
Q ss_pred EEEEEEeCCCcccc-------------cCcchhhcc-CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030686 62 IRFYCWDTAGQEKF-------------GGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 62 ~~~~~~D~~G~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
..++++|+||.... ..+...|+. ..+.+++|+|+...-.-.........+.. .+.|+++|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence 57889999996421 123455666 45689999988743221222233333333 378999999999
Q ss_pred CCccccccHHHHHHHHH----cCCcEEEEccCC
Q 030686 128 DVKNRQVKAKQVTFHRK----KNLQYYEISAKS 156 (173)
Q Consensus 128 Dl~~~~~~~~~~~~~~~----~~~~~~~~S~~~ 156 (173)
|..++... ....... ....|+-+-...
T Consensus 203 D~~~~~~~--~~~~~~~~~~~l~~g~~~v~nr~ 233 (240)
T smart00053 203 DLMDEGTD--ARDILENKLLPLRRGYIGVVNRS 233 (240)
T ss_pred CCCCccHH--HHHHHhCCccccCCCEEEEECCC
Confidence 98764322 3333332 234566554443
No 317
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.8e-10 Score=85.74 Aligned_cols=155 Identities=15% Similarity=0.060 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
.|+..|.-..|||||+..+.+..... .-....|++.+.--...+.....+.|+|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 46778999999999999965443211 11223455555444444445568999999999988877777778899999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-HHHH---HHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFH---RKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~---~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+.++.-..+.. ..-.+.+.......++|+||+|..+....+.. .+.. ...+.+++.+|+.+|+|+.++.++|.+
T Consensus 82 ~~deGl~~qtg--EhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~ 159 (447)
T COG3276 82 AADEGLMAQTG--EHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELID 159 (447)
T ss_pred eCccCcchhhH--HHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence 99754322221 22233333334446999999999874322221 1222 233567899999999999999999876
Q ss_pred Hh
Q 030686 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
..
T Consensus 160 L~ 161 (447)
T COG3276 160 LL 161 (447)
T ss_pred hh
Confidence 53
No 318
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.22 E-value=6.9e-11 Score=78.50 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=63.3
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCC
Q 030686 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (173)
.+.++..+++|++++|+|++++...... .+...+.. .+.|+++|+||+|+.+.........+....+.+++++||++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 4566778889999999999876533331 22222222 37899999999998643222221123334567899999999
Q ss_pred CCChHHHHHHHHHHh
Q 030686 157 NYNFEKPFLYLARKL 171 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i 171 (173)
+.|++++++.+.+.+
T Consensus 81 ~~gi~~L~~~l~~~~ 95 (156)
T cd01859 81 RLGTKILRRTIKELA 95 (156)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999987653
No 319
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.21 E-value=5e-11 Score=85.57 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=90.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccccc--ccceeEEEEEEEEEecCcEEEEEEEeCCCccccc--Ccchh------h
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG--GLRDG------Y 82 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~~~~~------~ 82 (173)
.--|+++|..|+|||||+++|..-...+.. -.|...|...... . .+-.+-+.||.|.-+-- .+... -
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~L--p-sg~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHL--P-SGNFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccC--C-CCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 456899999999999999997743333221 2233333322222 2 34567788999842211 12222 2
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CC----CCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCC
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN----IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~----~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
...+|+++.|.|++.|..-......+.-+.+.- +. ..++=|-||+|........+. ++ -+.+||++|
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~------n~--~v~isaltg 326 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK------NL--DVGISALTG 326 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcccc------CC--ccccccccC
Confidence 457999999999999865444444444444431 11 124556688887665443321 11 477999999
Q ss_pred CChHHHHHHHHHHh
Q 030686 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
+|+.++.+.+-.++
T Consensus 327 dgl~el~~a~~~kv 340 (410)
T KOG0410|consen 327 DGLEELLKAEETKV 340 (410)
T ss_pred ccHHHHHHHHHHHh
Confidence 99999998876554
No 320
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.4e-10 Score=90.08 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=82.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc-----------------ceeEEEEEEEEE---ecCcEEEEEEEeC
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----------------TIGVEVHPLDFF---TNCGKIRFYCWDT 69 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~~~D~ 69 (173)
+....+++++|+-++|||+|+..|.....+..... ..++.....+.. ..++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34457899999999999999998765443322111 111222222322 2467789999999
Q ss_pred CCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030686 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (173)
Q Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (173)
||+-.|..-....++.+|++++++|+.+.-.++.-+ .+....+ .+.|+++|+||+|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHh--ccCcEEEEEehhHH
Confidence 999999998889999999999999999876554422 2222222 38999999999995
No 321
>PRK12289 GTPase RsgA; Reviewed
Probab=99.20 E-value=9.5e-11 Score=87.02 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=69.3
Q ss_pred ccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEc
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S 153 (173)
-..+.+..+.++|.+++|+|+.++. ....+..|+..... .++|+++|+||+||.+..............++.++.+|
T Consensus 79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEE
Confidence 3455666789999999999998765 33345666665533 48999999999999754322222334456788999999
Q ss_pred cCCCCChHHHHHHHHHH
Q 030686 154 AKSNYNFEKPFLYLARK 170 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~ 170 (173)
|+++.|++++++.+...
T Consensus 157 A~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 157 VETGIGLEALLEQLRNK 173 (352)
T ss_pred cCCCCCHHHHhhhhccc
Confidence 99999999999987653
No 322
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.7e-10 Score=78.86 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---cchhhccCCCEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQCAI 90 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~~~~i 90 (173)
.+|+++|...+|||++.+....+..+.. .-....+.....-.+...-+.|.+||.||+-.+-. -....++++-+++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 4599999999999999987444443322 11111111111112223557899999999865432 3455688999999
Q ss_pred EEEECCChh--hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH--------H-HHHH--Hc--CCcEEEEccC
Q 030686 91 IMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--------V-TFHR--KK--NLQYYEISAK 155 (173)
Q Consensus 91 ~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--------~-~~~~--~~--~~~~~~~S~~ 155 (173)
+|+|+.+.- .+..+...+....+.++++.+=+++.|.|-..+....+. . +++. .. .++|+-+| .
T Consensus 107 fvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS-I 185 (347)
T KOG3887|consen 107 FVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS-I 185 (347)
T ss_pred EEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee-e
Confidence 999987542 222222233333344588999999999995432211111 1 1111 11 23344444 4
Q ss_pred CCCChHHHHHHHHHHhh
Q 030686 156 SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i~ 172 (173)
...++-|.|..+.++++
T Consensus 186 yDHSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 186 YDHSIFEAFSKVVQKLI 202 (347)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 56789999998888764
No 323
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.17 E-value=1.5e-09 Score=79.42 Aligned_cols=137 Identities=16% Similarity=0.267 Sum_probs=83.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccc----------cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc---
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--- 78 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--- 78 (173)
-.++|+++|+.|+|||||+|.|++...... ..++.........+..++..+.+.++||||...+-..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 358999999999999999999876522111 2244444455555555677789999999994332211
Q ss_pred chh-----------------------hcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc
Q 030686 79 RDG-----------------------YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (173)
Q Consensus 79 ~~~-----------------------~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (173)
|.. -+. ..|+++|.+..+. .++..+. +..+++....+-+|.|+.|+|.--..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLD--IEAMKRLSKRVNLIPVIAKADTLTDD 178 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHH--HHHHHHHhcccCeeeeeeccccCCHH
Confidence 111 111 3577777776553 3333333 23334444467789999999975422
Q ss_pred ----ccHHHHHHHHHcCCcEEE
Q 030686 134 ----VKAKQVTFHRKKNLQYYE 151 (173)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~ 151 (173)
......+....+++++|.
T Consensus 179 El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 179 ELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHhCCceeC
Confidence 222334556667777764
No 324
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.16 E-value=1.9e-10 Score=83.63 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=68.7
Q ss_pred hhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCC
Q 030686 80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (173)
+..+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+.+..............+.+++++|++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 44588999999999999887 777777887776654 899999999999976422122233445568899999999999
Q ss_pred ChHHHHHHHHH
Q 030686 159 NFEKPFLYLAR 169 (173)
Q Consensus 159 ~i~~~~~~i~~ 169 (173)
|++++++.+..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999988754
No 325
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.15 E-value=5.2e-10 Score=87.81 Aligned_cols=118 Identities=10% Similarity=0.092 Sum_probs=69.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-------c---chhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------L---RDGY 82 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~---~~~~ 82 (173)
.++|+++|.+|+||||++|.+++...........+++.. ........+..+.++||||...... . ...+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 479999999999999999998876533222211222222 2221112346799999999654321 0 1113
Q ss_pred cc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcC---CCCEEEEEeCCCCcc
Q 030686 83 YI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (173)
Q Consensus 83 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 131 (173)
+. ..|++++|..++.......-..+++.+.+.+. -.-+|||+|+.|...
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 33 47999999987643222122244555544432 234788899999764
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.15 E-value=1.9e-10 Score=78.89 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=64.3
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH-HHHHH-----HHcCC-
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL- 147 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~-----~~~~~- 147 (173)
++.++..+++++|++++|+|++++.. .|...+.....+.|+++|+||+|+.......+ ...+. ...+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 46677888999999999999987642 12222222234789999999999875433222 22332 22332
Q ss_pred --cEEEEccCCCCChHHHHHHHHHHh
Q 030686 148 --QYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 148 --~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.++++||+++.|++++++++.+.+
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998753
No 327
>PRK00098 GTPase RsgA; Reviewed
Probab=99.12 E-value=3.6e-10 Score=82.63 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=64.6
Q ss_pred hccCCCEEEEEEECCChhhhhc-HHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHHHHHHHHHcCCcEEEEccCCCCC
Q 030686 82 YYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (173)
...++|.+++|+|+.++..... +..|+..+.. .++|+++|+||+|+.+ .....+........+.+++++|++++.|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 3589999999999988765444 4567666554 3899999999999963 2222223345556688999999999999
Q ss_pred hHHHHHHHHH
Q 030686 160 FEKPFLYLAR 169 (173)
Q Consensus 160 i~~~~~~i~~ 169 (173)
++++++.+..
T Consensus 155 i~~L~~~l~g 164 (298)
T PRK00098 155 LDELKPLLAG 164 (298)
T ss_pred HHHHHhhccC
Confidence 9999988753
No 328
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.11 E-value=2.7e-10 Score=86.28 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=76.0
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh-------hhhcHHHHHHHHhhh-----cCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRV-----CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~ 127 (173)
....+.++|++|+...+.-|.+++.++++++||+++++-. ....+..-+..+... ..+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 5568899999999999999999999999999999998532 223343333333332 2589999999999
Q ss_pred CCcc------c--------------cccHHHHHHHHH------------cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 128 DVKN------R--------------QVKAKQVTFHRK------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 128 Dl~~------~--------------~~~~~~~~~~~~------------~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
|+-. . ........+... ..+-+..++|.+..++..+|+.+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9632 1 011122222211 112356899999999999999887653
No 329
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2.7e-09 Score=73.87 Aligned_cols=140 Identities=15% Similarity=0.200 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccc---------ccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc---Ccc-
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---GLR- 79 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~~- 79 (173)
.++|+|+|.+|.||||++|.+....... ....|.........+..++...+++++||||...+- ..|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 4899999999999999999976543221 112222222222333445667789999999943221 111
Q ss_pred ----------------------hhhccC--CCEEEEEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCcc---
Q 030686 80 ----------------------DGYYIH--GQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--- 131 (173)
Q Consensus 80 ----------------------~~~~~~--~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~--- 131 (173)
...+.. .+.++|.+..+ ..++..+.- ++..+.+ -+-++-|+-|.|..-
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDtlTleE 201 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLEE 201 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeecccccHHH
Confidence 112333 45555555544 445555442 3333333 455788889999532
Q ss_pred -ccccHHHHHHHHHcCCcEEEEccCC
Q 030686 132 -RQVKAKQVTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (173)
....+...+-...+++.+++-.+-+
T Consensus 202 r~~FkqrI~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 202 RSAFKQRIRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred HHHHHHHHHHHHHhcCcccccccccc
Confidence 2222333455556777766654433
No 330
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.09 E-value=7.4e-10 Score=79.70 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=38.7
Q ss_pred CCEEEEEeCCCCcccc--ccHHHHHHHHH--cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 118 IPIVLCGNKVDVKNRQ--VKAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 118 ~p~ivv~nK~Dl~~~~--~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+-++|+||+|+.... ..+...+..+. ...+++++|+++|+|++++.+||.++.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4558899999997521 12222232322 357899999999999999999998753
No 331
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=7.4e-09 Score=76.20 Aligned_cols=140 Identities=17% Similarity=0.297 Sum_probs=83.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccc---------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------ 77 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------ 77 (173)
.++++++|++|.|||||+|.|+...... ....+..+.........++..+.+++.||||....-.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 4899999999999999999977553221 2222444445545555567778999999999322111
Q ss_pred -------------------cchhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--
Q 030686 78 -------------------LRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (173)
Q Consensus 78 -------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-- 134 (173)
+.+.-+. ..|+++|.+..+. ..+..+. +..+++....+.+|.|+-|+|......
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~D--i~~Mk~l~~~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLD--IEFMKKLSKKVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhh--HHHHHHHhccccccceeeccccCCHHHHH
Confidence 1112223 4677777777653 2333333 223333344778899999999754332
Q ss_pred --cHHHHHHHHHcCCcEEEEccC
Q 030686 135 --KAKQVTFHRKKNLQYYEISAK 155 (173)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~S~~ 155 (173)
.....+....+++.++....-
T Consensus 178 ~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 178 QFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHHHHHcCcceecCCCC
Confidence 222334555666666554433
No 332
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=7e-09 Score=76.32 Aligned_cols=85 Identities=22% Similarity=0.141 Sum_probs=53.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccc--eeEEEEEEEEE----------ec-C---cEEEEEEEeCCCc----
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--IGVEVHPLDFF----------TN-C---GKIRFYCWDTAGQ---- 72 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~----------~~-~---~~~~~~~~D~~G~---- 72 (173)
.+++.++|.||+|||||.|++..........|. +..+.....+. .. . ...++.++|++|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 378999999999999999997765533222221 11111111111 01 1 2357899999873
Q ss_pred ccccCcchhh---ccCCCEEEEEEECCC
Q 030686 73 EKFGGLRDGY---YIHGQCAIIMFDVTA 97 (173)
Q Consensus 73 ~~~~~~~~~~---~~~~~~~i~v~d~~~ 97 (173)
.+.+.+-..| ++++|+++.|++...
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3344455555 678999999999883
No 333
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.05 E-value=5.1e-10 Score=85.36 Aligned_cols=156 Identities=21% Similarity=0.364 Sum_probs=116.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+++|+.|+|..++|||+|+.+++.+.+.....+.- .....++..++....+.+.|.+|.. ...|...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 3568999999999999999999999999876533332 3445666677778888888888733 34577789999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCc----cccccHHHH-HHHHHcCCcEEEEccCCCCChHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~----~~~~~~~~~-~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
|+|+.+.+..+++.+..+...+..+. ..+|+++++++--.. +.....+.. ..+....+.+|+.++.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 99999999999988877666665432 467788877764432 222222333 34455678999999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|..++.+++
T Consensus 180 vf~~~~~k~i 189 (749)
T KOG0705|consen 180 VFQEVAQKIV 189 (749)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 334
>PRK12288 GTPase RsgA; Reviewed
Probab=99.03 E-value=2.2e-09 Score=79.78 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=67.0
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc---HHHHHHHHHcCCcEEEEccCCCCC
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHRKKNLQYYEISAKSNYN 159 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~S~~~~~~ 159 (173)
..++|.+++|++.....++..+..|+..... .++|.++|+||+|+.+.... .+........+++++++||+++.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 4568999999999877788888888776544 37899999999999754321 222234456678999999999999
Q ss_pred hHHHHHHHHHH
Q 030686 160 FEKPFLYLARK 170 (173)
Q Consensus 160 i~~~~~~i~~~ 170 (173)
++++++++...
T Consensus 196 ideL~~~L~~k 206 (347)
T PRK12288 196 LEELEAALTGR 206 (347)
T ss_pred HHHHHHHHhhC
Confidence 99999998754
No 335
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.5e-09 Score=78.51 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=92.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCccc-----------------------ccccceeEEEEEEEEEe----------c
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-----------------------KYEPTIGVEVHPLDFFT----------N 58 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~----------~ 58 (173)
-+++++++|...+|||||+..|..+.... ......|.+.....+.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 36899999999999999998766543211 11112222222111111 2
Q ss_pred CcEEEEEEEeCCCcccccCcchhhccC--CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH
Q 030686 59 CGKIRFYCWDTAGQEKFGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (173)
Q Consensus 59 ~~~~~~~~~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (173)
...--++++|.+|+.+|...+.+.+.. .|.+.+|++++..-.... +.-+-.+... ++|+.++++|+|+.++....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence 223457899999999998877776664 478888888876532211 1222222222 99999999999997653211
Q ss_pred --------------------------HHHHHHH----HcCCcEEEEccCCCCChHHHHH
Q 030686 137 --------------------------KQVTFHR----KKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 137 --------------------------~~~~~~~----~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+....+. ..-.++|.+|+.+|+|++-+..
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 1111111 1224678999999999886543
No 336
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.00 E-value=1.2e-09 Score=71.38 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
+++++|.+|+|||||+|+++..... ......|.+.....+..+. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999998876654 3344556666555555543 5799999995
No 337
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.98 E-value=2.8e-08 Score=74.34 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=93.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCc--------------ccccccceeEEEE----------EEEEEe-cCcEEEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVH----------PLDFFT-NCGKIRFYCW 67 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~ 67 (173)
.+=|.|+||..+|||||++||..-.. .+-.++..|.+.. ..++.+ ++-.++++++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 36689999999999999999764100 0111122222211 122233 4567899999
Q ss_pred eCCCc-------------cccc-Cc---------------chhhcc--CCCEEEEEEECC----ChhhhhcHH-HHHHHH
Q 030686 68 DTAGQ-------------EKFG-GL---------------RDGYYI--HGQCAIIMFDVT----ARLTYKNVP-TWHRDL 111 (173)
Q Consensus 68 D~~G~-------------~~~~-~~---------------~~~~~~--~~~~~i~v~d~~----~~~s~~~~~-~~~~~~ 111 (173)
|+.|. +++. .- ++..++ ..=++++.-|-+ .++.+..+. ..+.++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99871 1110 01 111122 223566655555 345555544 366677
Q ss_pred hhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCC--CCChHHHHHHHH
Q 030686 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLA 168 (173)
Q Consensus 112 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~i~ 168 (173)
+.. ++|+++++|-.+.....-..-..++..+++++++++++.. .+.+..+++.++
T Consensus 177 k~i--gKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHh--CCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 666 9999999998887766555556678889999999988863 345555555543
No 338
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.98 E-value=1.7e-09 Score=81.05 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=69.1
Q ss_pred cccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc-HHHH----HHHHHcC
Q 030686 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQV----TFHRKKN 146 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~----~~~~~~~ 146 (173)
.+.|..+...+.+.++++++|+|+.+.. ..|...+.+...+.|+++|+||+|+..+... .+.. +.+...+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 4567777888888999999999997654 2345555555557899999999998654332 2222 3355566
Q ss_pred C---cEEEEccCCCCChHHHHHHHHH
Q 030686 147 L---QYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 147 ~---~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+ .++.+||+++.|++++++.+.+
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 5 4899999999999999999865
No 339
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.98 E-value=3.9e-09 Score=77.64 Aligned_cols=155 Identities=16% Similarity=0.234 Sum_probs=94.0
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCc------------------ccccccceeEEEEEEEE--------------
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF------------------EKKYEPTIGVEVHPLDF-------------- 55 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~-------------- 55 (173)
..+.-+++++++|...+|||||+..|..+.. .....++.|.++-....
T Consensus 128 ~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 128 EKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred CccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 4456679999999999999999876544311 12222333333221111
Q ss_pred -----EecCcEEEEEEEeCCCcccccCcchhhccC--CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030686 56 -----FTNCGKIRFYCWDTAGQEKFGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 56 -----~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.+++..--++|+|..|+++|-..+..-..+ .|...+++-++.. .-.+.+....+.- .-++|+.+|.+|+|
T Consensus 208 LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLAL-aL~VPVfvVVTKID 284 (641)
T KOG0463|consen 208 LDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLAL-ALHVPVFVVVTKID 284 (641)
T ss_pred ccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhh-hhcCcEEEEEEeec
Confidence 112223357899999999987665544332 5777777766543 1222222222211 12899999999999
Q ss_pred CccccccHHHHHHH----H--------------------------HcCCcEEEEccCCCCChHHHHH
Q 030686 129 VKNRQVKAKQVTFH----R--------------------------KKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 129 l~~~~~~~~~~~~~----~--------------------------~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+...+..++...+. + +.-|++|++|..+|+|+.-+.-
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 98766555443222 1 1226789999999999886543
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.96 E-value=3.6e-09 Score=70.34 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=40.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
..++|+++|.+|+|||||+|++..... ....+..|++.....+..+ -.+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKV-CKVAPIPGETKVWQYITLM---KRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCc-eeeCCCCCeeEeEEEEEcC---CCEEEEECcCC
Confidence 457899999999999999999776543 3335566666654444332 23789999993
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.95 E-value=3.2e-09 Score=71.51 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=42.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
.++++++|.||+|||||+|++.+... ....+..|+|.....+..+ ..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 48999999999999999999775543 3345667777765555443 25789999993
No 342
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.94 E-value=3.5e-09 Score=76.12 Aligned_cols=79 Identities=16% Similarity=0.043 Sum_probs=48.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEE--EEecCc---------------EEEEEEEeCCCcccccC-
Q 030686 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCG---------------KIRFYCWDTAGQEKFGG- 77 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~~~~~D~~G~~~~~~- 77 (173)
|+++|.||+|||||+|++....... ....++|..... +.+.+. ...++++|+||.....+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~--~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA--ANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc--ccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 5789999999999999977655422 112222322221 222221 13589999999543221
Q ss_pred ---cchhh---ccCCCEEEEEEECC
Q 030686 78 ---LRDGY---YIHGQCAIIMFDVT 96 (173)
Q Consensus 78 ---~~~~~---~~~~~~~i~v~d~~ 96 (173)
+...+ ++++|++++|+|..
T Consensus 79 ~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 22223 56799999999874
No 343
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=8e-09 Score=75.76 Aligned_cols=121 Identities=20% Similarity=0.139 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccc-cceeEEEEEEEEEe------cCc--------------------------
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFT------NCG-------------------------- 60 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~-------------------------- 60 (173)
-=|+++|.-..|||||++.|+.+.++.... +...+++....+.. ++.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 458999999999999999988877764322 12222222222211 110
Q ss_pred -------EEEEEEEeCCCccc-----------ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEE
Q 030686 61 -------KIRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 122 (173)
Q Consensus 61 -------~~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~iv 122 (173)
--.+.++||||.-+ |......|...+|.++++||+...+--++....+..++.+ .-.+-|
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiRV 216 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIRV 216 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeEE
Confidence 01367999999422 2223455678899999999998765545556666666655 445788
Q ss_pred EEeCCCCccccccH
Q 030686 123 CGNKVDVKNRQVKA 136 (173)
Q Consensus 123 v~nK~Dl~~~~~~~ 136 (173)
|+||.|..+.+.-.
T Consensus 217 VLNKADqVdtqqLm 230 (532)
T KOG1954|consen 217 VLNKADQVDTQQLM 230 (532)
T ss_pred EeccccccCHHHHH
Confidence 89999998865433
No 344
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.90 E-value=2.2e-09 Score=75.71 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=89.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc-ceeEEEEEEEEEecCcEEEEEEEeCCCc----------ccccCcc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~ 79 (173)
....+++++|.+|+|||+|++.++.......... +.|.+...--+. ..-.+.+.|.||. ..+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcchHhHhH
Confidence 3458999999999999999999876654433232 444443332232 3347888999992 1223344
Q ss_pred hhhccCCC---EEEEEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCccccc------cHHHH-------HHH
Q 030686 80 DGYYIHGQ---CAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV-------TFH 142 (173)
Q Consensus 80 ~~~~~~~~---~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~-------~~~ 142 (173)
..|+.+-+ -+++.+|++.+- +.... .+..+.+. ++|+.+|+||||-..... ..... +..
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 45544322 344455655432 22222 22333333 999999999999643111 11111 112
Q ss_pred HHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 143 RKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 143 ~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.....+|+.+|+.++.|+++++-.+.+
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhh
Confidence 223456788999999999998766654
No 345
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.89 E-value=1.9e-08 Score=70.53 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-------CcchhhccCC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLRDGYYIHG 86 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 86 (173)
.++.++|.|.+||||++.. +.+.+.+. .+..+++...+.........++++.|.||.-+.. .......+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~-l~g~~s~v-asyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSK-LTGTFSEV-AAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhh-hcCCCCcc-ccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999998 44555543 4455556655555555577789999999943211 1223346789
Q ss_pred CEEEEEEECCChhhh
Q 030686 87 QCAIIMFDVTARLTY 101 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~ 101 (173)
+.+++|.|+..|-+.
T Consensus 138 nli~~vld~~kp~~h 152 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSH 152 (358)
T ss_pred cEEEEEeeccCcccH
Confidence 999999999876443
No 346
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.88 E-value=6.1e-09 Score=76.69 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=95.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc----------------ceeEEEEEEEEE------e----------
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----------------TIGVEVHPLDFF------T---------- 57 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~------~---------- 57 (173)
.+.++.+.+.|..+.|||||+..|..+......-. +...+...+-+. .
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 45679999999999999999988776644221110 111222222111 0
Q ss_pred ---cCcEEEEEEEeCCCcccccCcch--hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030686 58 ---NCGKIRFYCWDTAGQEKFGGLRD--GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 58 ---~~~~~~~~~~D~~G~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
+...--+.|.|+.|++.+-..+. .+-.+.|..++++-+++..+ .+.+..--+.-. -..|++++++|+|+.++
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a-~~lPviVvvTK~D~~~d 270 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA-MELPVIVVVTKIDMVPD 270 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh-hcCCEEEEEEecccCcH
Confidence 11123477999999998764332 23446899999999988753 233322222221 28999999999999763
Q ss_pred cccH----HHHHHHH-------------------------HcCCcEEEEccCCCCChHHHHHHHH
Q 030686 133 QVKA----KQVTFHR-------------------------KKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 133 ~~~~----~~~~~~~-------------------------~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
.... +.....+ +.-.++|.+|+.+|+|++-+.+.+.
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 2211 1111111 1125789999999999987665543
No 347
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.88 E-value=5.1e-09 Score=71.79 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=41.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcc-------cccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
..+++++|.+|+|||||+|+|...... .......|+|.....+..+. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 368999999999999999998764321 12344557777777666543 4799999993
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.87 E-value=1.3e-08 Score=67.65 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=56.9
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHHHcCCcEEEEccCCCCCh
Q 030686 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~S~~~~~~i 160 (173)
.+.++|++++|+|+.++..-.. ......+.....++|+++|+||+|+.++....... .+...+....+++|++.+.|+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~ 83 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGK 83 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC-HHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccH
Confidence 4578999999999998642211 12222332223368999999999996543221112 222222233578999999999
Q ss_pred HHHHHHHHHH
Q 030686 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
+++++.+.+.
T Consensus 84 ~~L~~~l~~~ 93 (157)
T cd01858 84 GSLIQLLRQF 93 (157)
T ss_pred HHHHHHHHHH
Confidence 9999998653
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.87 E-value=5.5e-09 Score=70.45 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=60.9
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCC
Q 030686 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (173)
......+.++|++++|+|+.++...... . +.....+.|+++|+||+|+.+........+........++.+|+++
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 3345567899999999999876543221 1 2222236799999999999643221112233334455689999999
Q ss_pred CCChHHHHHHHHHHh
Q 030686 157 NYNFEKPFLYLARKL 171 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i 171 (173)
+.|++++.+.+...+
T Consensus 86 ~~gi~~L~~~l~~~l 100 (171)
T cd01856 86 GKGVKKLLKAAKKLL 100 (171)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999987753
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.86 E-value=1.2e-08 Score=68.85 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=41.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
..++++++|.+|+|||||++++...... ......+++.....+..+ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999998876653 334455566655545443 45789999994
No 351
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.2e-08 Score=72.68 Aligned_cols=144 Identities=18% Similarity=0.118 Sum_probs=93.4
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhh---C-------Cccc----ccccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT---G-------EFEK----KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~---~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
.+.+.++|.-+|....|||||-.++.. . ++.+ .-....|+++..-.+.++.....+--.|+||+..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 345679999999999999999877432 1 1100 1112446666666666666667788899999998
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-----cHHHHHHHHHcC---
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-----KAKQVTFHRKKN--- 146 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~--- 146 (173)
|-.+...-..+-|++|+|+.++|..--+. +..-.+.+...-..+++++||.|+.++.. ..+..++...++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQT--rEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQT--REHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcch--HHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 87766666677899999999998642111 22223333332334788899999985332 334445666665
Q ss_pred --CcEEEEcc
Q 030686 147 --LQYYEISA 154 (173)
Q Consensus 147 --~~~~~~S~ 154 (173)
++++.-||
T Consensus 208 d~~PvI~GSA 217 (449)
T KOG0460|consen 208 DNTPVIRGSA 217 (449)
T ss_pred CCCCeeecch
Confidence 45666554
No 352
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.85 E-value=3e-08 Score=65.80 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=54.6
Q ss_pred CEEEEEEECCChhhhhcHHHHHH--HHhhhcCCCCEEEEEeCCCCccccccHH-HHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHR--DLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~--~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
|++++|+|+.++.+.... ++. .+.. .++|+++|+||+|+.......+ ...+.......++.+|++++.|+.++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 689999999887654432 222 2222 4789999999999965321111 11232334566899999999999999
Q ss_pred HHHHHHH
Q 030686 164 FLYLARK 170 (173)
Q Consensus 164 ~~~i~~~ 170 (173)
++.+.+.
T Consensus 77 ~~~i~~~ 83 (155)
T cd01849 77 ESAFTKQ 83 (155)
T ss_pred HHHHHHH
Confidence 9988653
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.83 E-value=1.5e-08 Score=73.42 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=42.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
...++++++|.+|+|||||+|++....... .....|+|.....+.... .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 346899999999999999999987654332 245566666655554432 4789999997
No 354
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=2.2e-08 Score=65.38 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=52.5
Q ss_pred hccCCCEEEEEEECCChhhhh--cHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCC
Q 030686 82 YYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (173)
.+..+|++++|+|+.++.+.. .+..++... ..++|+++|+||+|+.++....+..+.....+..++++|+.++.+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 467899999999999876544 233333322 247899999999999654332333455556678899999998764
No 355
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.82 E-value=2.1e-08 Score=66.55 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=40.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
...+++++|.+++||||+++++.... .....++.|.+.....+..+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKIT---SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence 45789999999999999999977543 44456677766443322222 2689999999
No 356
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.79 E-value=3.4e-08 Score=71.93 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=43.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
...++++++|.+|+|||||+|++.+.... ...+..|+|.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA-KTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc-ccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 34689999999999999999997765432 3355667776655554432 47899999974
No 357
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.79 E-value=2e-08 Score=74.11 Aligned_cols=59 Identities=24% Similarity=0.248 Sum_probs=46.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
...++++++|.||+|||||||+|++... ....+.+|+|.....+..... +.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 4458899999999999999999776554 445667788888777765543 8899999954
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.76 E-value=6.6e-08 Score=70.07 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=60.2
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCC
Q 030686 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
.....+..+|++++|+|+..+.+.... ++..+ ..+.|+++|+||+|+.+........+.....+..++.+|++++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~---l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 88 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEI---RGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKG 88 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHH---HCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 345567899999999999876543321 11222 1378999999999996532112212223334567899999999
Q ss_pred CChHHHHHHHHHHh
Q 030686 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
.|+.++.+.+.+.+
T Consensus 89 ~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 89 KGVKKIIKAAKKLL 102 (276)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999988887643
No 359
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=8.3e-09 Score=73.92 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=65.6
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH--
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-- 139 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-- 139 (173)
..+.|.|+||++-.......-..-.|++++++..+...--.....-+..+.- ..=..++++-||+|+..++...+..
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei-M~LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI-MKLKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH-hhhceEEEEechhhhhhHHHHHHHHHH
Confidence 4678999999985443322222224666666655532111111111122211 1133578889999998765444333
Q ss_pred --HHHHH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 140 --TFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 140 --~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.|... .+.+++++||.-+.|++-+.++|.+++
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 23322 367899999999999999999998876
No 360
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=3.2e-07 Score=71.02 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=83.9
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030686 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
+...++.+-++|+|+||+|||||++.++...... ++..-..++++ +.++...++|.++|..- ..+ ....+-+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiTv-vsgK~RRiTflEcp~Dl--~~m-iDvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPITV-VSGKTRRITFLECPSDL--HQM-IDVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceEE-eecceeEEEEEeChHHH--HHH-HhHHHhh
Confidence 3445667889999999999999999976543211 22111112222 33577899999998432 111 2233558
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccccHHHH------H-HHHH-cCCcEEEEccCCC
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQV------T-FHRK-KNLQYYEISAKSN 157 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~------~-~~~~-~~~~~~~~S~~~~ 157 (173)
|++++++|.+-.-..+.+ .+++.+..+ +.| ++-|++..|+.......... . |... .++.+|.+|-..+
T Consensus 135 DLVlLlIdgnfGfEMETm-EFLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM-EFLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred heeEEEeccccCceehHH-HHHHHHhhc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 999999998855322222 234444443 555 67888999997644322211 1 2222 3677888886543
No 361
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=9.3e-08 Score=75.75 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=80.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCc--------------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
...-+++++-....|||||+..|+..+- ......+.|+|.....+..-.+.+.+.++|+|||-.|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 3456889999999999999999875421 01112244555555444444577899999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCC
Q 030686 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVD 128 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 128 (173)
+......+=+|++++++|+...-.-+.. ..+++. ..+...++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhh
Confidence 9888888889999999999876432322 122221 12556788899999
No 362
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.69 E-value=1.2e-08 Score=70.47 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=74.1
Q ss_pred EecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh----------hhhcHHHHHHHHhhh--cCCCCEEEE
Q 030686 56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL----------TYKNVPTWHRDLCRV--CENIPIVLC 123 (173)
Q Consensus 56 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~--~~~~p~ivv 123 (173)
.++-..+.|.+.|.+|+..-+.-|.+.+.+.-.+++++.++.-+ ..++.+.++..+..+ ..+.++|++
T Consensus 193 pfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlF 272 (359)
T KOG0085|consen 193 PFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 272 (359)
T ss_pred CcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEE
Confidence 34446678889999999988888999988887777766665321 222233344444443 268999999
Q ss_pred EeCCCCccccc------------------cHHHHHHHH----HcCC------cEEEEccCCCCChHHHHHHHHHHhh
Q 030686 124 GNKVDVKNRQV------------------KAKQVTFHR----KKNL------QYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 124 ~nK~Dl~~~~~------------------~~~~~~~~~----~~~~------~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+||.|+..+.. .....++.. ..+- --..+.|.+.+|+.-+|.++...++
T Consensus 273 LNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiL 349 (359)
T KOG0085|consen 273 LNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 349 (359)
T ss_pred echhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHH
Confidence 99999754221 111112221 1111 1234567788899999988877654
No 363
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.68 E-value=5.3e-08 Score=68.44 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=51.7
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCCh-------hhhhcHH---HHHHHHhhh--cCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-------LTYKNVP---TWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-------~s~~~~~---~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..++|+++|.+|+..-+.-|...+....++|+|+..+.- .+-+.++ +++..+... .....+|+++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 456799999999999999999999999999999987742 1222233 233333222 1467899999999
Q ss_pred CCc
Q 030686 128 DVK 130 (173)
Q Consensus 128 Dl~ 130 (173)
|+.
T Consensus 280 Dll 282 (379)
T KOG0099|consen 280 DLL 282 (379)
T ss_pred HHH
Confidence 974
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.68 E-value=6.3e-08 Score=64.24 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=39.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
...+++++|.+|+|||||+|.+....... .....+++........+ ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 45889999999999999999977544222 23334555554444432 35889999983
No 365
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.5e-08 Score=75.54 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=98.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh--CCc------c-c-------ccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT--GEF------E-K-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~--~~~------~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
-.+|.++..-.+||||..++++. +.. . . ......|++...--+.++.+++.+.++||||+-.|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 35789999999999999998653 111 0 0 011234677777777888899999999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC
Q 030686 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (173)
-.....++--|+++.|+|.+..-..+.+.-|...-+. ++|...++||+|...............+.+.
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrqadk~---~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF---KIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc---CCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 8888899999999999999987666777767554322 7898999999997765554444444444443
No 366
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.67 E-value=1.8e-07 Score=68.17 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCCcc-cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC
Q 030686 69 TAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (173)
Q Consensus 69 ~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (173)
.|||. +........+..+|++++|+|+.++.+... .++.... .+.|+++|+||+|+.+........+.....+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~ 81 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLADPEVTKKWIEYFEEQGI 81 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence 35543 222334456789999999999987654332 1222222 37899999999999653211122222334457
Q ss_pred cEEEEccCCCCChHHHHHHHHHH
Q 030686 148 QYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 148 ~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
.++.+|++++.|+.++.+.+.+.
T Consensus 82 ~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 82 KALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred eEEEEECCCcccHHHHHHHHHHH
Confidence 78999999999999999887654
No 367
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=9.3e-07 Score=61.98 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=72.2
Q ss_pred eEEEEEcCCCC--CHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 14 FKLVIVGDGGT--GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 14 ~~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..++++|.+|+ ||.+++.+|....+.....+.-.+.+..+++.-......+.+.=.+-...+.-.+........++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 45789999998 9999999987766655544444455555555322222233332222223333333334455688999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
|||.+....+..++.|+....-..-++ .+.++||.|..
T Consensus 85 vfdlse~s~l~alqdwl~htdinsfdi-llcignkvdrv 122 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDINSFDI-LLCIGNKVDRV 122 (418)
T ss_pred EEeccchhhhHHHHhhccccccccchh-heecccccccc
Confidence 999999999999999987543321122 34567898853
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.60 E-value=4.5e-06 Score=54.77 Aligned_cols=145 Identities=20% Similarity=0.195 Sum_probs=75.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCC-Ccc--------------ccc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQE--------------KFG 76 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-G~~--------------~~~ 76 (173)
..+||.+.|+||+||||++.++.. ....... +.+ -+.+.++..++...-|.+.|+. |.+ +|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e-~L~~~g~-kvg-Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE-KLREKGY-KVG-GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH-HHHhcCc-eee-eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 468999999999999999988542 2222211 121 2333445556666777888876 311 111
Q ss_pred Cc-----------chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHH
Q 030686 77 GL-----------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRK 144 (173)
Q Consensus 77 ~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 144 (173)
-. .+..+..+|++| +|---+-.+. ..++.+.+.+.. ...|++..+.+-+. ....+-.+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr------~P~v~~ik~ 151 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR------HPLVQRIKK 151 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC------ChHHHHhhh
Confidence 10 112234456554 4544332221 123334444333 47888877776543 223333444
Q ss_pred cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 145 KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 145 ~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+.-++. .+.+|=+.+++.+.+.+
T Consensus 152 ~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 152 LGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred cCCEEEE---EccchhhHHHHHHHHHh
Confidence 4444443 44455557777776654
No 369
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.1e-07 Score=69.13 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=97.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC--Cc------------cccccc---------------ceeEEEEEEEEEecCc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EF------------EKKYEP---------------TIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~------------~~~~~~---------------~~~~~~~~~~~~~~~~ 60 (173)
+...++++++|...+||||+-..++.- .. ...... .-|-+...-...++..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 456799999999999999997764431 00 000000 0011222222233445
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hhhcH--HHHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
...|++.|.||+..|......-..++|..++|+++...+ .|+.- ......+.+...-...++++||+|-+.-+..
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 678999999999999888777788999999999986432 22221 1233344444345568889999997653332
Q ss_pred HH--------HHHHHHHcC------CcEEEEccCCCCChHHHH
Q 030686 136 AK--------QVTFHRKKN------LQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 136 ~~--------~~~~~~~~~------~~~~~~S~~~~~~i~~~~ 164 (173)
.+ ...+.+..+ ..|+++|..+|.++.+..
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 22 223444322 458999999999988754
No 370
>PRK13796 GTPase YqeH; Provisional
Probab=98.58 E-value=4.5e-07 Score=68.22 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=57.0
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc-HHHH----HHHHHcCC---cEEEEccCCC
Q 030686 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQV----TFHRKKNL---QYYEISAKSN 157 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~----~~~~~~~~---~~~~~S~~~~ 157 (173)
.+.+++|+|+.+.. ..|...+.+...+.|+++|+||+|+...... ++.. .++...++ .++.+||+++
T Consensus 70 ~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g 144 (365)
T PRK13796 70 DALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG 144 (365)
T ss_pred CcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC
Confidence 34999999998743 2345555555558899999999999654322 2222 23445565 5799999999
Q ss_pred CChHHHHHHHHHH
Q 030686 158 YNFEKPFLYLARK 170 (173)
Q Consensus 158 ~~i~~~~~~i~~~ 170 (173)
.|++++++.+.+.
T Consensus 145 ~gI~eL~~~I~~~ 157 (365)
T PRK13796 145 HGIDELLEAIEKY 157 (365)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998653
No 371
>PRK13796 GTPase YqeH; Provisional
Probab=98.57 E-value=1.3e-07 Score=71.08 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc----ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
.++.++|.+|+|||||+|+|+.... .....+..|+|.....+..++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999875331 1123456677777777665433 3799999963
No 372
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.56 E-value=4.8e-07 Score=65.84 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=57.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec---------------CcEEEEEEEeCCCc--
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------------CGKIRFYCWDTAGQ-- 72 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~D~~G~-- 72 (173)
+...+++.++|.|++|||||.|.+.........-|...++...-.+.+. .....++++|++|-
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 4467899999999999999999987766654444433222222222211 12467899999873
Q ss_pred --ccccCcchhh---ccCCCEEEEEEECCC
Q 030686 73 --EKFGGLRDGY---YIHGQCAIIMFDVTA 97 (173)
Q Consensus 73 --~~~~~~~~~~---~~~~~~~i~v~d~~~ 97 (173)
.....+-..| ++++|+++-|+++..
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2333444444 567899999988763
No 373
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.54 E-value=2.8e-07 Score=69.24 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc----ccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
.+++++|.+|+|||||+|+++.... .....+..|+|.....+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 4899999999999999999876432 123345667777666665432 257999999653
No 374
>PRK12288 GTPase RsgA; Reviewed
Probab=98.53 E-value=2.7e-07 Score=68.73 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccc--cc----cceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK--YE----PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
.++++|.+|+|||||+|+|+....... .. ....+|....-+.+.+.. .++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 378999999999999999876533211 01 111233333333443222 489999987654
No 375
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.50 E-value=3.9e-07 Score=77.69 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=65.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCccccc----c--cceeEEEEEEEEEecCcEEEEEEEeCCCc----c----cccCcchh
Q 030686 16 LVIVGDGGTGKTTFVKRHLTGEFEKKY----E--PTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----E----KFGGLRDG 81 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~----~~~~~~~~ 81 (173)
.+|+|++|+||||++.. .+-.++-.. . ...+-+.. ....+. -.-.++||+|. + .....|..
T Consensus 114 YlviG~~gsGKtt~l~~-sgl~~pl~~~~~~~~~~~~~~t~~-c~wwf~---~~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQN-SGLKFPLAERLGAAALRGVGGTRN-CDWWFT---DEAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHh-CCCCCcCchhhccccccCCCCCcc-cceEec---CCEEEEcCCCccccCCCcccccHHHHHH
Confidence 68999999999999998 443332211 0 01111111 111111 13458999992 1 22334666
Q ss_pred hcc---------CCCEEEEEEECCChh-----hh----hcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc
Q 030686 82 YYI---------HGQCAIIMFDVTARL-----TY----KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131 (173)
Q Consensus 82 ~~~---------~~~~~i~v~d~~~~~-----s~----~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~ 131 (173)
++. -.+++|+++|+.+-- .. ..++..+.++.+.. -+.||.+++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 543 379999999998532 11 23344445554443 4899999999999864
No 376
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.50 E-value=1.9e-06 Score=60.66 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=51.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--CcccccccceeEEEEEEEEEec---CcEEEEEEEeCCCcccccC------cc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN---CGKIRFYCWDTAGQEKFGG------LR 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~G~~~~~~------~~ 79 (173)
.+-.-|+|+|++++|||+|+|++++. .+... .....+|...+..... +....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~-~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVM-DTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEec-CCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 34567899999999999999998877 44322 1112222222222111 2356899999999643322 12
Q ss_pred hhhccC--CCEEEEEEECCC
Q 030686 80 DGYYIH--GQCAIIMFDVTA 97 (173)
Q Consensus 80 ~~~~~~--~~~~i~v~d~~~ 97 (173)
...+.. ++++|+..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 222333 788888777664
No 377
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.49 E-value=1.9e-07 Score=61.82 Aligned_cols=59 Identities=27% Similarity=0.310 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccc------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
-.++++|++|+|||||+|.|+...... .......+|....-+..+.. ..++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 468999999999999999987653211 11111123333333333322 367899996544
No 378
>PRK01889 GTPase RsgA; Reviewed
Probab=98.47 E-value=1.3e-06 Score=65.60 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=58.2
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHH-HcCCcEEEEccCCCCChH
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-KKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~ 161 (173)
..++|.+++|+++...-....+..++...... ++|.++|+||+||.+... .....+.. ..+.+++.+|++++.|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~-~~~~~~~~~~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDAE-EKIAEVEALAPGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCHH-HHHHHHHHhCCCCcEEEEECCCCccHH
Confidence 57889999999997443434445555555444 788899999999975411 11112221 346789999999999999
Q ss_pred HHHHHHH
Q 030686 162 KPFLYLA 168 (173)
Q Consensus 162 ~~~~~i~ 168 (173)
++.+++.
T Consensus 187 ~L~~~L~ 193 (356)
T PRK01889 187 VLAAWLS 193 (356)
T ss_pred HHHHHhh
Confidence 9998874
No 379
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.46 E-value=5.3e-06 Score=61.24 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=56.4
Q ss_pred cEEEEEEEeCCCcccccCc----chhh--------ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGL----RDGY--------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
..+.+.++||||....... ...+ -...+..++|.|++... +.+.+ ...+.+. -.+--+|+||.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh--CCCCEEEEECC
Confidence 4478999999996432211 1111 12467889999998543 22222 1222221 12346778999
Q ss_pred CCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
|...... ...+.+...+.++..++ +|++++++
T Consensus 270 D~t~~~G--~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 270 DGTAKGG--VVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCCcc--HHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 9654422 23466677799988887 77777654
No 380
>PRK12289 GTPase RsgA; Reviewed
Probab=98.45 E-value=4.6e-07 Score=67.59 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCccccccccee-------EEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-------VEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
.++++|++|+|||||+|+|+...... .....+ +|....-+...+.. .++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~-t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELR-VGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccc-cccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 37999999999999999987543221 111112 44444444443322 68999996543
No 381
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.44 E-value=1.2e-06 Score=65.42 Aligned_cols=81 Identities=17% Similarity=-0.018 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc-cc-ccccc-eeEEEEEEEEEecC---------------cEEEEEEEeCCCcccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEF-EK-KYEPT-IGVEVHPLDFFTNC---------------GKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~-~~-~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~D~~G~~~~ 75 (173)
+++.++|.|++|||||.+.+..... .. .+..+ ......... +.+ ....+.+.|+||....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~--v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVN--PSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEE--echhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 7899999999999999999765554 22 22111 111111111 111 1246789999995432
Q ss_pred ----cCcch---hhccCCCEEEEEEECC
Q 030686 76 ----GGLRD---GYYIHGQCAIIMFDVT 96 (173)
Q Consensus 76 ----~~~~~---~~~~~~~~~i~v~d~~ 96 (173)
..+.. ..++.+|++++|++..
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 12222 2467899999999985
No 382
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=1.3e-06 Score=62.15 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccc----ccccceeEEEEEEEEEecCcEEEEEEEeCCCc-------ccccCcc--
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EKFGGLR-- 79 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-------~~~~~~~-- 79 (173)
.++|+.+|..|.|||||++.|..-++.. ...|.......+......+..+++++.||.|. +.|+.+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 4899999999999999999977655432 23334444444444444556688999999982 2222211
Q ss_pred ------------------hhhccC--CCEEEEEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 80 ------------------DGYYIH--GQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 80 ------------------~~~~~~--~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
-..++. .++++|.+..+ +.++..+.- ....+.. .+.+|-++-|.|...
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Lds---kVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLDS---KVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHhh---hhhhHHHHHHhhhhh
Confidence 111333 46666666655 345554442 2333333 555677778988654
No 383
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.41 E-value=7.9e-06 Score=59.09 Aligned_cols=95 Identities=12% Similarity=-0.029 Sum_probs=56.9
Q ss_pred cEEEEEEEeCCCcccccCcch-------hh-----ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRD-------GY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~-------~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
..+.+.++||||......... .. -...|..++|+|++... +.+. ....+.+.. .+--+++||.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~--~~~g~IlTKl 227 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV--GLTGIILTKL 227 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC--CCCEEEEEcc
Confidence 347899999999654322110 01 12378999999998542 2222 223333221 1346778999
Q ss_pred CCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
|...+.. ...+.....+.++..++ +|++++++
T Consensus 228 De~~~~G--~~l~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 228 DGTAKGG--IILSIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred CCCCCcc--HHHHHHHHHCcCEEEEe--CCCChHhC
Confidence 9866533 23455556678888887 77777655
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=98.37 E-value=8.2e-07 Score=65.79 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=56.1
Q ss_pred EEEEEEEeCCCcccccC-cc---hhh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGG-LR---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... +. ..+ ....+..++|.|+.... +.......+.... + .--+++||.|......
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~-~-~~giIlTKlD~~~~~G 296 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV-G-IDGVILTKVDADAKGG 296 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC-C-CCEEEEeeecCCCCcc
Confidence 35789999999653221 11 111 12468889999997643 2222122222211 2 2356789999866433
Q ss_pred cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
. ....+...+.++..++ +|++++++.
T Consensus 297 ~--~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 297 A--ALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred H--HHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 2 3455556688888886 788887654
No 385
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.35 E-value=8.6e-06 Score=62.16 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=47.3
Q ss_pred EEEEEEEeCCCcccccC-cchh---h--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGG-LRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... +... + ....+-+++|.|++..... ......+.+. -.+--+++||.|...+..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~--~~~~g~IlTKlD~~argG 256 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS--VDVGSVIITKLDGHAKGG 256 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc--cCCcEEEEECccCCCCcc
Confidence 57899999999543221 1111 1 2246789999998755322 2222333332 224567789999865432
Q ss_pred cHHHHHHHHHcCCcEEEE
Q 030686 135 KAKQVTFHRKKNLQYYEI 152 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~ 152 (173)
. ........+.++..+
T Consensus 257 ~--aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 257 G--ALSAVAATKSPIIFI 272 (429)
T ss_pred H--HhhhHHHHCCCeEEE
Confidence 2 234444555555544
No 386
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.3e-05 Score=63.29 Aligned_cols=66 Identities=15% Similarity=0.306 Sum_probs=40.7
Q ss_pred EEEEEeCCCccc---ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccc
Q 030686 63 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (173)
Q Consensus 63 ~~~~~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 132 (173)
.+.+.|.||-.- ..+-...+...+|++|+|.++.+..... .++++....+ .+| +.++.||.|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~---~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSE---EKPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhc---cCCcEEEEechhhhhcc
Confidence 466888898543 2333445667899999999987654322 2334444433 355 5566678897653
No 387
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=3.5e-06 Score=65.72 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=85.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCc-----ccc-----------cccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEF-----EKK-----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
.-+|.+.-.-.+||||+-++.+...- .+. .....|++...--..+....+.+.++||||+-.|.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 35677778888999999998663210 000 01112334433333344457889999999999998
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHH
Q 030686 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF 141 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 141 (173)
.--...++--|+++++++...+-.-+...-| ++..++ ++|-+.++||.|......-.-...+
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry--~vP~i~FiNKmDRmGa~~~~~l~~i 180 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY--NVPRICFINKMDRMGASPFRTLNQI 180 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc--CCCeEEEEehhhhcCCChHHHHHHH
Confidence 8888889999999999999877544554445 344454 9999999999998765543333333
No 388
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.33 E-value=1.3e-06 Score=62.19 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccc--c----ccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK--Y----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
-.++++|.+|+|||||+|+++....... . ....++|....-+... . -.++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~---~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-G---GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-C---cEEEeCCCcccc
Confidence 4689999999999999999875432111 1 1111244443334432 2 268999997654
No 389
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.31 E-value=3.2e-06 Score=45.55 Aligned_cols=43 Identities=14% Similarity=0.352 Sum_probs=30.4
Q ss_pred CCEEEEEEECCChh--hhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030686 86 GQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 86 ~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.++++|++|++... +.+.-..++..++...+++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 68999999999654 55555678888888888999999999998
No 390
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.30 E-value=9.7e-06 Score=58.67 Aligned_cols=94 Identities=18% Similarity=0.043 Sum_probs=68.4
Q ss_pred ccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH--HHHHHHHHcCCcEEE
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYE 151 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~ 151 (173)
...+.+.-..+.|-.++|+.+.+|+ +...+.+++-..... ++..++++||+||.+..... +........+.+.+.
T Consensus 69 kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 69 KNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF 146 (301)
T ss_pred cCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence 3344555556688888888888876 444444554444443 77778889999998765555 345677788999999
Q ss_pred EccCCCCChHHHHHHHHHH
Q 030686 152 ISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~ 170 (173)
+|+++++++.++.+.+...
T Consensus 147 ~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 147 VSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ecCcCcccHHHHHHHhcCC
Confidence 9999999999999887643
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=2e-06 Score=62.14 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCc------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
..+++|.+|+|||||+|+|..... .......-.+|....-+.+++.+ .++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 578899999999999999775322 11111222344444444443222 468999987654
No 392
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.27 E-value=6e-06 Score=54.32 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=36.5
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.+.+.++||+|.... ...++..+|.++++....-.+.+.-++- ..+. ..=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh-----hcCEEEEeCCC
Confidence 578899999986532 2348889999999888773332222211 2221 12277889987
No 393
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.26 E-value=2.7e-06 Score=62.05 Aligned_cols=59 Identities=25% Similarity=0.203 Sum_probs=36.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccccc--c----cceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY--E----PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
-.++++|++|+|||||+|.+++....... . ...+++.....+..... ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 46899999999999999997754332111 1 11123333333333322 258999998765
No 394
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.25 E-value=2.6e-05 Score=52.42 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeC-CCc---------------cccc--
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT-AGQ---------------EKFG-- 76 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~G~---------------~~~~-- 76 (173)
||++.|++|+||||++.+++..... ...+..|.-. .....++...-|.+.|. .|. .+|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~Gf~t--~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGGFYT--EEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEEEEE--EEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc-cCCccceEEe--ecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 6899999999999999996643211 1122333222 23334455555666666 331 0111
Q ss_pred -----Cc----chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcC
Q 030686 77 -----GL----RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 146 (173)
Q Consensus 77 -----~~----~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (173)
.. ....+..++ ++++|---+-.+ ....|.+.+.... +++|++.++.+.- ...-..++....+
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~-----~~~~l~~i~~~~~ 149 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRS-----DNPFLEEIKRRPD 149 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS-------SCCHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCC-----CcHHHHHHHhCCC
Confidence 11 111123445 566665433111 1123333443332 4788888887763 1112345566667
Q ss_pred CcEEEEccCCCCCh
Q 030686 147 LQYYEISAKSNYNF 160 (173)
Q Consensus 147 ~~~~~~S~~~~~~i 160 (173)
+.+++++..+.+.+
T Consensus 150 ~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 150 VKIFEVTEENRDAL 163 (168)
T ss_dssp SEEEE--TTTCCCH
T ss_pred cEEEEeChhHHhhH
Confidence 88888877665544
No 395
>PRK00098 GTPase RsgA; Reviewed
Probab=98.23 E-value=3.4e-06 Score=61.89 Aligned_cols=58 Identities=21% Similarity=0.105 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccccc--cc----ceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EP----TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
..++++|++|+|||||+|.++........ .. ...+|.....+..++. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 36899999999999999997754322110 00 0113333333333322 36899999764
No 396
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.22 E-value=8.7e-06 Score=56.64 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=37.4
Q ss_pred EEEEEeC-CCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030686 63 RFYCWDT-AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 63 ~~~~~D~-~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
.+.+.|| +|.+.+ .+....++|.+++|+|.+.+ |+....+. .++.+...-.++.+|+||.|-.
T Consensus 135 e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~~-sl~taeri-~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSYK-SLRTAERI-KELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhh---ccccccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHHhCCceEEEEEeeccch
Confidence 3445555 234432 34456689999999998754 33433332 2332222237899999999965
No 397
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.19 E-value=9.7e-06 Score=53.93 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCcccccCcchh--------hccCCCEEEEEEECCChhhh-hcHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030686 61 KIRFYCWDTAGQEKFGGLRDG--------YYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (173)
.....++|++|-......... ..-..+.+++++|+...... .....+..++... + ++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a--d---~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA--D---RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC--C---EEEEecccC
Confidence 356788999996433322221 22357899999998654321 1222333444332 2 667899996
No 398
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.19 E-value=1.9e-05 Score=53.21 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=45.7
Q ss_pred EEEEEEEeCCCcccccCc----chhh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGGL----RDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++|++|....... ...+ ....+.+++|+|...... ...+...+.+.. + ..-++.||.|...+..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~-~-~~~viltk~D~~~~~g 156 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL-G-ITGVILTKLDGDARGG 156 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC-C-CCEEEEECCcCCCCcc
Confidence 456888999996432111 1111 124899999999875432 223334443332 2 2456779999866443
Q ss_pred cHHHHHHHHHcCCcE
Q 030686 135 KAKQVTFHRKKNLQY 149 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~ 149 (173)
.. .+.+...+.++
T Consensus 157 ~~--~~~~~~~~~p~ 169 (173)
T cd03115 157 AA--LSIRAVTGKPI 169 (173)
T ss_pred hh--hhhHHHHCcCe
Confidence 22 33555555554
No 399
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.16 E-value=3.7e-06 Score=64.36 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=43.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
.+.|.++|.||+||||.||.|.+++-.. ...|+|-|..-.++.+. -.+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls---~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLS---PSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcC---CCceecCCCC
Confidence 5899999999999999999988777554 47788877766666543 2467899999
No 400
>PRK13695 putative NTPase; Provisional
Probab=98.15 E-value=0.00011 Score=49.58 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=29.7
Q ss_pred CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 116 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 116 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+.|++++.+|.... .....+....+..+++++ .+|=+++.+.+.+.+
T Consensus 125 ~~~~~i~v~h~~~~~-----~~~~~i~~~~~~~i~~~~---~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 125 SEKPVIATLHRRSVH-----PFVQEIKSRPGGRVYELT---PENRDSLPFEILNRL 172 (174)
T ss_pred CCCeEEEEECchhhH-----HHHHHHhccCCcEEEEEc---chhhhhHHHHHHHHH
Confidence 378999999985321 123345555666777774 445557777777655
No 401
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.12 E-value=1.8e-05 Score=51.45 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=62.9
Q ss_pred EEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCC
Q 030686 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 97 (173)
.-|.+|+|||++.-.+... +......+.-.+.+. ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~-~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALA-LAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHH-HHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 3467899999997664322 111111122122111 111122789999999743 334456788999999999976
Q ss_pred hhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030686 98 RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 98 ~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
..++..+...++.+.+.....++.+++|+.+..
T Consensus 78 ~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 344444444555554443456788999999754
No 402
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=6.8e-06 Score=69.29 Aligned_cols=114 Identities=19% Similarity=0.160 Sum_probs=63.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccc-cceeEEEEEEEEEec-CcEEEEEEEeCCCcc--------cccCcchhh---
Q 030686 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTN-CGKIRFYCWDTAGQE--------KFGGLRDGY--- 82 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~--------~~~~~~~~~--- 82 (173)
-+|+|++|+||||++.. .+-.++-... ...+..... +..++ .-+-.-.++||.|-. .-+..|..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 57899999999999876 4444432110 011111110 11111 112245688998821 223345544
Q ss_pred ------ccCCCEEEEEEECCChhhh---------hcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc
Q 030686 83 ------YIHGQCAIIMFDVTARLTY---------KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131 (173)
Q Consensus 83 ------~~~~~~~i~v~d~~~~~s~---------~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~ 131 (173)
.+..+++|+.+|+.+--+. ..++.-+.++.... -..|+.+++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2357999999999853211 12222333443332 4899999999999865
No 403
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=2.7e-05 Score=59.92 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=76.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC------------cccc--cccceeEEEEEEEEE----------------ecCcEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGE------------FEKK--YEPTIGVEVHPLDFF----------------TNCGKI 62 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~------------~~~~--~~~~~~~~~~~~~~~----------------~~~~~~ 62 (173)
-.++.++.....|||||...|+... +... .....++++...-+. -++..+
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 3567888999999999999876531 1100 011112332221111 133467
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030686 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
-+.++|.||+-.|.+.....++-.|++++|+|.-+.-..+.-.-+...+.+ ++.-+++.||.|..
T Consensus 99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh---hccceEEeehhhHH
Confidence 889999999999999988999999999999999887655554444455544 33445668999953
No 404
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.05 E-value=6.3e-06 Score=59.52 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=42.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCc----ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
..++++.|+|.||+|||+|+|++..... ........|++....+...-...-.+.+.||||.-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil 207 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGIL 207 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcC
Confidence 3568999999999999999998653221 12233455677666553222233458899999954
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=1.2e-05 Score=60.63 Aligned_cols=92 Identities=8% Similarity=0.024 Sum_probs=50.5
Q ss_pred EEEEEEEeCCCcccccCc----chhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGGL----RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|....... ...++. ..+.+++|+|++... +++......+... + .--+++||.|......
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~--~-idglI~TKLDET~k~G 394 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI--H-IDGIVFTKFDETASSG 394 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC--C-CCEEEEEcccCCCCcc
Confidence 368999999996432211 122222 346778888876432 2333333444331 1 2356689999876433
Q ss_pred cHHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 135 KAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
. ..+++...+.++..++ +|+++.
T Consensus 395 ~--iLni~~~~~lPIsyit--~GQ~VP 417 (436)
T PRK11889 395 E--LLKIPAVSSAPIVLMT--DGQDVK 417 (436)
T ss_pred H--HHHHHHHHCcCEEEEe--CCCCCC
Confidence 2 3466666677765553 344444
No 406
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=5.3e-05 Score=57.02 Aligned_cols=138 Identities=12% Similarity=-0.005 Sum_probs=68.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccc---ccccceeEEEE---------------EEEEE-e-----------cCcEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVH---------------PLDFF-T-----------NCGKI 62 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~---------------~~~~~-~-----------~~~~~ 62 (173)
.-.++++|++|+||||++..|....... ........+.. ...+. . .....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3578899999999999999876431100 00000101110 00000 0 11345
Q ss_pred EEEEEeCCCcccccCcc---hhhc---cCCCEEEEEEECCChh-hhhcHHHHHHHHhhhc-CC--CCEEEEEeCCCCccc
Q 030686 63 RFYCWDTAGQEKFGGLR---DGYY---IHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC-EN--IPIVLCGNKVDVKNR 132 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~---~~~~---~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~-~~--~p~ivv~nK~Dl~~~ 132 (173)
.+.++||+|........ ...+ ....-.++|++++... ....+.+.+....... .. -+--+++||.|....
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 78999999965332211 1112 2234568899988643 3233322222221110 00 123466799997664
Q ss_pred cccHHHHHHHHHcCCcEEEE
Q 030686 133 QVKAKQVTFHRKKNLQYYEI 152 (173)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~ 152 (173)
-.. ..++....+.++..+
T Consensus 297 ~G~--~l~~~~~~~lPi~yv 314 (374)
T PRK14722 297 LGG--VLDTVIRYKLPVHYV 314 (374)
T ss_pred ccH--HHHHHHHHCcCeEEE
Confidence 322 345555566665554
No 407
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=0.00013 Score=57.14 Aligned_cols=91 Identities=11% Similarity=0.154 Sum_probs=49.5
Q ss_pred EEEEEEEeCCCcccccCcchh---hcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030686 61 KIRFYCWDTAGQEKFGGLRDG---YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
.+.+.++||+|.......... .+. .....++|++.+. +...+...+..+.. ..+.-+|+||.|.....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~---~~~~gvILTKlDEt~~l-- 500 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH---AKPQGVVLTKLDETGRF-- 500 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh---hCCeEEEEecCcCccch--
Confidence 468899999996432211000 011 1234566677653 22333333444333 34567889999986543
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 136 AKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
-.........+.++..++ +|..+
T Consensus 501 G~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 501 GSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hHHHHHHHHhCCCEEEEe--CCCCc
Confidence 234566667777766663 34444
No 408
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.98 E-value=6.3e-06 Score=55.94 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=42.9
Q ss_pred EEEEEEEeCCCcccccCc--c-hhh--ccCCCEEEEEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGGL--R-DGY--YIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~--~-~~~--~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.....++++.|......+ . ..+ .-..+.++.|+|+..-.....+.. +..++... + ++++||+|+.+...
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A--D---vIvlnK~D~~~~~~ 158 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA--D---VIVLNKIDLVSDEQ 158 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---S---EEEEE-GGGHHHH-
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc--C---EEEEeccccCChhh
Confidence 356677788885444333 0 111 224689999999976533333333 33344322 2 67789999987663
Q ss_pred c-HHHHHHHHHc
Q 030686 135 K-AKQVTFHRKK 145 (173)
Q Consensus 135 ~-~~~~~~~~~~ 145 (173)
. ....+..++.
T Consensus 159 ~i~~~~~~ir~l 170 (178)
T PF02492_consen 159 KIERVREMIREL 170 (178)
T ss_dssp -HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3 4444444443
No 409
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.96 E-value=3e-06 Score=58.32 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=47.6
Q ss_pred EEEEEEEeCCCcccccC----cchhhc--cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGG----LRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
++.+.++||+|...... ....++ ...+-+++|.+++.... .+. ......+.. +. --+++||.|...+..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~-~~-~~lIlTKlDet~~~G 157 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAF-GI-DGLILTKLDETARLG 157 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHS-ST-CEEEEESTTSSSTTH
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhcc-cC-ceEEEEeecCCCCcc
Confidence 36799999999543321 111111 15678999999886542 222 222222221 22 245589999866542
Q ss_pred cHHHHHHHHHcCCcEEEEc
Q 030686 135 KAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (173)
....++...+.++-.++
T Consensus 158 --~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 158 --ALLSLAYESGLPISYIT 174 (196)
T ss_dssp --HHHHHHHHHTSEEEEEE
T ss_pred --cceeHHHHhCCCeEEEE
Confidence 24566667777765553
No 410
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.92 E-value=9.5e-06 Score=60.39 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=44.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
.+.+++.|+|.|++||||+||+|..+.. .....+.|.|..-.++..+ -.+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheecc---CCceeccCCce
Confidence 4569999999999999999999876664 4446677777665566544 35788999994
No 411
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.92 E-value=8.1e-05 Score=57.95 Aligned_cols=77 Identities=13% Similarity=0.064 Sum_probs=47.3
Q ss_pred EecCcE-EEEEEEeCCCcc-------------cccCcchhhccCCCEEEEEEECCChhhh-hcHHHHHHHHhhhcCCCCE
Q 030686 56 FTNCGK-IRFYCWDTAGQE-------------KFGGLRDGYYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPI 120 (173)
Q Consensus 56 ~~~~~~-~~~~~~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ 120 (173)
.+.+.+ -...+.|.||.- ..-.+..+|..+.+++|+|+--..-+.- ..+.++...+... +...
T Consensus 405 tVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRT 482 (980)
T KOG0447|consen 405 NVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRT 482 (980)
T ss_pred eecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCee
Confidence 334433 357789999932 1224567788899999999864432211 1223334443332 5667
Q ss_pred EEEEeCCCCccccc
Q 030686 121 VLCGNKVDVKNRQV 134 (173)
Q Consensus 121 ivv~nK~Dl~~~~~ 134 (173)
|+|++|.|+...+.
T Consensus 483 IfVLTKVDlAEknl 496 (980)
T KOG0447|consen 483 IFVLTKVDLAEKNV 496 (980)
T ss_pred EEEEeecchhhhcc
Confidence 99999999987543
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=0.00012 Score=56.05 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCc---cccccc--------------------ceeEEEEEEEEE-------ecCcEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEF---EKKYEP--------------------TIGVEVHPLDFF-------TNCGKI 62 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~--------------------~~~~~~~~~~~~-------~~~~~~ 62 (173)
.-.++++|++|+||||++..+..... ...... ..|.......-. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999987654210 000000 001111000000 011235
Q ss_pred EEEEEeCCCcccccC----cchhhc--cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH
Q 030686 63 RFYCWDTAGQEKFGG----LRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (173)
.+.++||+|-..... ....+. ....-.++|+|++... +.+......+.. --+--+++||.|.......
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~---~~~~~~I~TKlDEt~~~G~- 344 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQG---HGIHGCIITKVDEAASLGI- 344 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcC---CCCCEEEEEeeeCCCCccH-
Confidence 678999998543211 111111 1234677888888432 223333333322 1123566899998664322
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCh
Q 030686 137 KQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 137 ~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
...++...+.++..++ +|.++
T Consensus 345 -~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 345 -ALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred -HHHHHHHhCCCEEEEE--CCCCc
Confidence 3456666676666553 44444
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=97.88 E-value=0.00011 Score=56.51 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=48.1
Q ss_pred EEEEEEEeCCCcccccC-cch---hh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGG-LRD---GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... ... .+ .-..+.+++|+|+... +++.+....+.+.. + ..-+|+||.|...+..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~-~-i~giIlTKlD~~~rgG 257 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL-G-LTGVILTKLDGDARGG 257 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC-C-CCEEEEeCccCccccc
Confidence 46799999999543211 111 11 1246778999998754 22333333333321 1 1356679999755433
Q ss_pred cHHHHHHHHHcCCcEEEEcc
Q 030686 135 KAKQVTFHRKKNLQYYEISA 154 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~ 154 (173)
. ........+.++..+..
T Consensus 258 ~--alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 258 A--ALSIRAVTGKPIKFIGT 275 (433)
T ss_pred H--HHHHHHHHCcCEEEEeC
Confidence 2 44556666777665543
No 414
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.88 E-value=0.0002 Score=55.18 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcccccCc----ch--hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc
Q 030686 62 IRFYCWDTAGQEKFGGL----RD--GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~----~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~ 134 (173)
..+.++||+|....... .. .....+|.+++|+|++... +.......+.. ..+ .-+|+||.|...+..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~---~l~i~gvIlTKlD~~a~~G 249 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE---AVGIGGIIITKLDGTAKGG 249 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh---cCCCCEEEEecccCCCccc
Confidence 47899999996543211 01 1133578999999987652 22222223322 333 356789999765432
Q ss_pred cHHHHHHHHHcCCcEEEEc
Q 030686 135 KAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (173)
.........+.++..++
T Consensus 250 --~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 250 --GALSAVAETGAPIKFIG 266 (437)
T ss_pred --HHHHHHHHHCcCEEEEe
Confidence 23455556666665554
No 415
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=0.00028 Score=54.32 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=50.7
Q ss_pred EEEEEEEeCCCccccc----Ccchhhcc---CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc
Q 030686 61 KIRFYCWDTAGQEKFG----GLRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (173)
.+.+.++||+|..... .....++. ...-.++|++++... ..+......+... + +--+++||.|.....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~--~-~~~vI~TKlDet~~~ 373 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL--P-LDGLIFTKLDETSSL 373 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC--C-CCEEEEecccccccc
Confidence 4688999999964332 11222333 234667788876432 2233323333221 1 225778999986543
Q ss_pred ccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 134 VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
. ...++....+.++..++ +|.++
T Consensus 374 G--~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 374 G--SILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred c--HHHHHHHHHCCCEEEEe--CCCCC
Confidence 3 35567777777766664 44444
No 416
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.85 E-value=8.4e-05 Score=55.96 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=67.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccccccccee-EEEEEEEE-----------------Ee------------cCcEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDF-----------------FT------------NCGKI 62 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~-----------------~~------------~~~~~ 62 (173)
.-.|+++|+.|+||||-+-.|.....-.......+ ++.+...+ .+ .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56789999999999988777554332011111111 11111110 00 11346
Q ss_pred EEEEEeCCCcccccC----cchhhccC--CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCE-EEEEeCCCCcccccc
Q 030686 63 RFYCWDTAGQEKFGG----LRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVK 135 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~----~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~ 135 (173)
.+.++||.|...+.. ....++.. ..-..+|++++... +++..-+..+. ..|+ -+++||.|.......
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~----~~~i~~~I~TKlDET~s~G~ 356 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFS----LFPIDGLIFTKLDETTSLGN 356 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhc----cCCcceeEEEcccccCchhH
Confidence 789999999654432 23333333 34455577776432 34443334433 3333 355799997654322
Q ss_pred HHHHHHHHHcCCcEEEE
Q 030686 136 AKQVTFHRKKNLQYYEI 152 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~ 152 (173)
..+...+.+.++-.+
T Consensus 357 --~~s~~~e~~~PV~Yv 371 (407)
T COG1419 357 --LFSLMYETRLPVSYV 371 (407)
T ss_pred --HHHHHHHhCCCeEEE
Confidence 244455555554443
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.84 E-value=0.00037 Score=53.58 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=49.5
Q ss_pred EEEEEEEeCCCcccccC-cch---hh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGG-LRD---GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... ... .+ .-..+.+++|+|+.... ........+.... + ..-++.||.|...+..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v-~-i~giIlTKlD~~~~~G 256 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL-G-LTGVVLTKLDGDARGG 256 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC-C-CCEEEEeCccCccccc
Confidence 46789999999543211 111 11 22468889999987542 3333334443322 1 2356689999755443
Q ss_pred cHHHHHHHHHcCCcEEEEcc
Q 030686 135 KAKQVTFHRKKNLQYYEISA 154 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~ 154 (173)
. ....+...+.++..+..
T Consensus 257 ~--~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 257 A--ALSVRSVTGKPIKFIGV 274 (428)
T ss_pred H--HHHHHHHHCcCEEEEeC
Confidence 3 45566666777666543
No 418
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.83 E-value=1.3e-05 Score=53.98 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (173)
.-+++.||+|+||||+++.|+... ....+...+|+.+.....++..|.|.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fv 54 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFV 54 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeC
Confidence 457889999999999999977555 33233333455555555666555543
No 419
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.83 E-value=0.00085 Score=49.74 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=49.8
Q ss_pred EEEEEEeCCCcccccCcchhhcc--------CCCEEEEEEECCChhhhhc-HHH-HHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYI--------HGQCAIIMFDVTARLTYKN-VPT-WHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~~-~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
....++++.|..........+.. ..|+++-|+|+..-..... ... ...++... + ++++||.|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A--D---~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA--D---VIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC--c---EEEEecccCCC
Confidence 45667788775544333333322 3578999999886543222 222 23333222 2 78899999998
Q ss_pred ccccHHHHHHHHHcC--CcEEEEcc
Q 030686 132 RQVKAKQVTFHRKKN--LQYYEISA 154 (173)
Q Consensus 132 ~~~~~~~~~~~~~~~--~~~~~~S~ 154 (173)
...........+..+ ..++.++.
T Consensus 160 ~~~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 160 AEELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEccc
Confidence 764344444555443 55666665
No 420
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.78 E-value=2.5e-05 Score=49.37 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+|.|++||||||+++.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999664
No 421
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.78 E-value=0.00017 Score=44.66 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=58.9
Q ss_pred EEEEc-CCCCCHHHHHHHHhhCCcccc-cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 16 LVIVG-DGGTGKTTFVKRHLTGEFEKK-YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 16 i~v~G-~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
|+++| ..|+||||+...+.. .+... ...+.-.+.+.. ....+.++|+|+... ......+..+|.++++.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~-~~~~~~~~~~~l~d~d~~------~~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv 72 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAV-ALAKEAGRRVLLVDLDLQ------FGDDYVVVDLGRSLD--EVSLAALDQADRVFLVT 72 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHH-HHHhcCCCcEEEEECCCC------CCCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEe
Confidence 44555 578999998776432 22111 122222222111 111789999998643 33445678899999998
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-C-CCCEEEEEeC
Q 030686 94 DVTARLTYKNVPTWHRDLCRVC-E-NIPIVLCGNK 126 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~-~~p~ivv~nK 126 (173)
+.+ ..+...+..+++.+.+.. + ..++.+|+|+
T Consensus 73 ~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 73 QQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred cCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 865 445566666666665542 2 3467777775
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00024 Score=57.94 Aligned_cols=94 Identities=7% Similarity=-0.061 Sum_probs=49.0
Q ss_pred EEEEEEEeCCCcccccC-c---chhh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGG-L---RDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|-..... + .... ....+-.++|+|++... +.+......+.....--+--+|+||.|....-.
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G 340 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DTLNEVVHAYRHGAGEDVDGCIITKLDEATHLG 340 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HHHHHHHHHHhhcccCCCCEEEEeccCCCCCcc
Confidence 45789999999432111 1 1111 12345678899987432 222222333322110012356689999876432
Q ss_pred cHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 135 KAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
. ..++....+.++..++ +|++|
T Consensus 341 ~--iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 341 P--ALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred H--HHHHHHHHCCCeEEEe--cCCCC
Confidence 2 3456666677766653 44555
No 423
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00019 Score=54.69 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=68.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC-cccc---------------------cccceeEEEEEEE-E-----EecCcEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGE-FEKK---------------------YEPTIGVEVHPLD-F-----FTNCGKIRF 64 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~---------------------~~~~~~~~~~~~~-~-----~~~~~~~~~ 64 (173)
..-++++|++|+||||++..|.... .... +....+....... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999998876421 0000 0001111111000 0 001135678
Q ss_pred EEEeCCCcccccC----cchhhcc-----CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030686 65 YCWDTAGQEKFGG----LRDGYYI-----HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 65 ~~~D~~G~~~~~~----~~~~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
.++||+|...... ....++. ...-.++|+|++... +.+......+... + +--+++||.|-...-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~--~-~~glIlTKLDEt~~~G~ 377 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL--N-YRRILLTKLDEADFLGS 377 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC--C-CCEEEEEcccCCCCccH
Confidence 9999999642211 1222222 134678899988653 2222222222211 1 23466899998654332
Q ss_pred HHHHHHHHHcCCcEEEEc
Q 030686 136 AKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S 153 (173)
..+++...+.++..++
T Consensus 378 --il~i~~~~~lPI~ylt 393 (432)
T PRK12724 378 --FLELADTYSKSFTYLS 393 (432)
T ss_pred --HHHHHHHHCCCEEEEe
Confidence 3455666676665553
No 424
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.71 E-value=3.3e-05 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.||+|+|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999996654
No 425
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=3.4e-05 Score=51.80 Aligned_cols=21 Identities=33% Similarity=0.801 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
||+|+|++|||||||...+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998654
No 426
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.70 E-value=0.00024 Score=43.62 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=50.0
Q ss_pred EEEEc-CCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 16 LVIVG-DGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 16 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
|++.| ..|+||||+...+...- .....+..-.+ .+ ..+.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~~d-------~d-~~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLLID-------LD-PQYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEEEe-------CC-CCCCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 56777 47899999987644221 11111222111 11 227899999998643 233467788999999998
Q ss_pred CCChhhhhcHHHHHH
Q 030686 95 VTARLTYKNVPTWHR 109 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~ 109 (173)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555544
No 427
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.70 E-value=6.3e-05 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=21.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.+..-|+|+|++|+|||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34566889999999999999997643
No 428
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.69 E-value=0.00062 Score=53.63 Aligned_cols=83 Identities=8% Similarity=0.114 Sum_probs=46.0
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhc--CCC-CEEEEEeCCCCccccccH-------H-H--HHHHHHcCCcEEEEc
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI-PIVLCGNKVDVKNRQVKA-------K-Q--VTFHRKKNLQYYEIS 153 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~-p~ivv~nK~Dl~~~~~~~-------~-~--~~~~~~~~~~~~~~S 153 (173)
--+|+|=|.-+--..+. ..+...+.++. .+. |+|+|++-+|........ + . .++....++..+..+
T Consensus 133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FN 211 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDT-SRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFN 211 (519)
T ss_pred ceEEEeeccccccchhH-HHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEec
Confidence 45666667654221111 23333333322 355 999999977643211110 1 1 244555678888888
Q ss_pred cCCCCChHHHHHHHHHH
Q 030686 154 AKSNYNFEKPFLYLARK 170 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~ 170 (173)
+....-+...+..|+..
T Consensus 212 pIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 212 PIAPTFMKKALKRILKK 228 (519)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88877777777776653
No 429
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.68 E-value=3.3e-05 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.=|+++|++|||||||+++|+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 44899999999999999997654
No 430
>PRK07261 topology modulation protein; Provisional
Probab=97.68 E-value=4e-05 Score=51.67 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+|+|++|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998653
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.64 E-value=0.0001 Score=57.24 Aligned_cols=91 Identities=9% Similarity=-0.057 Sum_probs=46.3
Q ss_pred EEEEEEEeCCCcccccC---cchhhccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGG---LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~---~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
...+.++||+|-..... .....+.. ..-.++|+|.+... ..+.+....+.. ...--+++||.|......
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~---~~~~g~IlTKlDet~~~G 408 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG---PGLAGCILTKLDEAASLG 408 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc---CCCCEEEEeCCCCcccch
Confidence 34678999999432211 11111211 12367888887432 222222222222 223456689999765332
Q ss_pred cHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 135 KAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.........+.++..++ +|+++
T Consensus 409 --~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 409 --GALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred --HHHHHHHHHCCCeEEEe--cCCCC
Confidence 23566666777766663 45555
No 432
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.63 E-value=4.9e-05 Score=49.41 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030686 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
|+++|++||||||+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999966
No 433
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.63 E-value=6.6e-05 Score=41.47 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
..++.|+.|+|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998653
No 434
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.62 E-value=2.1e-05 Score=58.80 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=52.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc--CcchhhccCCC
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG--GLRDGYYIHGQ 87 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~~~~~~~~~~~ 87 (173)
+.+++-|.++|.||+|||++||.|.. +-.+...|-.|.|-. +.+ -.-...+-++|+||.--.. +.....+ -
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~-KkVCkvAPIpGETKV-WQY--ItLmkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRK-KKVCKVAPIPGETKV-WQY--ITLMKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhh-cccccccCCCCcchH-HHH--HHHHhceeEecCCCccCCCCCchHHHHh---h
Confidence 56789999999999999999999554 444555666664321 211 1123457789999954222 2233333 3
Q ss_pred EEEEEEECCChh
Q 030686 88 CAIIMFDVTARL 99 (173)
Q Consensus 88 ~~i~v~d~~~~~ 99 (173)
+++=|-.+.+++
T Consensus 377 GvVRVenv~~pe 388 (572)
T KOG2423|consen 377 GVVRVENVKNPE 388 (572)
T ss_pred ceeeeeecCCHH
Confidence 556666777765
No 435
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=6e-05 Score=56.64 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=45.5
Q ss_pred EEEEEEEeCCCcccccCc----chhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGGL----RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|....... ...+.. ..+..++|.+++.. ..++...+..+.. --+--+++||.|....-.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~---l~i~glI~TKLDET~~~G 359 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE---IPIDGFIITKMDETTRIG 359 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc---CCCCEEEEEcccCCCCcc
Confidence 468999999996432211 111222 34566677766422 1223222222211 112356689999875432
Q ss_pred cHHHHHHHHHcCCcEEEEc
Q 030686 135 KAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (173)
...+.+...+.++..++
T Consensus 360 --~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 360 --DLYTVMQETNLPVLYMT 376 (407)
T ss_pred --HHHHHHHHHCCCEEEEe
Confidence 23566667777766554
No 436
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.59 E-value=0.00091 Score=49.60 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=44.4
Q ss_pred EEEEEEeCCCcccccCcchhhcc--------CCCEEEEEEECCChhhhh-cHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYI--------HGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
....++++.|......+...++. ..+.++.|+|+.+..... .......++... + ++++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A--D---~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA--D---RILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC--C---EEEEeccccCCH
Confidence 45677888886544443333321 247899999997543221 111122233221 2 677899999864
Q ss_pred cccHHHHHHHHHc--CCcEEEE
Q 030686 133 QVKAKQVTFHRKK--NLQYYEI 152 (173)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~ 152 (173)
. .......+.. .++++.+
T Consensus 166 ~--~~~~~~l~~lnp~a~i~~~ 185 (318)
T PRK11537 166 A--EKLRERLARINARAPVYTV 185 (318)
T ss_pred H--HHHHHHHHHhCCCCEEEEe
Confidence 3 2333333333 3445543
No 437
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.58 E-value=0.00073 Score=45.76 Aligned_cols=85 Identities=9% Similarity=0.083 Sum_probs=58.8
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 139 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 139 (173)
..+.+.++|+|+... ......+..+|.++++...+.. +...+..+++.+.+. +.|+.+|+||+|...+ ...+..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~~-~~~~~~ 164 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF--GIPVGVVINKYDLNDE-IAEEIE 164 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcc-hHHHHH
Confidence 467899999996542 2334567889999999998743 555666666666554 6788899999997543 233445
Q ss_pred HHHHHcCCcEE
Q 030686 140 TFHRKKNLQYY 150 (173)
Q Consensus 140 ~~~~~~~~~~~ 150 (173)
+++...+++++
T Consensus 165 ~~~~~~~~~vl 175 (179)
T cd03110 165 DYCEEEGIPIL 175 (179)
T ss_pred HHHHHcCCCeE
Confidence 66677777654
No 438
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.57 E-value=9.5e-05 Score=47.98 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999996643
No 439
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.56 E-value=5.2e-05 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999997644
No 440
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.55 E-value=0.00088 Score=40.11 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=43.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc-chhhccCCCEEEEEEE
Q 030686 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFD 94 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~~i~v~d 94 (173)
+++.|..|+||||+...+...-.... ....-.+ .+.++|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~~~-------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVLLID-------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEC-------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999988553221111 1111111 7889999976532211 1456667899999998
Q ss_pred CCCh
Q 030686 95 VTAR 98 (173)
Q Consensus 95 ~~~~ 98 (173)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7754
No 441
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.54 E-value=0.0012 Score=44.41 Aligned_cols=84 Identities=6% Similarity=-0.100 Sum_probs=50.5
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHH
Q 030686 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH 142 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 142 (173)
.+.++|+|+.... .....+..+|.++++.+.+.. ++..+..+++.+... ......+++|+.+............+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~~~~~~~~~~~~ 139 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL-GIKVVGVIVNRVRPDMVEGGDMVEDIE 139 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc-CCceEEEEEeCCcccccchhhHHHHHH
Confidence 7899999975432 344557889999999987643 444455555555442 123467889999875433222223344
Q ss_pred HHcCCcEE
Q 030686 143 RKKNLQYY 150 (173)
Q Consensus 143 ~~~~~~~~ 150 (173)
...+.+++
T Consensus 140 ~~~~~~v~ 147 (179)
T cd02036 140 EILGVPLL 147 (179)
T ss_pred HHhCCCEE
Confidence 44555543
No 442
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.53 E-value=0.0015 Score=47.21 Aligned_cols=92 Identities=8% Similarity=0.012 Sum_probs=51.8
Q ss_pred EEEEEEEeCCCcccccC----cchhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGG----LRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~----~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... ....++. ..+-.++|+|++... +++......+... .+--+++||.|......
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~~---~~~~~I~TKlDet~~~G 228 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI---HIDGIVFTKFDETASSG 228 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCCC---CCCEEEEEeecCCCCcc
Confidence 46899999999653221 1112222 346688999987432 2333334444332 22356689999877533
Q ss_pred cHHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 135 KAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
...+++...+.++..++ +|+++.
T Consensus 229 --~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 229 --ELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred --HHHHHHHHHCcCEEEEe--CCCCCC
Confidence 23566666677766553 344444
No 443
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.51 E-value=0.00012 Score=41.65 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|++.|++|+||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999998653
No 444
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.50 E-value=0.0005 Score=46.61 Aligned_cols=22 Identities=50% Similarity=0.443 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
=.++++|+.|+|||||++.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 3689999999999999998554
No 445
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.44 E-value=0.0003 Score=49.30 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=59.6
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh--hhhcHHHHHHHHhh-hcCCCCEEEEEeCCCCccccccHH
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAK 137 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~ 137 (173)
.+.|.+.|+.|... ......+..+|.+|+=.-.+..+ ..-..-+|+.+..+ ..+++|..|+.|+++-........
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~~~~ 160 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLTRAQR 160 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhhHHHH
Confidence 46899999988653 34555677899999955555322 22222234444433 346899999999997442111111
Q ss_pred H-HHHHHHcCCcEEEEccCCCCChHHHHH
Q 030686 138 Q-VTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 138 ~-~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
. .++.. +++++.+...+..-+.+++.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 1 22222 47777777666655555544
No 446
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0022 Score=48.81 Aligned_cols=92 Identities=8% Similarity=-0.060 Sum_probs=49.5
Q ss_pred cEEEEEEEeCCCcccccC----cchhhccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030686 60 GKIRFYCWDTAGQEKFGG----LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~----~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
..+.+.++||+|...... -...++.. ..-.++|.|++... ..+...+..+.. --+--+++||.|....
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~---~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP---FSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC---CCCCEEEEEeccCCCc
Confidence 356889999999643221 11122232 22578899998653 233333333221 1133567899997664
Q ss_pred cccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 133 QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
-.. ..+++...+.++..++ +|+++
T Consensus 328 ~G~--~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 328 VGN--LISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred chH--HHHHHHHHCCCEEEEe--CCCCC
Confidence 332 2455556666655552 44555
No 447
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.44 E-value=0.0038 Score=46.83 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567799999999999998753
No 448
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.44 E-value=0.00075 Score=43.46 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~ 37 (173)
.-.+++.|++|+|||++++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999966443
No 449
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.43 E-value=0.00016 Score=49.68 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+-.+|+|+.||||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46678999999999999998654
No 450
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.42 E-value=7.2e-05 Score=52.20 Aligned_cols=19 Identities=37% Similarity=0.789 Sum_probs=16.1
Q ss_pred eEEEEEcCCCCCHHHHHHH
Q 030686 14 FKLVIVGDGGTGKTTFVKR 32 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~ 32 (173)
+--+|+|+|||||||.++.
T Consensus 3 fgqvVIGPPgSGKsTYc~g 21 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNG 21 (290)
T ss_pred cceEEEcCCCCCccchhhh
Confidence 4568999999999999865
No 451
>PRK06217 hypothetical protein; Validated
Probab=97.41 E-value=0.00015 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+|+|+|.+||||||+..+|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999664
No 452
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.41 E-value=0.016 Score=38.79 Aligned_cols=136 Identities=7% Similarity=0.009 Sum_probs=90.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+...|+++|..+.++..|.++++..... . . +.+... ... -.|.. . ...=...|.++|
T Consensus 14 n~atiLLVg~e~~~~~~LA~a~l~~~~~------~--~---l~Vh~a-~sL-----PLp~e--~----~~lRprIDlIVF 70 (176)
T PF11111_consen 14 NTATILLVGTEEALLQQLAEAMLEEDKE------F--K---LKVHLA-KSL-----PLPSE--N----NNLRPRIDLIVF 70 (176)
T ss_pred ceeEEEEecccHHHHHHHHHHHHhhccc------e--e---EEEEEe-ccC-----CCccc--c----cCCCceeEEEEE
Confidence 4689999999999999999997742111 1 1 111110 011 11111 1 111246899999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc--ccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
++|.....|++..+.-+..+....---.+.++.+-....+ .....+..+++..+.++++.+.-...++...+-+.+.+
T Consensus 71 vinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~ 150 (176)
T PF11111_consen 71 VINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLR 150 (176)
T ss_pred EEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHH
Confidence 9999999999888877777654432334666666666544 34455677999999999999999988888777777666
Q ss_pred H
Q 030686 170 K 170 (173)
Q Consensus 170 ~ 170 (173)
.
T Consensus 151 ~ 151 (176)
T PF11111_consen 151 M 151 (176)
T ss_pred H
Confidence 4
No 453
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.39 E-value=0.00024 Score=48.16 Aligned_cols=21 Identities=48% Similarity=0.695 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+++|++|+|||||++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999665
No 454
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.39 E-value=0.00018 Score=46.48 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5899999999999999985543
No 455
>PRK03839 putative kinase; Provisional
Probab=97.38 E-value=0.00017 Score=48.95 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+++|++|+||||+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998654
No 456
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.38 E-value=0.001 Score=44.90 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=30.0
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
|++++|+|+.++.+... ..+.+.+.-...+.|+++|+||+|+.+...
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCCHHH
Confidence 78999999988643322 122222111113789999999999976443
No 457
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.38 E-value=0.00015 Score=50.67 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
-++|+|++|||||||++- +++-
T Consensus 33 ~vaI~GpSGSGKSTLLni-ig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNL-LGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHH-Hhcc
Confidence 389999999999999997 4443
No 458
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.37 E-value=0.00018 Score=45.75 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999986643
No 459
>PRK08233 hypothetical protein; Provisional
Probab=97.36 E-value=0.00023 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+-|+|.|.+|||||||.++|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46788999999999999999654
No 460
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.36 E-value=0.00025 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+...|+|.|++|||||||++.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998654
No 461
>PRK14530 adenylate kinase; Provisional
Probab=97.36 E-value=0.00021 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
No 462
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.36 E-value=0.00019 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
-|+++|++||||+|+++.|....
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999976553
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.35 E-value=0.00026 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
++..-|+++|++|+|||||++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999998654
No 464
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.32 E-value=0.0002 Score=49.55 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 030686 15 KLVIVGDGGTGKTTFVKRH 33 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l 33 (173)
.++++|++|||||||++.+
T Consensus 30 vv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999874
No 465
>PLN02200 adenylate kinase family protein
Probab=97.32 E-value=0.00037 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+.|+++|+|||||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998653
No 466
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.32 E-value=0.00028 Score=47.64 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCc
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~ 38 (173)
.++|+|++|+|||||+|-+.+-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 689999999999999998665433
No 467
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.31 E-value=6.9e-05 Score=51.04 Aligned_cols=21 Identities=43% Similarity=0.808 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|+++|++|+||+||.++|+.
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999764
No 468
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.31 E-value=0.0012 Score=51.64 Aligned_cols=84 Identities=8% Similarity=0.086 Sum_probs=48.7
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHH--HHHHHHcCCcEEEEccCCCCChHH
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
-.+|+|=|+-+-.-.+....+.+.++.+ .+..|+|++++-+-.......... ..+-...++..+..+.....-+..
T Consensus 195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK 274 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKK 274 (634)
T ss_pred ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHH
Confidence 3457777776543332333333333322 368899999998876542222211 123345567777777777777777
Q ss_pred HHHHHHHH
Q 030686 163 PFLYLARK 170 (173)
Q Consensus 163 ~~~~i~~~ 170 (173)
.+..|++.
T Consensus 275 ~L~ric~~ 282 (634)
T KOG1970|consen 275 FLKRICRI 282 (634)
T ss_pred HHHHHHHH
Confidence 77777664
No 469
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.30 E-value=0.00025 Score=50.15 Aligned_cols=26 Identities=42% Similarity=0.709 Sum_probs=22.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
...++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999887643
No 470
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.29 E-value=0.00026 Score=45.17 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999986543
No 471
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.29 E-value=0.00024 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999986543
No 472
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.00028 Score=45.12 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEF 38 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~ 38 (173)
-.++++|++|+||||++..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999665443
No 473
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00025 Score=50.05 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|++|+|||||++.+.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999998543
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.26 E-value=0.00028 Score=48.18 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|++|+|||||++.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999654
No 475
>PRK01889 GTPase RsgA; Reviewed
Probab=97.26 E-value=0.00042 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
-+++++|.+|+|||||++.+.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47899999999999999997754
No 476
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.26 E-value=0.00073 Score=50.19 Aligned_cols=93 Identities=22% Similarity=0.174 Sum_probs=63.7
Q ss_pred eCCCcc-cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHHHc
Q 030686 68 DTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK 145 (173)
Q Consensus 68 D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~ 145 (173)
+.||+. ++.......+..+|+++-|+|+.++.+... ..+.+...+.|.++|+||+|+.+......-. .+....
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~ 90 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEE 90 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 346653 455566667889999999999999875333 2343444466779999999998866544333 344444
Q ss_pred CCcEEEEccCCCCChHHHHH
Q 030686 146 NLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 146 ~~~~~~~S~~~~~~i~~~~~ 165 (173)
+...+.+++..+.+...+..
T Consensus 91 ~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 91 GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred CCccEEEEeecccCccchHH
Confidence 67778888888887666653
No 477
>PRK13949 shikimate kinase; Provisional
Probab=97.26 E-value=0.0003 Score=47.34 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+++|++|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998553
No 478
>PRK14532 adenylate kinase; Provisional
Probab=97.25 E-value=0.00029 Score=48.10 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+++|+|||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
No 479
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.24 E-value=0.00034 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.|+|+|+.|+|||||+..++..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999997643
No 480
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.24 E-value=0.00028 Score=48.04 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030686 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
.|+++|++||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999866
No 481
>PRK14531 adenylate kinase; Provisional
Probab=97.21 E-value=0.00035 Score=47.60 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+|+++|+|||||||+...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998643
No 482
>PLN02924 thymidylate kinase
Probab=97.21 E-value=0.00063 Score=47.76 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHh
Q 030686 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
|+|+.....+....=|++-|..||||||+++.|.
T Consensus 4 ~~~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~ 37 (220)
T PLN02924 4 MGMETESSVESRGALIVLEGLDRSGKSTQCAKLV 37 (220)
T ss_pred cccCCCCCcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 6777777666666779999999999999999854
No 483
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.21 E-value=0.0014 Score=42.14 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999997754
No 484
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.21 E-value=0.00038 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+++|+|||||||+...+..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999998654
No 485
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.0003 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
....+|+|.|.||+||||+.+++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 345799999999999999999965
No 486
>PRK00625 shikimate kinase; Provisional
Probab=97.19 E-value=0.00039 Score=46.96 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998643
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.18 E-value=0.00038 Score=42.98 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999865
No 488
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.17 E-value=0.00034 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.571 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+|+|++||||||+...|..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
No 489
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.17 E-value=0.00037 Score=48.02 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|++.|++|||||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998654
No 490
>PRK04195 replication factor C large subunit; Provisional
Probab=97.16 E-value=0.0055 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.-.+++.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999996543
No 491
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.16 E-value=0.00044 Score=44.80 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998653
No 492
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00039 Score=46.38 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
.+|+|.|.||+||||+.++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 379999999999999999966
No 493
>PRK06547 hypothetical protein; Provisional
Probab=97.16 E-value=0.00056 Score=46.17 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
......|+|.|++||||||+.+.+...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678899999999999999997643
No 494
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.15 E-value=0.00044 Score=46.83 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
-.++++|+.|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999864
No 495
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.15 E-value=0.00039 Score=47.23 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998654
No 496
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.15 E-value=0.00092 Score=49.19 Aligned_cols=143 Identities=16% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC----Ccc----------c-------ccccceeEEEEEEEE-------------E
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG----EFE----------K-------KYEPTIGVEVHPLDF-------------F 56 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~----~~~----------~-------~~~~~~~~~~~~~~~-------------~ 56 (173)
.+..-|+++|-.|+||||-+-.|... ... . .+....|...-.... .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 44688999999999999988775431 100 0 000011211111100 0
Q ss_pred ecCcEEEEEEEeCCCcccccC-cch------hhccC-----CCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEE
Q 030686 57 TNCGKIRFYCWDTAGQEKFGG-LRD------GYYIH-----GQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLC 123 (173)
Q Consensus 57 ~~~~~~~~~~~D~~G~~~~~~-~~~------~~~~~-----~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv 123 (173)
....++.+.++||+|--..+. +.. ..+.. .+=++++.|++-.. ++..++.+.+.+ ++- -++
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-----~l~-GiI 290 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-----GLD-GII 290 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-----CCc-eEE
Confidence 012467899999999432221 111 11222 34488888999764 333333222222 221 466
Q ss_pred EeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+||+|-..+-.. ....+...+.|+..+- .|++++++
T Consensus 291 lTKlDgtAKGG~--il~I~~~l~~PI~fiG--vGE~~~DL 326 (340)
T COG0552 291 LTKLDGTAKGGI--ILSIAYELGIPIKFIG--VGEGYDDL 326 (340)
T ss_pred EEecccCCCcce--eeeHHHHhCCCEEEEe--CCCChhhc
Confidence 799995443221 2456677788876663 34444443
No 497
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.14 E-value=0.0017 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhhCC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~ 37 (173)
|+++|++|+||||+++.++...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999866543
No 498
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.00091 Score=52.20 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
=||+++|.+|+||||+++.++.
T Consensus 379 ekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998764
No 499
>PLN02772 guanylate kinase
Probab=97.14 E-value=0.00062 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
...-++++|++|+||+||+++|...
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhh
Confidence 3446888999999999999997653
No 500
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.13 E-value=0.00039 Score=48.41 Aligned_cols=21 Identities=43% Similarity=0.639 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
||+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
Done!