Query 030686
Match_columns 173
No_of_seqs 148 out of 1380
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 04:16:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.8E-42 1.3E-46 238.7 18.8 172 1-172 1-175 (216)
2 3kkq_A RAS-related protein M-R 100.0 4.6E-36 1.6E-40 203.2 21.1 171 1-172 6-181 (183)
3 3gj0_A GTP-binding nuclear pro 100.0 1.3E-36 4.4E-41 211.9 17.4 166 7-172 9-174 (221)
4 1z0f_A RAB14, member RAS oncog 100.0 6.8E-36 2.3E-40 201.4 20.0 167 7-173 9-178 (179)
5 3tw8_B RAS-related protein RAB 100.0 1.1E-35 3.9E-40 200.6 20.3 162 11-172 7-170 (181)
6 2a5j_A RAS-related protein RAB 100.0 1.9E-35 6.4E-40 201.7 20.6 165 8-172 16-183 (191)
7 3tkl_A RAS-related protein RAB 100.0 2.9E-35 9.9E-40 201.2 21.4 163 10-172 13-178 (196)
8 1z2a_A RAS-related protein RAB 100.0 1.9E-35 6.6E-40 197.3 20.0 163 11-173 3-167 (168)
9 2hup_A RAS-related protein RAB 100.0 5.7E-36 1.9E-40 206.0 17.9 163 10-172 26-192 (201)
10 3q3j_B RHO-related GTP-binding 100.0 1.1E-35 3.6E-40 206.5 18.7 163 9-172 23-202 (214)
11 1r2q_A RAS-related protein RAB 100.0 1.9E-35 6.3E-40 197.6 19.1 163 10-172 3-168 (170)
12 1z08_A RAS-related protein RAB 100.0 2E-35 6.9E-40 197.6 19.3 163 11-173 4-169 (170)
13 2gf9_A RAS-related protein RAB 100.0 5.5E-35 1.9E-39 199.1 21.7 162 11-172 20-184 (189)
14 1x3s_A RAS-related protein RAB 100.0 3E-35 1E-39 200.9 20.3 163 10-172 12-177 (195)
15 2efe_B Small GTP-binding prote 100.0 3.1E-35 1.1E-39 198.7 19.5 165 8-172 7-174 (181)
16 1ek0_A Protein (GTP-binding pr 100.0 2.5E-35 8.4E-40 197.0 18.6 161 12-172 2-168 (170)
17 3reg_A RHO-like small GTPase; 100.0 4.8E-35 1.6E-39 200.1 20.4 162 10-172 20-187 (194)
18 1wms_A RAB-9, RAB9, RAS-relate 100.0 7.1E-35 2.4E-39 196.2 20.8 164 10-173 4-174 (177)
19 3cpj_B GTP-binding protein YPT 100.0 2.7E-35 9.2E-40 205.6 19.1 172 1-172 1-175 (223)
20 1z0j_A RAB-22, RAS-related pro 100.0 7.3E-35 2.5E-39 194.8 20.4 162 11-172 4-168 (170)
21 2ew1_A RAS-related protein RAB 100.0 4.3E-35 1.5E-39 201.6 19.6 162 11-172 24-188 (201)
22 2hxs_A RAB-26, RAS-related pro 100.0 3E-35 1E-39 198.2 18.4 164 10-173 3-173 (178)
23 3t5g_A GTP-binding protein RHE 100.0 7E-35 2.4E-39 197.1 19.8 161 11-172 4-168 (181)
24 2atx_A Small GTP binding prote 100.0 7.6E-35 2.6E-39 199.1 20.0 162 11-173 16-193 (194)
25 1g16_A RAS-related protein SEC 100.0 5.4E-35 1.8E-39 195.4 18.9 161 12-172 2-164 (170)
26 3c5c_A RAS-like protein 12; GD 100.0 7.5E-35 2.6E-39 198.2 19.8 163 9-173 17-186 (187)
27 1c1y_A RAS-related protein RAP 100.0 1.3E-34 4.4E-39 193.1 20.5 161 12-173 2-167 (167)
28 2g6b_A RAS-related protein RAB 100.0 1.6E-34 5.5E-39 195.0 20.9 165 8-172 5-173 (180)
29 2oil_A CATX-8, RAS-related pro 100.0 1.1E-34 3.9E-39 198.0 20.1 162 11-172 23-187 (193)
30 2fu5_C RAS-related protein RAB 100.0 2.1E-35 7.2E-40 200.0 16.3 162 11-172 6-170 (183)
31 2fg5_A RAB-22B, RAS-related pr 100.0 6.7E-35 2.3E-39 199.2 18.8 162 11-172 21-185 (192)
32 2y8e_A RAB-protein 6, GH09086P 100.0 9.2E-35 3.1E-39 195.8 19.2 164 9-172 10-176 (179)
33 2bme_A RAB4A, RAS-related prot 100.0 1.1E-34 3.7E-39 196.9 19.5 162 11-172 8-172 (186)
34 2p5s_A RAS and EF-hand domain 100.0 4.6E-35 1.6E-39 201.1 17.5 162 11-172 26-196 (199)
35 1m7b_A RND3/RHOE small GTP-bin 100.0 7.2E-35 2.5E-39 197.7 18.3 163 10-173 4-183 (184)
36 1z06_A RAS-related protein RAB 100.0 8.5E-35 2.9E-39 198.1 18.5 164 9-172 16-187 (189)
37 1vg8_A RAS-related protein RAB 100.0 2.1E-34 7.3E-39 198.5 20.5 163 10-172 5-174 (207)
38 1zbd_A Rabphilin-3A; G protein 100.0 1.6E-34 5.3E-39 198.8 19.6 161 12-172 7-170 (203)
39 2q3h_A RAS homolog gene family 100.0 1.5E-34 5.3E-39 198.5 19.5 163 9-172 16-194 (201)
40 2fn4_A P23, RAS-related protei 100.0 2.7E-34 9.1E-39 193.9 20.2 163 9-172 5-171 (181)
41 2bcg_Y Protein YP2, GTP-bindin 100.0 2.7E-34 9.2E-39 198.1 20.6 162 11-172 6-170 (206)
42 2gco_A H9, RHO-related GTP-bin 100.0 2.5E-34 8.6E-39 197.7 20.0 165 8-173 20-200 (201)
43 2il1_A RAB12; G-protein, GDP, 100.0 6E-35 2E-39 199.5 16.7 164 9-172 22-189 (192)
44 3dz8_A RAS-related protein RAB 100.0 3.8E-36 1.3E-40 205.2 10.7 162 11-172 21-185 (191)
45 3ihw_A Centg3; RAS, centaurin, 100.0 2.3E-34 8E-39 195.4 19.4 158 8-172 15-179 (184)
46 2j0v_A RAC-like GTP-binding pr 100.0 1.6E-34 5.3E-39 200.1 18.8 161 11-172 7-179 (212)
47 2o52_A RAS-related protein RAB 100.0 1.3E-34 4.4E-39 199.0 18.2 162 11-172 23-187 (200)
48 1u8z_A RAS-related protein RAL 100.0 2.5E-34 8.6E-39 191.6 18.9 161 11-172 2-166 (168)
49 3cbq_A GTP-binding protein REM 100.0 1.4E-34 5E-39 198.1 17.9 165 8-172 18-187 (195)
50 3bc1_A RAS-related protein RAB 100.0 3.3E-34 1.1E-38 195.4 19.6 163 10-172 8-184 (195)
51 2a9k_A RAS-related protein RAL 100.0 3E-34 1E-38 194.6 19.1 165 7-172 12-180 (187)
52 3q85_A GTP-binding protein REM 100.0 3.4E-34 1.2E-38 191.6 19.1 160 13-172 2-166 (169)
53 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.3E-34 1.1E-38 194.3 19.2 162 11-173 3-180 (186)
54 1gwn_A RHO-related GTP-binding 100.0 1.5E-34 5E-39 199.5 17.5 162 10-172 25-203 (205)
55 3cph_A RAS-related protein SEC 100.0 4.5E-34 1.5E-38 197.7 20.0 162 11-172 18-181 (213)
56 3clv_A RAB5 protein, putative; 100.0 6.2E-34 2.1E-38 195.5 20.6 160 12-172 6-203 (208)
57 2bov_A RAla, RAS-related prote 100.0 5.3E-34 1.8E-38 196.3 20.2 164 8-172 9-176 (206)
58 1ky3_A GTP-binding protein YPT 100.0 2.4E-34 8E-39 194.3 18.1 163 10-172 5-177 (182)
59 3t1o_A Gliding protein MGLA; G 100.0 2.4E-35 8.3E-40 201.6 12.6 162 10-172 11-191 (198)
60 2fv8_A H6, RHO-related GTP-bin 100.0 7.1E-34 2.4E-38 196.2 19.9 161 11-172 23-199 (207)
61 3oes_A GTPase rhebl1; small GT 100.0 2.5E-34 8.7E-39 197.6 17.5 161 11-172 22-186 (201)
62 4dsu_A GTPase KRAS, isoform 2B 100.0 1.5E-33 5.1E-38 191.5 20.7 161 11-172 2-165 (189)
63 3bwd_D RAC-like GTP-binding pr 100.0 7.2E-35 2.4E-39 197.0 13.9 162 11-173 6-181 (182)
64 1kao_A RAP2A; GTP-binding prot 100.0 4.8E-34 1.6E-38 190.1 17.7 160 12-172 2-165 (167)
65 2j1l_A RHO-related GTP-binding 100.0 5.8E-34 2E-38 197.7 18.6 162 10-172 31-208 (214)
66 2ce2_X GTPase HRAS; signaling 100.0 2.4E-33 8.2E-38 186.4 20.8 160 12-172 2-164 (166)
67 2nzj_A GTP-binding protein REM 100.0 7.6E-34 2.6E-38 190.8 18.1 160 12-172 3-168 (175)
68 3con_A GTPase NRAS; structural 100.0 2.8E-33 9.7E-38 190.6 20.5 164 8-172 16-182 (190)
69 4gzl_A RAS-related C3 botulinu 100.0 8.5E-34 2.9E-38 195.5 18.1 162 10-172 27-204 (204)
70 4bas_A ADP-ribosylation factor 100.0 5.3E-34 1.8E-38 195.4 17.0 161 8-172 12-188 (199)
71 3q72_A GTP-binding protein RAD 100.0 1.6E-33 5.6E-38 187.7 18.6 158 13-172 2-163 (166)
72 2iwr_A Centaurin gamma 1; ANK 100.0 1.3E-33 4.6E-38 190.3 18.2 155 11-172 5-168 (178)
73 4djt_A GTP-binding nuclear pro 100.0 9.8E-34 3.4E-38 196.9 17.7 164 9-172 7-174 (218)
74 2f7s_A C25KG, RAS-related prot 100.0 3.2E-34 1.1E-38 199.2 15.2 162 11-172 23-198 (217)
75 2atv_A RERG, RAS-like estrogen 100.0 2.3E-33 7.8E-38 192.1 18.7 160 11-172 26-190 (196)
76 2yc2_C IFT27, small RAB-relate 100.0 1.1E-34 3.7E-39 200.0 11.8 162 11-172 18-191 (208)
77 2erx_A GTP-binding protein DI- 100.0 3.5E-33 1.2E-37 186.8 17.7 159 12-171 2-165 (172)
78 2gf0_A GTP-binding protein DI- 100.0 4.5E-33 1.5E-37 190.7 18.2 161 11-172 6-170 (199)
79 2h57_A ADP-ribosylation factor 100.0 2.4E-33 8.2E-38 191.1 16.6 160 9-172 17-186 (190)
80 3l0i_B RAS-related protein RAB 100.0 1.9E-35 6.4E-40 203.0 5.8 163 10-172 30-195 (199)
81 1ksh_A ARF-like protein 2; sma 100.0 3.8E-33 1.3E-37 189.3 17.1 157 11-172 16-179 (186)
82 2h17_A ADP-ribosylation factor 100.0 9.2E-34 3.2E-38 191.8 13.6 158 8-170 16-180 (181)
83 1zd9_A ADP-ribosylation factor 100.0 2.8E-33 9.7E-38 190.5 16.0 159 10-172 19-184 (188)
84 1zj6_A ADP-ribosylation factor 100.0 3.6E-33 1.2E-37 189.8 16.2 157 11-172 14-177 (187)
85 1f6b_A SAR1; gtpases, N-termin 100.0 2.4E-33 8.2E-38 192.5 15.3 157 10-171 22-197 (198)
86 1m2o_B GTP-binding protein SAR 100.0 6.4E-33 2.2E-37 189.2 16.8 156 10-170 20-189 (190)
87 2g3y_A GTP-binding protein GEM 100.0 1.2E-32 4.2E-37 190.5 18.0 162 10-172 34-202 (211)
88 1upt_A ARL1, ADP-ribosylation 100.0 5.1E-32 1.7E-36 181.2 18.6 156 12-172 6-168 (171)
89 2b6h_A ADP-ribosylation factor 100.0 1.9E-32 6.4E-37 187.1 16.1 158 10-172 26-190 (192)
90 1fzq_A ADP-ribosylation factor 100.0 1.4E-32 5E-37 186.0 15.4 158 10-172 13-177 (181)
91 1r8s_A ADP-ribosylation factor 100.0 1.5E-32 5.2E-37 182.7 14.4 154 14-172 1-161 (164)
92 2cjw_A GTP-binding protein GEM 100.0 2.2E-31 7.4E-36 181.9 19.4 161 11-172 4-171 (192)
93 3llu_A RAS-related GTP-binding 100.0 2.9E-32 9.8E-37 186.7 14.6 163 8-172 15-196 (196)
94 1moz_A ARL1, ADP-ribosylation 100.0 2.2E-32 7.5E-37 185.0 13.9 157 11-172 16-179 (183)
95 2zej_A Dardarin, leucine-rich 100.0 8.5E-33 2.9E-37 187.6 11.1 160 13-172 2-177 (184)
96 2x77_A ADP-ribosylation factor 100.0 7.7E-32 2.6E-36 183.4 14.6 157 11-172 20-183 (189)
97 2wkq_A NPH1-1, RAS-related C3 100.0 8E-31 2.7E-35 192.5 19.6 161 12-173 154-330 (332)
98 3th5_A RAS-related C3 botulinu 100.0 3.6E-34 1.2E-38 197.2 0.0 161 11-172 28-204 (204)
99 2f9l_A RAB11B, member RAS onco 100.0 5.9E-30 2E-34 175.6 20.5 161 12-172 4-167 (199)
100 1oix_A RAS-related protein RAB 100.0 1.5E-29 5.3E-34 172.6 20.9 161 12-172 28-191 (191)
101 3o47_A ADP-ribosylation factor 100.0 2.5E-30 8.7E-35 189.8 16.2 157 11-172 163-326 (329)
102 2wji_A Ferrous iron transport 100.0 4.7E-30 1.6E-34 171.2 14.8 154 12-172 2-164 (165)
103 3c5h_A Glucocorticoid receptor 100.0 4.1E-31 1.4E-35 187.9 10.1 165 8-172 14-254 (255)
104 2fh5_B SR-beta, signal recogni 100.0 9.1E-30 3.1E-34 176.3 15.5 158 11-171 5-214 (214)
105 3lvq_E ARF-GAP with SH3 domain 100.0 3.5E-29 1.2E-33 193.0 17.3 156 11-171 320-482 (497)
106 2lkc_A Translation initiation 100.0 2.7E-29 9.3E-34 169.0 13.8 157 9-171 4-169 (178)
107 3r7w_A Gtpase1, GTP-binding pr 100.0 5.9E-29 2E-33 181.0 16.2 157 12-172 2-180 (307)
108 2qu8_A Putative nucleolar GTP- 100.0 5E-29 1.7E-33 174.4 14.9 163 8-172 24-204 (228)
109 3r7w_B Gtpase2, GTP-binding pr 100.0 4.8E-30 1.7E-34 185.9 8.1 152 15-172 1-173 (331)
110 2wjg_A FEOB, ferrous iron tran 100.0 1.2E-28 4.2E-33 167.3 14.6 156 10-172 4-168 (188)
111 3a1s_A Iron(II) transport prot 100.0 1.7E-28 5.9E-33 174.5 14.1 154 11-171 3-165 (258)
112 1svi_A GTP-binding protein YSX 100.0 2.2E-28 7.4E-33 167.0 13.5 156 11-172 21-194 (195)
113 2dyk_A GTP-binding protein; GT 100.0 2.2E-28 7.6E-33 161.9 12.1 149 14-171 2-160 (161)
114 3dpu_A RAB family protein; roc 100.0 7.7E-29 2.6E-33 192.5 10.7 161 9-172 37-207 (535)
115 3iev_A GTP-binding protein ERA 100.0 7.9E-28 2.7E-32 175.1 15.0 161 8-171 5-180 (308)
116 2gj8_A MNME, tRNA modification 100.0 2E-28 7E-33 164.4 9.1 152 12-171 3-164 (172)
117 3pqc_A Probable GTP-binding pr 100.0 3.2E-27 1.1E-31 161.0 14.6 156 10-172 20-193 (195)
118 2cxx_A Probable GTP-binding pr 100.0 1.8E-28 6.1E-33 166.6 7.8 152 14-172 2-183 (190)
119 3iby_A Ferrous iron transport 100.0 9.3E-28 3.2E-32 170.5 11.4 149 14-169 2-163 (256)
120 3i8s_A Ferrous iron transport 99.9 3.6E-28 1.2E-32 174.3 9.0 153 12-171 2-167 (274)
121 3b1v_A Ferrous iron uptake tra 99.9 9E-28 3.1E-32 171.8 10.6 151 13-171 3-162 (272)
122 4dhe_A Probable GTP-binding pr 99.9 2.8E-27 9.5E-32 164.7 10.7 159 11-172 27-210 (223)
123 3k53_A Ferrous iron transport 99.9 1.9E-26 6.6E-31 165.1 14.6 154 12-171 2-164 (271)
124 1wf3_A GTP-binding protein; GT 99.9 1.6E-26 5.3E-31 167.6 10.8 156 11-171 5-171 (301)
125 3gee_A MNME, tRNA modification 99.9 4.4E-26 1.5E-30 174.0 13.4 157 13-172 233-397 (476)
126 1nrj_B SR-beta, signal recogni 99.9 3.8E-27 1.3E-31 163.6 5.9 140 10-158 9-169 (218)
127 3qq5_A Small GTP-binding prote 99.9 1.3E-26 4.6E-31 174.3 8.2 155 10-171 31-194 (423)
128 2e87_A Hypothetical protein PH 99.9 9.2E-25 3.2E-29 162.0 16.5 157 11-171 165-334 (357)
129 1cip_A Protein (guanine nucleo 99.9 9.6E-25 3.3E-29 160.9 13.4 113 60-172 191-343 (353)
130 3sjy_A Translation initiation 99.9 1.7E-24 5.8E-29 162.9 14.5 161 9-171 4-190 (403)
131 2hjg_A GTP-binding protein ENG 99.9 1.7E-25 5.9E-30 169.8 8.9 157 11-171 173-347 (436)
132 1mky_A Probable GTP-binding pr 99.9 6.5E-25 2.2E-29 166.8 12.0 150 14-171 2-164 (439)
133 1xzp_A Probable tRNA modificat 99.9 2.3E-25 8E-30 170.1 8.6 152 13-171 243-403 (482)
134 3cb4_D GTP-binding protein LEP 99.9 1.9E-24 6.4E-29 168.7 12.9 158 12-172 3-181 (599)
135 3ohm_A Guanine nucleotide-bind 99.9 2.2E-24 7.5E-29 157.0 12.0 113 60-172 165-317 (327)
136 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-24 3.7E-29 160.1 10.3 153 15-172 160-329 (342)
137 2hjg_A GTP-binding protein ENG 99.9 2.3E-25 7.9E-30 169.1 5.9 152 13-171 3-163 (436)
138 4dcu_A GTP-binding protein ENG 99.9 1.8E-24 6.1E-29 165.1 10.4 157 11-171 193-367 (456)
139 1ega_A Protein (GTP-binding pr 99.9 6.4E-24 2.2E-28 154.1 12.6 156 11-171 6-173 (301)
140 2ywe_A GTP-binding protein LEP 99.9 6.5E-24 2.2E-28 165.4 12.2 158 12-172 5-183 (600)
141 2xtp_A GTPase IMAP family memb 99.9 5.7E-24 1.9E-28 151.4 11.0 162 9-171 18-206 (260)
142 2xtz_A Guanine nucleotide-bind 99.9 4.8E-24 1.7E-28 157.2 10.5 113 60-172 181-344 (354)
143 1s0u_A EIF-2-gamma, translatio 99.9 5.3E-23 1.8E-27 155.0 16.1 160 11-171 6-196 (408)
144 3p26_A Elongation factor 1 alp 99.9 7.4E-24 2.5E-28 162.7 11.4 152 11-162 31-227 (483)
145 3geh_A MNME, tRNA modification 99.9 1.1E-24 3.8E-29 165.7 6.7 150 13-172 224-383 (462)
146 1wb1_A Translation elongation 99.9 1.7E-23 5.9E-28 160.3 13.2 159 8-171 14-187 (482)
147 3izy_P Translation initiation 99.9 2.2E-25 7.7E-30 171.6 2.5 156 12-171 3-166 (537)
148 3lxx_A GTPase IMAP family memb 99.9 1.9E-23 6.4E-28 147.0 11.6 161 9-171 25-212 (239)
149 3tr5_A RF-3, peptide chain rel 99.9 1.2E-23 4.2E-28 162.4 11.5 118 12-132 12-149 (528)
150 1zcb_A G alpha I/13; GTP-bindi 99.9 4.9E-23 1.7E-27 152.3 14.2 113 60-172 199-352 (362)
151 4fid_A G protein alpha subunit 99.9 8.1E-24 2.8E-28 154.6 9.6 113 60-172 159-327 (340)
152 3j2k_7 ERF3, eukaryotic polype 99.9 6.7E-23 2.3E-27 155.5 14.8 155 9-165 13-217 (439)
153 3lxw_A GTPase IMAP family memb 99.9 5E-23 1.7E-27 145.5 12.7 159 11-171 19-206 (247)
154 1kk1_A EIF2gamma; initiation o 99.9 1.8E-22 6.1E-27 152.2 16.1 161 10-171 7-198 (410)
155 1d2e_A Elongation factor TU (E 99.9 1.8E-23 6E-28 157.1 10.4 157 12-171 2-193 (397)
156 2ged_A SR-beta, signal recogni 99.9 2.4E-23 8.3E-28 141.7 9.7 117 11-136 46-175 (193)
157 3t5d_A Septin-7; GTP-binding p 99.9 2E-23 6.8E-28 149.7 9.6 157 12-171 7-202 (274)
158 2c78_A Elongation factor TU-A; 99.9 1.1E-23 3.9E-28 158.5 8.0 159 10-171 8-210 (405)
159 4dcu_A GTP-binding protein ENG 99.9 5.6E-24 1.9E-28 162.4 6.3 155 11-171 21-183 (456)
160 1azs_C GS-alpha; complex (lyas 99.9 1.7E-22 5.9E-27 150.6 13.3 112 61-172 216-384 (402)
161 1jny_A EF-1-alpha, elongation 99.9 9.5E-24 3.3E-28 160.2 6.6 152 11-163 4-203 (435)
162 1mky_A Probable GTP-binding pr 99.9 2.1E-22 7.1E-27 153.1 12.8 154 12-171 179-353 (439)
163 1zun_B Sulfate adenylate trans 99.9 2.2E-22 7.4E-27 152.7 12.2 150 11-163 22-214 (434)
164 1g7s_A Translation initiation 99.9 3.7E-22 1.3E-26 155.9 13.7 155 11-171 3-216 (594)
165 2qtf_A Protein HFLX, GTP-bindi 99.9 7.7E-22 2.6E-26 146.2 14.4 154 13-171 178-352 (364)
166 1zo1_I IF2, translation initia 99.9 1.6E-23 5.4E-28 160.2 4.4 153 12-169 3-163 (501)
167 2elf_A Protein translation elo 99.9 4.8E-22 1.7E-26 147.7 11.9 142 15-171 23-178 (370)
168 2qag_A Septin-2, protein NEDD5 99.9 6.6E-23 2.3E-27 152.0 7.0 156 12-171 36-231 (361)
169 3avx_A Elongation factor TS, e 99.9 4.4E-22 1.5E-26 162.7 11.5 159 10-171 293-484 (1289)
170 1r5b_A Eukaryotic peptide chai 99.9 8.2E-23 2.8E-27 156.2 6.9 154 11-164 41-243 (467)
171 1f60_A Elongation factor EEF1A 99.9 1.2E-22 4.2E-27 154.9 7.6 150 11-162 5-201 (458)
172 3izq_1 HBS1P, elongation facto 99.9 2.9E-22 1E-26 157.2 9.3 153 11-163 165-362 (611)
173 2aka_B Dynamin-1; fusion prote 99.9 6.8E-22 2.3E-26 143.2 8.4 157 11-169 24-249 (299)
174 2h5e_A Peptide chain release f 99.9 3.5E-21 1.2E-25 148.8 11.1 128 1-131 1-148 (529)
175 3mca_A HBS1, elongation factor 99.9 4.4E-22 1.5E-26 155.7 5.5 157 11-169 175-393 (592)
176 1pui_A ENGB, probable GTP-bind 99.8 7.4E-21 2.5E-25 131.0 10.5 154 12-171 25-197 (210)
177 1dar_A EF-G, elongation factor 99.8 2E-20 7E-25 148.7 13.4 127 1-131 1-143 (691)
178 2dy1_A Elongation factor G; tr 99.8 2E-20 7E-25 148.2 12.8 116 12-130 8-139 (665)
179 3def_A T7I23.11 protein; chlor 99.8 6.9E-20 2.3E-24 130.5 12.0 119 11-131 34-165 (262)
180 1udx_A The GTP-binding protein 99.8 1.5E-19 5.2E-24 135.7 13.6 154 15-172 159-324 (416)
181 2qnr_A Septin-2, protein NEDD5 99.8 1.9E-20 6.5E-25 135.7 7.5 158 11-172 16-213 (301)
182 1u0l_A Probable GTPase ENGC; p 99.8 8.5E-21 2.9E-25 137.6 5.2 134 28-169 32-169 (301)
183 1h65_A Chloroplast outer envel 99.8 1.2E-19 4E-24 129.9 10.5 119 11-131 37-168 (270)
184 2xex_A Elongation factor G; GT 99.8 4.1E-19 1.4E-23 141.3 14.0 118 11-131 8-141 (693)
185 2j69_A Bacterial dynamin-like 99.8 3.4E-19 1.2E-23 141.8 13.5 107 63-171 175-323 (695)
186 2rdo_7 EF-G, elongation factor 99.8 1.1E-18 3.8E-23 139.0 15.7 118 11-131 8-148 (704)
187 1jwy_B Dynamin A GTPase domain 99.8 4.7E-19 1.6E-23 129.2 11.4 106 62-171 131-260 (315)
188 1wxq_A GTP-binding protein; st 99.8 1.5E-19 5.3E-24 135.3 7.6 85 14-98 1-114 (397)
189 2qag_C Septin-7; cell cycle, c 99.8 7.9E-19 2.7E-23 131.9 10.2 158 11-171 29-225 (418)
190 3t34_A Dynamin-related protein 99.8 3.8E-19 1.3E-23 132.0 5.2 152 13-166 34-254 (360)
191 3vqt_A RF-3, peptide chain rel 99.8 1.2E-17 4.1E-22 129.6 12.8 117 12-131 30-166 (548)
192 2x2e_A Dynamin-1; nitration, h 99.8 3.6E-19 1.2E-23 131.8 4.0 155 11-169 29-254 (353)
193 3p32_A Probable GTPase RV1496/ 99.8 3.4E-18 1.2E-22 126.6 9.1 101 61-171 171-282 (355)
194 2wsm_A Hydrogenase expression/ 99.7 6E-18 2E-22 117.4 8.0 150 13-172 30-213 (221)
195 1n0u_A EF-2, elongation factor 99.7 1.1E-17 3.9E-22 135.5 9.9 118 11-131 17-164 (842)
196 1jal_A YCHF protein; nucleotid 99.7 6.7E-16 2.3E-20 113.8 14.8 82 14-97 3-108 (363)
197 2www_A Methylmalonic aciduria 99.7 3.3E-17 1.1E-21 121.0 7.3 102 60-171 165-277 (349)
198 2qpt_A EH domain-containing pr 99.7 3E-17 1E-21 127.5 7.1 119 12-133 64-234 (550)
199 2hf9_A Probable hydrogenase ni 99.7 1.4E-18 4.8E-23 121.0 -0.5 150 12-171 37-222 (226)
200 2p67_A LAO/AO transport system 99.6 2.2E-16 7.6E-21 116.3 6.9 101 61-171 148-259 (341)
201 3j25_A Tetracycline resistance 99.6 4E-17 1.4E-21 129.0 2.7 115 14-131 3-133 (638)
202 1yrb_A ATP(GTP)binding protein 99.6 1.4E-15 4.8E-20 108.0 9.3 110 61-171 108-255 (262)
203 4fn5_A EF-G 1, elongation fact 99.6 8.7E-15 3E-19 117.0 14.6 117 12-131 12-151 (709)
204 2dby_A GTP-binding protein; GD 99.6 9.4E-15 3.2E-19 108.2 12.5 80 14-97 2-111 (368)
205 3zvr_A Dynamin-1; hydrolase, D 99.6 5.9E-15 2E-19 117.6 9.8 155 11-169 49-274 (772)
206 4a9a_A Ribosome-interacting GT 99.6 3.6E-14 1.2E-18 105.2 11.4 116 13-130 72-195 (376)
207 2yv5_A YJEQ protein; hydrolase 99.6 1.9E-14 6.4E-19 104.3 9.5 96 72-169 66-165 (302)
208 3l82_B F-box only protein 4; T 99.5 7.2E-15 2.5E-19 99.6 6.3 102 69-171 109-221 (227)
209 3l2o_B F-box only protein 4; s 99.5 1.3E-13 4.5E-18 97.7 7.1 103 69-172 194-307 (312)
210 2qm8_A GTPase/ATPase; G protei 99.5 5.5E-14 1.9E-18 103.3 5.1 101 60-170 146-258 (337)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 7E-13 2.4E-17 98.7 5.9 88 12-99 21-130 (396)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.1E-10 3.8E-15 87.1 14.9 85 13-97 20-127 (392)
213 3ec1_A YQEH GTPase; atnos1, at 99.2 1E-12 3.5E-17 97.7 -0.4 141 14-160 163-318 (369)
214 3h2y_A GTPase family protein; 99.2 1.8E-11 6.3E-16 90.9 6.4 95 71-170 55-157 (368)
215 3h2y_A GTPase family protein; 99.2 5.9E-13 2E-17 98.9 -2.1 135 14-154 161-311 (368)
216 1puj_A YLQF, conserved hypothe 99.1 1.7E-10 5.9E-15 82.7 7.7 101 66-171 3-104 (282)
217 3ec1_A YQEH GTPase; atnos1, at 99.1 6.5E-11 2.2E-15 88.0 5.0 95 71-170 57-159 (369)
218 2qag_B Septin-6, protein NEDD5 99.1 5E-10 1.7E-14 84.2 7.8 137 13-154 42-217 (427)
219 2j37_W Signal recognition part 99.0 2.8E-10 9.5E-15 87.4 6.6 150 12-169 100-309 (504)
220 3sop_A Neuronal-specific septi 99.0 1E-09 3.5E-14 78.2 8.3 115 13-131 2-154 (270)
221 1tq4_A IIGP1, interferon-induc 99.0 1.8E-08 6.2E-13 75.7 13.1 153 13-171 69-251 (413)
222 1puj_A YLQF, conserved hypothe 98.8 8.5E-09 2.9E-13 73.9 5.6 60 11-74 118-177 (282)
223 3cnl_A YLQF, putative uncharac 98.7 5.4E-09 1.9E-13 74.1 3.1 58 14-75 100-157 (262)
224 3cnl_A YLQF, putative uncharac 98.7 6.9E-09 2.4E-13 73.6 3.5 93 69-169 4-97 (262)
225 3dm5_A SRP54, signal recogniti 98.6 3.1E-07 1.1E-11 69.4 10.3 91 62-161 183-279 (443)
226 1t9h_A YLOQ, probable GTPase E 98.6 4.3E-08 1.5E-12 70.9 4.5 90 75-166 76-170 (307)
227 2v3c_C SRP54, signal recogniti 98.6 2.2E-08 7.4E-13 75.8 3.0 85 60-152 179-271 (432)
228 1f5n_A Interferon-induced guan 98.4 3E-07 1E-11 72.0 6.1 65 10-74 35-103 (592)
229 1j8m_F SRP54, signal recogniti 98.4 6.1E-07 2.1E-11 64.7 6.8 93 60-162 179-280 (297)
230 3kl4_A SRP54, signal recogniti 98.4 9.2E-07 3.2E-11 66.8 7.0 92 61-161 179-278 (433)
231 2rcn_A Probable GTPase ENGC; Y 98.4 2.3E-06 7.9E-11 63.1 8.8 83 82-167 127-213 (358)
232 1bif_A 6-phosphofructo-2-kinas 98.3 2.8E-08 9.5E-13 76.1 -2.7 114 11-128 37-160 (469)
233 3szr_A Interferon-induced GTP- 98.1 6.9E-06 2.4E-10 64.8 7.9 22 15-36 47-68 (608)
234 3e70_C DPA, signal recognition 98.1 2.6E-05 8.8E-10 57.0 9.3 91 62-161 212-308 (328)
235 2xxa_A Signal recognition part 97.8 0.00012 4E-09 55.5 9.4 83 61-151 183-272 (433)
236 4dzz_A Plasmid partitioning pr 97.8 7.1E-06 2.4E-10 55.6 2.5 84 61-149 75-161 (206)
237 1ex7_A Guanylate kinase; subst 97.8 3.4E-06 1.2E-10 56.6 0.9 21 16-36 4-24 (186)
238 3q5d_A Atlastin-1; G protein, 97.8 3.2E-05 1.1E-09 58.7 5.8 25 11-35 65-89 (447)
239 3cwq_A Para family chromosome 97.7 6.5E-05 2.2E-09 51.2 5.4 85 60-149 66-152 (209)
240 1ye8_A Protein THEP1, hypothet 97.6 3.3E-05 1.1E-09 51.4 3.4 22 14-35 1-22 (178)
241 3ney_A 55 kDa erythrocyte memb 97.6 2.2E-05 7.4E-10 53.2 1.7 25 12-36 18-42 (197)
242 1lvg_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 51.4 3.1 22 14-35 5-26 (198)
243 1kgd_A CASK, peripheral plasma 97.5 6.6E-05 2.3E-09 49.9 3.7 22 14-35 6-27 (180)
244 2ffh_A Protein (FFH); SRP54, s 97.5 7.8E-05 2.7E-09 56.3 4.3 86 60-153 179-271 (425)
245 2rcn_A Probable GTPase ENGC; Y 97.5 9.2E-05 3.1E-09 54.6 4.5 23 15-37 217-239 (358)
246 1t9h_A YLOQ, probable GTPase E 97.5 2.3E-05 7.8E-10 56.7 1.0 23 14-36 174-196 (307)
247 1zp6_A Hypothetical protein AT 97.5 7.2E-05 2.5E-09 50.0 3.1 23 14-36 10-32 (191)
248 3a00_A Guanylate kinase, GMP k 97.4 7.6E-05 2.6E-09 49.9 3.0 20 16-35 4-23 (186)
249 3tr0_A Guanylate kinase, GMP k 97.4 7.8E-05 2.7E-09 50.4 3.1 22 15-36 9-30 (205)
250 2yv5_A YJEQ protein; hydrolase 97.4 0.00031 1.1E-08 50.7 6.1 21 14-34 166-186 (302)
251 4gp7_A Metallophosphoesterase; 97.4 7.7E-05 2.6E-09 49.2 2.7 20 15-34 11-30 (171)
252 3c8u_A Fructokinase; YP_612366 97.4 0.00012 4.2E-09 49.8 3.6 25 11-35 20-44 (208)
253 1s96_A Guanylate kinase, GMP k 97.4 0.0001 3.5E-09 50.7 3.1 23 14-36 17-39 (219)
254 1z6g_A Guanylate kinase; struc 97.4 0.0001 3.6E-09 50.6 3.1 21 15-35 25-45 (218)
255 1znw_A Guanylate kinase, GMP k 97.4 0.00011 3.7E-09 50.0 3.1 21 15-35 22-42 (207)
256 2cdn_A Adenylate kinase; phosp 97.4 0.00017 5.7E-09 48.7 3.9 26 10-35 17-42 (201)
257 1ukz_A Uridylate kinase; trans 97.3 0.00021 7.1E-09 48.2 4.3 23 12-34 14-36 (203)
258 3t61_A Gluconokinase; PSI-biol 97.3 0.00011 3.9E-09 49.6 2.9 22 14-35 19-40 (202)
259 2qor_A Guanylate kinase; phosp 97.3 0.00013 4.5E-09 49.4 3.1 22 14-35 13-34 (204)
260 3tau_A Guanylate kinase, GMP k 97.3 0.00019 6.4E-09 48.9 3.8 23 14-36 9-31 (208)
261 1kag_A SKI, shikimate kinase I 97.3 0.00014 4.9E-09 47.7 3.1 22 14-35 5-26 (173)
262 3kb2_A SPBC2 prophage-derived 97.3 0.00017 5.7E-09 47.2 3.3 21 15-35 3-23 (173)
263 3lw7_A Adenylate kinase relate 97.3 0.00017 5.7E-09 47.2 3.2 20 14-33 2-21 (179)
264 2bbw_A Adenylate kinase 4, AK4 97.3 0.00018 6.1E-09 50.2 3.5 22 13-34 27-48 (246)
265 1ly1_A Polynucleotide kinase; 97.3 0.00019 6.6E-09 47.3 3.5 22 14-35 3-24 (181)
266 3fb4_A Adenylate kinase; psych 97.3 0.00017 5.8E-09 49.2 3.3 22 14-35 1-22 (216)
267 1kht_A Adenylate kinase; phosp 97.3 0.00018 6.2E-09 47.9 3.4 22 14-35 4-25 (192)
268 2yvu_A Probable adenylyl-sulfa 97.3 0.00027 9.3E-09 47.0 4.2 27 9-35 9-35 (186)
269 1knq_A Gluconate kinase; ALFA/ 97.3 0.00027 9.2E-09 46.5 4.1 23 13-35 8-30 (175)
270 3dl0_A Adenylate kinase; phosp 97.3 0.00018 6.2E-09 49.0 3.3 22 14-35 1-22 (216)
271 3asz_A Uridine kinase; cytidin 97.3 0.0002 6.9E-09 48.6 3.5 23 13-35 6-28 (211)
272 2j41_A Guanylate kinase; GMP, 97.3 0.00021 7.3E-09 48.2 3.6 24 14-37 7-30 (207)
273 2bdt_A BH3686; alpha-beta prot 97.3 0.00017 5.9E-09 48.1 3.1 21 15-35 4-24 (189)
274 3tif_A Uncharacterized ABC tra 97.3 0.00016 5.6E-09 50.2 3.0 21 15-35 33-53 (235)
275 4eun_A Thermoresistant glucoki 97.2 0.00019 6.4E-09 48.5 3.1 22 14-35 30-51 (200)
276 1tev_A UMP-CMP kinase; ploop, 97.2 0.00023 7.9E-09 47.5 3.5 23 13-35 3-25 (196)
277 1htw_A HI0065; nucleotide-bind 97.2 0.0002 6.8E-09 46.7 3.1 23 15-37 35-57 (158)
278 3cm0_A Adenylate kinase; ATP-b 97.2 0.00027 9.2E-09 46.9 3.7 22 13-34 4-25 (186)
279 1qhx_A CPT, protein (chloramph 97.2 0.00027 9.1E-09 46.6 3.7 22 14-35 4-25 (178)
280 1uf9_A TT1252 protein; P-loop, 97.2 0.00027 9.2E-09 47.6 3.7 27 10-36 5-31 (203)
281 2plr_A DTMP kinase, probable t 97.2 0.00029 9.8E-09 47.7 3.8 23 13-35 4-26 (213)
282 2pcj_A ABC transporter, lipopr 97.2 0.0002 6.9E-09 49.4 3.0 21 15-35 32-52 (224)
283 3sr0_A Adenylate kinase; phosp 97.2 0.00025 8.7E-09 48.3 3.3 22 14-35 1-22 (206)
284 1y63_A LMAJ004144AAA protein; 97.2 0.00033 1.1E-08 46.6 3.8 24 13-36 10-33 (184)
285 2if2_A Dephospho-COA kinase; a 97.2 0.00025 8.7E-09 47.8 3.3 22 14-35 2-23 (204)
286 3vaa_A Shikimate kinase, SK; s 97.2 0.00026 9E-09 47.7 3.3 22 14-35 26-47 (199)
287 3tlx_A Adenylate kinase 2; str 97.2 0.00031 1.1E-08 49.0 3.7 24 12-35 28-51 (243)
288 2rhm_A Putative kinase; P-loop 97.2 0.0003 1E-08 46.9 3.6 23 13-35 5-27 (193)
289 2onk_A Molybdate/tungstate ABC 97.2 0.00025 8.6E-09 49.5 3.2 21 15-35 26-46 (240)
290 2jaq_A Deoxyguanosine kinase; 97.2 0.00028 9.5E-09 47.5 3.4 21 15-35 2-22 (205)
291 1cke_A CK, MSSA, protein (cyti 97.2 0.00028 9.6E-09 48.4 3.4 22 14-35 6-27 (227)
292 1nks_A Adenylate kinase; therm 97.2 0.00027 9.3E-09 47.0 3.2 21 15-35 3-23 (194)
293 2v9p_A Replication protein E1; 97.1 0.00027 9.3E-09 51.0 3.3 21 14-34 127-147 (305)
294 2i3b_A HCR-ntpase, human cance 97.1 0.00026 8.9E-09 47.5 3.0 21 15-35 3-23 (189)
295 2cbz_A Multidrug resistance-as 97.1 0.00028 9.6E-09 49.1 3.2 21 15-35 33-53 (237)
296 1sgw_A Putative ABC transporte 97.1 0.00027 9.2E-09 48.4 3.1 21 15-35 37-57 (214)
297 3gfo_A Cobalt import ATP-bindi 97.1 0.00026 8.8E-09 50.4 3.1 21 15-35 36-56 (275)
298 1e4v_A Adenylate kinase; trans 97.1 0.00028 9.7E-09 48.1 3.2 22 14-35 1-22 (214)
299 3trf_A Shikimate kinase, SK; a 97.1 0.00031 1.1E-08 46.6 3.3 22 14-35 6-27 (185)
300 2eyu_A Twitching motility prot 97.1 0.00027 9.1E-09 50.0 3.1 22 14-35 26-47 (261)
301 1b0u_A Histidine permease; ABC 97.1 0.00027 9.2E-09 50.0 3.1 21 15-35 34-54 (262)
302 3end_A Light-independent proto 97.1 0.011 3.8E-07 42.4 11.7 83 61-150 156-241 (307)
303 3uie_A Adenylyl-sulfate kinase 97.1 0.00029 9.8E-09 47.6 3.1 23 13-35 25-47 (200)
304 1mv5_A LMRA, multidrug resista 97.1 0.00031 1.1E-08 49.0 3.3 21 15-35 30-50 (243)
305 1jjv_A Dephospho-COA kinase; P 97.1 0.00035 1.2E-08 47.3 3.5 22 14-35 3-24 (206)
306 4g1u_C Hemin import ATP-bindin 97.1 0.00027 9.3E-09 50.1 3.0 21 15-35 39-59 (266)
307 2ff7_A Alpha-hemolysin translo 97.1 0.00031 1.1E-08 49.2 3.2 21 15-35 37-57 (247)
308 1g6h_A High-affinity branched- 97.1 0.00028 9.7E-09 49.7 3.0 21 15-35 35-55 (257)
309 2pze_A Cystic fibrosis transme 97.1 0.00034 1.2E-08 48.4 3.3 21 15-35 36-56 (229)
310 1aky_A Adenylate kinase; ATP:A 97.1 0.00038 1.3E-08 47.7 3.5 23 13-35 4-26 (220)
311 1np6_A Molybdopterin-guanine d 97.1 0.00034 1.2E-08 46.3 3.1 23 14-36 7-29 (174)
312 2olj_A Amino acid ABC transpor 97.1 0.00031 1.1E-08 49.6 3.1 21 15-35 52-72 (263)
313 3aez_A Pantothenate kinase; tr 97.1 0.00063 2.2E-08 49.3 4.7 25 11-35 88-112 (312)
314 1ji0_A ABC transporter; ATP bi 97.1 0.00032 1.1E-08 48.9 3.0 21 15-35 34-54 (240)
315 1vpl_A ABC transporter, ATP-bi 97.1 0.00034 1.2E-08 49.3 3.1 21 15-35 43-63 (256)
316 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00035 1.2E-08 49.0 3.1 21 15-35 31-51 (250)
317 3ec2_A DNA replication protein 97.1 0.0003 1E-08 46.6 2.7 22 14-35 39-60 (180)
318 3b85_A Phosphate starvation-in 97.1 0.0003 1E-08 48.0 2.7 22 15-36 24-45 (208)
319 2qi9_C Vitamin B12 import ATP- 97.1 0.00034 1.2E-08 49.1 3.1 21 15-35 28-48 (249)
320 2ehv_A Hypothetical protein PH 97.1 0.00035 1.2E-08 48.5 3.1 20 15-34 32-51 (251)
321 2v54_A DTMP kinase, thymidylat 97.1 0.00047 1.6E-08 46.4 3.7 24 13-36 4-27 (204)
322 2ghi_A Transport protein; mult 97.1 0.00037 1.3E-08 49.2 3.2 21 15-35 48-68 (260)
323 1zd8_A GTP:AMP phosphotransfer 97.1 0.00039 1.3E-08 47.9 3.3 21 14-34 8-28 (227)
324 1via_A Shikimate kinase; struc 97.1 0.00035 1.2E-08 46.0 3.0 21 15-35 6-26 (175)
325 2qt1_A Nicotinamide riboside k 97.0 0.00058 2E-08 46.2 4.1 23 13-35 21-43 (207)
326 2zu0_C Probable ATP-dependent 97.0 0.00038 1.3E-08 49.3 3.2 21 15-35 48-68 (267)
327 3iij_A Coilin-interacting nucl 97.0 0.0005 1.7E-08 45.4 3.6 22 13-34 11-32 (180)
328 2pt5_A Shikimate kinase, SK; a 97.0 0.00045 1.5E-08 45.0 3.3 21 15-35 2-22 (168)
329 2c95_A Adenylate kinase 1; tra 97.0 0.00047 1.6E-08 46.1 3.5 22 13-34 9-30 (196)
330 1gvn_B Zeta; postsegregational 97.0 0.00048 1.6E-08 49.3 3.7 24 12-35 32-55 (287)
331 2vli_A Antibiotic resistance p 97.0 0.00028 9.6E-09 46.7 2.3 22 13-34 5-26 (183)
332 2ihy_A ABC transporter, ATP-bi 97.0 0.00042 1.4E-08 49.5 3.3 21 15-35 49-69 (279)
333 2ixe_A Antigen peptide transpo 97.0 0.00041 1.4E-08 49.3 3.2 21 15-35 47-67 (271)
334 4a74_A DNA repair and recombin 97.0 0.00038 1.3E-08 47.7 3.0 21 15-35 27-47 (231)
335 2f1r_A Molybdopterin-guanine d 97.0 0.0002 6.8E-09 47.3 1.4 21 15-35 4-24 (171)
336 2nq2_C Hypothetical ABC transp 97.0 0.0004 1.4E-08 48.8 3.0 21 15-35 33-53 (253)
337 3lnc_A Guanylate kinase, GMP k 97.0 0.00023 7.8E-09 49.2 1.8 20 15-34 29-48 (231)
338 2wwf_A Thymidilate kinase, put 97.0 0.0006 2.1E-08 46.2 3.9 23 13-35 10-32 (212)
339 2jeo_A Uridine-cytidine kinase 97.0 0.00055 1.9E-08 47.7 3.7 23 13-35 25-47 (245)
340 1u0l_A Probable GTPase ENGC; p 97.0 0.00038 1.3E-08 50.2 2.9 23 15-37 171-193 (301)
341 1zak_A Adenylate kinase; ATP:A 97.0 0.00044 1.5E-08 47.4 3.1 22 14-35 6-27 (222)
342 2f6r_A COA synthase, bifunctio 97.0 0.00097 3.3E-08 47.6 5.0 24 11-34 73-96 (281)
343 1nn5_A Similar to deoxythymidy 97.0 0.00053 1.8E-08 46.5 3.5 23 13-35 9-31 (215)
344 2yz2_A Putative ABC transporte 97.0 0.00042 1.4E-08 49.1 3.0 21 15-35 35-55 (266)
345 1odf_A YGR205W, hypothetical 3 97.0 0.00076 2.6E-08 48.4 4.4 24 11-34 29-52 (290)
346 1lw7_A Transcriptional regulat 97.0 0.00039 1.3E-08 51.5 2.9 23 13-35 170-192 (365)
347 2xb4_A Adenylate kinase; ATP-b 97.0 0.00051 1.8E-08 47.2 3.3 21 15-35 2-22 (223)
348 4e22_A Cytidylate kinase; P-lo 97.0 0.00065 2.2E-08 47.6 3.8 22 13-34 27-48 (252)
349 2pjz_A Hypothetical protein ST 97.0 0.00052 1.8E-08 48.5 3.3 22 15-36 32-53 (263)
350 1uj2_A Uridine-cytidine kinase 97.0 0.0006 2.1E-08 47.7 3.6 24 12-35 21-44 (252)
351 4ido_A Atlastin-1; GTPase, GTP 97.0 0.0018 6.2E-08 49.1 6.4 63 12-74 66-152 (457)
352 3be4_A Adenylate kinase; malar 96.9 0.00047 1.6E-08 47.2 2.9 23 13-35 5-27 (217)
353 2ze6_A Isopentenyl transferase 96.9 0.00052 1.8E-08 48.2 3.1 21 15-35 3-23 (253)
354 1ak2_A Adenylate kinase isoenz 96.9 0.00067 2.3E-08 46.9 3.7 24 12-35 15-38 (233)
355 3nh6_A ATP-binding cassette SU 96.9 0.00035 1.2E-08 50.5 2.2 21 15-35 82-102 (306)
356 2pbr_A DTMP kinase, thymidylat 96.9 0.00063 2.2E-08 45.3 3.3 21 15-35 2-22 (195)
357 3tqc_A Pantothenate kinase; bi 96.9 0.001 3.4E-08 48.4 4.5 24 11-34 90-113 (321)
358 3n70_A Transport activator; si 96.9 0.00052 1.8E-08 43.9 2.6 24 13-36 24-47 (145)
359 1qf9_A UMP/CMP kinase, protein 96.9 0.00094 3.2E-08 44.4 3.9 22 14-35 7-28 (194)
360 1rz3_A Hypothetical protein rb 96.9 0.00089 3.1E-08 45.2 3.8 24 12-35 21-44 (201)
361 2bwj_A Adenylate kinase 5; pho 96.9 0.0007 2.4E-08 45.3 3.3 22 14-35 13-34 (199)
362 3jvv_A Twitching mobility prot 96.9 0.0006 2E-08 50.4 3.1 21 15-35 125-145 (356)
363 2p5t_B PEZT; postsegregational 96.9 0.00073 2.5E-08 47.4 3.4 24 12-35 31-54 (253)
364 2z0h_A DTMP kinase, thymidylat 96.9 0.00074 2.5E-08 45.1 3.3 21 15-35 2-22 (197)
365 2x8a_A Nuclear valosin-contain 96.9 0.00064 2.2E-08 48.3 3.1 20 16-35 47-66 (274)
366 2bbs_A Cystic fibrosis transme 96.9 0.00067 2.3E-08 48.7 3.2 21 15-35 66-86 (290)
367 1e6c_A Shikimate kinase; phosp 96.8 0.00075 2.6E-08 44.1 3.1 21 15-35 4-24 (173)
368 1sq5_A Pantothenate kinase; P- 96.8 0.001 3.4E-08 48.1 4.0 24 12-35 79-102 (308)
369 1xjc_A MOBB protein homolog; s 96.8 0.00079 2.7E-08 44.3 3.1 22 14-35 5-26 (169)
370 1gtv_A TMK, thymidylate kinase 96.8 0.00026 8.8E-09 48.1 0.8 21 15-35 2-22 (214)
371 3umf_A Adenylate kinase; rossm 96.8 0.0012 4.1E-08 45.3 4.1 20 16-35 32-51 (217)
372 1jbk_A CLPB protein; beta barr 96.8 0.00084 2.9E-08 44.3 3.3 22 14-35 44-65 (195)
373 3r20_A Cytidylate kinase; stru 96.8 0.00084 2.9E-08 46.6 3.4 24 11-34 7-30 (233)
374 2kjq_A DNAA-related protein; s 96.8 0.00051 1.8E-08 44.2 2.2 22 14-35 37-58 (149)
375 2iyv_A Shikimate kinase, SK; t 96.8 0.00076 2.6E-08 44.7 3.1 21 15-35 4-24 (184)
376 1zuh_A Shikimate kinase; alpha 96.8 0.0009 3.1E-08 43.7 3.3 22 14-35 8-29 (168)
377 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00095 3.2E-08 47.0 3.6 22 14-35 5-26 (260)
378 2pez_A Bifunctional 3'-phospho 96.8 0.001 3.6E-08 43.9 3.7 23 13-35 5-27 (179)
379 1vht_A Dephospho-COA kinase; s 96.8 0.001 3.5E-08 45.4 3.7 23 13-35 4-26 (218)
380 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00073 2.5E-08 49.9 3.0 21 15-35 32-52 (359)
381 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00072 2.5E-08 49.4 3.0 22 15-36 173-194 (330)
382 3tui_C Methionine import ATP-b 96.8 0.00078 2.7E-08 49.8 3.2 21 15-35 56-76 (366)
383 1ixz_A ATP-dependent metallopr 96.8 0.0008 2.7E-08 47.0 3.1 20 16-35 52-71 (254)
384 2gza_A Type IV secretion syste 96.8 0.00072 2.5E-08 50.0 3.0 23 14-36 176-198 (361)
385 2ewv_A Twitching motility prot 96.8 0.00081 2.8E-08 49.9 3.3 22 14-35 137-158 (372)
386 2grj_A Dephospho-COA kinase; T 96.8 0.0012 4.1E-08 44.4 3.8 25 11-35 10-34 (192)
387 1z47_A CYSA, putative ABC-tran 96.8 0.00083 2.8E-08 49.5 3.1 21 15-35 43-63 (355)
388 1rj9_A FTSY, signal recognitio 96.8 0.00083 2.8E-08 48.5 3.1 85 62-153 185-281 (304)
389 1sxj_E Activator 1 40 kDa subu 96.7 0.002 7E-08 47.1 5.1 20 16-35 39-58 (354)
390 2yyz_A Sugar ABC transporter, 96.7 0.0009 3.1E-08 49.4 3.1 21 15-35 31-51 (359)
391 3rlf_A Maltose/maltodextrin im 96.7 0.00093 3.2E-08 49.7 3.2 21 15-35 31-51 (381)
392 2it1_A 362AA long hypothetical 96.7 0.00094 3.2E-08 49.4 3.2 21 15-35 31-51 (362)
393 3b9q_A Chloroplast SRP recepto 96.7 0.00096 3.3E-08 48.1 3.1 22 14-35 101-122 (302)
394 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.001 3.5E-08 45.5 3.1 21 15-35 25-45 (235)
395 3kta_A Chromosome segregation 96.7 0.0011 3.7E-08 43.9 3.0 20 15-34 28-47 (182)
396 1p9r_A General secretion pathw 96.7 0.00095 3.3E-08 50.3 3.1 21 15-35 169-189 (418)
397 1v43_A Sugar-binding transport 96.7 0.001 3.5E-08 49.4 3.2 21 15-35 39-59 (372)
398 1g29_1 MALK, maltose transport 96.7 0.001 3.5E-08 49.4 3.1 21 15-35 31-51 (372)
399 2vp4_A Deoxynucleoside kinase; 96.6 0.0015 5.2E-08 45.0 3.6 23 13-35 20-42 (230)
400 1iy2_A ATP-dependent metallopr 96.6 0.0012 4.1E-08 46.9 3.1 20 16-35 76-95 (278)
401 2oap_1 GSPE-2, type II secreti 96.6 0.0011 3.9E-08 51.2 3.1 21 15-35 262-282 (511)
402 1in4_A RUVB, holliday junction 96.6 0.0012 4.2E-08 48.2 3.1 21 15-35 53-73 (334)
403 3nwj_A ATSK2; P loop, shikimat 96.6 0.0012 4.2E-08 46.3 2.9 22 14-35 49-70 (250)
404 2p65_A Hypothetical protein PF 96.6 0.0011 3.6E-08 43.7 2.5 22 14-35 44-65 (187)
405 3d31_A Sulfate/molybdate ABC t 96.6 0.00086 2.9E-08 49.3 2.1 21 15-35 28-48 (348)
406 1m7g_A Adenylylsulfate kinase; 96.6 0.0019 6.5E-08 43.9 3.7 22 13-34 25-46 (211)
407 4eaq_A DTMP kinase, thymidylat 96.6 0.0022 7.4E-08 44.3 4.1 24 12-35 25-48 (229)
408 1cr0_A DNA primase/helicase; R 96.6 0.0013 4.4E-08 47.1 3.0 22 15-36 37-58 (296)
409 1lv7_A FTSH; alpha/beta domain 96.6 0.0014 4.8E-08 45.9 3.1 22 14-35 46-67 (257)
410 2cvh_A DNA repair and recombin 96.6 0.0014 4.9E-08 44.5 3.1 21 15-35 22-42 (220)
411 3bos_A Putative DNA replicatio 96.6 0.0015 5.3E-08 44.8 3.3 23 13-35 52-74 (242)
412 1ltq_A Polynucleotide kinase; 96.6 0.0014 4.8E-08 46.9 3.1 22 14-35 3-24 (301)
413 3gd7_A Fusion complex of cysti 96.5 0.0014 4.7E-08 49.0 3.0 21 15-35 49-69 (390)
414 1n0w_A DNA repair protein RAD5 96.5 0.0016 5.5E-08 44.9 3.1 22 15-36 26-47 (243)
415 1nij_A Hypothetical protein YJ 96.5 0.0011 3.9E-08 48.1 2.4 22 15-36 6-27 (318)
416 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0014 4.7E-08 50.1 2.9 22 15-36 140-161 (460)
417 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0019 6.4E-08 41.5 3.1 19 16-34 26-44 (149)
418 2og2_A Putative signal recogni 96.5 0.0016 5.5E-08 48.1 3.1 23 13-35 157-179 (359)
419 2w58_A DNAI, primosome compone 96.5 0.002 6.8E-08 43.3 3.3 22 14-35 55-76 (202)
420 3gmt_A Adenylate kinase; ssgci 96.5 0.002 6.9E-08 44.5 3.3 25 11-35 6-30 (230)
421 3uc9_A Increased recombination 96.5 0.0057 2E-07 42.1 5.5 88 12-105 28-122 (233)
422 3zvl_A Bifunctional polynucleo 96.5 0.0031 1.1E-07 47.5 4.5 23 13-35 258-280 (416)
423 1oxx_K GLCV, glucose, ABC tran 96.5 0.00083 2.8E-08 49.5 1.4 21 15-35 33-53 (353)
424 2yhs_A FTSY, cell division pro 96.4 0.0019 6.3E-08 49.7 3.1 91 62-161 376-478 (503)
425 2obl_A ESCN; ATPase, hydrolase 96.4 0.0021 7E-08 47.3 3.3 23 15-37 73-95 (347)
426 1c9k_A COBU, adenosylcobinamid 96.4 0.0022 7.6E-08 42.6 3.0 21 16-36 2-22 (180)
427 1q3t_A Cytidylate kinase; nucl 96.4 0.0027 9.4E-08 43.9 3.6 25 11-35 14-38 (236)
428 3ake_A Cytidylate kinase; CMP 96.4 0.0028 9.7E-08 42.6 3.6 21 15-35 4-24 (208)
429 3syl_A Protein CBBX; photosynt 96.3 0.0033 1.1E-07 45.1 4.0 23 12-34 66-88 (309)
430 1svm_A Large T antigen; AAA+ f 96.3 0.0023 7.8E-08 47.6 3.1 22 14-35 170-191 (377)
431 1njg_A DNA polymerase III subu 96.3 0.0024 8.3E-08 43.6 3.1 21 15-35 47-67 (250)
432 3b60_A Lipid A export ATP-bind 96.3 0.0023 7.8E-08 50.3 3.2 21 15-35 371-391 (582)
433 2chg_A Replication factor C sm 96.3 0.0025 8.6E-08 43.0 3.1 21 15-35 40-60 (226)
434 3b9p_A CG5977-PA, isoform A; A 96.3 0.0024 8.3E-08 45.6 3.0 23 13-35 54-76 (297)
435 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0027 9.2E-08 49.5 3.4 21 15-35 49-69 (538)
436 1nlf_A Regulatory protein REPA 96.3 0.0025 8.5E-08 45.3 3.0 21 15-35 32-52 (279)
437 3t15_A Ribulose bisphosphate c 96.3 0.0037 1.3E-07 44.8 3.9 23 13-35 36-58 (293)
438 1tue_A Replication protein E1; 96.3 0.0025 8.4E-08 43.3 2.8 22 14-35 59-80 (212)
439 3h4m_A Proteasome-activating n 96.3 0.0028 9.6E-08 44.9 3.3 22 14-35 52-73 (285)
440 1a7j_A Phosphoribulokinase; tr 96.3 0.0015 5.2E-08 46.8 1.8 23 13-35 5-27 (290)
441 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0036 1.2E-07 43.7 3.7 22 14-35 40-61 (262)
442 2qmh_A HPR kinase/phosphorylas 96.2 0.0029 1E-07 42.7 3.0 24 14-37 35-58 (205)
443 2h92_A Cytidylate kinase; ross 96.2 0.0029 9.9E-08 43.0 3.1 23 13-35 3-25 (219)
444 3cf0_A Transitional endoplasmi 96.2 0.0028 9.5E-08 45.6 3.0 22 14-35 50-71 (301)
445 3euj_A Chromosome partition pr 96.2 0.0029 9.8E-08 48.6 3.1 21 15-35 31-51 (483)
446 1p5z_B DCK, deoxycytidine kina 96.2 0.0023 7.8E-08 45.0 2.5 23 12-34 23-45 (263)
447 2dpy_A FLII, flagellum-specifi 96.2 0.0031 1.1E-07 47.9 3.3 23 15-37 159-181 (438)
448 3ozx_A RNAse L inhibitor; ATP 96.2 0.0028 9.5E-08 49.4 3.1 21 15-35 27-47 (538)
449 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.003 1E-07 46.8 3.1 19 16-34 26-44 (365)
450 3b5x_A Lipid A export ATP-bind 96.2 0.0036 1.2E-07 49.2 3.7 21 15-35 371-391 (582)
451 2dr3_A UPF0273 protein PH0284; 96.2 0.0031 1.1E-07 43.5 3.0 21 15-35 25-45 (247)
452 4fcw_A Chaperone protein CLPB; 96.2 0.0049 1.7E-07 44.2 4.2 22 14-35 48-69 (311)
453 3foz_A TRNA delta(2)-isopenten 96.2 0.0048 1.7E-07 44.6 3.9 22 14-35 11-32 (316)
454 1d2n_A N-ethylmaleimide-sensit 96.2 0.0052 1.8E-07 43.3 4.1 25 11-35 62-86 (272)
455 2yl4_A ATP-binding cassette SU 96.1 0.0024 8.4E-08 50.3 2.5 21 15-35 372-392 (595)
456 3qf4_B Uncharacterized ABC tra 96.1 0.0026 8.9E-08 50.2 2.7 21 15-35 383-403 (598)
457 3j16_B RLI1P; ribosome recycli 96.1 0.0034 1.2E-07 49.6 3.2 21 15-35 105-125 (608)
458 1l8q_A Chromosomal replication 96.1 0.0035 1.2E-07 45.4 3.0 22 14-35 38-59 (324)
459 3crm_A TRNA delta(2)-isopenten 96.1 0.0052 1.8E-07 44.7 3.8 22 14-35 6-27 (323)
460 2px0_A Flagellar biosynthesis 96.1 0.0038 1.3E-07 44.9 3.0 86 61-153 182-273 (296)
461 4a82_A Cystic fibrosis transme 96.1 0.0023 7.8E-08 50.3 2.0 21 15-35 369-389 (578)
462 3tqf_A HPR(Ser) kinase; transf 96.1 0.005 1.7E-07 40.6 3.3 24 14-37 17-40 (181)
463 3d3q_A TRNA delta(2)-isopenten 96.0 0.004 1.4E-07 45.6 3.1 22 14-35 8-29 (340)
464 3bk7_A ABC transporter ATP-bin 96.0 0.0041 1.4E-07 49.2 3.3 21 15-35 119-139 (607)
465 1ofh_A ATP-dependent HSL prote 96.0 0.0043 1.5E-07 44.3 3.1 22 14-35 51-72 (310)
466 3qf4_A ABC transporter, ATP-bi 96.0 0.003 1E-07 49.7 2.5 21 15-35 371-391 (587)
467 2qby_A CDC6 homolog 1, cell di 96.0 0.004 1.4E-07 45.8 3.0 22 14-35 46-67 (386)
468 1pzn_A RAD51, DNA repair and r 96.0 0.0041 1.4E-07 45.7 3.0 22 15-36 133-154 (349)
469 3co5_A Putative two-component 96.0 0.0023 8E-08 40.7 1.5 21 14-34 28-48 (143)
470 2ocp_A DGK, deoxyguanosine kin 96.0 0.0058 2E-07 42.3 3.5 22 14-35 3-24 (241)
471 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0049 1.7E-07 48.0 3.4 22 15-36 314-335 (538)
472 1vma_A Cell division protein F 96.0 0.0048 1.6E-07 44.6 3.1 87 61-154 186-284 (306)
473 3exa_A TRNA delta(2)-isopenten 96.0 0.0065 2.2E-07 44.0 3.8 23 14-36 4-26 (322)
474 3ozx_A RNAse L inhibitor; ATP 95.9 0.0044 1.5E-07 48.3 3.1 21 15-35 296-316 (538)
475 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.0046 1.6E-07 44.9 3.0 23 13-35 45-67 (322)
476 3ld9_A DTMP kinase, thymidylat 95.9 0.0071 2.4E-07 41.6 3.8 24 11-34 19-42 (223)
477 3bk7_A ABC transporter ATP-bin 95.9 0.0051 1.7E-07 48.6 3.4 22 15-36 384-405 (607)
478 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0076 2.6E-07 44.4 4.1 22 13-34 24-45 (359)
479 3eie_A Vacuolar protein sortin 95.9 0.0075 2.6E-07 43.7 4.1 23 13-35 51-73 (322)
480 3qks_A DNA double-strand break 95.9 0.0054 1.8E-07 41.5 3.1 19 16-34 26-44 (203)
481 4b4t_K 26S protease regulatory 95.9 0.0048 1.6E-07 46.6 3.1 22 14-35 207-228 (428)
482 1fnn_A CDC6P, cell division co 95.9 0.0054 1.8E-07 45.3 3.4 21 15-35 46-66 (389)
483 3a8t_A Adenylate isopentenyltr 95.9 0.0057 1.9E-07 44.7 3.3 21 15-35 42-62 (339)
484 4b4t_M 26S protease regulatory 95.9 0.0065 2.2E-07 46.0 3.7 23 13-35 215-237 (434)
485 1sxj_C Activator 1 40 kDa subu 95.9 0.0051 1.7E-07 44.9 3.0 21 16-36 49-69 (340)
486 3u61_B DNA polymerase accessor 95.9 0.02 6.7E-07 41.4 6.1 19 16-34 51-69 (324)
487 4edh_A DTMP kinase, thymidylat 95.9 0.0073 2.5E-07 41.2 3.6 24 11-34 4-27 (213)
488 3lv8_A DTMP kinase, thymidylat 95.9 0.0065 2.2E-07 42.2 3.4 24 11-34 25-48 (236)
489 1tf7_A KAIC; homohexamer, hexa 95.8 0.0055 1.9E-07 47.5 3.0 19 15-33 41-59 (525)
490 3j16_B RLI1P; ribosome recycli 95.8 0.006 2.1E-07 48.2 3.2 21 16-36 381-401 (608)
491 4b4t_L 26S protease subunit RP 95.7 0.008 2.7E-07 45.6 3.7 23 13-35 215-237 (437)
492 1sxj_D Activator 1 41 kDa subu 95.7 0.0064 2.2E-07 44.3 3.1 20 16-35 61-80 (353)
493 3hws_A ATP-dependent CLP prote 95.7 0.0087 3E-07 44.1 3.8 24 12-35 50-73 (363)
494 2r62_A Cell division protease 95.7 0.0026 8.8E-08 44.7 0.9 21 15-35 46-66 (268)
495 4b4t_J 26S protease regulatory 95.7 0.0067 2.3E-07 45.4 3.1 22 14-35 183-204 (405)
496 3uk6_A RUVB-like 2; hexameric 95.7 0.0071 2.4E-07 44.4 3.2 22 14-35 71-92 (368)
497 3pxg_A Negative regulator of g 95.7 0.0063 2.2E-07 46.5 3.0 22 14-35 202-223 (468)
498 2v1u_A Cell division control p 95.7 0.0056 1.9E-07 45.1 2.6 22 14-35 45-66 (387)
499 3cr8_A Sulfate adenylyltranfer 95.7 0.0051 1.8E-07 48.0 2.4 23 13-35 369-391 (552)
500 2qgz_A Helicase loader, putati 95.7 0.0079 2.7E-07 43.4 3.3 23 13-35 152-174 (308)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.8e-42 Score=238.73 Aligned_cols=172 Identities=28% Similarity=0.517 Sum_probs=138.0
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030686 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|+.......+.+++||+++|.+|+|||||+++|+.+.+...+.+|.|.++.......++..+.+.+|||+|+++|..++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 55555555677889999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCC
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
.|++.++++++|||++++++|+.+..|+..+.... ++.|+++|+||+|+.+. .+ .++..+++.++++.|+++||++|
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg 160 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG 160 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence 99999999999999999999999999999987764 68999999999999763 33 34456899999999999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030686 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.||+++|+.|++.+.
T Consensus 161 ~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 161 YNVKQLFRRVAAALP 175 (216)
T ss_dssp BSHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998764
No 2
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=4.6e-36 Score=203.24 Aligned_cols=171 Identities=33% Similarity=0.535 Sum_probs=143.5
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030686 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|.++..+..+.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ......++..+.+.+||+||++.+...+.
T Consensus 6 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 84 (183)
T 3kkq_A 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMRE 84 (183)
T ss_dssp --------CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHH
T ss_pred cccccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHH
Confidence 33444555667789999999999999999999998888888888887666 55667778889999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccC-
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAK- 155 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~- 155 (173)
.+++.+|++++|||++++++++.+..|+..+... ..+.|+++|+||+|+.+ +.. ..+..+++...+++++++||+
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 164 (183)
T 3kkq_A 85 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKD 164 (183)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSS
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCC
Confidence 9999999999999999999999999999888764 36899999999999976 233 334567888889999999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030686 156 SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i~ 172 (173)
++.|++++|+++.+.+.
T Consensus 165 ~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 165 PPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp SCBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998774
No 3
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=1.3e-36 Score=211.91 Aligned_cols=166 Identities=81% Similarity=1.322 Sum_probs=152.4
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030686 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
+..+...+||+++|.+|+|||||+++++.+.+...+.++.|.+........++..+.+.+|||||++.+...+..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34456789999999999999999999888888888889999999988888888899999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|++++|||++++.++..+..|+..+....++.|+++|+||+|+.++....+...++...++.++++||++|.|+.++|++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999999888899999999999998876666667788888999999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 169 l~~~l~ 174 (221)
T 3gj0_A 169 LARKLI 174 (221)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 4
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=6.8e-36 Score=201.37 Aligned_cols=167 Identities=32% Similarity=0.512 Sum_probs=145.4
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030686 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
+......+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 33445679999999999999999999999888777788888888777777888889999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
|++++|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++++++||++|.|++++
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999887765 68999999999999753 22 33456788888999999999999999999
Q ss_pred HHHHHHHhhC
Q 030686 164 FLYLARKLAG 173 (173)
Q Consensus 164 ~~~i~~~i~~ 173 (173)
|+++.+.+.+
T Consensus 169 ~~~l~~~i~~ 178 (179)
T 1z0f_A 169 FLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 5
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=200.60 Aligned_cols=162 Identities=33% Similarity=0.569 Sum_probs=143.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999988887777888888888778888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|+|+++++++..+..|+..+....++.|+++|+||+|+.+... ..+...++...+++++++||++|.|++++|+++.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT 166 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999988888999999999999976432 2345678888899999999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 167 ~~~~ 170 (181)
T 3tw8_B 167 ELVL 170 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 6
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.9e-35 Score=201.73 Aligned_cols=165 Identities=32% Similarity=0.546 Sum_probs=140.9
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
......+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34456799999999999999999999988887777788887777777777888899999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++++|+|++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...++.++++||+++.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887764 58999999999999763 33 334567888889999999999999999999
Q ss_pred HHHHHHhh
Q 030686 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 176 ~~l~~~i~ 183 (191)
T 2a5j_A 176 INTAKEIY 183 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 7
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=201.24 Aligned_cols=163 Identities=31% Similarity=0.566 Sum_probs=145.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
....+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 34569999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.. .. .+...++...+++++++||+++.|++++|++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999987764 478999999999997643 22 3456788889999999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 173 l~~~i~ 178 (196)
T 3tkl_A 173 MAAEIK 178 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 8
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.9e-35 Score=197.28 Aligned_cols=163 Identities=30% Similarity=0.596 Sum_probs=144.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 35799999999999999999999998888778888887777777777878899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|+|++++++++.+..|+..+....++.|+++|+||+|+.+. .. ..+...++...+++++++||+++.|++++++++.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999999998877789999999999999763 22 3445678888899999999999999999999999
Q ss_pred HHhhC
Q 030686 169 RKLAG 173 (173)
Q Consensus 169 ~~i~~ 173 (173)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T 1z2a_A 163 EKHLQ 167 (168)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 88753
No 9
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=5.7e-36 Score=205.99 Aligned_cols=163 Identities=35% Similarity=0.554 Sum_probs=135.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
....+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 34569999999999999999999998888777788888777777777777889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCC-cEEEEccCCCCChHHHHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~ 165 (173)
++|||++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...++ .++++||+++.|++++|+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988765 68999999999999763 33 3345678888898 999999999999999999
Q ss_pred HHHHHhh
Q 030686 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
+|.+.+.
T Consensus 186 ~l~~~i~ 192 (201)
T 2hup_A 186 RVATELI 192 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 10
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.1e-35 Score=206.49 Aligned_cols=163 Identities=20% Similarity=0.334 Sum_probs=140.3
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.....+||+++|.+|+|||||+++|..+.+...+.++.+.+. ......++..+.+.+||++|++++..++..+++++|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345679999999999999999999999998888888888766 3456667788999999999999999999999999999
Q ss_pred EEEEEECCChhhhhc-HHHHHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcCC-cEEEE
Q 030686 89 AIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEI 152 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~ 152 (173)
+++|||+++++++.. +..|+..+....++.|+++|+||+|+.+. .. ..+..+++...++ +++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 68899999888889999999999999752 23 3345678888999 99999
Q ss_pred ccCCCCC-hHHHHHHHHHHhh
Q 030686 153 SAKSNYN-FEKPFLYLARKLA 172 (173)
Q Consensus 153 S~~~~~~-i~~~~~~i~~~i~ 172 (173)
||++|.| ++++|+++.+.+.
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccHHHHHHHHHHHHh
Confidence 9999998 9999999998775
No 11
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.9e-35 Score=197.60 Aligned_cols=163 Identities=33% Similarity=0.588 Sum_probs=144.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+.+.+||+++|.+|+|||||+++|..+.+...+.++.+.+........++..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34679999999999999999999998888877788888888877888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++|+|++++++++.+..|+..+... .++.|+++|+||+|+.+. .. ..+..+++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999888776 368999999999999753 22 23456788888999999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 163 i~~~~~ 168 (170)
T 1r2q_A 163 IAKKLP 168 (170)
T ss_dssp HHHTSC
T ss_pred HHHHHh
Confidence 998764
No 12
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2e-35 Score=197.62 Aligned_cols=163 Identities=29% Similarity=0.529 Sum_probs=137.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999988887777888888877777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++++++||++|.|++++|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 58999999999999763 22 334567888889999999999999999999999
Q ss_pred HHHhhC
Q 030686 168 ARKLAG 173 (173)
Q Consensus 168 ~~~i~~ 173 (173)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998764
No 13
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=5.5e-35 Score=199.05 Aligned_cols=162 Identities=25% Similarity=0.531 Sum_probs=143.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 34699999999999999999999998887777888888887777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.. . ..+..+++...+++++++||++|.|++++|++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999988764 589999999999997632 3 234567888889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 180 ~~~i~ 184 (189)
T 2gf9_A 180 VDVIC 184 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 14
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3e-35 Score=200.93 Aligned_cols=163 Identities=33% Similarity=0.580 Sum_probs=145.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34579999999999999999999999888888888888888878888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.++... .+..+++...++.++++||+++.|++++|++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999987764 57899999999999765544 3456788888999999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 172 l~~~~~ 177 (195)
T 1x3s_A 172 LVEKII 177 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998775
No 15
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=3.1e-35 Score=198.66 Aligned_cols=165 Identities=33% Similarity=0.536 Sum_probs=143.6
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
..+.+.+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34566799999999999999999999998888777788888887777777888899999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++++|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999999999888764 58999999999999653 22 334567888889999999999999999999
Q ss_pred HHHHHHhh
Q 030686 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 167 ~~l~~~~~ 174 (181)
T 2efe_B 167 YEIARRLP 174 (181)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHH
Confidence 99988654
No 16
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-35 Score=197.01 Aligned_cols=161 Identities=33% Similarity=0.597 Sum_probs=142.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.+||+++|++|+|||||+++++.+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999888887788888888877777788888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc----ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~----~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+. ... .+..+++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998887764 68999999999998653 222 334577788899999999999999999999
Q ss_pred HHHHHhh
Q 030686 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
++.+.+.
T Consensus 162 ~l~~~i~ 168 (170)
T 1ek0_A 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHHh
Confidence 9988764
No 17
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4.8e-35 Score=200.13 Aligned_cols=162 Identities=26% Similarity=0.421 Sum_probs=141.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||++++..+.+...+.++.+.+... ....++..+.+.+||+||++.+...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 3457999999999999999999999998888888888766653 566777889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcc---ccc-cHHHHHHHHHcCCc-EEEEccCCCCChHHH
Q 030686 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQV-KAKQVTFHRKKNLQ-YYEISAKSNYNFEKP 163 (173)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~---~~~-~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~ 163 (173)
++|||+++++++..+ ..|+..+....++.|+++|+||+|+.+ +.. ..+..+++...++. ++++||++|.|++++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEV 178 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHH
Confidence 999999999999997 568888888778999999999999975 222 34456788888888 999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+++.+.+.
T Consensus 179 ~~~l~~~i~ 187 (194)
T 3reg_A 179 FEKSVDCIF 187 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 18
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=7.1e-35 Score=196.24 Aligned_cols=164 Identities=32% Similarity=0.630 Sum_probs=140.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 34579999999999999999999998888877888888888777888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccccccH-HHHHHHH-HcCCcEEEEccCCCCChHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHR-KKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~-~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.++.... +..+++. ..+++++++||++|.|+.+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999999887654 578999999999997654443 4456666 5678999999999999999
Q ss_pred HHHHHHHHhhC
Q 030686 163 PFLYLARKLAG 173 (173)
Q Consensus 163 ~~~~i~~~i~~ 173 (173)
+|+++.+.+++
T Consensus 164 l~~~l~~~~~~ 174 (177)
T 1wms_A 164 AFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 19
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=205.59 Aligned_cols=172 Identities=30% Similarity=0.489 Sum_probs=136.1
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030686 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|+.+.........+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++++..++.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 44444444445679999999999999999999999888877788888777777777788889999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCC
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
.+++.+|++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+. ... .+...++...+++++++||+++
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999999999999987764 58899999999999763 333 3456788888999999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030686 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.|++++|++|.+.+.
T Consensus 161 ~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 161 ENVDKAFEELINTIY 175 (223)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
No 20
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=7.3e-35 Score=194.82 Aligned_cols=162 Identities=28% Similarity=0.520 Sum_probs=144.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.+.........+....+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 35799999999999999999999999888888889998888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++.+++.+..|+..+... .++.|+++|+||+|+.+. .. ..+...++...+++++++||+++.|++++|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 999999999999999999988876 468899999999999763 33 334557788889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 164 ~~~i~ 168 (170)
T 1z0j_A 164 SRRIP 168 (170)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 98765
No 21
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-35 Score=201.61 Aligned_cols=162 Identities=35% Similarity=0.611 Sum_probs=143.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 34699999999999999999999999888888889888888778888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|+++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999987764 57899999999999753 33 334457778889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 184 ~~~i~ 188 (201)
T 2ew1_A 184 ACRLI 188 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 22
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=3e-35 Score=198.25 Aligned_cols=164 Identities=26% Similarity=0.462 Sum_probs=140.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC-cEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
+.+.+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999998887777778887777666776665 57899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc---CCCC-EEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p-~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
+++|+|++++++++.+..|+..+.... .+.| +++|+||+|+.+. .. .++...++...+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999988887653 3566 8999999999763 33 2345578888899999999999999999
Q ss_pred HHHHHHHHhhC
Q 030686 163 PFLYLARKLAG 173 (173)
Q Consensus 163 ~~~~i~~~i~~ 173 (173)
+|++|.+.+.+
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 23
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=7e-35 Score=197.06 Aligned_cols=161 Identities=25% Similarity=0.341 Sum_probs=141.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+.+. ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3579999999999999999999998888888888888776 556677788899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|+.++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998887664 48999999999999653 23 34456788899999999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 163 l~~~~~ 168 (181)
T 3t5g_A 163 IILEAE 168 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 24
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.6e-35 Score=199.05 Aligned_cols=162 Identities=24% Similarity=0.372 Sum_probs=140.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 3569999999999999999999998888777778876554 345566777899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcCC-cEEEEcc
Q 030686 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|||+++++++..+. .|+..+....++.|+++|+||+|+.+. .. ..+..+++...++ +++++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 999999999999987 699999888789999999999999753 22 2344577778887 8999999
Q ss_pred CCCCChHHHHHHHHHHhhC
Q 030686 155 KSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~~ 173 (173)
++|.|++++|+++.+.+++
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=5.4e-35 Score=195.44 Aligned_cols=161 Identities=28% Similarity=0.558 Sum_probs=136.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 36899999999999999999999888877778888877777777777788999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.++.... +..+++...+++++++||++|.|++++|+++.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999888765 589999999999996654443 345788888999999999999999999999998
Q ss_pred Hhh
Q 030686 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 162 ~~~ 164 (170)
T 1g16_A 162 LIQ 164 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 26
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=7.5e-35 Score=198.25 Aligned_cols=163 Identities=21% Similarity=0.335 Sum_probs=136.4
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+.+.+||+++|.+|+|||||+++|+.+.+...+.++.+.+. ......++..+.+.+||++|++.+..+ ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345679999999999999999999999988888888888665 345666778899999999999988875 678999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEcc-CCCCChH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISA-KSNYNFE 161 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~-~~~~~i~ 161 (173)
+++|||++++++++.+..|+..+.... ++.|+++|+||+|+.+. ... .+..+++...+++++++|| ++|.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999999887764 68999999999999753 333 4456788889999999999 8999999
Q ss_pred HHHHHHHHHhhC
Q 030686 162 KPFLYLARKLAG 173 (173)
Q Consensus 162 ~~~~~i~~~i~~ 173 (173)
++|+++.+.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
No 27
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.3e-34 Score=193.06 Aligned_cols=161 Identities=32% Similarity=0.575 Sum_probs=138.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|.+|+|||||++++..+.+...+.++.+.... .....++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 5799999999999999999999998887777888775553 455667778999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHc-CCcEEEEccCCCCChHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|||++++++++.+..|+..+.... ++.|+++|+||+|+.+.. . ..+..+++... +++++++||++|.|+++++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988887753 589999999999997643 2 33445677776 789999999999999999999
Q ss_pred HHHHhhC
Q 030686 167 LARKLAG 173 (173)
Q Consensus 167 i~~~i~~ 173 (173)
+.+.+.+
T Consensus 161 l~~~i~~ 167 (167)
T 1c1y_A 161 LVRQINR 167 (167)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 9998753
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-34 Score=194.97 Aligned_cols=165 Identities=28% Similarity=0.568 Sum_probs=135.1
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
+...+.+||+++|.+|+|||||+++|..+.+. ..+.++.+.+........++..+.+.+||+||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34456799999999999999999999888774 45677877777776777788889999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
|++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.. . ..+...++...+++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888765 589999999999997632 2 23445778888999999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+++.+.+.
T Consensus 165 ~~~l~~~~~ 173 (180)
T 2g6b_A 165 FTAIAKELK 173 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 29
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=198.05 Aligned_cols=162 Identities=30% Similarity=0.527 Sum_probs=143.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+........++..+.+.+||+||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 44699999999999999999999998888777888888888778888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...++.++++||++|.|++++|++|
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 58899999999999763 22 334557788889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 183 ~~~i~ 187 (193)
T 2oil_A 183 LKEIF 187 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 30
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.1e-35 Score=199.98 Aligned_cols=162 Identities=30% Similarity=0.568 Sum_probs=114.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 34699999999999999999999888877777888888877777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+. .. .++..+++...+++++++||++|.|++++|+++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887764 58999999999999763 33 344567888889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 166 ~~~i~ 170 (183)
T 2fu5_C 166 ARDIK 170 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 31
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.7e-35 Score=199.18 Aligned_cols=162 Identities=30% Similarity=0.517 Sum_probs=144.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|+.+.+...+.++.+.+........++..+.+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45799999999999999999999998887778889998888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+ +.. ..+..+++...+++++++||+++.|++++|++|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 9999999999999999999987765 5899999999999975 233 344567888889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 181 ~~~i~ 185 (192)
T 2fg5_A 181 SRQIP 185 (192)
T ss_dssp HHTCC
T ss_pred HHHHH
Confidence 88654
No 32
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=9.2e-35 Score=195.83 Aligned_cols=164 Identities=29% Similarity=0.553 Sum_probs=143.3
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+++++||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999888888888888888877778888888999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.. . ..+...++...+++++++||+++.|++++|+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887764 589999999999997532 2 3344577788899999999999999999999
Q ss_pred HHHHHhh
Q 030686 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
+|.+.+.
T Consensus 170 ~l~~~~~ 176 (179)
T 2y8e_A 170 RVAAALP 176 (179)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9988653
No 33
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.1e-34 Score=196.86 Aligned_cols=162 Identities=32% Similarity=0.583 Sum_probs=143.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999998888878888888887777788888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++++++.+..|+..+.... ++.|+++|+||+|+.+. ... .+..+++...+++++++||++|.|++++|+++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 68999999999999753 332 34567888889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 168 ~~~~~ 172 (186)
T 2bme_A 168 ARKIL 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 34
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=201.07 Aligned_cols=162 Identities=28% Similarity=0.530 Sum_probs=132.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 45699999999999999999999998887777888888887777888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-------ccc-cHHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-------RQV-KAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-------~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+ +.. ..+...++...+++++++||++|.|+.
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 185 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV 185 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence 9999999999999999998887764 5899999999999963 222 233457788889999999999999999
Q ss_pred HHHHHHHHHhh
Q 030686 162 KPFLYLARKLA 172 (173)
Q Consensus 162 ~~~~~i~~~i~ 172 (173)
++|++|.+.+.
T Consensus 186 el~~~l~~~i~ 196 (199)
T 2p5s_A 186 EAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 35
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=7.2e-35 Score=197.74 Aligned_cols=163 Identities=24% Similarity=0.413 Sum_probs=139.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+...+||+++|++|+|||||+++|..+.+...+.++.+.... ..+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 356799999999999999999999998887777888876653 4566677889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccc-------------ccc-HHHHHHHHHcC-CcEEEEc
Q 030686 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~~~S 153 (173)
++|||++++++++.+ ..|+..+....++.|+++|+||+|+.+. ... ++..+++...+ ++++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999998 6798888887789999999999999742 222 33456777776 7999999
Q ss_pred cC-CCCChHHHHHHHHHHhhC
Q 030686 154 AK-SNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 154 ~~-~~~~i~~~~~~i~~~i~~ 173 (173)
|+ ++.|++++|+++.+.+++
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 99 689999999999998763
No 36
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=8.5e-35 Score=198.11 Aligned_cols=164 Identities=30% Similarity=0.559 Sum_probs=140.1
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-CcchhhccCCC
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQ 87 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~ 87 (173)
...+.+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++++. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34567999999999999999999999988887778888888777777778888999999999999988 88999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCC---CCh
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN---YNF 160 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~---~~i 160 (173)
++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||+++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 9999999999999999999999988764 68999999999999763 33 33455788888999999999999 999
Q ss_pred HHHHHHHHHHhh
Q 030686 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
.++|++|++.+.
T Consensus 176 ~~l~~~l~~~i~ 187 (189)
T 1z06_A 176 EAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 37
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.1e-34 Score=198.54 Aligned_cols=163 Identities=34% Similarity=0.652 Sum_probs=142.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
....+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35679999999999999999999999888888888888888887888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccccccH-HHHHHHH-HcCCcEEEEccCCCCChHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHR-KKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~-~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.++.... +...++. ..+++++++||++|.|+++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999998887654 478999999999998654443 3445665 6678999999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|++|.+.+.
T Consensus 165 l~~~l~~~~~ 174 (207)
T 1vg8_A 165 AFQTIARNAL 174 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 38
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-34 Score=198.81 Aligned_cols=161 Identities=27% Similarity=0.548 Sum_probs=143.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 46999999999999999999999888877778888888887778788888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|++|.
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999887765 58999999999999763 23 2345578888899999999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 167 ~~i~ 170 (203)
T 1zbd_A 167 DVIC 170 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 39
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=198.54 Aligned_cols=163 Identities=26% Similarity=0.389 Sum_probs=131.2
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
...+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++++..++..+++++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345679999999999999999999998887777777776544 3455667778899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcCC-cEEEE
Q 030686 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEI 152 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~ 152 (173)
+++|||++++++++.+. .|+..+....++.|+++|+||+|+.+. .. ..+...++...++ +++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 99999999999999997 699999888789999999999999752 22 2344567777777 89999
Q ss_pred ccCCCCChHHHHHHHHHHhh
Q 030686 153 SAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i~ 172 (173)
||++|.|++++|+++.+.+.
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 40
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.7e-34 Score=193.88 Aligned_cols=163 Identities=31% Similarity=0.533 Sum_probs=140.6
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+.+.+||+++|.+|+|||||+++|+.+.+...+.++.+.... .....++..+.+.+||+||++++...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3466899999999999999999999998888777888876655 456667778899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
+++|||+++++++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 999999999999999999988885542 58999999999999763 33 334557778889999999999999999999
Q ss_pred HHHHHHhh
Q 030686 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 164 ~~l~~~~~ 171 (181)
T 2fn4_A 164 EQLVRAVR 171 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 41
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.7e-34 Score=198.11 Aligned_cols=162 Identities=30% Similarity=0.549 Sum_probs=143.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45699999999999999999999999888888888888887777778888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|+++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887764 57999999999999763 333 34557888889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 166 ~~~i~ 170 (206)
T 2bcg_Y 166 ARQIK 170 (206)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 42
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.5e-34 Score=197.69 Aligned_cols=165 Identities=28% Similarity=0.451 Sum_probs=139.4
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
.+....+||+++|.+|+|||||++++..+.+...+.++.+.+.. ..+..++..+.+.+||+||++++...+..+++.+|
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 34456799999999999999999999998887777777766554 33566777889999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcCC-cEEE
Q 030686 88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYE 151 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~ 151 (173)
++++|||++++++++.+ ..|+..+....++.|+++|+||+|+.+.. . ..+..+++...++ ++++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999998 56888888877899999999999997531 2 2234567777777 8999
Q ss_pred EccCCCCChHHHHHHHHHHhhC
Q 030686 152 ISAKSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i~~ 173 (173)
+||++|.|++++|++|.+.+++
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 43
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6e-35 Score=199.48 Aligned_cols=164 Identities=28% Similarity=0.569 Sum_probs=136.0
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.....+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34457999999999999999999998888877778888888887778888888999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHc-CCcEEEEccCCCCChHHHH
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKK-NLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~ 164 (173)
+++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+. ... .+..+++... ++.++++||++|.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999988887765 48999999999999763 333 3345666663 7899999999999999999
Q ss_pred HHHHHHhh
Q 030686 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 182 ~~l~~~i~ 189 (192)
T 2il1_A 182 LKLVDDIL 189 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 44
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-36 Score=205.19 Aligned_cols=162 Identities=27% Similarity=0.535 Sum_probs=144.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 35699999999999999999999988887777888888888788888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|+.++|+++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999998865 68999999999999763 22 334557888889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 181 ~~~i~ 185 (191)
T 3dz8_A 181 VDAIC 185 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.3e-34 Score=195.38 Aligned_cols=158 Identities=22% Similarity=0.419 Sum_probs=133.7
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
..+.+++||+++|.+|+|||||+++++.+.+...+.++.+ .. ...+.+++..+.+.+|||+|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 4456789999999999999999999999988877777743 33 3566778888999999999998876 888999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc---cccc-HHHHHHHHHcC-CcEEEEccCCCCCh
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVK-AKQVTFHRKKN-LQYYEISAKSNYNF 160 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~---~~~~-~~~~~~~~~~~-~~~~~~S~~~~~~i 160 (173)
++++|||++++++++.+..|+..+.... ++.|+++|+||+|+.. +... .+..+++...+ +.++++||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 9999999999999999999999997763 5899999999999942 3333 34557888876 89999999999999
Q ss_pred HHHHHHHHHHhh
Q 030686 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
+++|+++++.+.
T Consensus 168 ~~lf~~l~~~i~ 179 (184)
T 3ihw_A 168 ERVFQDVAQKVV 179 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 46
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-34 Score=200.11 Aligned_cols=161 Identities=27% Similarity=0.455 Sum_probs=138.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++++..++..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999998888777778877554 345566778899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc----------ccHHHHHHHHHcCC-cEEEEccCCCC
Q 030686 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ----------VKAKQVTFHRKKNL-QYYEISAKSNY 158 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (173)
+|||++++++++.+. .|+..+....++.|+++|+||+|+.+.. ...+..+++...++ +++++||++|.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 999999999999987 6999998877899999999999986532 23345577778886 99999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030686 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++|+++.+.+.
T Consensus 166 gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 166 NVKAVFDTAIKVVL 179 (212)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998775
No 47
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=199.03 Aligned_cols=162 Identities=31% Similarity=0.579 Sum_probs=133.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 34699999999999999999999988887777788887777777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...++.++++||++|.|++++|+++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887754 58999999999999753 23 234567888889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 183 ~~~i~ 187 (200)
T 2o52_A 183 ARTIL 187 (200)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 48
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2.5e-34 Score=191.64 Aligned_cols=161 Identities=30% Similarity=0.530 Sum_probs=136.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++.+||+++|.+|+|||||++++..+.+...+.++.+.... .....++..+.+.+||+||++++...+..+++.+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 35799999999999999999999988887777777765543 44566777889999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|+|++++++++.+..|+..+..... +.|+++|+||+|+.+. .. ..+..+++...+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999999887754 8999999999999763 22 33456778888999999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 161 l~~~i~ 166 (168)
T 1u8z_A 161 LMREIR 166 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 49
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=198.11 Aligned_cols=165 Identities=24% Similarity=0.312 Sum_probs=133.2
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-cchhhccCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHG 86 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~ 86 (173)
......+||+++|.+|+|||||+++|..........++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3445679999999999999999999764433323344444455555667788889999999999988764 778889999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
|++++|||+++++++..+..|+..+.... .+.|+++|+||+|+.+. ... .+..+++...++.++++||+++.|+++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 99999999999999999999999887764 48999999999999753 333 345678888899999999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|+++++.+.
T Consensus 178 lf~~l~~~i~ 187 (195)
T 3cbq_A 178 LFEGAVRQIR 187 (195)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998774
No 50
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.3e-34 Score=195.44 Aligned_cols=163 Identities=29% Similarity=0.530 Sum_probs=141.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEE-EEEEEecCc---------EEEEEEEeCCCcccccCcc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLR 79 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~G~~~~~~~~ 79 (173)
....+||+++|.+|+|||||+++|..+.+...+.++.+.+.. ......++. .+.+.+||+||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 345799999999999999999999988887777888887776 445555554 7899999999999999999
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccC
Q 030686 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAK 155 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~ 155 (173)
..+++.+|++++|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++++++||+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999999999999988765 58999999999999763 33 334557888889999999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030686 156 SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i~ 172 (173)
++.|++++|++|.+.+.
T Consensus 168 ~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIM 184 (195)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3e-34 Score=194.58 Aligned_cols=165 Identities=29% Similarity=0.513 Sum_probs=139.4
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030686 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
+...++.+||+++|.+|+|||||+++|+.+.+...+.++.+... ...+..++..+.+.+||+||++++...+..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 34456789999999999999999999998888777777776554 34556677788999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
|++++|||++++++++.+..|+..+..... +.|+++|+||+|+.+. .. ..+..+++...+++++++||+++.|+++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 999999999999999999999999887754 8999999999999763 23 3345678888899999999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|++|.+.+.
T Consensus 171 l~~~l~~~i~ 180 (187)
T 2a9k_A 171 VFFDLMREIR 180 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 52
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3.4e-34 Score=191.57 Aligned_cols=160 Identities=24% Similarity=0.324 Sum_probs=124.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-cchhhccCCCEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAII 91 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~ 91 (173)
.+||+++|++|+|||||++++..........++.+.+.....+..++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999887666555555555666666677788889999999999998876 78888999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|||++++++++.+..|+..+....+ +.|+++|+||+|+.+ +... .+..+++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999887754 899999999999975 3333 34557888899999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 162 ~~~i~ 166 (169)
T 3q85_A 162 VRQIR 166 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 53
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=3.3e-34 Score=194.28 Aligned_cols=162 Identities=27% Similarity=0.474 Sum_probs=138.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++.+||+++|.+|+|||||+++|..+.+...+.++.+... ......++..+.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999998888777777776544 345566778899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcCC-cEEEEcc
Q 030686 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+.+. .. ..+...++...++ +++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 999999999999987 688888887779999999999998653 12 2234567777887 9999999
Q ss_pred CCCCChHHHHHHHHHHhhC
Q 030686 155 KSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~~ 173 (173)
++|.|++++|+++.+.+.+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 54
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-34 Score=199.54 Aligned_cols=162 Identities=24% Similarity=0.415 Sum_probs=138.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
....+||+++|.+|+|||||+++|..+.+...+.++.+.+. ...+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 34579999999999999999999999988877788887665 34566677889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccc-------------ccc-HHHHHHHHHcC-CcEEEEc
Q 030686 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~~~S 153 (173)
++|||++++++++.+ ..|+..+....++.|+++|+||+|+.+. ... ++..+++...+ +.++++|
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 999999999999998 6799998887789999999999999742 222 33457777776 6999999
Q ss_pred cC-CCCChHHHHHHHHHHhh
Q 030686 154 AK-SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~-~~~~i~~~~~~i~~~i~ 172 (173)
|+ ++.|++++|+++.+.++
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHh
Confidence 99 68999999999998875
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-34 Score=197.74 Aligned_cols=162 Identities=28% Similarity=0.549 Sum_probs=141.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999988887777888887777777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+.... +...++...+++++++||+++.|++++|++|.
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999998887765 478999999999996554443 34567788899999999999999999999998
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 178 ~~~~ 181 (213)
T 3cph_A 178 KLIQ 181 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 56
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=6.2e-34 Score=195.55 Aligned_cols=160 Identities=31% Similarity=0.508 Sum_probs=138.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcE------------------------------
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK------------------------------ 61 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 61 (173)
..+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 46999999999999999999999998887788888877776666665544
Q ss_pred -------EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 62 -------IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 62 -------~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+|+..+..
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~~~~ 164 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNKFQV 164 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-CCS
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCcccccC
Confidence 899999999999999999999999999999999999999999999999887765 499999999999544444
Q ss_pred c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 135 K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
. .+..+++...+++++++||+++.|+.++|++|.+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 165 DILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3 4556788889999999999999999999999998764
No 57
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=196.33 Aligned_cols=164 Identities=29% Similarity=0.516 Sum_probs=140.7
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
..+.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3445679999999999999999999998888777778877554 345666777889999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
++++|||+++++++..+..|+..+..... +.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999887753 8999999999999763 23 33456788888999999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|++|.+.+.
T Consensus 168 ~~~l~~~i~ 176 (206)
T 2bov_A 168 FFDLMREIR 176 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.4e-34 Score=194.30 Aligned_cols=163 Identities=27% Similarity=0.556 Sum_probs=126.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
..+.+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..+ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3567999999999999999999999988877778888777777677666 556899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccc--cc-cHHHHHHHH-HcCCcEEEEccCCCCC
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR--QV-KAKQVTFHR-KKNLQYYEISAKSNYN 159 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~--~~-~~~~~~~~~-~~~~~~~~~S~~~~~~ 159 (173)
+++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+... .. ..+..+++. ..+.+++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 999999999999999999998887654 58899999999999543 22 333456666 4678999999999999
Q ss_pred hHHHHHHHHHHhh
Q 030686 160 FEKPFLYLARKLA 172 (173)
Q Consensus 160 i~~~~~~i~~~i~ 172 (173)
++++|+++.+.++
T Consensus 165 i~~l~~~l~~~~~ 177 (182)
T 1ky3_A 165 VDTAFEEIARSAL 177 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 59
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=2.4e-35 Score=201.62 Aligned_cols=162 Identities=20% Similarity=0.178 Sum_probs=135.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCccccc-----------ccceeEEEEEEEE-EecCcEEEEEEEeCCCcccccC
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------EPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
....+||+++|.+|+|||||++. +.+.+...+ .++.+.+...... ..++..+.+.+|||||++++..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 34579999999999999999965 555555443 3455555555444 5567789999999999999999
Q ss_pred cchhhccCCCEEEEEEECC------ChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEE
Q 030686 78 LRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYY 150 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~ 150 (173)
.+..+++++|++++|||++ +.+++..+..|+..+....++.|+++|+||+|+.+.....+..+++...++ +++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVL 169 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEE
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEE
Confidence 9999999999999999999 556777888888887555579999999999999887666677788888898 999
Q ss_pred EEccCCCCChHHHHHHHHHHhh
Q 030686 151 EISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++||++|.|++++|++|.+.+.
T Consensus 170 ~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 170 EAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999998775
No 60
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.1e-34 Score=196.25 Aligned_cols=161 Identities=29% Similarity=0.458 Sum_probs=132.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
+.++||+++|.+|+|||||+++|..+.+...+.++.+.+... ....++..+.+.+||+||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 457899999999999999999999888877777777655543 3566777899999999999999999999999999999
Q ss_pred EEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcCC-cEEEEcc
Q 030686 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|||++++++++.+ ..|+..+....++.|+++|+||+|+.+.. . ..+...++...++ .++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999998 56888888877899999999999997531 2 2234467777777 8999999
Q ss_pred CCCCChHHHHHHHHHHhh
Q 030686 155 KSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~ 172 (173)
++|.|++++|++|.+.++
T Consensus 182 ~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 182 KTKEGVREVFETATRAAL 199 (207)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999999875
No 61
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=197.63 Aligned_cols=161 Identities=23% Similarity=0.345 Sum_probs=136.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999988888788887666 455556667889999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.. .. .+...++...+++++++||++|.|++++|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999887653 578999999999997533 33 3456788889999999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 181 l~~~i~ 186 (201)
T 3oes_A 181 VIQEIA 186 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 62
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.5e-33 Score=191.50 Aligned_cols=161 Identities=27% Similarity=0.524 Sum_probs=137.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|.+|+|||||+++|..+.+...+.++.+ +........++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999998888777777765 444455667788889999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.++.... ....++...+++++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887753 589999999999998755444 4457888889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 161 ~~~~~ 165 (189)
T 4dsu_A 161 VREIR 165 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 63
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=7.2e-35 Score=197.03 Aligned_cols=162 Identities=28% Similarity=0.450 Sum_probs=124.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.... .....++..+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45799999999999999999999988877777777664432 22344556788899999999999999999999999999
Q ss_pred EEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc------------ccHHHHHHHHHcCC-cEEEEccCC
Q 030686 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAKQVTFHRKKNL-QYYEISAKS 156 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~-~~~~~S~~~ 156 (173)
+|+|++++++++.+. .|+..+....++.|+++|+||+|+.+.. ...+..+++...++ +++++||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 999999999999987 6999888877799999999999986532 22344577777886 999999999
Q ss_pred CCChHHHHHHHHHHhhC
Q 030686 157 NYNFEKPFLYLARKLAG 173 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i~~ 173 (173)
|.|++++|+++.+.+++
T Consensus 165 ~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CTTHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998764
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4.8e-34 Score=190.10 Aligned_cols=160 Identities=28% Similarity=0.519 Sum_probs=137.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|++|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 579999999999999999999998888777777776443 4566677788899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999988887654 58999999999998653 33 334457788889999999999999999999999
Q ss_pred HHHhh
Q 030686 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T 1kao_A 161 VRQMN 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98763
No 65
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=5.8e-34 Score=197.72 Aligned_cols=162 Identities=28% Similarity=0.520 Sum_probs=118.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34679999999999999999999998887777777775443 34566777889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-------------cc-HHHHHHHHHcCC-cEEEEc
Q 030686 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKNL-QYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~~-~~~~~~~~~~~~-~~~~~S 153 (173)
++|||++++.+++.+. .|+..+....++.|+++|+||+|+.... .. .+...++...++ +++++|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 9999999999999987 6999988877899999999999997632 22 234577778887 899999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 030686 154 AKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~ 172 (173)
|++|.|++++|+++.+.++
T Consensus 190 A~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998765
No 66
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=2.4e-33 Score=186.42 Aligned_cols=160 Identities=28% Similarity=0.522 Sum_probs=138.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 468999999999999999999998887777677765443 3455667778899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCcccccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+|++++.+++.+..|+..+....+ +.|+++|+||+|+.++... .+..+++...+++++++||+++.|++++++++.
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999999998877653 8999999999999774443 345578888899999999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 67
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=190.77 Aligned_cols=160 Identities=21% Similarity=0.309 Sum_probs=126.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc--ccCcchhhccCCCEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQCA 89 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~~~~~~~~ 89 (173)
+.+||+++|++|+|||||+++|..+.+... .++.+.+.....+..++..+.+.+||+||++. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 479999999999999999999887766543 44566676666777788889999999999987 566778889999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
++|||++++++++.+..|+..+... .++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999999999999998888764 358999999999999763 333 334567778899999999999999999999
Q ss_pred HHHHHhh
Q 030686 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
+|.+.+.
T Consensus 162 ~l~~~~~ 168 (175)
T 2nzj_A 162 GVVRQLR 168 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=2.8e-33 Score=190.60 Aligned_cols=164 Identities=27% Similarity=0.504 Sum_probs=128.6
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
...++.+||+++|.+|+|||||+++|+.+.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 3446789999999999999999999998887776667765444 345566777889999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccccc-HHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.++... .+..+++...+++++++||+++.|+++++
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887765 38999999999999774443 34567888889999999999999999999
Q ss_pred HHHHHHhh
Q 030686 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 175 ~~l~~~~~ 182 (190)
T 3con_A 175 YTLVREIR 182 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 69
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=8.5e-34 Score=195.52 Aligned_cols=162 Identities=26% Similarity=0.458 Sum_probs=135.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||++++..+.+...+.++.+. ........++..+.+.+||+||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 356799999999999999999999988887777777753 3445566777889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcCC-cEEEEc
Q 030686 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S 153 (173)
++|||++++.+++.+. .|+..+....++.|+++|+||+|+.+.. . ..+...++...++ +++++|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 9999999999999997 6998888887899999999999987532 1 2334567777776 599999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 030686 154 AKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~ 172 (173)
|++|.|++++|+++.+.++
T Consensus 186 A~~g~gi~~l~~~l~~~~l 204 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAVL 204 (204)
T ss_dssp TTTCTTHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999998753
No 70
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=5.3e-34 Score=195.37 Aligned_cols=161 Identities=19% Similarity=0.346 Sum_probs=129.3
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
..+....||+++|.+|+|||||+++|..+.+.. .+.+|.+.+..... ...+.+.+|||||++++...+..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFE----KGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEE----ETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEE----eCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 444567999999999999999999999888877 67888886555432 4678999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhc---------CCCCEEEEEeCCCCccccccHHHHH------HHHHcCCcEEE
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYYE 151 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~p~ivv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~~ 151 (173)
|++++|||+++++++..+..|+..+.... ++.|+++|+||+|+.+.....+..+ ++...++.+++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence 99999999999999999988888776542 2899999999999987533222221 12456788999
Q ss_pred EccCCCCChHHHHHHHHHHhh
Q 030686 152 ISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+||++|.|++++|++|.+.+.
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 71
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.6e-33 Score=187.73 Aligned_cols=158 Identities=19% Similarity=0.272 Sum_probs=113.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|+|||||++++...... ...++.+.+. ......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999997755443 3455666555 34566778889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+..|+..+... .++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 9999999999999998888765 368999999999999753 333 334578888899999999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 160 ~~~~ 163 (166)
T 3q72_A 160 RQIR 163 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 72
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.3e-33 Score=190.28 Aligned_cols=155 Identities=21% Similarity=0.386 Sum_probs=128.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|.+|+|||||+++|..+.+.. +.++.+... ...+..++..+.+.+||+||+++ ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 568999999999999999999999888876 677777444 45566777889999999999986 46889999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCcc---cccc-HHHHHHHHHc-CCcEEEEccCCCCChH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN---RQVK-AKQVTFHRKK-NLQYYEISAKSNYNFE 161 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~---~~~~-~~~~~~~~~~-~~~~~~~S~~~~~~i~ 161 (173)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+ +... .+..+++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999998776665542 5889999999999942 3333 3445666665 6899999999999999
Q ss_pred HHHHHHHHHhh
Q 030686 162 KPFLYLARKLA 172 (173)
Q Consensus 162 ~~~~~i~~~i~ 172 (173)
++|+++.+.+.
T Consensus 158 ~lf~~l~~~~~ 168 (178)
T 2iwr_A 158 RVFQEVAQKVV 168 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 73
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=9.8e-34 Score=196.86 Aligned_cols=164 Identities=45% Similarity=0.817 Sum_probs=138.7
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC-cEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
.....+||+++|.+|+|||||+++|+.+.+...+.++.+.+.......... ..+.+.+||+||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 345679999999999999999999988888877788888777776665543 4489999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-cccHH-HHHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++++|+|++++.+++.+..|+..+..... +.|+++|+||+|+.+. ....+ ...++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999887754 5899999999999764 33333 446777889999999999999999999
Q ss_pred HHHHHHhh
Q 030686 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
+++.+.+.
T Consensus 167 ~~l~~~~~ 174 (218)
T 4djt_A 167 LHLARIFT 174 (218)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 74
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.2e-34 Score=199.22 Aligned_cols=162 Identities=33% Similarity=0.542 Sum_probs=139.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCc----------EEEEEEEeCCCcccccCcch
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~G~~~~~~~~~ 80 (173)
...+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+.+++. .+.+.+||+||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 34699999999999999999999988887777788887776666666655 78999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCC
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~ 156 (173)
.+++.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+..+++...+++++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 99999999999999999999999999988876654 58999999999999763 33 3345678888899999999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030686 157 NYNFEKPFLYLARKLA 172 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i~ 172 (173)
+.|++++|++|.+.+.
T Consensus 183 g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIM 198 (217)
T ss_dssp TBTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 75
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-33 Score=192.10 Aligned_cols=160 Identities=28% Similarity=0.414 Sum_probs=137.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4579999999999999999999999888877788877554 34566677889999999999988 778888999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCC-ChHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNY-NFEKPFL 165 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~ 165 (173)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++++++||++|. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 9999999999999999998887753 58999999999999763 33 334557888889999999999999 9999999
Q ss_pred HHHHHhh
Q 030686 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
+|++.+.
T Consensus 184 ~l~~~i~ 190 (196)
T 2atv_A 184 ELCREVR 190 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998774
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.1e-34 Score=200.01 Aligned_cols=162 Identities=24% Similarity=0.402 Sum_probs=104.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--CcccccccceeEEEEEEEEEecCc--EEEEEEEeCCCcccccCcchhhccCC
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
...+||+++|.+|+|||||+++|..+ .+...+.++.+.+.....+..++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35689999999999999999998887 677677788877777677777766 89999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcC----CCCEEEEEeCCCCcc--cccc-HHHHHHHHHcCCcEEEEccCC-CC
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQVK-AKQVTFHRKKNLQYYEISAKS-NY 158 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~~~S~~~-~~ 158 (173)
|++++|||++++.+++.+..|+..+....+ +.|+++|+||+|+.+ +... .+..+++...+++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999987754 899999999999976 3333 455678888899999999999 99
Q ss_pred ChHHHHHHHHHHhh
Q 030686 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|+.++|++|.+.+.
T Consensus 178 gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 178 DADAPFLSIATTFY 191 (208)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-33 Score=186.82 Aligned_cols=159 Identities=25% Similarity=0.430 Sum_probs=134.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.+||+++|.+|+|||||++++..+.+...+.++.+.+.. .....++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4699999999999999999999988877667777765543 344566777899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|+|++++.+++.+..|+..+.+.. ++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999888888777653 58999999999999763 232 3445677788899999999999999999999
Q ss_pred HHHHh
Q 030686 167 LARKL 171 (173)
Q Consensus 167 i~~~i 171 (173)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98764
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-33 Score=190.74 Aligned_cols=161 Identities=26% Similarity=0.426 Sum_probs=137.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+.. .....++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45699999999999999999999988887777777775544 34556777889999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.++.... +...++...+++++++||++|.|++++|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999888877776643 478999999999998755443 445677888999999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 165 l~~~~~ 170 (199)
T 2gf0_A 165 LLTLET 170 (199)
T ss_dssp HHHHCS
T ss_pred HHHHHh
Confidence 988653
No 79
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=191.08 Aligned_cols=160 Identities=21% Similarity=0.334 Sum_probs=127.6
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCC-cccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
...+.+||+++|.+|+|||||+++|..+. +...+.++.+...... .. ..+.+.+||+||++.+...+..+++++|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF--KS--SSLSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEE--EC--SSCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEE--EE--CCEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34567999999999999999999988776 4555677777544333 33 3478999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCC
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNY 158 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~ 158 (173)
++++|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+.....+..+... ..++.++++||++|.
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 9999999999999999988888876643 5899999999999977544444444442 235789999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030686 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++|++|.+.+-
T Consensus 173 gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 173 GLQEGVDWLQDQIQ 186 (190)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988753
No 80
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=202.99 Aligned_cols=163 Identities=31% Similarity=0.561 Sum_probs=134.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
....+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 34569999999999999999999988888777778888788777788888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... ..+...++...+++++++||+++.|++++|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999887764 4789999999999976332 23456788888999999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 190 l~~~l~ 195 (199)
T 3l0i_B 190 MAAEIK 195 (199)
T ss_dssp HTTTTT
T ss_pred HHHHHH
Confidence 987664
No 81
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=3.8e-33 Score=189.35 Aligned_cols=157 Identities=17% Similarity=0.270 Sum_probs=129.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+. ...+.+|.+.+...... ..+.+.+|||||++++...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH----RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE----TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999988777 66677888766544443 4688999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|++++++++.+..|+..+... .++.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence 999999999999998888877654 3689999999999997754333332222 134568999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+++.+.+.
T Consensus 171 ~~~l~~~i~ 179 (186)
T 1ksh_A 171 IDWLLDDIS 179 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 82
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=9.2e-34 Score=191.81 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=125.9
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
....+.+||+++|.+|+|||||+++|..+.+ ..+.++.+.+...... ..+.+.+||+||++++...+..+++++|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEE----TTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEE----CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3445679999999999999999999888877 5567777755543333 3489999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCCh
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i 160 (173)
++++|+|++++++++.+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...++.++++||++|.|+
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 999999999999999998888887654 3689999999999997643333333222 224568999999999999
Q ss_pred HHHHHHHHHH
Q 030686 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
+++|++|.+.
T Consensus 171 ~~l~~~l~~~ 180 (181)
T 2h17_A 171 CQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 83
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=2.8e-33 Score=190.53 Aligned_cols=159 Identities=23% Similarity=0.394 Sum_probs=130.5
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||+++|..+.+...+.++.+.+..... ...+.+.+||+||++++...+..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEE----ETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEE----eCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 345799999999999999999999988887777888887765432 3568899999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|++++++++.+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...++.++++||++|.|+++
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence 9999999999999998888877654 3689999999999997643222222211 12356789999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|++|.+.+.
T Consensus 175 l~~~l~~~~~ 184 (188)
T 1zd9_A 175 TLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 84
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-33 Score=189.78 Aligned_cols=157 Identities=23% Similarity=0.328 Sum_probs=125.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+. .+.+|.+.+...... ..+.+.+||+||++++...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEE----TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999998877776 567777755443333 3489999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|++++++++.+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence 999999999999999988888765 3689999999999997644333333332 234568999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
+++|.+.+.
T Consensus 169 ~~~l~~~~~ 177 (187)
T 1zj6_A 169 LEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998764
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=2.4e-33 Score=192.46 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=120.5
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|++|+|||||++++..+.+. .+.+|.+.+.. .+..++ +.+.+|||||++.++..+..+++.+|++
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 96 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGI 96 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEE
Confidence 356789999999999999999998877654 45677766543 333333 8999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH-----------------cCCcEE
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----------------KNLQYY 150 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~ 150 (173)
++|+|++++++++.+..|+..+.+. ..+.|+++|+||+|+.+....++..+++.. .+++++
T Consensus 97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 97 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 9999999999999999988888654 368999999999999874333444444432 346799
Q ss_pred EEccCCCCChHHHHHHHHHHh
Q 030686 151 EISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~~i 171 (173)
++||++|.|++++|+++.+.+
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 999999999999999998653
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=6.4e-33 Score=189.16 Aligned_cols=156 Identities=18% Similarity=0.272 Sum_probs=124.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|++|+|||||++++..+.+. .+.++.+.+... +..+ ++.+.+|||||++.++..+..+++.+|++
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 94 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEE--LAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNGI 94 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEE--EEET--TEEEEEEECCCSGGGTTSGGGGCTTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEE--EEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 355789999999999999999999887764 456777765433 3333 38999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH------------cCCcEEEEccC
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK------------KNLQYYEISAK 155 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~S~~ 155 (173)
++|+|++++++++.+..|+..+... .++.|+++|+||+|+.+....++..+.+.. .+++++++||+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 95 VFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 9999999999999999988887653 368999999999999874333333343322 35679999999
Q ss_pred CCCChHHHHHHHHHH
Q 030686 156 SNYNFEKPFLYLARK 170 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~ 170 (173)
+|.|++++|+++.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999999864
No 87
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=190.46 Aligned_cols=162 Identities=20% Similarity=0.324 Sum_probs=129.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCC--cccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc-ccCcchhhccCC
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG 86 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~ 86 (173)
....+||+++|.+|+|||||+++|.+.. +... .++.+.+.....+.+++..+.+.+|||+|++. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 3456999999999999999999987533 2333 23455565556677788888999999999876 455677788999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCcc-ccccH-HHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
+++++|||++++++|+.+..|+..+... .+++|+++|+||+|+.+ +.... +...++...+++++++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999998877653 35899999999999975 33333 34467778889999999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|+++++.+.
T Consensus 193 lf~~l~~~i~ 202 (211)
T 2g3y_A 193 LFEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=5.1e-32 Score=181.19 Aligned_cols=156 Identities=21% Similarity=0.351 Sum_probs=127.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.+||+++|.+|+|||||++++..+.+.. +.++.+.+...... ....+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTY----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEE----TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccceEEEEE----CCEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 46999999999999999999998877653 56677755544333 36789999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHH-----HHHcCCcEEEEccCCCCChHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+|+++++++..+..|+..+... .++.|+++|+||+|+.+.....+.... +...+++++++||++|.|++++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHH
Confidence 99999999999888888777654 268999999999999775332222221 22345689999999999999999
Q ss_pred HHHHHHhh
Q 030686 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
+++.+.+.
T Consensus 161 ~~l~~~i~ 168 (171)
T 1upt_A 161 EWLVETLK 168 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998774
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=1.9e-32 Score=187.14 Aligned_cols=158 Identities=22% Similarity=0.318 Sum_probs=121.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+.+.+||+++|++|+|||||++++..+.+.. +.+|.+....... ...+.+.+||+||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE----YKNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEEEEEE----ETTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeEEEEE----ECCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 4567999999999999999999988777653 4566664333222 2558999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHH-----HHHcCCcEEEEccCCCCChHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|++++++++.+..|+..+... .++.|+++|+||+|+.+.....+..+. +...+++++++||++|.|+++
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHH
Confidence 9999999999999998888887653 258999999999999765322222221 112345799999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|++|.+.+.
T Consensus 181 l~~~l~~~i~ 190 (192)
T 2b6h_A 181 GLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 90
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1.4e-32 Score=186.03 Aligned_cols=158 Identities=17% Similarity=0.306 Sum_probs=125.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+.+.+||+++|++|+|||||++++..+.+ ..+.++.|.+...... ..+.+.+||+||++.++..+..+++.+|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~----~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQS----QGFKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEE----TTEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 35679999999999999999999776644 4456777755443333 367899999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHH
Q 030686 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|+++++++..+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|+++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHH
Confidence 9999999999999988888877543 3689999999999997654333222221 12356799999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|+++.+.+.
T Consensus 168 l~~~l~~~~~ 177 (181)
T 1fzq_A 168 GMNWVCKNVN 177 (181)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=1.5e-32 Score=182.69 Aligned_cols=154 Identities=24% Similarity=0.327 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||++++..+.+.. +.||.+..... + ....+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEE--E--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEE--E--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999998777654 46676633322 2 235678999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHH-----HHHcCCcEEEEccCCCCChHHHHHH
Q 030686 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|+++++++..+..|+..+... .++.|+++|+||+|+.+.....+.... +...+++++++||++|.|++++|++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 999999999988888877653 368999999999999764322222221 1123457999999999999999999
Q ss_pred HHHHhh
Q 030686 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 156 l~~~i~ 161 (164)
T 1r8s_A 156 LSNQLR 161 (164)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 998764
No 92
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=2.2e-31 Score=181.89 Aligned_cols=161 Identities=20% Similarity=0.339 Sum_probs=126.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--CcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc-ccCcchhhccCCC
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQ 87 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~ 87 (173)
...+||+++|.+|+|||||+++|.+. .+...+ ++.+.+.....+.+++..+.+.+|||+|.+. ++.++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45799999999999999999998853 233332 3345555556667788888999999999876 5667788899999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCcc-ccccH-HHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
++++|||++++++++.+..|+..+... .++.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999998888877664 25799999999999975 33333 334667778899999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+++++.+.
T Consensus 163 f~~l~~~~~ 171 (192)
T 2cjw_A 163 FEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998763
No 93
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=100.00 E-value=2.9e-32 Score=186.73 Aligned_cols=163 Identities=14% Similarity=0.143 Sum_probs=121.8
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcc---hhhc
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR---DGYY 83 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~---~~~~ 83 (173)
..+.+.+||+++|.+|+|||||++++. +.+..........+......... +..+.+.+||++|+++|.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVF-HKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHH-SCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHH-hcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 334567999999999999999999855 44443322222223333333333 567899999999999987766 8999
Q ss_pred cCCCEEEEEEECCCh--hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--------ccH-HHHHHHH----HcCCc
Q 030686 84 IHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKA-KQVTFHR----KKNLQ 148 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~-~~~~~~~----~~~~~ 148 (173)
+++|++++|||++++ +++..+..|+..+....++.|+++|+||+|+.+.. ... ...+++. ..++.
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 999999999999997 67777778888876667799999999999986521 111 2235565 56789
Q ss_pred EEEEccCCCCChHHHHHHHHHHhh
Q 030686 149 YYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 149 ~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++++||++ .|+.++|+.+++.++
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHHTC
T ss_pred eEEEEech-hhHHHHHHHHHHHhC
Confidence 99999999 999999999998864
No 94
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-32 Score=185.03 Aligned_cols=157 Identities=20% Similarity=0.304 Sum_probs=123.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|++|+|||||++++..+.+ ..+.++.+........ ....+.+||+||++++...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEE----TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999887776 4567777755443333 3488999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|++++++++.+..|+..+... ..+.|+++|+||+|+.+.....+..+... ..+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 999999999999998888888765 36899999999999976543333333222 12457999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
++++.+.+.
T Consensus 171 ~~~l~~~~~ 179 (183)
T 1moz_A 171 LDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=100.00 E-value=8.5e-33 Score=187.59 Aligned_cols=160 Identities=19% Similarity=0.343 Sum_probs=121.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC--CcccccccceeEEEEEEEEEe---cCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
++||+++|++|+|||||++++... .+...+.+|.|.+........ ++..+.+.+||++|++++..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999998864 445556778777766555433 235678999999999999999999999999
Q ss_pred EEEEEEECCCh-hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc-----HHHHHHHHHcCCc----EEEEccCCC
Q 030686 88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-----AKQVTFHRKKNLQ----YYEISAKSN 157 (173)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~----~~~~S~~~~ 157 (173)
++++|||++++ .++..+..|+..+....++.|+++|+||+|+.+.... .....++...+++ ++++||+++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999997 5899999999998877678999999999999764322 1123455556776 999999999
Q ss_pred C-ChHHHHHHHHHHhh
Q 030686 158 Y-NFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~-~i~~~~~~i~~~i~ 172 (173)
. ++.++++.+.+.+.
T Consensus 162 ~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 162 SDALAKLRKTIINESL 177 (184)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHh
Confidence 7 99999999988764
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=7.7e-32 Score=183.42 Aligned_cols=157 Identities=20% Similarity=0.287 Sum_probs=126.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+.. +.+|.+........ ..+.+.+|||||++++...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQY----KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEEE----TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEEE----CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999987776653 56676654443333 4688999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHH-----HHHcCCcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|+++++++..+..|+..+... .++.|+++|+||+|+.+.....+..+. +...+++++++||+++.|++++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 999999999999888888777654 258999999999999765332222221 1233567999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
++++.+.+.
T Consensus 175 ~~~l~~~i~ 183 (189)
T 2x77_A 175 MDWLVERLR 183 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.98 E-value=8e-31 Score=192.49 Aligned_cols=161 Identities=25% Similarity=0.454 Sum_probs=138.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|.+|+|||||++++..+.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999998888777777776544 3455667788899999999999999999999999999999
Q ss_pred EEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcCC-cEEEEccC
Q 030686 92 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISAK 155 (173)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~S~~ 155 (173)
|||++++.++..+. .|+..+....++.|+++|+||+|+.+. .. ..+...++...++ +++++||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 99999999999987 688888887779999999999998642 12 2334567788887 89999999
Q ss_pred CCCChHHHHHHHHHHhhC
Q 030686 156 SNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i~~ 173 (173)
+|.|++++|+++.+.+++
T Consensus 313 ~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 999999999999998764
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.6e-34 Score=197.25 Aligned_cols=161 Identities=27% Similarity=0.476 Sum_probs=133.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ......++..+.+.+||+||++++...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999988887766666665433 334455667788999999999999999999999999999
Q ss_pred EEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcCC-cEEEEcc
Q 030686 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|+|++++.+++.+. .|+..+....++.|+++|+||+|+.+.. . ..+...++...++ +++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 999999999999987 7888887776789999999999997532 1 2233456666776 8999999
Q ss_pred CCCCChHHHHHHHHHHhh
Q 030686 155 KSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~ 172 (173)
++|.|++++|+++.+.++
T Consensus 187 ~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAVL 204 (204)
Confidence 999999999999988764
No 99
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=5.9e-30 Score=175.57 Aligned_cols=161 Identities=34% Similarity=0.587 Sum_probs=137.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.++..+..+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46899999999999999999999888877778888877777778888888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.. . ..+...++...++.++++|++++.|+.++++++.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888888776653 478999999999997632 2 2345678888899999999999999999999998
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 164 ~~~~ 167 (199)
T 2f9l_A 164 TEIY 167 (199)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.5e-29 Score=172.55 Aligned_cols=161 Identities=32% Similarity=0.568 Sum_probs=140.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..++|+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|.+++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 45899999999999999999999888887888899888887788888888899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+|.++..+++.+..|+..+.... .+.|+++++||+|+.+. .. ......++...++.++++|++++.|+.++|+++.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888888776643 47899999999999763 22 3345678888899999999999999999999999
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 188 ~~i~ 191 (191)
T 1oix_A 188 TEIY 191 (191)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8763
No 101
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=189.78 Aligned_cols=157 Identities=23% Similarity=0.312 Sum_probs=120.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+... .+|.+....... ...+.+.+|||||++.+..++..+++.+|+++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEE----ETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEe----cCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999887776543 356555544332 35689999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|||++++.++..+..|+..+.... +++|+++|+||+|+.+.....+...... ..+++++++||++|.|++++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence 9999999999999888776665432 5899999999999987543333332221 23457999999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|++|.+.+.
T Consensus 318 ~~~l~~~l~ 326 (329)
T 3o47_A 318 LDWLSNQLR 326 (329)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999875
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.97 E-value=4.7e-30 Score=171.23 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=113.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------cchhhcc-
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI- 84 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~- 84 (173)
++++|+++|++|+|||||++++.+..+.....++.+.+.....+..+ ...+.+|||||++++.. +...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 46899999999999999999988766543333332222222233333 36899999999988753 3355665
Q ss_pred -CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 85 -HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 85 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
+++++++|+|+++.+. ...|+..+.+. +.|+++|+||+|+... ....+..+++...+++++++||++|.|+++
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE 154 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHhc--CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 8999999999998653 34466666553 8999999999998653 233345677778889999999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|+++.+.+-
T Consensus 155 l~~~l~~~~~ 164 (165)
T 2wji_A 155 LKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.1e-31 Score=187.87 Aligned_cols=165 Identities=21% Similarity=0.256 Sum_probs=122.6
Q ss_pred CCCCCeeEEEEEcCC---------CCCHHHHHHHHhh---CCcccccccce-eEEEEEEE--------------EEecCc
Q 030686 8 TVDYPSFKLVIVGDG---------GTGKTTFVKRHLT---GEFEKKYEPTI-GVEVHPLD--------------FFTNCG 60 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~ 60 (173)
......+||+++|.+ |+|||||+++|.. +.+...+.++. +.++.... ...++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 344567999999999 9999999999987 44544444443 22221111 113456
Q ss_pred EEEEEEEe-----------------------CCCcccccCcchhhcc---------------------CCCEEEEEEECC
Q 030686 61 KIRFYCWD-----------------------TAGQEKFGGLRDGYYI---------------------HGQCAIIMFDVT 96 (173)
Q Consensus 61 ~~~~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~ 96 (173)
.+.+.+|| ++|++++..++..+++ ++|++++|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 6778888888888887 799999999999
Q ss_pred Ch--hhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH-cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 97 AR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 97 ~~--~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
++ ++++.+..|+..+... .++.|+++|+||+|+.+.....+..+++.. .+++++++||++|.|++++|++|.+.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 98 8999999999988765 368999999999999764333445566665 488999999999999999999999876
Q ss_pred h
Q 030686 172 A 172 (173)
Q Consensus 172 ~ 172 (173)
.
T Consensus 254 ~ 254 (255)
T 3c5h_A 254 D 254 (255)
T ss_dssp H
T ss_pred c
Confidence 4
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=9.1e-30 Score=176.34 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=113.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCc-EEEEEEEeCCCcccccC-cchhhccCCCE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQC 88 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ 88 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++. .+... +..++. .+.+.+|||||++++.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 457999999999999999999999888776655433 33333 444443 68999999999999987 78889999999
Q ss_pred EEEEEECCChh-hhhcHHH-HHHHHhhh---cCCCCEEEEEeCCCCccccccHHHHH----HHH----------------
Q 030686 89 AIIMFDVTARL-TYKNVPT-WHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVT----FHR---------------- 143 (173)
Q Consensus 89 ~i~v~d~~~~~-s~~~~~~-~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~---------------- 143 (173)
+++|+|+++.. ++..... |...+... .++.|+++|+||+|+.+........+ ...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555554 44443331 24789999999999976432221111 100
Q ss_pred -----------------Hc--CCcEEEEccCCC------CChHHHHHHHHHHh
Q 030686 144 -----------------KK--NLQYYEISAKSN------YNFEKPFLYLARKL 171 (173)
Q Consensus 144 -----------------~~--~~~~~~~S~~~~------~~i~~~~~~i~~~i 171 (173)
.. ++.|+++||++| .|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 667999999999 99999999998753
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=3.5e-29 Score=193.00 Aligned_cols=156 Identities=21% Similarity=0.299 Sum_probs=126.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+.. +.+|.+.+...+. ...+.+.+|||+|++.+...+..+++++|+++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEE----SSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEEEE----eCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999998887543 4667776655433 35678999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHH
Q 030686 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|||+++++++..+..|+..+... ..++|+++|+||+|+.+.....+..... ...++.++++||++|.|++++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 474 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 474 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHH
Confidence 999999999999999888887553 2589999999999997644333222211 122446999999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
|++|.+.+
T Consensus 475 ~~~l~~~~ 482 (497)
T 3lvq_E 475 LTWLTSNY 482 (497)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998865
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=2.7e-29 Score=169.00 Aligned_cols=157 Identities=16% Similarity=0.148 Sum_probs=114.8
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
...+.++|+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++ ..+.+|||||++++...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 345679999999999999999999988877665555544444444444443 467899999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHc-------C--CcEEEEccCCCCC
Q 030686 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-------N--LQYYEISAKSNYN 159 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~--~~~~~~S~~~~~~ 159 (173)
+++|+|++++...... .++..+.. .+.|+++|+||+|+.+... .+........ + ++++++||++|.|
T Consensus 82 ~i~v~d~~~~~~~~~~-~~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV-EAINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEEEETTCCCCHHHH-HHHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEEEECCCCCcHHHH-HHHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999999884322211 22223322 3899999999999976421 1222222221 1 5799999999999
Q ss_pred hHHHHHHHHHHh
Q 030686 160 FEKPFLYLARKL 171 (173)
Q Consensus 160 i~~~~~~i~~~i 171 (173)
++++|++|.+.+
T Consensus 158 v~~l~~~l~~~~ 169 (178)
T 2lkc_A 158 LDHLLEMILLVS 169 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=5.9e-29 Score=181.04 Aligned_cols=157 Identities=20% Similarity=0.285 Sum_probs=124.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcc---cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc-----cCcchhhc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~ 83 (173)
..+||+++|.+|+|||||+++++.+... ..+.+|.+....... .. ..+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~--~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR--FL-GNMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEE--ET-TTEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEE--eC-CceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999998876322 234556665554433 23 3689999999999988 78899999
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHH---HHhhhcCCCCEEEEEeCCCCcccc--------ccHHHHHHHHHcC---CcE
Q 030686 84 IHGQCAIIMFDVTARLTYKNVPTWHR---DLCRVCENIPIVLCGNKVDVKNRQ--------VKAKQVTFHRKKN---LQY 149 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~~~~~~~~~~~---~~~ 149 (173)
+++|++++|||++++++++.+..|.. .+....++.|+++|+||+|+.+.. ...+..+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999998876644 444456789999999999997621 1234457777776 799
Q ss_pred EEEccCCCCChHHHHHHHHHHhh
Q 030686 150 YEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 150 ~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+++||++ .++.++|..+.+.++
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 899999999887653
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=5e-29 Score=174.36 Aligned_cols=163 Identities=12% Similarity=0.084 Sum_probs=112.4
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc---------Cc
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GL 78 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~ 78 (173)
..+.+.++|+++|.+|+|||||+++|+.+.+... +..+.+..............+.+|||||+.... ..
T Consensus 24 ~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 24 SINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp SCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH
Confidence 3345679999999999999999999887765422 222222222222222234789999999983211 11
Q ss_pred chhhccCCCEEEEEEECCChhhhhcH--HHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccH----HHHHHHHHcC--CcE
Q 030686 79 RDGYYIHGQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA----KQVTFHRKKN--LQY 149 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~----~~~~~~~~~~--~~~ 149 (173)
...++..+|++++|+|++++.++... ..|+..+....++.|+++|+||+|+.+.. ... ....++...+ +++
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 23456788999999999998876522 34566665544589999999999997632 222 2335666666 899
Q ss_pred EEEccCCCCChHHHHHHHHHHhh
Q 030686 150 YEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 150 ~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+++||++|.|++++|++|.+.+.
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 109
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=4.8e-30 Score=185.93 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=114.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCccc---ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---cchhhccCCCE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQC 88 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~~~ 88 (173)
||+++|..|+|||||++++..+..+. ...+|.|.+...+ +..+.+++|||+|+++|+. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-----~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-----STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-----CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-----ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999866443322 2456777666532 2458999999999999974 46889999999
Q ss_pred EEEEEECCCh--hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--------ccHH-HHHHHHH----cCCcEEEEc
Q 030686 89 AIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKAK-QVTFHRK----KNLQYYEIS 153 (173)
Q Consensus 89 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~~-~~~~~~~----~~~~~~~~S 153 (173)
+++|||++++ ++.+.+..|+..+.+..++.|+++++||+|+.... +..+ ..++++. .++.|+++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 9999999998 33334444455555566899999999999997532 2222 2244553 578999999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 030686 154 AKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~ 172 (173)
|++ .++.++|..+++.++
T Consensus 156 Akd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSS
T ss_pred cCC-CcHHHHHHHHHHHHH
Confidence 998 699999999988764
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.2e-28 Score=167.29 Aligned_cols=156 Identities=16% Similarity=0.191 Sum_probs=118.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------cchhhc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY 83 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~ 83 (173)
+++.++|+++|++|+|||||+++|....+.....++.+.+.....+.. ....+.+|||||++.+.. ++..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY--NGEKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe--CCcEEEEEECCCcCccccccHHHHHHHHHH
Confidence 456899999999999999999998876654444444433443333433 347899999999988753 455566
Q ss_pred c--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 84 I--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 84 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
. .++++++|+|.++. +....|+..+.. .+.|+++|+||+|+... .......+++...+++++++||+++.|+
T Consensus 82 ~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 82 INEKPDLVVNIVDATAL---ERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HHHCCSEEEEEEEGGGH---HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred hccCCCEEEEEecchhH---HHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCH
Confidence 4 49999999998764 444566666655 38899999999998753 3334456778888999999999999999
Q ss_pred HHHHHHHHHHhh
Q 030686 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
.++|+++.+.+.
T Consensus 157 ~~l~~~i~~~~~ 168 (188)
T 2wjg_A 157 EELKKAISIAVK 168 (188)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 111
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.96 E-value=1.7e-28 Score=174.47 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=118.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc------hhhc-
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY- 83 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~------~~~~- 83 (173)
.+.++|+++|.+|+|||||+++|.+..+.....+ |++.......+......+.+|||||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~p--g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWP--GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECT--TSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4579999999999999999999887665433333 444444444444445799999999998877643 5565
Q ss_pred -cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 84 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+.+. ....+...++...+++++++||++|.|++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence 5899999999999876432 355555554 8999999999998753 33334567888889999999999999999
Q ss_pred HHHHHHHHHh
Q 030686 162 KPFLYLARKL 171 (173)
Q Consensus 162 ~~~~~i~~~i 171 (173)
++|+++.+.+
T Consensus 156 el~~~i~~~~ 165 (258)
T 3a1s_A 156 ELKEKIVEYA 165 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=2.2e-28 Score=166.96 Aligned_cols=156 Identities=13% Similarity=0.175 Sum_probs=108.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC----------cccccCcch
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLRD 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~ 80 (173)
...++|+++|.+|+|||||+++|+.+.+...+.++.+.+........+. .+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4579999999999999999999988876666667777666555444433 589999999 666777777
Q ss_pred hhccCC---CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-HH----HHHHcCCcEEEE
Q 030686 81 GYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VT----FHRKKNLQYYEI 152 (173)
Q Consensus 81 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~----~~~~~~~~~~~~ 152 (173)
.+++.+ |++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+....... .+ +....+.+++++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEE
Confidence 787777 9999999999876655432 2233333 48899999999999764432221 22 222346789999
Q ss_pred ccCCCCChHHHHHHHHHHhh
Q 030686 153 SAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i~ 172 (173)
||++|.|++++|+++.+.+-
T Consensus 175 Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 175 SSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred EccCCCCHHHHHHHHHHHhc
Confidence 99999999999999998764
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.96 E-value=2.2e-28 Score=161.94 Aligned_cols=149 Identities=21% Similarity=0.176 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEE--EEEEEEecCcEEEEEEEeCCCcccc-------cCcchhhcc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYI 84 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~ 84 (173)
.||+++|.+|+|||||++++..+.... ..+..+.+. .......+ ...+.+||+||++.+ ...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee-ccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 589999999999999999988776431 122222332 22233333 347899999998873 334556788
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHH
Q 030686 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 163 (173)
.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. .+..+++ ..++ +++++||++|.|++++
T Consensus 79 ~~~~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD-YEVAEYLRR--KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEEL 152 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH-HHHHHHHHH--HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHH
T ss_pred hCCEEEEEEECCCcccHhH-HHHHHHHHh--cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHH
Confidence 9999999999998633221 122222222 388999999999997652 2233444 5666 8999999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
|+++.+.+
T Consensus 153 ~~~l~~~l 160 (161)
T 2dyk_A 153 LEAIWERL 160 (161)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998865
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.96 E-value=7.7e-29 Score=192.50 Aligned_cols=161 Identities=21% Similarity=0.294 Sum_probs=119.9
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEE--------EecCcEEEEEEEeCCCcccccCcch
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--------FTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
.+...+||+++|.+|+|||||++++..+.+...+.+|.|.+...... ..++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 35678999999999999999999999888877777888777664321 2223468999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCC
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~ 158 (173)
.+++++|++++|+|+++. +....|+..+....++.|+++|+||+|+.+... ..+..+.+...+++++++||++|.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999999998765 566788888888877899999999999976332 233456677788899999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030686 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++++++.+.+.
T Consensus 194 gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 194 GVESIAKSLKSAVL 207 (535)
T ss_dssp -CTTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.96 E-value=7.9e-28 Score=175.13 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=123.1
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCc-EEEEEEEeCCCccccc----------
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG---------- 76 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~---------- 76 (173)
..+++.-.|+++|.+|+|||||+|+|++..+.. ..+..+++........... ...+.+|||||+..+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i-~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI-ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccc-cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 345667899999999999999999988776542 2444445554444433334 7889999999987654
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc-cccccHH-HHHHHHHcC--CcEEEE
Q 030686 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKN--LQYYEI 152 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~-~~~~~~~~~--~~~~~~ 152 (173)
..+..+++.+|++++|+|++++.+......|+..+... +.|+++|+||+|+. +.....+ ...+....+ .+++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v 161 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI 161 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 45567788999999999999987777776677777764 89999999999997 4443333 345556654 789999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030686 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|.|++++++++.+.+
T Consensus 162 SA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 162 SALKGANLDELVKTILKYL 180 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHhC
Confidence 9999999999999998865
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=2e-28 Score=164.37 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=107.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 82 (173)
+..||+++|.+|+|||||++++....... ...+....+.....+..++ ..+.+|||||++++... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999987665321 1112212222233344443 46899999998764321 1235
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
++.+|++++|+|++++.++. ...|+..+.... .++|+++|+||+|+.+... .++...+.+++++||++|.|++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv~ 154 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGVD 154 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTHH
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCHH
Confidence 78999999999999988876 346667666553 4799999999999864321 1122346789999999999999
Q ss_pred HHHHHHHHHh
Q 030686 162 KPFLYLARKL 171 (173)
Q Consensus 162 ~~~~~i~~~i 171 (173)
++|++|.+.+
T Consensus 155 ~l~~~l~~~~ 164 (172)
T 2gj8_A 155 VLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=3.2e-27 Score=160.95 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=111.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC----------cccccCcc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~ 79 (173)
....+||+++|.+|+|||||+++++.+. .....++.+.+........+ ..+.+||||| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHHH
Confidence 3456899999999999999999988776 33445666655544433332 2477999999 55666677
Q ss_pred hhhccCC---CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----HHHHHHHH-cCCcEEE
Q 030686 80 DGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK-KNLQYYE 151 (173)
Q Consensus 80 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~-~~~~~~~ 151 (173)
..+++.+ +++++|+|++++.+.... .+...+... +.|+++|+||+|+.+..... +..+++.. .++++++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 7777766 999999999875332221 122223232 78999999999997543222 22344444 3479999
Q ss_pred EccCCCCChHHHHHHHHHHhh
Q 030686 152 ISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+||++|.|++++|+++.+.+.
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHhh
Confidence 999999999999999998764
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=1.8e-28 Score=166.60 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC-----------cccccCcchhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGY 82 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~ 82 (173)
+||+++|.+|+|||||++++..+.+...+.++. +......... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV--TRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC--TTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc--cceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999887765555533 3333333332 689999999 56666777777
Q ss_pred ccC-CCEEEEEEECCChhhhhcH-HHHHHH--------Hhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHHcCCc--
Q 030686 83 YIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-- 148 (173)
Q Consensus 83 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 148 (173)
++. ++++++++++.+..++..+ ..|... +... ..+.|+++|+||+|+.+.. .....+++...+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence 776 7766677777767777665 345432 2111 2589999999999997754 33455677777764
Q ss_pred -----EEEEccCCCCChHHHHHHHHHHhh
Q 030686 149 -----YYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 149 -----~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++++||++|.|++++|+++.+.+.
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 799999999999999999998764
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.95 E-value=9.3e-28 Score=170.45 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC----------cchhhc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY 83 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~ 83 (173)
.+|+++|.+|+|||||+++|.+........+....+.....+..+ +..+.+|||||+..+.. ++..++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG--EHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET--TEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC--CeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 489999999999999999988776543333333333333333333 34899999999987764 455666
Q ss_pred --cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 84 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.++|++++|+|+++.++...+.. .+... +.|+++|+||+|+.... .......+....+++++++||++|.|+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~---~l~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTS---QLFEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHH---HHTTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHH---HHHHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 88999999999998765544433 33333 88999999999987643 233345677788999999999999999
Q ss_pred HHHHHHHHH
Q 030686 161 EKPFLYLAR 169 (173)
Q Consensus 161 ~~~~~~i~~ 169 (173)
+++++++.+
T Consensus 155 ~el~~~i~~ 163 (256)
T 3iby_A 155 PALQQSLLH 163 (256)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999875
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.95 E-value=3.6e-28 Score=174.27 Aligned_cols=153 Identities=14% Similarity=0.142 Sum_probs=112.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc----------chh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDG 81 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------~~~ 81 (173)
++++|+++|.+|+|||||+|+|.+..+.....+ |++.......+......+.+|||||+..+... +..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~--g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECT--TSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCC--CeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 469999999999999999999887765333333 33443333333334467889999999877632 223
Q ss_pred hc--cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccHHHHHHHHHcCCcEEEEccCCCC
Q 030686 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (173)
++ ..+|++++|+|+++.++...+. ..+... +.|+++|+||+|+.+.. .......++...+++++++||++|.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~---~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~ 154 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLT---LQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR 154 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHH---HHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHH---HHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 33 6899999999999876544433 344443 89999999999987633 2233456777889999999999999
Q ss_pred ChHHHHHHHHHHh
Q 030686 159 NFEKPFLYLARKL 171 (173)
Q Consensus 159 ~i~~~~~~i~~~i 171 (173)
|++++++++.+.+
T Consensus 155 gi~el~~~i~~~~ 167 (274)
T 3i8s_A 155 GIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987643
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.95 E-value=9e-28 Score=171.76 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=116.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------cchhhcc--
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI-- 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~-- 84 (173)
.++|+++|++|+|||||+++|.+..... ....|++.......+.. ...+.+|||||+..+.. ++..++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v--~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV--GNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC--CSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc--cCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 5899999999999999999988665322 22345566555555555 67899999999988763 4566665
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
.+|++++|+|+++.++. ..|...+.+ .+.|+++|+||+|+... ....+...++...+++++++||++|.|++++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 59999999999987543 345555554 38999999999998653 3334456778888999999999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
|+++.+.+
T Consensus 155 ~~~i~~~~ 162 (272)
T 3b1v_A 155 VKKAAHTT 162 (272)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHH
Confidence 99998743
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=2.8e-27 Score=164.74 Aligned_cols=159 Identities=17% Similarity=0.051 Sum_probs=111.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcc----------cccCcc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQE----------KFGGLR 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~----------~~~~~~ 79 (173)
...++|+++|.+|+|||||+++|+.+........+.+++......... .....+.+|||||.. .+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 456899999999999999999988776333334455555544444443 455789999999953 334455
Q ss_pred hhhccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----HHHHHHHH-------c
Q 030686 80 DGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK-------K 145 (173)
Q Consensus 80 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~-------~ 145 (173)
..++.. +|++++|+|++++.+. ....++..+.. .+.|+++|+||+|+.+..... ...+.... .
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAG 183 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCC
Confidence 556655 7889999999875331 22345555555 388999999999997643321 11222222 5
Q ss_pred CCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 146 NLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 146 ~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+.+++++||++|.|+.+++++|.+.+.
T Consensus 184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 184 KLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp CEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred CCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 678999999999999999999988763
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.94 E-value=1.9e-26 Score=165.14 Aligned_cols=154 Identities=17% Similarity=0.115 Sum_probs=114.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------cchhhc--
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY-- 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~-- 83 (173)
+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.. ....+.+|||||+..+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY--REKEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE--TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE--CCceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4689999999999999999998877664444444444444334433 345699999999988776 456666
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
.++|++++|+|+++.+. ...|...+... ...|+++|+||+|+.+. ........+....+++++++||++|.|+.+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE 155 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence 68999999999998642 22334444443 13999999999998753 233345677788899999999999999999
Q ss_pred HHHHHHHHh
Q 030686 163 PFLYLARKL 171 (173)
Q Consensus 163 ~~~~i~~~i 171 (173)
+++++.+.+
T Consensus 156 l~~~i~~~~ 164 (271)
T 3k53_A 156 LKRMIALMA 164 (271)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=1.6e-26 Score=167.62 Aligned_cols=156 Identities=19% Similarity=0.132 Sum_probs=109.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc--------cCcchhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~ 82 (173)
.+..+|+++|.+|+|||||+|+|++...... .+..+++..............+.+|||||+... ......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~iv-s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeee-cCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4567899999999999999999887765321 222233333333223335678999999998763 3345567
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHH-HHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHH--cCCcEEEEccCCCCC
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK--KNLQYYEISAKSNYN 159 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~ 159 (173)
++.+|++++|+|++++.+.. ..| +..+....++.|+++|+||+|+.+.... ..+.... ...+++++||++|.|
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~g 159 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHELLPEAEPRMLSALDERQ 159 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHTSTTSEEEECCTTCHHH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHhcCcCcEEEEeCCCCCC
Confidence 89999999999998764332 333 3455554458999999999999754320 1222222 235689999999999
Q ss_pred hHHHHHHHHHHh
Q 030686 160 FEKPFLYLARKL 171 (173)
Q Consensus 160 i~~~~~~i~~~i 171 (173)
++++++++.+.+
T Consensus 160 v~~l~~~l~~~l 171 (301)
T 1wf3_A 160 VAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.94 E-value=4.4e-26 Score=173.96 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=97.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc--------hhhcc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYI 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~~ 84 (173)
.++|+++|.+|+|||||+|+|+..... ......+++.......+...++.+.+|||||++.+...+ ..+++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a-~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERA-IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 488999999999999999997765421 123334445444333333345789999999987765433 44688
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030686 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
.+|++++|+|++++.+++.+..+...+.. ..+.|+++|+||+|+.+..... ...+......+++++||++|.|+++++
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~-~~~l~~~~~~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADAL-IRAIADGTGTEVIGISALNGDGIDTLK 389 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHH-HHHHHHHHTSCEEECBTTTTBSHHHHH
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchh-HHHHHhcCCCceEEEEECCCCCHHHHH
Confidence 99999999999998887654444333332 3489999999999997654322 223343334789999999999999999
Q ss_pred HHHHHHhh
Q 030686 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 390 ~~i~~~~~ 397 (476)
T 3gee_A 390 QHMGDLVK 397 (476)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHh
Confidence 99988653
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=3.8e-27 Score=163.59 Aligned_cols=140 Identities=17% Similarity=0.180 Sum_probs=99.5
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccc---cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccC-
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH- 85 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~- 85 (173)
..+.++|+++|++|+|||||+++|..+.+... +.++.+.+ .....+.+||+||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45679999999999999999999988776442 22222211 145678999999999999888888887
Q ss_pred ---CCEEEEEEECC-ChhhhhcHHHHHHHHhhh-----cCCCCEEEEEeCCCCcccccc--------HHHHHHHHHcCCc
Q 030686 86 ---GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNLQ 148 (173)
Q Consensus 86 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~~~ 148 (173)
+|++++|+|++ +++++.....|+..+... .++.|+++|+||+|+...... .+...++...++.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888887777653 258999999999999764331 2223444444455
Q ss_pred EEEEccCCCC
Q 030686 149 YYEISAKSNY 158 (173)
Q Consensus 149 ~~~~S~~~~~ 158 (173)
++++|++++.
T Consensus 160 ~~~~Sa~~~~ 169 (218)
T 1nrj_B 160 LNEVERKINE 169 (218)
T ss_dssp HHC-------
T ss_pred cccccccccc
Confidence 5556655544
No 127
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.93 E-value=1.3e-26 Score=174.27 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=111.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEE--EEEEecCcEEEEEEEeCCCcccccCc-------ch
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGL-------RD 80 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~-------~~ 80 (173)
....++|+++|..|+|||||+++|+...+... ....+++... ..+...+. ..+.+|||||++.+... +.
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 34579999999999999999999876654221 2233333332 33333332 38999999999887665 34
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.++..+|++++|+|++..+ ....|+..+.+. +.|+++|+||+|+.+........+++..++++++++||++|.|+
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI 183 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGF 183 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 4788999999999994332 234566666665 89999999999998766555555666777899999999999999
Q ss_pred HHHHHHHHHHh
Q 030686 161 EKPFLYLARKL 171 (173)
Q Consensus 161 ~~~~~~i~~~i 171 (173)
+++|++|.+.+
T Consensus 184 ~eL~~~L~~~l 194 (423)
T 3qq5_A 184 DDIGKTISEIL 194 (423)
T ss_dssp TTHHHHHHHHS
T ss_pred HHHHHHHHHhh
Confidence 99999999876
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.93 E-value=9.2e-25 Score=161.99 Aligned_cols=157 Identities=21% Similarity=0.201 Sum_probs=115.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccc--cceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---------cc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LR 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~ 79 (173)
...++|+++|.+|+|||||++++.+........ .+.+... .........+.+|||||...... ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINV----GQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEE----EEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeE----EEEEecCceEEEEeCCCccccchhhhhHHHHHHH
Confidence 456899999999999999999987665322111 1222221 12222356899999999754321 11
Q ss_pred hhhccCCCEEEEEEECCChh--hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCC
Q 030686 80 DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
..+...+|++++|+|++++. ++.....|+..+....++.|+++|+||+|+.......+..+++...+++++++||++|
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence 13445699999999999876 5666677888887765589999999999998754334455666678899999999999
Q ss_pred CChHHHHHHHHHHh
Q 030686 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
+|++++++++.+.+
T Consensus 321 ~gi~~l~~~i~~~l 334 (357)
T 2e87_A 321 TGIDLVKEEIIKTL 334 (357)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998865
No 129
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.92 E-value=9.6e-25 Score=160.93 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=93.0
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCC----------hhhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..+.+++||++|+++++..|..++++++++|+|+|+++ ..++.....|+..+... .+++|+++++||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46889999999999999999999999999999999998 45677777787777653 3689999999999
Q ss_pred CCcccc-----------------ccHHHHHHHH-----------HcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 128 DVKNRQ-----------------VKAKQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~-----------------~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+.... ...+...++. ..++.++++||+++.|+.++|+++.+.++
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 985321 2234445554 35678999999999999999999998764
No 130
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=1.7e-24 Score=162.88 Aligned_cols=161 Identities=17% Similarity=0.088 Sum_probs=112.9
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEE---------EE-------Ee---cCcEEEEEEEeC
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL---------DF-------FT---NCGKIRFYCWDT 69 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~---------~~-------~~---~~~~~~~~~~D~ 69 (173)
...+.++|+++|.+++|||||+++|........ ......+.... .. .. ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 445679999999999999999999775432211 11111110000 00 00 112378999999
Q ss_pred CCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH----HHHHHH-
Q 030686 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHRK- 144 (173)
Q Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~- 144 (173)
||++.|...+..++..+|++++|+|++++.+......++..+... ...|+++|+||+|+.+.....+. .++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999876556666666655544 24589999999999764322222 122222
Q ss_pred --cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 145 --KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 145 --~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+++++++||++|.|+++++++|.+.+
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 257899999999999999999998754
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=1.7e-25 Score=169.83 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=106.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc----------cccCcch
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLRD 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~ 80 (173)
...+||+++|.+|+|||||++++++..... ..+..+++.......+...+..+.+|||||+. .|...+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~-~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE-EC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCcee-ecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 356999999999999999999988765421 12233444443322222233468999999983 3333322
Q ss_pred -hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc--HHHH-HHHH----HcCCcEEEE
Q 030686 81 -GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-TFHR----KKNLQYYEI 152 (173)
Q Consensus 81 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~-~~~~----~~~~~~~~~ 152 (173)
.+++.+|++++|+|++++.+.++. .|...+.. .+.|+++|+||+|+.+.... .+.. .+.. ..+++++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 477899999999999998777665 45555554 48999999999999764321 1221 2222 246899999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030686 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|.|+.++|+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHH
Confidence 9999999999999988754
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=6.5e-25 Score=166.81 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc---------cCcchhhcc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYI 84 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~ 84 (173)
.+|+++|.+|+|||||+|+|+++... ....+.|++...........+..+.+|||||.+.. +..+..+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc-eecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 37999999999999999998866532 23445566655443333223457899999997642 334566889
Q ss_pred CCCEEEEEEECCChhhhh--cHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-HHHHHHcCC-cEEEEccCCCCCh
Q 030686 85 HGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNF 160 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~-~~~~~S~~~~~~i 160 (173)
++|++++|+|++++.+.. .+..|+ ... ++|+++|+||+|+.+.. ..+. .+++ ..++ .++++||++|.|+
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l---~~~--~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFL---RKS--TVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHH---HHH--TCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHH---HHc--CCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCH
Confidence 999999999998754332 222232 222 88999999999986531 1222 3333 4565 7899999999999
Q ss_pred HHHHHHHHHHh
Q 030686 161 EKPFLYLARKL 171 (173)
Q Consensus 161 ~~~~~~i~~~i 171 (173)
.++++++.+.+
T Consensus 154 ~~L~~~i~~~l 164 (439)
T 1mky_A 154 DTMLETIIKKL 164 (439)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.92 E-value=2.3e-25 Score=170.13 Aligned_cols=152 Identities=20% Similarity=0.164 Sum_probs=105.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc-cccC--------cchhhc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGG--------LRDGYY 83 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~~~--------~~~~~~ 83 (173)
.++|+++|.+|+|||||+|+|....... .....+++.......+......+.+|||||.+ .+.. ....++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~-vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAI-VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCC-CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCc-cCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 3899999999999999999988764321 12222333332222222235679999999988 6543 234578
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030686 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
..+|++++|+|++++.+++... +++.+ .+.|+++|+||+|+.+.....+..+++ ..+.+++++||++|.|++++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL 395 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEKL 395 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHHH
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHHH
Confidence 8999999999999886655432 22222 488999999999997642222222332 24478999999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
+++|.+.+
T Consensus 396 ~~~l~~~~ 403 (482)
T 1xzp_A 396 EESIYRET 403 (482)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998864
No 134
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.92 E-value=1.9e-24 Score=168.67 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=110.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCC--ccc-----c------cccceeEEEEEEEEEe-----cCcEEEEEEEeCCCcc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEK-----K------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~ 73 (173)
+..+|+++|+.++|||||+++|+... ... . .....|.+.......+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35799999999999999999987521 110 0 0112344443222222 4456899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC---cEE
Q 030686 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (173)
.|...+..+++.+|++++|+|++++.+.+....|...... ++|+++|+||+|+.+........++....++ .++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 159 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV 159 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence 9999999999999999999999988777776666655432 8899999999999875433333455556665 489
Q ss_pred EEccCCCCChHHHHHHHHHHhh
Q 030686 151 EISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++||++|.|++++++++.+.+.
T Consensus 160 ~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 160 RCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp EECTTTCTTHHHHHHHHHHHSC
T ss_pred EeecccCCCchhHHHHHhhcCC
Confidence 9999999999999999988653
No 135
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.92 E-value=2.2e-24 Score=157.05 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=89.5
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECC----------ChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..+.+++||++|+++++..|.+|+++++++|+|+|++ +..++.....|+..+... ..++|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 5689999999999999999999999999999999765 556666666777766543 3689999999999
Q ss_pred CCcccc------------------ccHHHHHHH----------HHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 128 DVKNRQ------------------VKAKQVTFH----------RKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~------------------~~~~~~~~~----------~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+..+. ..++..++. ...++.++++||+++.|++++|+.+.+.++
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 986532 122333442 234567889999999999999999998775
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=1.1e-24 Score=160.12 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCccc-ccc-cceeEEEEEEEEEecCcEEEEEEEeCCCcc----cccCcchhhccC---
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEK-KYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----KFGGLRDGYYIH--- 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~--- 85 (173)
+|+++|.+|+|||||++++....... .+. .|...+.. .+..+ ....+.+|||||.. .+..+...|++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 68899999999999999977654321 111 12222221 22222 23579999999953 344566666554
Q ss_pred CCEEEEEEECCC---hhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHHHHHHHHHcC--CcEEEEccCCC
Q 030686 86 GQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN 157 (173)
Q Consensus 86 ~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~ 157 (173)
++++++|+|+++ +.+++.+..|...+..+. .++|+++|+||+|+.... +...++..... .+++++||+++
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCC
Confidence 999999999998 778888888888887764 489999999999997643 22344555555 68999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030686 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.|+++++++|.+.+.
T Consensus 315 ~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 315 EGLRELLFEVANQLE 329 (342)
T ss_dssp STTHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998764
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=2.3e-25 Score=169.15 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=99.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc--------cccCcchhhcc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYI 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~ 84 (173)
..+|+++|.+|+|||||+|+|++.... ....+.|++...........+..+.+|||||++ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 368999999999999999998765543 346677887776666666566789999999985 45666777899
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHH
Q 030686 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 163 (173)
++|++++|+|+.++.+..+. .+...+.. .++|+++|+||+|+..... +..++. ..++ .++++||++|.|+.++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~-~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE-EVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDL 155 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH-HHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHH
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHH
Confidence 99999999999886554321 22233333 4889999999999875421 111222 3344 7899999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
++++.+.+
T Consensus 156 ~~~i~~~l 163 (436)
T 2hjg_A 156 LDAVAEHF 163 (436)
T ss_dssp HHHHHHTG
T ss_pred HHHHHHhc
Confidence 99998765
No 138
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=1.8e-24 Score=165.12 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=106.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC----------cccccCcch
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLRD 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~ 80 (173)
...+||+++|.+|+|||||+++++..... ...+..+++.......+......+.+||||| ++.+...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE-EECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcc-ccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 45699999999999999999998755421 2233334444432222222334899999999 566655544
Q ss_pred -hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc--HHHHHHHHHc-----CCcEEEE
Q 030686 81 -GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKK-----NLQYYEI 152 (173)
Q Consensus 81 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~-----~~~~~~~ 152 (173)
.+++.+|++++|+|++++.+.+. ..|...+.. .++|+++|+||+|+.+.... .+..+.+.+. .++++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 47789999999999987543222 344445544 48999999999999763322 2333444333 5889999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030686 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|.|++++|+++.+.+
T Consensus 349 SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 349 SALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp CTTTCTTGGGHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999998765
No 139
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=6.4e-24 Score=154.05 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=107.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc---------cccCcchh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDG 81 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~ 81 (173)
.+..+|+++|++|+|||||++++++..... ..+..+++.......+......+.+|||||+. .+......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i-~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI-TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEE-CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccc-cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 455789999999999999999988766432 12222333322222233345689999999987 34455667
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCC-cEEEEccCCCC
Q 030686 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNL-QYYEISAKSNY 158 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~-~~~~~S~~~~~ 158 (173)
+++.+|++++|+|+++ +.....++..... ..+.|+++++||+|+.. +... ....++....+. .++++||+++.
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 7899999999999976 2333333322222 13789999999999976 2222 223345555565 68999999999
Q ss_pred ChHHHHHHHHHHh
Q 030686 159 NFEKPFLYLARKL 171 (173)
Q Consensus 159 ~i~~~~~~i~~~i 171 (173)
|+.++++.+.+.+
T Consensus 161 ~v~~l~~~i~~~l 173 (301)
T 1ega_A 161 NVDTIAAIVRKHL 173 (301)
T ss_dssp THHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhC
Confidence 9999999987643
No 140
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.91 E-value=6.5e-24 Score=165.42 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=112.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC--Ccccc-----c------ccceeEEEEE----EEEEe-cCcEEEEEEEeCCCcc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK-----Y------EPTIGVEVHP----LDFFT-NCGKIRFYCWDTAGQE 73 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~-----~------~~~~~~~~~~----~~~~~-~~~~~~~~~~D~~G~~ 73 (173)
+..+|+++|..++|||||+++|+.. ..... . ....|.+... ..+.. ++..+.+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3579999999999999999998752 21110 0 0112333221 11111 3456899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC---cEE
Q 030686 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (173)
.|...+..+++.+|++++|+|++++.+.+....|..... .++|+++|+||+|+..........++....++ .++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence 999888889999999999999999877777666655543 38999999999999875433333455555565 489
Q ss_pred EEccCCCCChHHHHHHHHHHhh
Q 030686 151 EISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++||++|.|+.++++++.+.+.
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeecCCCchHHHHHHHHhcc
Confidence 9999999999999999988653
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.91 E-value=5.7e-24 Score=151.43 Aligned_cols=162 Identities=10% Similarity=0.073 Sum_probs=100.2
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCC-cccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchh------
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG------ 81 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~------ 81 (173)
...+.++|+++|.+|+|||||++++++.. +.....++ +++..............+.+|||||+..+......
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34567999999999999999999988766 33322222 12222222222224467999999998765433222
Q ss_pred -----hccCCCEEEEEEECCChhh-hhcHHHHHHHHhhhcCCCCEEEEEe-CCCCccccccH--------HHHHHHHHcC
Q 030686 82 -----YYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKKN 146 (173)
Q Consensus 82 -----~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~--------~~~~~~~~~~ 146 (173)
+++.+|++++|+|++.... ...+..++..+.......|.++++| |+|+....... +...+....+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence 5688999999999986221 1122223333221111457777776 99997542211 1223444444
Q ss_pred Cc---E--EEEccCCCCChHHHHHHHHHHh
Q 030686 147 LQ---Y--YEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 147 ~~---~--~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.. + +++||+++.|+.++|+++.+.+
T Consensus 177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 177 GRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 32 2 7899999999999999998765
No 142
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.91 E-value=4.8e-24 Score=157.17 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=89.1
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECC----------ChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..+.+++|||+|+++++..|..++++++++|+|||++ +..+++....|+..+... .+++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 778888888888887653 3689999999999
Q ss_pred CCccccc-----------------------cHHHHHHHHH----------------cCCcEEEEccCCCCChHHHHHHHH
Q 030686 128 DVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 128 Dl~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+..+.. .++...++.. ..+.++++||+++.|++++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854211 1223344222 123468999999999999999998
Q ss_pred HHhh
Q 030686 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.++
T Consensus 341 ~~I~ 344 (354)
T 2xtz_A 341 ETLR 344 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=5.3e-23 Score=154.97 Aligned_cols=160 Identities=15% Similarity=0.086 Sum_probs=100.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC---Cccccccc--ceeEEEEEEEEEe-------------c--C----cEEEEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFYC 66 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~~ 66 (173)
.+.++|+++|..++|||||+++|.+. .+.....+ |....+....... + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45799999999999999999997632 22222222 4433333322211 1 1 1378999
Q ss_pred EeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHHH
Q 030686 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFH 142 (173)
Q Consensus 67 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~ 142 (173)
||+||++.|...+...+..+|++++|+|++++.........+..+.. ....|+++++||+|+.+... .++..+++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l 164 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV 164 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 99999999887777778889999999999964211111122222222 22458999999999976432 12233444
Q ss_pred HH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 143 RK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 143 ~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.. .+++++++||++|+|+++++++|.+.+
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 43 367899999999999999999998754
No 144
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.90 E-value=7.4e-24 Score=162.67 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=100.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCC--cccc---------------------------cccceeEEEEEEEEEecCcE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (173)
.+.+||+++|.+++|||||+++|+... +... .....|++.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 356999999999999999999987541 1110 01112444444444455567
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhc-----HHHHHHHHhhhcCCCCEEEEEeCCCCccc--cc
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----VPTWHRDLCRVCENIPIVLCGNKVDVKNR--QV 134 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~ 134 (173)
+.+.+|||||+++|...+..++..+|++++|+|++++.+... ...+...+.......|+++|+||+|+.+. ..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 889999999999999999999999999999999998754322 12222233333334569999999999762 11
Q ss_pred cHH----HHHHHHHc-----CCcEEEEccCCCCChHH
Q 030686 135 KAK----QVTFHRKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 135 ~~~----~~~~~~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
.++ ...+.... +++++++||++|.|+.+
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 111 22233322 46799999999999975
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=1.1e-24 Score=165.71 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=96.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEE--EEEEecCcEEEEEEEeCCCcccccCc--------chhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 82 (173)
.++|+++|.+|+|||||+|+|+....... ....+++... ..+.. .+..+.+|||||...+... ...+
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~--~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIV-TDLPGTTRDVVESQLVV--GGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCC-SCCTTCCHHHHHHEEEE--TTEEEEECC--------------------CC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCeeEEEEEEEEEE--CCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 47899999999999999999886543211 1112222222 22333 3467899999998665433 2336
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
+..+|++++|+|++++.+... ..++..+ .+.|+++|+||+|+...........+. ...+++++||++|.|+++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHHH
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHHH
Confidence 788999999999998755433 3343333 357999999999997644322111111 357899999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
++++|.+.+.
T Consensus 374 L~~~i~~~~~ 383 (462)
T 3geh_A 374 LETAILEIVQ 383 (462)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988763
No 146
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.90 E-value=1.7e-23 Score=160.32 Aligned_cols=159 Identities=19% Similarity=0.146 Sum_probs=107.4
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCC----ccc-ccccceeEEEEE--EEEEecCcEEEEEEEeCCCcccccCcch
Q 030686 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE----FEK-KYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~----~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
...++.++|+++|..++|||||+++|.... ... ......|++... ..+.. ....+.+|||||++.|...+.
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~iiDtPGh~~~~~~~~ 91 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAVV 91 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE--CCEEEEEEECCChHHHHHHHH
Confidence 344568999999999999999999987654 110 001111222221 12222 347899999999999988888
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc----HHHHHHHHHc----CCcEEEE
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEI 152 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~----~~~~~~~ 152 (173)
.++..+|++++|+|+++...-+. ...+..+.. .++|+++++||+|+.+.... .+..+++... +.+++++
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQT-GEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHH-HHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred HHHhhCCEEEEEEecCCCccHHH-HHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 89999999999999987421111 122223333 27899999999999763221 2223444444 5789999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030686 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|+|+.+++++|.+.+
T Consensus 169 SA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhh
Confidence 9999999999999998754
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=2.2e-25 Score=171.63 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=109.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+..+|+++|.+++|||||+++|....+.....++.+.+.....+..+ ....+.+|||||++.|..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 45789999999999999999988765544333333222222222221 23478999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHH------Hc--CCcEEEEccCCCCChHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR------KK--NLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~--~~~~~~~S~~~~~~i~~~ 163 (173)
|+|++++...+.... +..+.. .++|+++++||+|+.+.........+.. .+ .++++++||++|.|++++
T Consensus 82 VVDa~dg~~~qt~e~-l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 82 VVAADDGVMKQTVES-IQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp ECBSSSCCCHHHHHH-HHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEECCCCccHHHHHH-HHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 999998654433322 223332 3889999999999975332211111111 11 357899999999999999
Q ss_pred HHHHHHHh
Q 030686 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
++++...+
T Consensus 159 le~I~~l~ 166 (537)
T 3izy_P 159 AEATIALA 166 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998753
No 148
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=147.04 Aligned_cols=161 Identities=9% Similarity=0.009 Sum_probs=101.7
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc-----------cccC
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----------KFGG 77 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----------~~~~ 77 (173)
.....+||+++|.+|+|||||++++++........+..+++..............+.+|||||.. .+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34567999999999999999999988877655444433334333333332344688999999943 2333
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh---cCCCCEEEEEeCCCCcccccc--------HHHHHHHHHcC
Q 030686 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN 146 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~ 146 (173)
....+++.+|++++|+|++.... ....++..+... ....|+++|+||+|+...... .....+....+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 34445667899999999875432 112233333221 125699999999998653221 24556777888
Q ss_pred CcEEEEccCCC-----CChHHHHHHHHHHh
Q 030686 147 LQYYEISAKSN-----YNFEKPFLYLARKL 171 (173)
Q Consensus 147 ~~~~~~S~~~~-----~~i~~~~~~i~~~i 171 (173)
..++.++...+ .++.++++.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 88888887754 68999998877654
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.90 E-value=1.2e-23 Score=162.37 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=84.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC------------------Cccccc--ccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTG------------------EFEKKY--EPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
+..+|+++|.+|+|||||+++|+.. ...... ....|.+.......+....+.+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 4579999999999999999998611 010000 00123333333333334568899999999
Q ss_pred cccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030686 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
+..+...+..+++.+|++++|+|++++.+.+....| ..+... ++|+++|+||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 999999999999999999999999987665554444 333333 8999999999999653
No 150
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=4.9e-23 Score=152.33 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=84.9
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCC----------hhhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..+.+++||++|+++++..|..++++++++|+|+|+++ ..++.....|+..+... ..++|+++++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 35889999999999999999999999999999999998 67888888888887653 3689999999999
Q ss_pred CCcccc-----------------c-cHHHHHHH--------H---HcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 128 DVKNRQ-----------------V-KAKQVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~-----------------~-~~~~~~~~--------~---~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+.... . ..+...++ . ..++.++++||+++.|++++|+++.+.++
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 986421 1 22333433 1 34577899999999999999999988764
No 151
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.90 E-value=8.1e-24 Score=154.59 Aligned_cols=113 Identities=13% Similarity=0.185 Sum_probs=90.1
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECC----------ChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..+.+++||++|+++++..|..|+++++++|+|+|++ +..++.....|+..+... ..++|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 677788777777777653 3689999999999
Q ss_pred CCccccc-----------------cHHHHHHHH-H--------------------------cCCcEEEEccCCCCChHHH
Q 030686 128 DVKNRQV-----------------KAKQVTFHR-K--------------------------KNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 128 Dl~~~~~-----------------~~~~~~~~~-~--------------------------~~~~~~~~S~~~~~~i~~~ 163 (173)
|+..+.. .++...++. + ..+.++++||++..+++.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 9864211 122222221 1 2366889999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+.+.+.++
T Consensus 319 F~~v~~~Il 327 (340)
T 4fid_A 319 FMLAVDVIM 327 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998775
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.90 E-value=6.7e-23 Score=155.54 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=104.9
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCC--cccc---------------------------cccceeEEEEEEEEEecC
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YEPTIGVEVHPLDFFTNC 59 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~ 59 (173)
.....++|+++|.+++|||||+++|+... .... .....|++.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34567999999999999999999985421 1100 011134455444444455
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhh---hh---cHHHHHHHHhhhcCCCC-EEEEEeCCCCccc
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 132 (173)
....+.+|||||+++|...+..++..+|++++|+|+++... +. .....+..+.. .++| +++++||+|+...
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence 66799999999999999999999999999999999998632 21 11122222222 2677 9999999999642
Q ss_pred cc--------cHHHHHHHHHcC------CcEEEEccCCCCChHHHHH
Q 030686 133 QV--------KAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 133 ~~--------~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~~ 165 (173)
.. ..+...++...+ ++++++||++|.|+.++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 112223444433 5799999999999998554
No 153
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=5e-23 Score=145.54 Aligned_cols=159 Identities=11% Similarity=0.002 Sum_probs=102.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc--------cccCcchhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~ 82 (173)
.+.+||+++|.+|+|||||+|++++........+..+++..............+.+|||||.. .+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 467999999999999999999988776544333333444443333333356789999999963 222222223
Q ss_pred c----cCCCEEEEEEECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCcccccc--------HHHHHHHHHcC
Q 030686 83 Y----IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN 146 (173)
Q Consensus 83 ~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~ 146 (173)
+ +.+|++++|+|++.... ....++..+.+.. .+.|+++++||+|+.+.... .....+....+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 3 89999999999985321 1122333333321 36899999999999763221 23456677778
Q ss_pred CcEEEEccCC-----CCChHHHHHHHHHHh
Q 030686 147 LQYYEISAKS-----NYNFEKPFLYLARKL 171 (173)
Q Consensus 147 ~~~~~~S~~~-----~~~i~~~~~~i~~~i 171 (173)
..++.++... +.|+.++++.+.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 8888777665 579999999987765
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.90 E-value=1.8e-22 Score=152.22 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=107.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC---Cccccccc--ceeEEEEEEEEEe-------------c--C----cEEEEE
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFY 65 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 65 (173)
+.+.++|+++|..++|||||+++|.+. .+.....+ |....+....... + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 455799999999999999999998732 22333223 4433333333211 0 1 137899
Q ss_pred EEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHH
Q 030686 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTF 141 (173)
Q Consensus 66 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~ 141 (173)
+|||||++.|.......+..+|++++|+|++++.........+..+... ...|+++++||+|+.+... .++..++
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 165 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYRQIKEF 165 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence 9999999998877777788899999999999642111111222222222 2457999999999976432 1222334
Q ss_pred HHH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 142 HRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 142 ~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+.. .+++++++||++|.|+++++++|.+.+
T Consensus 166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 433 367899999999999999999998754
No 155
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.90 E-value=1.8e-23 Score=157.06 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=110.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCC-------ccc-------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
+.+||+++|.+++|||||+++|+... +.. ......|.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999987531 110 0011234444433344445567899999999999988
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccc-----ccHHHHHHHHHcC-----
Q 030686 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-----VKAKQVTFHRKKN----- 146 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~----- 146 (173)
.+..++..+|++++|+|+++....+... ++..+.. .++| +++++||+|+.+.. ...+..+++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 8888899999999999999864333322 2233333 2788 78999999997521 1123345555554
Q ss_pred CcEEEEccCCCCC----------hHHHHHHHHHHh
Q 030686 147 LQYYEISAKSNYN----------FEKPFLYLARKL 171 (173)
Q Consensus 147 ~~~~~~S~~~~~~----------i~~~~~~i~~~i 171 (173)
++++++||++|.| +.++++++.+.+
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 889999887754
No 156
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.4e-23 Score=141.69 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=89.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccc---cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccC--
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH-- 85 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~-- 85 (173)
...++|+++|++|+|||||++++..+.+... ..++.+ .+.....+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 4568999999999999999999888765431 111111 11145678999999999998888888876
Q ss_pred --CCEEEEEEECC-ChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccccccH
Q 030686 86 --GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA 136 (173)
Q Consensus 86 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~ 136 (173)
+|++++|+|++ +++++..+..|+..+.... ++.|+++|+||+|+.+.....
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 175 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 175 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHH
Confidence 89999999999 8899988888877775432 489999999999997754433
No 157
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.89 E-value=2e-23 Score=149.70 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=91.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCc-cccc-------ccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-------
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------- 76 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------- 76 (173)
..++|+++|.+|+|||||+|+++.... ...+ .++.+.+........++..+.+.+|||||.....
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 469999999999999999999665433 3332 4555555555555555566799999999974322
Q ss_pred Ccc-------hhhcc-------------CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH
Q 030686 77 GLR-------DGYYI-------------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (173)
Q Consensus 77 ~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (173)
.+. ..++. .+|+++++++.+.......-..++..+.. ++|+++|+||+|+.......
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~ 163 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQ 163 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHH
Confidence 111 22222 37799999987653211222234444444 89999999999986533221
Q ss_pred ----HHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 137 ----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 137 ----~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
...+.....++.++++|+.+++|+.+++++|.+.+
T Consensus 164 ~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 164 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 23345556789999999999999999999987653
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.89 E-value=1.1e-23 Score=158.51 Aligned_cols=159 Identities=15% Similarity=0.098 Sum_probs=112.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC--------Ccccc-------cccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
....++|+++|.+++|||||+++|+.. .+... .....|.+.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 346799999999999999999998762 11100 011334444444444555667899999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccc-cc----cHHHHHHHHHcC--
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-QV----KAKQVTFHRKKN-- 146 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~-~~----~~~~~~~~~~~~-- 146 (173)
|...+..++..+|++++|+|++++...+ ...++..+... ++| +++++||+|+.+. .. ..+..+++...+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 9888888999999999999999865332 33444554443 788 8999999999742 11 112334555554
Q ss_pred ---CcEEEEccCCCCC------------------hHHHHHHHHHHh
Q 030686 147 ---LQYYEISAKSNYN------------------FEKPFLYLARKL 171 (173)
Q Consensus 147 ---~~~~~~S~~~~~~------------------i~~~~~~i~~~i 171 (173)
.+++++||++|.| +.++++++.+.+
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 6899999999987 778888877643
No 159
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=5.6e-24 Score=162.36 Aligned_cols=155 Identities=18% Similarity=0.131 Sum_probs=102.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC--------cccccCcchhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLRDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~ 82 (173)
+...+|+++|.+|+|||||+|+|++.... ....+.|++..............+.+||||| ++++...+..+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 45679999999999999999998776543 3456778888777777776777999999999 66677778888
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
++.+|++++|+|..++. .....++..+... .++|+++|+||+|+.+... ...++........+++||++|.|+.+
T Consensus 100 ~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~--~~~e~~~lg~~~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGV--TAADEEVAKILYR-TKKPVVLAVNKLDNTEMRA--NIYDFYSLGFGEPYPISGTHGLGLGD 174 (456)
T ss_dssp HHHCSEEEEEEESSSCS--CHHHHHHHHHHTT-CCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTHHH
T ss_pred HhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH-cCCCEEEEEECccchhhhh--hHHHHHHcCCCceEEeecccccchHH
Confidence 99999999999987643 2223333333222 4899999999999865321 11122222223568999999999999
Q ss_pred HHHHHHHHh
Q 030686 163 PFLYLARKL 171 (173)
Q Consensus 163 ~~~~i~~~i 171 (173)
+++++.+.+
T Consensus 175 L~~~i~~~l 183 (456)
T 4dcu_A 175 LLDAVAEHF 183 (456)
T ss_dssp HHHHHHTTG
T ss_pred HHHHHHhhc
Confidence 999987654
No 160
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.89 E-value=1.7e-22 Score=150.59 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=91.2
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCC----------hhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCC
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D 128 (173)
.+.+++|||+|+++++..|..|+++++++|+|||+++ ..++.....|+..+... .+++|+++|+||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 4789999999999999999999999999999999999 88999999999888764 36899999999999
Q ss_pred Cccccc--------------------------------cHHHHHH-----HHH--------cCCcEEEEccCCCCChHHH
Q 030686 129 VKNRQV--------------------------------KAKQVTF-----HRK--------KNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 129 l~~~~~--------------------------------~~~~~~~-----~~~--------~~~~~~~~S~~~~~~i~~~ 163 (173)
+..... ..+...+ +.. ..+.++++||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 854211 1122233 222 2456789999999999999
Q ss_pred HHHHHHHhh
Q 030686 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+++.+.++
T Consensus 376 F~~v~~~I~ 384 (402)
T 1azs_C 376 FNDCRDIIQ 384 (402)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887664
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.89 E-value=9.5e-24 Score=160.17 Aligned_cols=152 Identities=19% Similarity=0.234 Sum_probs=101.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--Cccccc---------------------------ccceeEEEEEEEEEecCcE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------EPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 61 (173)
.+.++|+++|.+++|||||+++|+.. .+.... ....|.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45799999999999999999998753 222110 0012334333333444566
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh-----cCCC-CEEEEEeCCCCcccc--
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENI-PIVLCGNKVDVKNRQ-- 133 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~-p~ivv~nK~Dl~~~~-- 133 (173)
..+.+|||||+++|...+..++..+|++++|+|+++ .+++....|..+..+. ..+. |+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 789999999999999889999999999999999998 5555333222222111 0244 689999999997621
Q ss_pred ------ccHHHHHHHHHcC-----CcEEEEccCCCCChHHH
Q 030686 134 ------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (173)
Q Consensus 134 ------~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 163 (173)
...+..+++...+ ++++++||++|.|+.++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1223345555554 67999999999999754
No 162
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=2.1e-22 Score=153.06 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=99.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEE--EEEecCcEEEEEEEeCCCcccccCcc----------
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLR---------- 79 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~~~~~~~---------- 79 (173)
..++|+++|++|+|||||++++++.... ...+..|++.... .+..++ ..+.+|||+|..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHHH
Confidence 4589999999999999999998765432 1233444444333 333343 368899999975433221
Q ss_pred --hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-cH-HHH-HHHH----HcCCcEE
Q 030686 80 --DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KA-KQV-TFHR----KKNLQYY 150 (173)
Q Consensus 80 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~-~~~-~~~~----~~~~~~~ 150 (173)
..+++.+|++++|+|++++.+.+.. .+...+.. .+.|+++|+||+|+.+... .. +.. .+.. ...++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2356789999999999976554432 22233333 3889999999999875322 11 111 2222 2357899
Q ss_pred EEccCCCCChHHHHHHHHHHh
Q 030686 151 EISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~~i 171 (173)
++||++|.|++++|+.+.+.+
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999988654
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=2.2e-22 Score=152.71 Aligned_cols=150 Identities=20% Similarity=0.222 Sum_probs=101.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCc--ccc----------cccc-------------------eeEEEEEEEEEecC
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK----------YEPT-------------------IGVEVHPLDFFTNC 59 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~ 59 (173)
...+||+++|.+++|||||+++|+.+.. ... ...+ .|.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3458999999999999999999875431 100 0011 12222222223344
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCC-CEEEEEeCCCCcccc-----
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQ----- 133 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~----- 133 (173)
....+.+|||||+++|...+..++..+|++++|+|++++...+ ...++..+... +. |+++|+||+|+.+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence 5678999999999999888888999999999999999864322 23333333332 44 599999999997621
Q ss_pred -ccHHHHHHHHHcC-----CcEEEEccCCCCChHHH
Q 030686 134 -VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (173)
Q Consensus 134 -~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 163 (173)
...+..+++...+ ++++++||++|.|+.++
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1223335556666 67999999999999873
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.88 E-value=3.7e-22 Score=155.88 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=104.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccc----cccceeEEEEEEEE------------EecCcEEEEEEEeCCCccc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDF------------FTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~~~D~~G~~~ 74 (173)
.+..+|+++|++++|||||+++++....... ..++.+........ ........+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3568999999999999999999876543221 11233322221110 0001122589999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCC---hhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--------------cH-
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KA- 136 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~- 136 (173)
|...+..+++.+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+..... ..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 99999999999999999999998 44444332 2333 3899999999999864211 00
Q ss_pred ----------HHHHHHHHc---------------CCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 137 ----------KQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 137 ----------~~~~~~~~~---------------~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+......+. ..+++++||++|.|++++++++...+
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 011111111 23789999999999999999998653
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=7.7e-22 Score=146.25 Aligned_cols=154 Identities=17% Similarity=0.074 Sum_probs=100.5
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHhhCCcccccccceeEE--EEEEEEEecCcEEEEEEEeCCCccc---------ccCcch
Q 030686 13 SFK-LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRD 80 (173)
Q Consensus 13 ~~~-i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~ 80 (173)
.++ |+++|++|+|||||++++.+...... ...+.+ .....+.+++ ..+.+|||+|.-. ++.. .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-L 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-H
Confidence 355 99999999999999999876654221 111222 2223344444 5789999999622 2222 2
Q ss_pred hhccCCCEEEEEEECCChh--hhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccH---HHHHHHHHc---CCcEEE
Q 030686 81 GYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYE 151 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~---~~~~~~ 151 (173)
..+..+|++++|+|++++. ....+..|...+.... .+.|+++|+||+|+.+..... ....++... +..+++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 2467899999999999876 4555555555554432 578999999999987543111 111233443 346899
Q ss_pred EccCCCCChHHHHHHHHHHh
Q 030686 152 ISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i 171 (173)
+||+++.|+++++++|.+.+
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHh
Confidence 99999999999999998765
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.88 E-value=1.6e-23 Score=160.22 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=105.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+..+|+++|++++|||||+++|....+.....+ |++.......+......+.+|||||++.|..++..++..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~--GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG--GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC--CCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCC--CeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 467999999999999999999876544322222 222221112222234578999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc---cHHHH---HHHHHc--CCcEEEEccCCCCChHHH
Q 030686 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQV---TFHRKK--NLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~---~~~~~~--~~~~~~~S~~~~~~i~~~ 163 (173)
|+|++++...+.... +..+.. .++|+++++||+|+.+... ..+.. .+...+ .++++++||++|.|++++
T Consensus 81 VVda~~g~~~qT~e~-l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 81 VVAADDGVMPQTIEA-IQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp EEETTTBSCTTTHHH-HHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred EeecccCccHHHHHH-HHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 999988543333222 223322 3889999999999975321 11110 011222 268999999999999999
Q ss_pred HHHHHH
Q 030686 164 FLYLAR 169 (173)
Q Consensus 164 ~~~i~~ 169 (173)
++++..
T Consensus 158 le~I~~ 163 (501)
T 1zo1_I 158 LDAILL 163 (501)
T ss_dssp HHHTTT
T ss_pred hhhhhh
Confidence 999864
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.88 E-value=4.8e-22 Score=147.68 Aligned_cols=142 Identities=7% Similarity=-0.032 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
+|+++|.+++|||||+++|+ ..|.+.......+......+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999977 12233222223344455679999999999998877888899999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhcCCCCE-EEEEe-CCCCccccccH----HHHHHHHHc---CCcEEE--EccCC---CCCh
Q 030686 95 VTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQVKA----KQVTFHRKK---NLQYYE--ISAKS---NYNF 160 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~----~~~~~~~~~---~~~~~~--~S~~~---~~~i 160 (173)
+.. .......++..+... ++|. ++++| |+|+ +..... +..+++... .+++++ +||++ +.|+
T Consensus 93 -~~g-~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred -CCC-CcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 543 233344455544443 7787 88999 9999 532211 223344333 368999 99999 9999
Q ss_pred HHHHHHHHHHh
Q 030686 161 EKPFLYLARKL 171 (173)
Q Consensus 161 ~~~~~~i~~~i 171 (173)
+++++.|.+.+
T Consensus 168 ~~L~~~l~~~~ 178 (370)
T 2elf_A 168 DELKARINEVA 178 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999988754
No 168
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.87 E-value=6.6e-23 Score=152.03 Aligned_cols=156 Identities=18% Similarity=0.310 Sum_probs=85.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCC-ccccc--------ccceeEEEEEEEEEecCcEEEEEEEeCCCc-------ccc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-------~~~ 75 (173)
..++|+++|++|+|||||+++|+... +...+ .++.+.+.........+..+.+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 35899999999999999999966543 22222 134444433333344455678999999998 667
Q ss_pred cCcch-------hhccCCCEE-----------EEEEECCC-hhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030686 76 GGLRD-------GYYIHGQCA-----------IIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 76 ~~~~~-------~~~~~~~~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
..++. .|++.++++ +++|++++ ..++..+. .++..+ ..++|+++|+||+|+......
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHH
Confidence 77765 555544332 35555554 44555554 344433 358999999999999763322
Q ss_pred ----HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 136 ----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 136 ----~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+..+++..++++++++||+++.+ .+.|.++.+.+
T Consensus 193 ~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 193 ERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 233456667789999999999998 77777776655
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.87 E-value=4.4e-22 Score=162.68 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=110.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCC-------ccc-------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|.+++|||||+++|.... +.. ....+.|++.......++.....+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3567999999999999999999987531 000 11224455554433445556678999999999999
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc-----cHHHHHHHHHcC---
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN--- 146 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~--- 146 (173)
......++..+|++|+|+|++++...+ ...++..+... ++| +++++||+|+.+... ..+..+++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 888888899999999999999875433 33444444443 788 789999999975221 123345555554
Q ss_pred --CcEEEEccCCC--------CChHHHHHHHHHHh
Q 030686 147 --LQYYEISAKSN--------YNFEKPFLYLARKL 171 (173)
Q Consensus 147 --~~~~~~S~~~~--------~~i~~~~~~i~~~i 171 (173)
++++++||++| .|+.+++++|.+.+
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 46889999887643
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.87 E-value=8.2e-23 Score=156.17 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=89.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh--CCccccc---------------------------ccceeEEEEEEEEEecCcE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKKY---------------------------EPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~--~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 61 (173)
...++|+++|..++|||||+++|+. +.+.... ....|.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 3468999999999999999999864 2221100 0011222222111223345
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hhhcHHHHHHHHhhh-cCCCC-EEEEEeCCCCcccc---
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCRV-CENIP-IVLCGNKVDVKNRQ--- 133 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~p-~ivv~nK~Dl~~~~--- 133 (173)
..+.+|||||+++|...+..++..+|++++|+|++++. +|+...++.+.+... ..++| +++++||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 78999999999999999998999999999999999863 443222222222211 23777 99999999996421
Q ss_pred -----ccHHHHHHHHHc-------CCcEEEEccCCCCChHHHH
Q 030686 134 -----VKAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 134 -----~~~~~~~~~~~~-------~~~~~~~S~~~~~~i~~~~ 164 (173)
...+...++... +++++++||++|.|+.+++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 112233455544 3569999999999998754
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.87 E-value=1.2e-22 Score=154.88 Aligned_cols=150 Identities=15% Similarity=0.176 Sum_probs=101.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--Ccccc---------------------------cccceeEEEEEEEEEecCcE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (173)
.+.++|+++|.+++|||||+++|+.. .+... .....|.+.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45799999999999999999998753 21110 00012333322223344456
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hhh---cHHHHHHHHhhhcCCCC-EEEEEeCCCCcc--c
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKN--R 132 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~--~ 132 (173)
..+.+|||||+++|...+..++..+|++++|+|++++. +|+ .....+..... .++| +++++||+|+.+ .
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCH
Confidence 78999999999999988888999999999999999763 332 12222222222 3666 899999999973 1
Q ss_pred c----ccHHHHHHHHHcC-----CcEEEEccCCCCChHH
Q 030686 133 Q----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (173)
Q Consensus 133 ~----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 162 (173)
. ...+..+++...+ ++++++||++|.|+.+
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 1 1122334445544 6899999999999864
No 172
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.9e-22 Score=157.16 Aligned_cols=153 Identities=21% Similarity=0.189 Sum_probs=101.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccc-----------------------------ccceeEEEEEEEEEecCcE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------EPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (173)
.+.+||+++|.+++|||||+++|+.....-.. ....|++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45799999999999999999998754221000 0012444443333444466
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hhh--cHHHHHHHHhhhcCCCCEEEEEeCCCCccc--cc
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNR--QV 134 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~ 134 (173)
..+.+|||||+++|...+..+++.+|++++|+|++++. ++. ....+...+.......|+++|+||+|+.+. ..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 78999999999999999999999999999999999753 111 111122222222223459999999999762 11
Q ss_pred ----cHHHHHHHHHc-----CCcEEEEccCCCCChHHH
Q 030686 135 ----KAKQVTFHRKK-----NLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 135 ----~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~~ 163 (173)
..+...++... +++++++||++|.|+.++
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11222333333 368999999999999865
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.86 E-value=6.8e-22 Score=143.19 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=100.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccc----cccee----------------------EEEE-------------
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIG----------------------VEVH------------- 51 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~----------------------~~~~------------- 51 (173)
....+|+++|.+|+|||||+++|++..+.+.. ....+ ++..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999998877653211 11111 0000
Q ss_pred ----------EEEEEec-CcEEEEEEEeCCCccc-------------ccCcchhhccCCCEEE-EEEECCChhhhhcHHH
Q 030686 52 ----------PLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAI-IMFDVTARLTYKNVPT 106 (173)
Q Consensus 52 ----------~~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 106 (173)
...+... .....+.+|||||... +...+..+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0011111 1136799999999642 3345666788888776 7999987654444334
Q ss_pred HHHHHhhhcCCCCEEEEEeCCCCccccc-cHHHHHH-HHH--cC-CcEEEEccCCCCChHHHHHHHHH
Q 030686 107 WHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTF-HRK--KN-LQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 107 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~--~~-~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+...+.. .+.|+++|+||+|+.+... ..+..+- ... .+ .+++++||++|.|++++++++.+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 5555543 3789999999999976432 1111110 001 11 35788999999999999999875
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.85 E-value=3.5e-21 Score=148.82 Aligned_cols=128 Identities=17% Similarity=0.172 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCC--ccc------------------ccccceeEEEEEEEEEecCc
Q 030686 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
|.|........+..+|+++|.+++|||||+++|+... ... ......|.+.......+...
T Consensus 1 m~m~~l~~~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~ 80 (529)
T 2h5e_A 1 MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH 80 (529)
T ss_dssp --CCTHHHHHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET
T ss_pred CchhhhhhhhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC
Confidence 4444333223457899999999999999999988531 100 00112233332222333445
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
.+.+.+|||||++.|...+..+++.+|++++|+|++++..... ..++..+.. .++|+++++||+|+..
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI 148 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence 6889999999999999888889999999999999997642221 222333332 3899999999999865
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.85 E-value=4.4e-22 Score=155.75 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=87.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCC--cccc---------------------------cccceeEEEEEEEEEecCcE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (173)
...++|+++|.+++|||||+++|+... .... .....|++.......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 456899999999999999999986321 0000 00122444444444444456
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hh--h-cHHHHHHHHhhhcCCCC-EEEEEeCCCCcc--c
Q 030686 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--K-NVPTWHRDLCRVCENIP-IVLCGNKVDVKN--R 132 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~-~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~--~ 132 (173)
..+.+|||||++.|...+..++..+|++|+|+|++++. ++ . .....+..+.. .++| +++|+||+|+.+ .
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTTCH
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEeccccccccH
Confidence 78999999999999999899999999999999998653 22 1 11222222222 2666 999999999975 1
Q ss_pred cc----cHHHHHHH-HHcCC-----cEEEEccCCCCChH--------------HHHHHHHH
Q 030686 133 QV----KAKQVTFH-RKKNL-----QYYEISAKSNYNFE--------------KPFLYLAR 169 (173)
Q Consensus 133 ~~----~~~~~~~~-~~~~~-----~~~~~S~~~~~~i~--------------~~~~~i~~ 169 (173)
.. ..+...+. ...++ +++++||++|.|+. ++++.|.+
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~ 393 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ 393 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence 11 11222333 33343 69999999999998 67777654
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=7.4e-21 Score=131.03 Aligned_cols=154 Identities=14% Similarity=0.011 Sum_probs=94.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc----------cCcchh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLRDG 81 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~ 81 (173)
+..+|+++|++|+|||||++++.+..+.....++.|.+.....+..++ .+.+||+||.... +.....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 457999999999999999999776654444456666655433333332 5789999997431 222223
Q ss_pred hc---cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHHHHHcC--CcEEEE
Q 030686 82 YY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--LQYYEI 152 (173)
Q Consensus 82 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~--~~~~~~ 152 (173)
++ ..++++++++|++++.+.... .....+.. .+.|+++++||+|+..... ......++.... +.++++
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 33 468999999999876543221 11122222 3789999999999865321 122334444443 567899
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030686 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
|++++.|+.++++++.+.+
T Consensus 179 Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHH
Confidence 9999999999999988754
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.84 E-value=2e-20 Score=148.71 Aligned_cols=127 Identities=20% Similarity=0.158 Sum_probs=85.9
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhC--Ccccc--------cc------cceeEEEEEEEEEecCcEEEE
Q 030686 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK--------YE------PTIGVEVHPLDFFTNCGKIRF 64 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~--------~~------~~~~~~~~~~~~~~~~~~~~~ 64 (173)
|++.... ...+..+|+++|.+|+|||||+++|+.. ..... .. ...+.+.......+....+.+
T Consensus 1 M~~~l~~-~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i 79 (691)
T 1dar_A 1 MAVKVEY-DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRI 79 (691)
T ss_dssp CCTTCCC-CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEE
T ss_pred CCccccC-ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEE
Confidence 5544333 2345789999999999999999998732 11000 00 011222222222222345789
Q ss_pred EEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 65 ~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
.+|||||+..+...+..+++.+|++++|+|+++..+.+....|.. +... ++|+++|+||+|+..
T Consensus 80 ~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 80 NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKTG 143 (691)
T ss_dssp EEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTT
T ss_pred EEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCccc
Confidence 999999999999899999999999999999998876665554543 3333 899999999999865
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.84 E-value=2e-20 Score=148.23 Aligned_cols=116 Identities=19% Similarity=0.148 Sum_probs=82.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCccccccc----------------ceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
+..+|+++|+.|+|||||+++++.......... ..+.+.......+....+.+.+|||||++.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 457899999999999999999874322100000 1122332233333335688999999999999
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030686 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
...+..+++.+|++++|+|+++....+. ..++..+... ++|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc--cCCEEEEecCCchh
Confidence 8888999999999999999887643322 2344444443 89999999999987
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=6.9e-20 Score=130.51 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=83.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhcc------
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI------ 84 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------ 84 (173)
.+.++|+++|.+|+|||||++++++...... .+..+.+..............+.+|||||++.+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV-SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC-CSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4689999999999999999999887664221 222333333333333335568999999999888766655554
Q ss_pred ---CCCEEEEEEECCChhhhhcH-HHHHHHHhhhcC---CCCEEEEEeCCCCcc
Q 030686 85 ---HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (173)
Q Consensus 85 ---~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 131 (173)
.+|++++|++++... +... ..|+..+..... ..|+++|+||+|+..
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999998654 4433 356777766542 348999999999853
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.82 E-value=1.5e-19 Score=135.68 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcc-cccc-cceeEEEEEEEEEecCcEEEEEEEeCCCccc----ccCcchhh---ccC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGY---YIH 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~ 85 (173)
.|+++|++|+|||||++++...... ..+. .+...+.. .+..++ ...+.+||+||... +..+...+ +..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G--~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG--VVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE--EEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee--EEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 4899999999999999997654321 0111 11111111 122222 35789999999743 22333333 346
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
++.+++++|++ ...+..+..+..++.... .+.|.++++||+|+..........+.+...+.+++.+||++++|+++
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 89999999998 555666666666655442 36899999999999876322233345555678999999999999999
Q ss_pred HHHHHHHHhh
Q 030686 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
++++|.+.+.
T Consensus 315 L~~~i~~~l~ 324 (416)
T 1udx_A 315 LKEALHALVR 324 (416)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.82 E-value=1.9e-20 Score=135.73 Aligned_cols=158 Identities=19% Similarity=0.284 Sum_probs=83.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC-Cccccc--------ccceeEEEEEEEEEecCcEEEEEEEeCCCc-------cc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-------~~ 74 (173)
.-.++|+++|++|+|||||++++.+. .++... .++.+...........+....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999997654 333322 112211111122222344578999999998 55
Q ss_pred ccCcch-------hhccC-------------CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 75 FGGLRD-------GYYIH-------------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 75 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
+..+.. .++++ +++++++.+.+. .+++.... ..+.....+.|+++|+||+|+.....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 555544 44332 234555554332 23443331 33333335789999999999875321
Q ss_pred ----cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 135 ----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 135 ----~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
..+..+++..+++.++++||+++ |++++|+++.+.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 23445778888999999999999 99999999988764
No 182
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.82 E-value=8.5e-21 Score=137.63 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=107.8
Q ss_pred HHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh-hhhcHH
Q 030686 28 TFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVP 105 (173)
Q Consensus 28 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 105 (173)
+|+.++..+.+. ..+.||+|..+. ..... .. .+.+||+ +++++.+++.+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~--~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDE--TG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCC--SS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcC--CC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577788888887 788899995443 33222 22 7899999 8999999999999999999999999987 678888
Q ss_pred HHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcC--CcEEEEccCCCCChHHHHHHHHH
Q 030686 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 106 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.|+..+.. .++|+++|+||+|+.+....++..+++..++ +.++++||++|.|++++|+.+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 89887765 4899999999999976432233456666666 89999999999999999988653
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.81 E-value=1.2e-19 Score=129.85 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=83.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchh-------h-
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-------Y- 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~-------~- 82 (173)
...++|+++|.+|+|||||+++|++..... ...+.+++..............+.+|||||.+.+...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 457999999999999999999988766422 1233344444444444445678999999998876543332 1
Q ss_pred -ccCCCEEEEEEECCChhhhhcH-HHHHHHHhhhcC-C--CCEEEEEeCCCCcc
Q 030686 83 -YIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE-N--IPIVLCGNKVDVKN 131 (173)
Q Consensus 83 -~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~--~p~ivv~nK~Dl~~ 131 (173)
.+.+|++++|+|++.. ++... ..|+..+...+. + .|+++|+||+|+..
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 3479999999998753 34433 356777765543 2 69999999999864
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.81 E-value=4.1e-19 Score=141.34 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=82.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh--CCcccc--------ccc------ceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YEP------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~--~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
.+..+|+++|.+|+|||||+++|+. +..... ... ..+++.......+....+.+.+|||||+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4578999999999999999999874 222100 000 112222222222222457899999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
+...+..+++.+|++++|+|++++.+.+....|. .+... ++|+++|+||+|+..
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~--~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY--GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT--TCCEEEEEECTTSTT
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc--CCCEEEEEECCCccc
Confidence 9888899999999999999999876655554443 34443 899999999999865
No 185
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.81 E-value=3.4e-19 Score=141.82 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=75.4
Q ss_pred EEEEEeCCCccc---ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc---ccH
Q 030686 63 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKA 136 (173)
Q Consensus 63 ~~~~~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~ 136 (173)
.+.+|||||... ....+..+++.+|++++|+|++++.+......|...+... +.|+++|+||+|+.... ...
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECcccccccccChhh
Confidence 589999999654 3345667889999999999999876665554454444332 77899999999986542 000
Q ss_pred ---------HHHH-----HHHH--------cCCcEEEEccC--------------CCCChHHHHHHHHHHh
Q 030686 137 ---------KQVT-----FHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKL 171 (173)
Q Consensus 137 ---------~~~~-----~~~~--------~~~~~~~~S~~--------------~~~~i~~~~~~i~~~i 171 (173)
.... +... ....++++||+ ++.|++++++++.+.+
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 0111 1111 12468999999 9999999999988755
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.81 E-value=1.1e-18 Score=138.97 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=82.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--Ccccc-----------cc---cceeEEEEEE--EEEe-----cCcEEEEEEE
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK-----------YE---PTIGVEVHPL--DFFT-----NCGKIRFYCW 67 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~-----------~~---~~~~~~~~~~--~~~~-----~~~~~~~~~~ 67 (173)
.+..+|+++|..++|||||+++|+.. ..... +. ...+.+.... .+.. ++..+.+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999998642 11110 00 0112222221 2221 2234899999
Q ss_pred eCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 68 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
||||+..|...+..+++.+|++++|+|+++..+.+....| ..... .++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH--cCCCEEEEEeCCCccc
Confidence 9999999988899999999999999999987654444333 33333 3899999999999864
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=4.7e-19 Score=129.22 Aligned_cols=106 Identities=9% Similarity=0.091 Sum_probs=68.3
Q ss_pred EEEEEEeCCCccc-------------ccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030686 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 62 ~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
..+.+|||||... +...+..++..+|++++|+|.++.. .......+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 5799999999753 3345666788999999999975432 11222233334433 378999999999
Q ss_pred CCccccccHHHHHHHHH----cCCcEEEEccCC------CCChHHHHHHHHHHh
Q 030686 128 DVKNRQVKAKQVTFHRK----KNLQYYEISAKS------NYNFEKPFLYLARKL 171 (173)
Q Consensus 128 Dl~~~~~~~~~~~~~~~----~~~~~~~~S~~~------~~~i~~~~~~i~~~i 171 (173)
|+.+.... ..+.... .+..++++++.+ +.|+.++++.+.+.+
T Consensus 209 Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 209 DLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred ccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 99764321 1222222 225677776654 688899988876643
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.79 E-value=1.5e-19 Score=135.28 Aligned_cols=85 Identities=26% Similarity=0.327 Sum_probs=47.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccc-cc-----ccceeEEEEEEEE---------------EecC-cEEEEEEEeCCC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLDF---------------FTNC-GKIRFYCWDTAG 71 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~-----~~~~~~~~~~~~~---------------~~~~-~~~~~~~~D~~G 71 (173)
++|+++|.+|+|||||+|++....... .+ .+..|........ ..++ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999987665211 11 1122211110000 0111 247899999999
Q ss_pred ccc----ccCcch---hhccCCCEEEEEEECCCh
Q 030686 72 QEK----FGGLRD---GYYIHGQCAIIMFDVTAR 98 (173)
Q Consensus 72 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 98 (173)
... ++.+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222333 346899999999999874
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=131.91 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=80.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccc--------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-----
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----- 77 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----- 77 (173)
.-.++|+++|++|+|||||++.|++..+.... .++.+...........+....+++||++|...+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34588999999999999999998766542111 12222111111112223345799999999765321
Q ss_pred --------------------cchhhccCCCEEEEEEECCCh-hhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-c
Q 030686 78 --------------------LRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-V 134 (173)
Q Consensus 78 --------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~ 134 (173)
+.+.++.++++.+++|+.... .++.... .|+..+. .++|+++|+||+|+.... .
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHH
Confidence 223455566655555555443 3455444 4666654 378999999999986532 2
Q ss_pred c---HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 135 K---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 135 ~---~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
. ....+.+..+++.++++|+.++.++.+++..+...+
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2 234466777899999999999999999888776643
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=3.8e-19 Score=132.03 Aligned_cols=152 Identities=12% Similarity=0.117 Sum_probs=96.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccccccccee---EE----------------------------------------
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VE---------------------------------------- 49 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~---~~---------------------------------------- 49 (173)
-.+|+|+|.+|+|||||++++.+..+.+....... +.
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34999999999999999999887665322221110 00
Q ss_pred ---------EEEEEEEe-cCcEEEEEEEeCCCcccc-------------cCcchhhccCCCEEEEEEECCChhhhhcHHH
Q 030686 50 ---------VHPLDFFT-NCGKIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPT 106 (173)
Q Consensus 50 ---------~~~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 106 (173)
.......+ ......+.+|||||...+ ..+...|+.++|++++|+|..+..... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 00001111 112346899999998776 455677899999999999876543222 23
Q ss_pred HHHHHhhhc-CCCCEEEEEeCCCCccccc-cHH-HHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030686 107 WHRDLCRVC-ENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 107 ~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|+..+.... .+.|+++|+||+|+.+... ..+ ........+..|+++++.++.++++.+..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 333333332 3789999999999876432 222 12233445688999999998887765433
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.75 E-value=1.2e-17 Score=129.63 Aligned_cols=117 Identities=16% Similarity=0.138 Sum_probs=83.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC--Ccc------------------cccccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFE------------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
+.-+|+|+|..++|||||.++|+.. ... .......|++.......+....+.+.++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 3578999999999999999998631 100 00011223333333334444668899999999
Q ss_pred cccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
+..|..-....++-+|++++|+|+.+.-..+...-| ....++ ++|.++++||+|...
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~--~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR--ATPVMTFVNKMDREA 166 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT--TCCEEEEEECTTSCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh--CCceEEEEecccchh
Confidence 999999999999999999999999987655554445 444444 999999999999764
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.75 E-value=3.6e-19 Score=131.83 Aligned_cols=155 Identities=12% Similarity=0.108 Sum_probs=92.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccc----cceeE----------------------EE--------------
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE----PTIGV----------------------EV-------------- 50 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~----------------------~~-------------- 50 (173)
....+|+++|.+|+|||||+|+|++..+.+... ...+. ++
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999988766532111 11110 00
Q ss_pred ---------EEEEEEec-CcEEEEEEEeCCCccc-------------ccCcchhhccCCC-EEEEEEECCChhhhhcHHH
Q 030686 51 ---------HPLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQ-CAIIMFDVTARLTYKNVPT 106 (173)
Q Consensus 51 ---------~~~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~ 106 (173)
....+.+. .....+.+|||||... +..+...|+..++ ++++|.+++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 00011111 1235799999999642 2334556666665 5555666654322222222
Q ss_pred HHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHH------cC-CcEEEEccCCCCChHHHHHHHHH
Q 030686 107 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 107 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~-~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+...+.. .+.|+++|+||+|+.+..... ...... .+ ..++++||+++.|+.++++++.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~--~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCCC--HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcchhH--HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3344433 378999999999997643211 111111 12 24678999999999999998865
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.75 E-value=3.4e-18 Score=126.63 Aligned_cols=101 Identities=8% Similarity=-0.013 Sum_probs=70.1
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-H
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V 139 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~ 139 (173)
.+.+.+|||||... ........+|++++|+|....+..+.+... ....|+++|+||+|+.+....... .
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 47899999999543 233445889999999998866544333211 124588999999999754322211 1
Q ss_pred HHHHH----------cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 140 TFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 140 ~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
++... ++.+++++||++|.|+++++++|.+.+
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 22111 257899999999999999999998764
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.74 E-value=6e-18 Score=117.38 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=91.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEE--------------EEEEEEe----------------cCcEE
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--------------HPLDFFT----------------NCGKI 62 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~~ 62 (173)
..+|+++|.+|+|||||+++|+..............+. ....... .....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 46899999999999999999875421111011110000 0011111 11235
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--ccHHHHH
Q 030686 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVT 140 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~ 140 (173)
.+.+|||+|+.... ..+....+.+++|+|+++... ....+... . +.|+++|+||+|+.+.. ...+..+
T Consensus 110 d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~~~~ 179 (221)
T 2wsm_A 110 DLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F--RVADLIVINKVALAEAVGADVEKMKA 179 (221)
T ss_dssp SEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H--HTCSEEEEECGGGHHHHTCCHHHHHH
T ss_pred CEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h--hcCCEEEEecccCCcchhhHHHHHHH
Confidence 78899999851100 111135788999999876532 11111111 1 57889999999997532 2233334
Q ss_pred HHHHc--CCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 141 FHRKK--NLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 141 ~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
.+... ..+++++||++|.|+.++++++.+.+.
T Consensus 180 ~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 180 DAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 44443 478999999999999999999988653
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.73 E-value=1.1e-17 Score=135.50 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=85.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCC--ccc----------------ccccceeEEEEEEEEE------------ecCc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK----------------KYEPTIGVEVHPLDFF------------TNCG 60 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~------------~~~~ 60 (173)
.+..||+++|..++|||||+++|+... ... ....|+........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 346899999999999999999987531 100 0001221111122222 1334
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
.+.+.+|||||+..|...+..+++.+|++++|+|++++.+.+....|.... . .++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H--cCCCeEEEEECCCcch
Confidence 789999999999999999999999999999999999987777655554333 2 3889999999999863
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=6.7e-16 Score=113.81 Aligned_cols=82 Identities=21% Similarity=0.098 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccccccc--ceeEEEEEEEEEecCc---------------EEEEEEEeCCCccccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFG 76 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~ 76 (173)
++|+++|.+|+|||||++++..........| |.+.+.. .+.+++. ...+.+|||||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 7899999999999999999887653221111 2222221 1222221 1579999999987653
Q ss_pred ----Ccch---hhccCCCEEEEEEECCC
Q 030686 77 ----GLRD---GYYIHGQCAIIMFDVTA 97 (173)
Q Consensus 77 ----~~~~---~~~~~~~~~i~v~d~~~ 97 (173)
.+.. .+++++|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2322 34789999999999985
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=121.01 Aligned_cols=102 Identities=9% Similarity=-0.019 Sum_probs=62.9
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-HH
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQ 138 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~ 138 (173)
..+.+.++||+|.... .......+|++++|+|++.+...+.+.. .+ -..|.++|+||+|+.+..... ..
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~ 234 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQ 234 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHH
Confidence 3467899999996421 2345678999999999987643222211 11 256889999999996532111 11
Q ss_pred HHHHH----------HcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 139 VTFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 139 ~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
..+.. .+..+++++||++|.|+++++++|.+.+
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 11111 1245789999999999999999998753
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.69 E-value=3e-17 Score=127.52 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=78.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCc-----------------------E------
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCG-----------------------K------ 61 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------------~------ 61 (173)
...+|+|+|.+|+|||||+|+|++..... .......++... .+..... +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE-EEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE-EEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 46899999999999999999998776531 111111111100 0000000 0
Q ss_pred -----------EEEEEEeCCCccc-----------ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC
Q 030686 62 -----------IRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP 119 (173)
Q Consensus 62 -----------~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p 119 (173)
..+.+|||||... +...+..++..+|++++|+|+++.........++..+... +.|
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~p 220 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDK 220 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCC
Confidence 2588999999764 3345566788999999999998754444455566666543 678
Q ss_pred EEEEEeCCCCcccc
Q 030686 120 IVLCGNKVDVKNRQ 133 (173)
Q Consensus 120 ~ivv~nK~Dl~~~~ 133 (173)
+++|+||+|+....
T Consensus 221 vilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 221 IRVVLNKADMVETQ 234 (550)
T ss_dssp EEEEEECGGGSCHH
T ss_pred EEEEEECCCccCHH
Confidence 99999999997643
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.69 E-value=1.4e-18 Score=120.95 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=87.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEE------------EEEEEec-Cc------------------
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH------------PLDFFTN-CG------------------ 60 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 60 (173)
+..+|+++|.+|+|||||+++|+...+...+.++.+.+.. ......+ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999998876544433444443322 1111111 10
Q ss_pred -EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--ccHH
Q 030686 61 -KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAK 137 (173)
Q Consensus 61 -~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~ 137 (173)
...+.++|++|.-.. ...+-...+..+.+.|......... ..... . +.|.++|+||+|+.+.. ...+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~ 186 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M--KTADLIVINKIDLADAVGADIKK 186 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H--TTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH---h--hcCCEEEEeccccCchhHHHHHH
Confidence 114555666652100 0011122345566676532211111 00111 1 56889999999997642 2333
Q ss_pred HHHHHHHc--CCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 138 QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 138 ~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
..+++... +++++++||++|.|++++|+++.+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 44455543 67899999999999999999998765
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.64 E-value=2.2e-16 Score=116.29 Aligned_cols=101 Identities=12% Similarity=-0.018 Sum_probs=64.9
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH---
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 137 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--- 137 (173)
.+.+.+|||||...... .....+|++++|+|++.....+.+.. .. .+.|.++|+||+|+.+......
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh----hcccCEEEEECCCCCChHHHHHHHH
Confidence 46899999999654332 24688999999999986544332221 11 1457899999999976422111
Q ss_pred -HHHHHHHc-------CCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 138 -QVTFHRKK-------NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 138 -~~~~~~~~-------~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
........ ..+++++||++|.|+++++++|.+.+
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11111121 45789999999999999999998754
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.64 E-value=4e-17 Score=128.96 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CCcccc-----------c---ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------Y---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~--~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
.||+|+|+.++|||||.++|+. +..... + ....|++.......+...++.+.++|||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 5789999999999999999863 221110 0 00113444433444455667899999999999999
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
.....++-+|++++|+|+.+.-..+...-| ....+. ++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~--~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM--GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH--TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc--CCCeEEEEecccccc
Confidence 999999999999999999987544443333 444444 889999999999754
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.63 E-value=1.4e-15 Score=107.98 Aligned_cols=110 Identities=14% Similarity=0.008 Sum_probs=67.5
Q ss_pred EEEEEEEeCCCcccccCcch------hhccCCCEEEEEEECCChhhhhcHHHHHHHH-h-hhcCCCCEEEEEeCCCCccc
Q 030686 61 KIRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-C-RVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~-~-~~~~~~p~ivv~nK~Dl~~~ 132 (173)
.+.+.+|||||......... ..+.. +++++++|.....+........... . ....+.|+++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 35899999999875433221 13455 8888899876432222221111111 1 11237899999999998753
Q ss_pred cccHHHHH----------------------------HHHHcC--CcEEEEccCCCCChHHHHHHHHHHh
Q 030686 133 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 133 ~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
....+..+ ++...+ .+++++||+++.|++++++++.+.+
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 31111111 122333 4799999999999999999998764
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.63 E-value=8.7e-15 Score=116.99 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=79.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCC--------ccc--------ccccceeEEEEE--EEEEec-----CcEEEEEEEe
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--------FEK--------KYEPTIGVEVHP--LDFFTN-----CGKIRFYCWD 68 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~--------~~~--------~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~D 68 (173)
+-.+|+|+|+.++|||||.++|+... ... ......|++... ..+... ...+.+.++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 34689999999999999999987321 000 001111233322 222222 2368999999
Q ss_pred CCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 69 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
||||-.|..-....++-+|++++|+|+...-..+...-|... .+. ++|.++++||+|...
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH--TCCEEEEEECSSSTT
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc--CCCeEEEEccccccC
Confidence 999999999889999999999999999987554444444333 343 899999999999753
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.61 E-value=9.4e-15 Score=108.23 Aligned_cols=80 Identities=18% Similarity=0.122 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcc-c-----ccccceeEEEEEEEEEe------------c-----CcEEEEEEEeCC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-K-----KYEPTIGVEVHPLDFFT------------N-----CGKIRFYCWDTA 70 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~-~-----~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~D~~ 70 (173)
++|+++|.+|+|||||++++...... . ...++.|.. .+.. . .....+.+||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~----~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtp 77 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV----PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIA 77 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE----ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE----ecChHHHHHHHHHhcccccccccCCceEEEEECC
Confidence 68999999999999999998764321 1 122333321 1100 0 023579999999
Q ss_pred Cccccc----Ccch---hhccCCCEEEEEEECCC
Q 030686 71 GQEKFG----GLRD---GYYIHGQCAIIMFDVTA 97 (173)
Q Consensus 71 G~~~~~----~~~~---~~~~~~~~~i~v~d~~~ 97 (173)
|..++. .+.. ..++.+|++++|+|+++
T Consensus 78 Gl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 78 GLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 987653 2322 24789999999999985
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.58 E-value=5.9e-15 Score=117.56 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=95.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc--c-------------------------------------------
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--T------------------------------------------- 45 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~------------------------------------------- 45 (173)
....+|+|+|.+++|||||+|++++..+-+.... |
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3456999999999999999999887654211100 0
Q ss_pred ----eeEEEEEEEEEec-CcEEEEEEEeCCCcccc-------------cCcchhhc-cCCCEEEEEEECCChhhhhcHHH
Q 030686 46 ----IGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-------------GGLRDGYY-IHGQCAIIMFDVTARLTYKNVPT 106 (173)
Q Consensus 46 ----~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 106 (173)
.+.+...+...+. .....+.++||||.... ..+...|+ ..+|++++|+|++......+...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0000011111111 11235789999996541 11223344 47899999999987543333323
Q ss_pred HHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHH------cC-CcEEEEccCCCCChHHHHHHHHH
Q 030686 107 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 107 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~-~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
++..+... +.|+++|+||+|+.+...... ..... .+ ..++++||++|.|++++++.+.+
T Consensus 209 ll~~L~~~--g~pvIlVlNKiDlv~~~~~~~--~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVDPQ--GQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHCTT--CSSEEEEEECTTSSCTTCCSH--HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHhc--CCCEEEEEeCcccCCcchhhH--HHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 44455443 789999999999976433221 11111 11 24678999999999999998876
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.6e-14 Score=105.16 Aligned_cols=116 Identities=12% Similarity=-0.016 Sum_probs=76.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC----c---chhhccC
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----L---RDGYYIH 85 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~---~~~~~~~ 85 (173)
..+|+++|.||+|||||+|+|.+.. .. .....++|..+....+......++++||||.-.... . ....++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~-v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SE-AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CC-GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-Cc-ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 3689999999999999999976544 22 233444555555544444567899999999643221 1 1224678
Q ss_pred CCEEEEEEECCChhhh-hcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030686 86 GQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
+|++++|+|++++... +.+...+..........|.++++||.|..
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 9999999999987432 22333333332233467888999999964
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.56 E-value=1.9e-14 Score=104.35 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=79.5
Q ss_pred cccccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc---cHHHHHHHHHcCC
Q 030686 72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL 147 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~ 147 (173)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... ..+..+++...++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 6788888899999999999999999886 88888888887765 4899999999999976431 2334456667789
Q ss_pred cEEEEccCCCCChHHHHHHHHH
Q 030686 148 QYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 148 ~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+++++||++|.|++++++.+..
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHhhccC
Confidence 9999999999999999987643
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.55 E-value=7.2e-15 Score=99.59 Aligned_cols=102 Identities=6% Similarity=-0.088 Sum_probs=69.2
Q ss_pred CCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHH----hhh--cCCCCEEEEEeCC-CCccccccHHHHHH
Q 030686 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL----CRV--CENIPIVLCGNKV-DVKNRQVKAKQVTF 141 (173)
Q Consensus 69 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~----~~~--~~~~p~ivv~nK~-Dl~~~~~~~~~~~~ 141 (173)
.+|+++.+.+|++||.++|++|||+|.+|++..+ .+..+..+ .+. ..+.|++|++||. |++......+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 4589999999999999999999999999986544 45444332 222 2578999999995 78765544444332
Q ss_pred HH----HcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 142 HR----KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 142 ~~----~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.. .....+..|||.+|+|+.|.++||.+.+
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 21 1234578999999999999999998765
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=97.73 Aligned_cols=103 Identities=6% Similarity=-0.122 Sum_probs=74.7
Q ss_pred CCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHH----HHhhh--cCCCCEEEEEeC-CCCccccccHHHHHH
Q 030686 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR----DLCRV--CENIPIVLCGNK-VDVKNRQVKAKQVTF 141 (173)
Q Consensus 69 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~----~~~~~--~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 141 (173)
.+||++.+.+|++|+.++|++|||+|.+|++.++ .+..+. .+.+. ..+.|++|++|| .|++......+..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 5689999999999999999999999999987654 333332 23222 268999999996 688775544444332
Q ss_pred HHH----cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030686 142 HRK----KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 142 ~~~----~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
... ....+..|||.+|+|+.|.++|+.+.+.
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 211 2345789999999999999999998763
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.45 E-value=5.5e-14 Score=103.31 Aligned_cols=101 Identities=8% Similarity=0.020 Sum_probs=61.3
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHH-
Q 030686 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK- 137 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~- 137 (173)
..+.+.++||+|..... ......+|.+++++|....+..+.+...+ . ..|.++++||+|+.. ......
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h----ccccEEEEEchhccCchhHHHHH
Confidence 35689999999975321 23457899999999987543221111111 1 235577789999743 221111
Q ss_pred HHHHHHH----------cCCcEEEEccCCCCChHHHHHHHHHH
Q 030686 138 QVTFHRK----------KNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 138 ~~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
...+... +..+++.+|++++.|++++++.|.+.
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1122111 14578999999999999999998764
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.36 E-value=7e-13 Score=98.73 Aligned_cols=88 Identities=16% Similarity=0.005 Sum_probs=48.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCc---------------EEEEEEEeCCCccccc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFG 76 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~ 76 (173)
..++|+++|.+|+|||||++++.+........|....+.....+.+.+. ...+.+||+||..++.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3579999999999999999998766442221121111111122222221 2359999999987654
Q ss_pred C-------cchhhccCCCEEEEEEECCChh
Q 030686 77 G-------LRDGYYIHGQCAIIMFDVTARL 99 (173)
Q Consensus 77 ~-------~~~~~~~~~~~~i~v~d~~~~~ 99 (173)
. .+..+++++|++++|+|+.+.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 3456688999999999998543
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.31 E-value=1.1e-10 Score=87.08 Aligned_cols=85 Identities=15% Similarity=0.064 Sum_probs=52.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCc-ccccccceeEEEEEEEEEecCc---------------EEEEEEEeCCCccccc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFG 76 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~ 76 (173)
..+++++|++|+|||||+|.+.+... .....|....+...-.+.+.+. ...+.+||+||.....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 47899999999999999999887543 2221221111111112222221 1368999999954322
Q ss_pred -------CcchhhccCCCEEEEEEECCC
Q 030686 77 -------GLRDGYYIHGQCAIIMFDVTA 97 (173)
Q Consensus 77 -------~~~~~~~~~~~~~i~v~d~~~ 97 (173)
......++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 123345678999999999864
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.21 E-value=1e-12 Score=97.70 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC----cccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGE----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDG 81 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~ 81 (173)
.+++++|.+|+|||||+|+++... .........|+|.....+..+.. +.++||||....... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 579999999999999999987641 11122333445555555544432 789999996432211 111
Q ss_pred hc--cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHH-HHHHcCCcEEEEccCCCC
Q 030686 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~ 158 (173)
++ ...+.++++++....-....+.. +..+.. .+.|+++++||.|...........+ +.+..+..+.+.++....
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~ 316 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYAA 316 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGGTT
T ss_pred HhcccccCceEEEEcCCceEEECCEEE-EEEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchhhh
Confidence 22 56799999998843211011100 111111 3679999999999877555454443 444556555555555444
Q ss_pred Ch
Q 030686 159 NF 160 (173)
Q Consensus 159 ~i 160 (173)
++
T Consensus 317 ~~ 318 (369)
T 3ec1_A 317 EF 318 (369)
T ss_dssp TC
T ss_pred hc
Confidence 44
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.21 E-value=1.8e-11 Score=90.90 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=73.5
Q ss_pred CcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-HHH----HHHHHc
Q 030686 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHRKK 145 (173)
Q Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~----~~~~~~ 145 (173)
..++|+.....+.+.++++++|+|++++. ..|...+.+...+.|+++|+||+|+.+..... ... ..+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 45778888999999999999999999864 34556666666689999999999997644322 222 335566
Q ss_pred CC---cEEEEccCCCCChHHHHHHHHHH
Q 030686 146 NL---QYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 146 ~~---~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
+. .++.+||++|.|++++++.+.+.
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 76 78999999999999999998653
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.20 E-value=5.9e-13 Score=98.90 Aligned_cols=135 Identities=11% Similarity=0.042 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc-----ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc----chh---
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEF-----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----RDG--- 81 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----~~~--- 81 (173)
.+++++|.+|+|||||+|+++.... ........|+|.....+..... +.++||||....... ...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 5799999999999999999876421 1223455566666655554433 789999996433211 111
Q ss_pred -h--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHH-HHHcCCcEEEEcc
Q 030686 82 -Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF-HRKKNLQYYEISA 154 (173)
Q Consensus 82 -~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~S~ 154 (173)
+ ....+.++++++....-....+.. +..+.. .+.|+++++||.|...........++ .+..+..+.+.++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSCH
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE-EEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCCccCCCch
Confidence 1 246788888888742211011100 111111 36799999999998876555544443 3344444444443
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.12 E-value=1.7e-10 Score=82.70 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=69.2
Q ss_pred EEeCCCcc-cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHH
Q 030686 66 CWDTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK 144 (173)
Q Consensus 66 ~~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 144 (173)
+...||+. +........+..+|+++.|+|+.++.+.... .+.+...++|.++|+||+|+.+....+...++...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~ 77 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFEN 77 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHT
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHh
Confidence 34578875 3444556678899999999999998766531 12222258999999999999874332222344555
Q ss_pred cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030686 145 KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 145 ~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+.+++.+||+++.|+.++++.+.+.+
T Consensus 78 ~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 78 QGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp TTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred cCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 678999999999999999998876643
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.10 E-value=6.5e-11 Score=87.98 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=71.4
Q ss_pred CcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-HHH----HHHHHc
Q 030686 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHRKK 145 (173)
Q Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~----~~~~~~ 145 (173)
.+++|+.....++..++++++|+|++++.+ .|...+.+...+.|+++|+||+|+.+..... ... ..+...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence 478888889999999999999999998763 3344444445689999999999997653322 222 234555
Q ss_pred CC---cEEEEccCCCCChHHHHHHHHHH
Q 030686 146 NL---QYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 146 ~~---~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
+. .++.+||++|.|++++++.+.+.
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 66 68999999999999999998654
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.05 E-value=5e-10 Score=84.17 Aligned_cols=137 Identities=17% Similarity=0.222 Sum_probs=69.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccc--cccceeEEEEEEEEEecC--cEEEEEEEeCCCcccccC-----------
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGG----------- 77 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~G~~~~~~----------- 77 (173)
.++++|+|++|+|||||++.+.+-..... .....+.....+.+.... ....++++|++|......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 35799999999999999999765432211 111122223333332222 224789999998543211
Q ss_pred ---cchh-------------hccCC--CE-EEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccccccHH
Q 030686 78 ---LRDG-------------YYIHG--QC-AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK 137 (173)
Q Consensus 78 ---~~~~-------------~~~~~--~~-~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 137 (173)
.+.. .+..+ |+ ++++.|...+- .... ..+..+ ..+.|+++|+||+|.........
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l--~~~Dieilk~L---~~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL--KSLDLVTMKKL---DSKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHT---CSCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC--CHHHHHHHHHH---hhCCCEEEEEcchhccchHHHHH
Confidence 0001 11122 33 44455554332 2222 222222 24889999999999765332222
Q ss_pred HH----HHHHHcCCcEEEEcc
Q 030686 138 QV----TFHRKKNLQYYEISA 154 (173)
Q Consensus 138 ~~----~~~~~~~~~~~~~S~ 154 (173)
.. +.....+++++.+|.
T Consensus 197 l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHcCCcEEecCC
Confidence 22 223345677777764
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.05 E-value=2.8e-10 Score=87.44 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=84.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh------CCcc----cccccc-----------eeEEEEEEEEE-------------e
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT------GEFE----KKYEPT-----------IGVEVHPLDFF-------------T 57 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~------~~~~----~~~~~~-----------~~~~~~~~~~~-------------~ 57 (173)
+...|+++|.+|+||||+++.|.. .+.. ..+.+. .+......... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999772 2110 000000 01111110000 0
Q ss_pred cCcEEEEEEEeCCCccccc-Ccchh---h--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCE-EEEEeCCCCc
Q 030686 58 NCGKIRFYCWDTAGQEKFG-GLRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVK 130 (173)
Q Consensus 58 ~~~~~~~~~~D~~G~~~~~-~~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~ 130 (173)
....+.+.++||||..... .++.. + ...+|.+++|+|+..... .......+.+ .+|+ .+|+||+|..
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~---~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD---KVDVASVIVTKLDGH 253 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH---HHCCCCEEEECTTSC
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh---hcCceEEEEeCCccc
Confidence 0135689999999975322 11111 1 227899999999987532 2222233333 2564 7889999987
Q ss_pred cccccHHHHHHHHHcCCcE------------------EEEccCCCCC-hHHHHHHHHH
Q 030686 131 NRQVKAKQVTFHRKKNLQY------------------YEISAKSNYN-FEKPFLYLAR 169 (173)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-i~~~~~~i~~ 169 (173)
.+... ........+.++ +.+|+..|.| +.++++++.+
T Consensus 254 ~~~g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 254 AKGGG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp CCCTH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred cchHH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 54321 222333333332 3478889999 9999988764
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.03 E-value=1e-09 Score=78.19 Aligned_cols=115 Identities=19% Similarity=0.314 Sum_probs=60.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccc------ccee-EEEEEEEEEecCc--EEEEEEEeCCCcccccC---cc-
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE------PTIG-VEVHPLDFFTNCG--KIRFYCWDTAGQEKFGG---LR- 79 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~------~~~~-~~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~---~~- 79 (173)
.++++++|++|+|||||++.+.+-..+.... +... .....+.+..... ...++++|++|...... .+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999976532221100 0000 0011122222222 23678999998432110 00
Q ss_pred ------------------------hhhccCCCEEEEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030686 80 ------------------------DGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 80 ------------------------~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
+..+..+++.++++|.... .+... ...+..+.+ .+++++|++|+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh---cCcEEEEEeccccCC
Confidence 1112346888888886522 11222 223334433 489999999999765
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.96 E-value=1.8e-08 Score=75.69 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=81.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccce-eEE--EEEEEEEecCcEEEEEEEeCCCcccccCcchhh-----cc
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-GVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----YI 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~-----~~ 84 (173)
...++++|++|+|||||+|.+.+-..+....-+. +.. ....... ......+++||++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999977633222111111 111 1111111 1111257899999864322222222 23
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc--c-------ccccHHH----HHHH----HHc--
Q 030686 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N-------RQVKAKQ----VTFH----RKK-- 145 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~-------~~~~~~~----~~~~----~~~-- 145 (173)
..+..++ ++...... +. ......+... +.|+++|.||.|+. + .....+. .++. .+.
T Consensus 148 ~~~~~~~-lS~G~~~k-qr-v~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK-ND-IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp GCSEEEE-EESSCCCH-HH-HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCeEE-eCCCCccH-HH-HHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455554 77652111 11 1122333332 78999999999963 1 1111111 2222 122
Q ss_pred -CCcEEEEcc--CCCCChHHHHHHHHHHh
Q 030686 146 -NLQYYEISA--KSNYNFEKPFLYLARKL 171 (173)
Q Consensus 146 -~~~~~~~S~--~~~~~i~~~~~~i~~~i 171 (173)
....+.+|+ ..+.|++++.+.+.+.+
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 236788999 56667999999987654
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.77 E-value=8.5e-09 Score=73.91 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=35.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
...++++++|.+|+|||||+|++.+... .......|+|.....+..+ ..+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVG---KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEET---TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeEEEEeC---CCEEEEECcCcCC
Confidence 3468999999999999999999775542 2334455555544333332 2578999999753
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.72 E-value=5.4e-09 Score=74.15 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
++++++|.+|+|||||+|++.+.... ...++.|++.....+..+ ..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLE---NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeC---CCEEEEECCCcccC
Confidence 69999999999999999997765542 334555655544333322 25789999997643
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.72 E-value=6.9e-09 Score=73.61 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=62.7
Q ss_pred CCCccc-ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC
Q 030686 69 TAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (173)
Q Consensus 69 ~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (173)
.||+.. ........+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+........++....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~ 76 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S-RKETIILLNKVDIADEKTTKKWVEFFKKQGK 76 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence 467653 2234556778999999999999887654311 11 1 1 7899999999999875332233344555677
Q ss_pred cEEEEccCCCCChHHHHHHHHH
Q 030686 148 QYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 148 ~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
++ .+||+++.|++++++.+.+
T Consensus 77 ~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 77 RV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp CE-EECCTTSCHHHHHHHHCCC
T ss_pred eE-EEECCCCcCHHHHHHHHHH
Confidence 88 9999999999999887643
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.62 E-value=3.1e-07 Score=69.42 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=54.8
Q ss_pred EEEEEEeCCCcccccC-cch-----hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030686 62 IRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
+.+.++||+|...... ... .....+|.+++|+|+.... ........+.+. -.+..+|+||.|...+..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~--~~i~gVIlTKlD~~~~gG- 256 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEA--TPIGSIIVTKLDGSAKGG- 256 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHS--CTTEEEEEECCSSCSSHH-
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhh--CCCeEEEEECCCCccccc-
Confidence 7899999999532211 111 1123578999999998643 223333344332 234568899999875432
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 136 AKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
.........+.++..++. |++++
T Consensus 257 -~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 257 -GALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp -HHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred -HHHHHHHHHCCCEEEEEc--CCChH
Confidence 233455567888877765 66554
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.58 E-value=4.3e-08 Score=70.88 Aligned_cols=90 Identities=13% Similarity=0.064 Sum_probs=63.0
Q ss_pred ccCcchhhccCCCEEEEEEECCChhh-hhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHHHHHcCCcE
Q 030686 75 FGGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQY 149 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~ 149 (173)
...+.+..+.++|.+++|+|+.+|.. ...+..++..... .++|.++|+||+|+.+... ..+........+.+.
T Consensus 76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 34455667889999999999997653 2333333333322 4889999999999987543 223334555668899
Q ss_pred EEEccCCCCChHHHHHH
Q 030686 150 YEISAKSNYNFEKPFLY 166 (173)
Q Consensus 150 ~~~S~~~~~~i~~~~~~ 166 (173)
+.+|+.++.|++++++.
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999998877653
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.58 E-value=2.2e-08 Score=75.79 Aligned_cols=85 Identities=16% Similarity=0.063 Sum_probs=49.3
Q ss_pred cEEEEEEEeCCCcccccC-cch-----hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCC-C-EEEEEeCCCCcc
Q 030686 60 GKIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKN 131 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~ 131 (173)
..+.+.++||||...... +.. ..+..+|.+++|+|+.... +.......+ .+.. | ..+|+||+|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~---~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF---KEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH---HTTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH---hhcccCCeEEEEeCCCCcc
Confidence 346789999999653211 111 1122689999999987553 222222222 2345 6 788999999864
Q ss_pred ccccHHHHHHHHHcCCcEEEE
Q 030686 132 RQVKAKQVTFHRKKNLQYYEI 152 (173)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ 152 (173)
+.. .........+.++..+
T Consensus 253 ~~g--~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 KGG--GALSAVAETKAPIKFI 271 (432)
T ss_dssp TTH--HHHHHHHHSSCCEEEE
T ss_pred chH--HHHHHHHHHCCCEEEe
Confidence 321 2334555566665544
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.44 E-value=3e-07 Score=71.98 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=39.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc-ceeEEEEEEEE--Ee-cCcEEEEEEEeCCCccc
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVEVHPLDF--FT-NCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~D~~G~~~ 74 (173)
+.+.++|+|+|.+|+|||||+|+|++....-.... +.+.+...+.. .. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 34568899999999999999999876542111111 11222222211 11 12345789999999653
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.41 E-value=6.1e-07 Score=64.70 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=57.0
Q ss_pred cEEEEEEEeCCCccc--cc-Ccch-----hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCc
Q 030686 60 GKIRFYCWDTAGQEK--FG-GLRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK 130 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~--~~-~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 130 (173)
..+.+.++||||... .. .+.. .....+|.+++|+|+... .........+.. ..| ..+|+||.|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCC
Confidence 346799999999765 21 1111 123468999999998643 233222333332 456 67889999976
Q ss_pred cccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030686 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
.+. ..........+.++..++ .|+++++
T Consensus 253 ~~~--g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 AKG--GGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp TTH--HHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred cch--HHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 432 123456667788887776 5666543
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.36 E-value=9.2e-07 Score=66.81 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCccc--ccC-cchh-----hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030686 61 KIRFYCWDTAGQEK--FGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 61 ~~~~~~~D~~G~~~--~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
.+.+.++||||... ... .... .....+.+++|+|+..... .......+.+. -.+..+|+||.|...+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc--cCCcEEEEeccccccc
Confidence 56788999999543 111 1111 1124689999999986532 22333444433 3457888999998753
Q ss_pred cccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
.. .........+.++..++. |++++
T Consensus 254 ~G--~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 254 GG--GALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp HH--HHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred ch--HHHHHHHHHCCCEEEEEC--CCChH
Confidence 32 234555567888877775 66653
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.35 E-value=2.3e-06 Score=63.11 Aligned_cols=83 Identities=10% Similarity=0.068 Sum_probs=56.0
Q ss_pred hccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHHHHHHcCCcEEEEccCCC
Q 030686 82 YYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~S~~~~ 157 (173)
...++|.+++|... +|. +...+..++...... ++|.++|+||+|+.+..... +........+++++.+|+.++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 36789999988665 453 333333444333333 78889999999998754311 122344456889999999999
Q ss_pred CChHHHHHHH
Q 030686 158 YNFEKPFLYL 167 (173)
Q Consensus 158 ~~i~~~~~~i 167 (173)
.|++++...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999887654
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.29 E-value=2.8e-08 Score=76.14 Aligned_cols=114 Identities=13% Similarity=-0.047 Sum_probs=63.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc--ccCcc--------h
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLR--------D 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~--------~ 80 (173)
....+|+++|.+|+||||+.++|..... ....++.+...........+......+||..|.+. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999764322 11122222111110011111223346788888732 23333 4
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030686 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.++....+.++|+|.++.. ......|...+.+. ..+++++-..++
T Consensus 116 ~~l~~~~G~~vV~D~tn~~-~~~R~~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT-RERRAMIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS-HHHHHHHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHHhCCCCEEEEeCCCCC-HHHHHHHHHHHHhc--CCcEEEEEEECC
Confidence 5666678889999999873 34445566655554 444544443333
No 233
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.14 E-value=6.9e-06 Score=64.83 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++|+|+.|||||||++.+.+-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999997654
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.09 E-value=2.6e-05 Score=57.00 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=52.4
Q ss_pred EEEEEEeCCCcccccCc-chhh-----ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030686 62 IRFYCWDTAGQEKFGGL-RDGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~-~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
+.+.++|++|....... .... .-..|-.+++.|.... +.+......+.+.. + .-.+++||.|...+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~-~-it~iilTKlD~~a~~-- 284 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV-K-IDGIILTKLDADARG-- 284 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS-C-CCEEEEECGGGCSCC--
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc-C-CCEEEEeCcCCccch--
Confidence 45667999996433221 1111 1246888999997654 23333344444321 2 236778999974432
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 136 AKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
-.........+.++..++ +|++++
T Consensus 285 G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 285 GAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp HHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred hHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 224466677788888776 666654
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.84 E-value=0.00012 Score=55.50 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=46.7
Q ss_pred EEEEEEEeCCCcccccC-cch-----hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccc
Q 030686 61 KIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ 133 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 133 (173)
.+.+.++||||...... ... ......+.+++|+|+... .........+.. ..+ .-+|+||.|...+.
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g---~~~~~~~~~f~~---~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG---QDAANTAKAFNE---ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC---TTHHHHHHHHHH---HSCCCCEEEECTTSSSCC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh---HHHHHHHHHHhc---cCCCeEEEEecCCCCccH
Confidence 56899999999643321 111 123468899999998754 223333333332 344 34678999986443
Q ss_pred ccHHHHHHHHHcCCcEEE
Q 030686 134 VKAKQVTFHRKKNLQYYE 151 (173)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (173)
. .........+.++..
T Consensus 257 g--~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 257 G--AALSIRHITGKPIKF 272 (433)
T ss_dssp T--HHHHHHHHHCCCEEE
T ss_pred H--HHHHHHHHHCCCeEE
Confidence 1 233444455555433
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.84 E-value=7.1e-06 Score=55.57 Aligned_cols=84 Identities=7% Similarity=-0.064 Sum_probs=54.7
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh---cCCCCEEEEEeCCCCccccccHH
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK 137 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~ 137 (173)
.+.+.++|+|+.. .......+..+|.++++...+... ..+...++.+.+. .++.++.+|+|+.|.... ...+
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~ 149 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNV 149 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHH
Confidence 4788999999765 344556677899999999877544 5555555555443 346788999999996443 2223
Q ss_pred HHHHHHHcCCcE
Q 030686 138 QVTFHRKKNLQY 149 (173)
Q Consensus 138 ~~~~~~~~~~~~ 149 (173)
..+.....+.++
T Consensus 150 ~~~~l~~~~~~v 161 (206)
T 4dzz_A 150 LKESIKDTGVKA 161 (206)
T ss_dssp HHHHHHHHTCCB
T ss_pred HHHHHHHcCCce
Confidence 344444444443
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.84 E-value=3.4e-06 Score=56.62 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|+|+||+|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999997644
No 238
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.81 E-value=3.2e-05 Score=58.69 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+-.-|.|+|++++|||+|+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456789999999999999999875
No 239
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.69 E-value=6.5e-05 Score=51.25 Aligned_cols=85 Identities=11% Similarity=-0.024 Sum_probs=55.0
Q ss_pred cEEEEEEEeCCCc-ccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHH
Q 030686 60 GKIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK 137 (173)
Q Consensus 60 ~~~~~~~~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~ 137 (173)
..+.+.++|+|+. .. ......+..+|.++++...+ ..+...+...++.+.... +.++.+|+|+.|... .. ..+
T Consensus 66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~-~~~ 140 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKD-GDE 140 (209)
T ss_dssp GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCH-HHH
T ss_pred hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchH-HHH
Confidence 3478999999876 32 34455677899999998865 455566666666665532 567889999998764 22 223
Q ss_pred HHHHHHHcCCcE
Q 030686 138 QVTFHRKKNLQY 149 (173)
Q Consensus 138 ~~~~~~~~~~~~ 149 (173)
..+..++.+.++
T Consensus 141 ~~~~l~~~g~~v 152 (209)
T 3cwq_A 141 ARQLLTTAGLPL 152 (209)
T ss_dssp HHHHHHHTTCCB
T ss_pred HHHHHHHcCCch
Confidence 334444455443
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.65 E-value=3.3e-05 Score=51.44 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+++++|++|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998654
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.58 E-value=2.2e-05 Score=53.15 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
+.--|+++|++|+|||||++.|+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999997643
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.54 E-value=5e-05 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998764
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=6.6e-05 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++|||||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999765
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.53 E-value=7.8e-05 Score=56.26 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=48.7
Q ss_pred cEEEEEEEeCCCcccccC-cch-----hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccc
Q 030686 60 GKIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 132 (173)
..+.+.++||||...... ... .....++.+++|+|+... ++.......+.. ..+ ..+|+||.|...+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~---~l~i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDE---KVGVTGLVLTKLDGDAR 252 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHH---HTCCCEEEEESGGGCSS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHh---cCCceEEEEeCcCCccc
Confidence 346789999998643211 111 112258889999998643 223233333333 233 4567899997543
Q ss_pred cccHHHHHHHHHcCCcEEEEc
Q 030686 133 QVKAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S 153 (173)
.. .........+.++..+.
T Consensus 253 ~g--~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 253 GG--AALSARHVTGKPIYFAG 271 (425)
T ss_dssp CH--HHHHHHHHHCCCEEEEE
T ss_pred HH--HHHHHHHHHCCCEEEEe
Confidence 22 23445566677766654
No 245
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.52 E-value=9.2e-05 Score=54.63 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
.++++|++|+|||||+|.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999977543
No 246
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.49 E-value=2.3e-05 Score=56.69 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
-.++++|++|+|||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999996643
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.46 E-value=7.2e-05 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
-.++++|++||||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999996543
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.45 E-value=7.6e-05 Score=49.88 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|++|+||||+++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999764
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.45 E-value=7.8e-05 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999986643
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.41 E-value=0.00031 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999977
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.41 E-value=7.7e-05 Score=49.21 Aligned_cols=20 Identities=45% Similarity=0.989 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030686 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999643
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.40 E-value=0.00012 Score=49.77 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+...|+|+|++|||||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998553
No 253
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.38 E-value=0.0001 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 35889999999999999996653
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.37 E-value=0.0001 Score=50.57 Aligned_cols=21 Identities=48% Similarity=0.770 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|++|+|||||++.+.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998665
No 255
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.37 E-value=0.00011 Score=50.01 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998654
No 256
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.36 E-value=0.00017 Score=48.70 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+.....|+++|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999998653
No 257
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.35 E-value=0.00021 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~ 34 (173)
+...|++.|.+||||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999998865
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.34 E-value=0.00011 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|++||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.33 E-value=0.00013 Score=49.44 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-|+++|++||||||+++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999764
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.32 E-value=0.00019 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
--|+++|++||||||+++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999997654
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.31 E-value=0.00014 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|++||||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998654
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.29 E-value=0.00017 Score=47.22 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.29 E-value=0.00017 Score=47.24 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 030686 14 FKLVIVGDGGTGKTTFVKRH 33 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l 33 (173)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999997
No 264
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.29 E-value=0.00018 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
.-.|+++|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999866
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.28 E-value=0.00019 Score=47.27 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999765
No 266
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.28 E-value=0.00017 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998643
No 267
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.28 E-value=0.00018 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 268
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.28 E-value=0.00027 Score=47.05 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=21.8
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...+...|+++|.+|+||||+++.+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 334557899999999999999998653
No 269
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.27 E-value=0.00027 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.|+++|++||||||+.+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998653
No 270
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.26 E-value=0.00018 Score=49.05 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998643
No 271
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.26 E-value=0.0002 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+++|+.|||||||++.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998654
No 272
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.26 E-value=0.00021 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~ 37 (173)
..|+++|++||||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999976543
No 273
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.26 E-value=0.00017 Score=48.10 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999753
No 274
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.26 E-value=0.00016 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|||||||++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999998543
No 275
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.24 E-value=0.00019 Score=48.48 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|+++|++||||||+++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653
No 276
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.24 E-value=0.00023 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998653
No 277
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.24 E-value=0.0002 Score=46.69 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999876543
No 278
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.22 E-value=0.00027 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|+++|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999865
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.22 E-value=0.00027 Score=46.60 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999654
No 280
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.22 E-value=0.00027 Score=47.55 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=22.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC
Q 030686 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
+.+...|+|+|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999987654
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.21 E-value=0.00029 Score=47.71 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998653
No 282
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.20 E-value=0.0002 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998543
No 283
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.18 E-value=0.00025 Score=48.27 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
++|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998653
No 284
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.18 E-value=0.00033 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
..+|+++|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999986543
No 285
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.18 E-value=0.00025 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998765
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.18 E-value=0.00026 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|+++|++||||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
No 287
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.17 E-value=0.00031 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+..+|+++|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998753
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.17 E-value=0.0003 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998653
No 289
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.17 E-value=0.00025 Score=49.47 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998554
No 290
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.16 E-value=0.00028 Score=47.47 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998653
No 291
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.16 E-value=0.00028 Score=48.40 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|++||||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998654
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.16 E-value=0.00027 Score=47.04 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998653
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.14 E-value=0.00027 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
=.++|+|++|+|||||++.+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999865
No 294
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.14 E-value=0.00026 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999998654
No 295
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.14 E-value=0.00028 Score=49.12 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998554
No 296
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.14 E-value=0.00027 Score=48.44 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998553
No 297
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.14 E-value=0.00026 Score=50.42 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|||||||++.+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999998554
No 298
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.14 E-value=0.00028 Score=48.09 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998654
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.13 E-value=0.00031 Score=46.59 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998653
No 300
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.13 E-value=0.00027 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
=.++++|++||||||+++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999998664
No 301
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.13 E-value=0.00027 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998553
No 302
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.13 E-value=0.011 Score=42.39 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=52.6
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEE-EEEeCCCCccccccHH
Q 030686 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV-LCGNKVDVKNRQVKAK 137 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i-vv~nK~Dl~~~~~~~~ 137 (173)
.+.+.++|+|+.-.. ......+..+|.++++...+ ..+...+...+..+... ..+.+++ +|+|+.+.. ..
T Consensus 156 ~yD~ViiD~p~~~~~-~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 156 DTDVVIFDVLGDVVC-GGFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SCSEEEEEECCSSCC-GGGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred cCCEEEEeCCCccch-HHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 478899999875322 12234567899999998754 55666666666666553 2456654 889999842 22
Q ss_pred HHHHHHHcCCcEE
Q 030686 138 QVTFHRKKNLQYY 150 (173)
Q Consensus 138 ~~~~~~~~~~~~~ 150 (173)
..++....+.+++
T Consensus 229 ~~~~~~~~g~~v~ 241 (307)
T 3end_A 229 VDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCCce
Confidence 3445555565554
No 303
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.12 E-value=0.00029 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.|+++|++|+||||+.+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998653
No 304
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.12 E-value=0.00031 Score=49.05 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998554
No 305
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.12 E-value=0.00035 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998754
No 306
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.11 E-value=0.00027 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998554
No 307
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.11 E-value=0.00031 Score=49.20 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998554
No 308
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.11 E-value=0.00028 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998553
No 309
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.10 E-value=0.00034 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998554
No 310
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.10 E-value=0.00038 Score=47.66 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998653
No 311
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.09 E-value=0.00034 Score=46.33 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.-++++|++|+|||||+++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999997643
No 312
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.09 E-value=0.00031 Score=49.65 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 478999999999999998553
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.08 E-value=0.00063 Score=49.30 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=20.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+..-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3457799999999999999998654
No 314
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.08 E-value=0.00032 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998554
No 315
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.07 E-value=0.00034 Score=49.30 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998554
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.07 E-value=0.00035 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998654
No 317
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.07 E-value=0.0003 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++|+|||||++.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
No 318
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.07 E-value=0.0003 Score=48.00 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999986654
No 319
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.06 E-value=0.00034 Score=49.06 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999998543
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.06 E-value=0.00035 Score=48.54 Aligned_cols=20 Identities=40% Similarity=0.782 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030686 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999866
No 321
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.06 E-value=0.00047 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
...|++.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999996643
No 322
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.06 E-value=0.00037 Score=49.18 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998554
No 323
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.06 E-value=0.00039 Score=47.85 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
..|++.|.+||||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999865
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.06 E-value=0.00035 Score=45.99 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998653
No 325
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.05 E-value=0.00058 Score=46.22 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+++|++|+||||+++.|..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998654
No 326
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.04 E-value=0.00038 Score=49.34 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998654
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.04 E-value=0.0005 Score=45.43 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|+++|++|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4578999999999999999865
No 328
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.04 E-value=0.00045 Score=45.04 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998654
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.04 E-value=0.00047 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|++.|.+||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999865
No 330
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.04 E-value=0.00048 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...-|++.|++||||||+++.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999753
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.03 E-value=0.00028 Score=46.67 Aligned_cols=22 Identities=32% Similarity=0.185 Sum_probs=15.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|++.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999865
No 332
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.03 E-value=0.00042 Score=49.45 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999998554
No 333
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.03 E-value=0.00041 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|+.|+|||||++.+.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998554
No 334
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.02 E-value=0.00038 Score=47.69 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999765
No 335
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.02 E-value=0.0002 Score=47.34 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|++|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
No 336
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.01 E-value=0.0004 Score=48.85 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998554
No 337
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.01 E-value=0.00023 Score=49.18 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030686 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
-++++|++||||||+++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999976
No 338
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.01 E-value=0.0006 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998653
No 339
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.01 E-value=0.00055 Score=47.72 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+|+|+.|||||||++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998654
No 340
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.00 E-value=0.00038 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999966543
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.00 E-value=0.00044 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 342
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.00 E-value=0.00097 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999865
No 343
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.00 E-value=0.00053 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998653
No 344
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.99 E-value=0.00042 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999998554
No 345
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.99 E-value=0.00076 Score=48.37 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
.+...|+|+|++|||||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999998754
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.98 E-value=0.00039 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-+++|+|++|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998654
No 347
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.98 E-value=0.00051 Score=47.19 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998653
No 348
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.97 E-value=0.00065 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|+|+|++||||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999866
No 349
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.96 E-value=0.00052 Score=48.52 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999985543
No 350
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.96 E-value=0.0006 Score=47.73 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+.+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998654
No 351
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.96 E-value=0.0018 Score=49.13 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=38.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh------------------CCcc---cccccceeEEEEEEEEEe---cCcEEEEEEE
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT------------------GEFE---KKYEPTIGVEVHPLDFFT---NCGKIRFYCW 67 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~------------------~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 67 (173)
+-.=|.|+|+.++|||+|+|.++. ..|. .....|.|+-.....+.. ++....+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 345677999999999999996541 1221 111224444333222212 4567889999
Q ss_pred eCCCccc
Q 030686 68 DTAGQEK 74 (173)
Q Consensus 68 D~~G~~~ 74 (173)
||.|...
T Consensus 146 DTEG~~d 152 (457)
T 4ido_A 146 DTQGTFD 152 (457)
T ss_dssp EECCBTC
T ss_pred eccCCCC
Confidence 9999543
No 352
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.94 E-value=0.00047 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998653
No 353
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.94 E-value=0.00052 Score=48.18 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998653
No 354
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.94 E-value=0.00067 Score=46.91 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...+|+++|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998653
No 355
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.92 E-value=0.00035 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|++|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 589999999999999998553
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.91 E-value=0.00063 Score=45.30 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.91 E-value=0.001 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
...+-|+++|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999998764
No 358
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.90 E-value=0.00052 Score=43.87 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
...|++.|++|+|||++++.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999986543
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.88 E-value=0.00094 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.88 E-value=0.00089 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+...|+++|++|+||||+++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998653
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.88 E-value=0.0007 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998654
No 362
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.87 E-value=0.0006 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|++||||||+++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998654
No 363
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.87 E-value=0.00073 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
....|+++|++||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998653
No 364
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.87 E-value=0.00074 Score=45.13 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998653
No 365
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.86 E-value=0.00064 Score=48.32 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999654
No 366
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.86 E-value=0.00067 Score=48.66 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998554
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.84 E-value=0.00075 Score=44.13 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.84 E-value=0.001 Score=48.12 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+...|+|+|++|||||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998654
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.84 E-value=0.00079 Score=44.34 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999764
No 370
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.84 E-value=0.00026 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998653
No 371
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.84 E-value=0.0012 Score=45.32 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|+++|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988653
No 372
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.83 E-value=0.00084 Score=44.28 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998654
No 373
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.83 E-value=0.00084 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
+..+.|++.|++|+||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999865
No 374
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.83 E-value=0.00051 Score=44.24 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++|+|||+|++.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998654
No 375
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.83 E-value=0.00076 Score=44.69 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988653
No 376
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.82 E-value=0.0009 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653
No 377
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.82 E-value=0.00095 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.81 E-value=0.001 Score=43.87 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998654
No 379
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.81 E-value=0.001 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998754
No 380
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.80 E-value=0.00073 Score=49.89 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 378999999999999998554
No 381
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.80 E-value=0.00072 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999986643
No 382
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.80 E-value=0.00078 Score=49.83 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 378999999999999998554
No 383
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.80 E-value=0.0008 Score=47.03 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|++|+|||||++.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998654
No 384
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.79 E-value=0.00072 Score=50.02 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
-.++++|++|+|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999996643
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.79 E-value=0.00081 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++||||||+++.+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998664
No 386
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.79 E-value=0.0012 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.....|+++|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999998654
No 387
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.77 E-value=0.00083 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 378999999999999998554
No 388
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.77 E-value=0.00083 Score=48.50 Aligned_cols=85 Identities=9% Similarity=0.026 Sum_probs=46.9
Q ss_pred EEEEEEeCCCcccccC------------cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030686 62 IRFYCWDTAGQEKFGG------------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (173)
..+.+.|++|...... +.+......+.++++.|+..... +...+..+.+.. +. .++++||.|.
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-~~-t~iivTh~d~ 259 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-GL-TGVIVTKLDG 259 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH-CC-SEEEEECTTS
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-CC-cEEEEECCcc
Confidence 3456889998532211 11122345677888999876532 233333443321 23 3566899987
Q ss_pred ccccccHHHHHHHHHcCCcEEEEc
Q 030686 130 KNRQVKAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S 153 (173)
..+.. .........+.++..+.
T Consensus 260 ~a~gg--~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TAKGG--VLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SCCCT--THHHHHHHHCCCEEEEE
T ss_pred ccccc--HHHHHHHHHCCCeEEEe
Confidence 54322 23455666777776664
No 389
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.002 Score=47.08 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
+++.|++|+||||+++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998654
No 390
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.74 E-value=0.0009 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 378999999999999998654
No 391
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.73 E-value=0.00093 Score=49.71 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 378999999999999998554
No 392
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.73 E-value=0.00094 Score=49.39 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 378999999999999998654
No 393
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.72 E-value=0.00096 Score=48.14 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
--++++|+.|+||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
No 394
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.71 E-value=0.001 Score=45.54 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998764
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.70 E-value=0.0011 Score=43.87 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030686 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
-.+|+|+.|+|||||++.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999864
No 396
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.70 E-value=0.00095 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++|+|++||||||+++.+++
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999764
No 397
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.70 E-value=0.001 Score=49.37 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 478999999999999998654
No 398
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.69 E-value=0.001 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHc
Confidence 378999999999999998554
No 399
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.65 E-value=0.0015 Score=45.04 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..-|++.|+.||||||+++.+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999998654
No 400
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.64 E-value=0.0012 Score=46.86 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|++|+|||||++.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999998654
No 401
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.63 E-value=0.0011 Score=51.24 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++||||||+++.+++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999664
No 402
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.61 E-value=0.0012 Score=48.17 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998654
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.61 E-value=0.0012 Score=46.27 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|+++|++|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998653
No 404
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.60 E-value=0.0011 Score=43.66 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||+++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988654
No 405
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.59 E-value=0.00086 Score=49.34 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCccHHHHHHHHHc
Confidence 478999999999999998654
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.59 E-value=0.0019 Score=43.87 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|+++|.+|+||||+.+.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999854
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.59 E-value=0.0022 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+..-|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998653
No 408
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.59 E-value=0.0013 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999986643
No 409
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.58 E-value=0.0014 Score=45.87 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+++.|++|+|||++++.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4599999999999999998653
No 410
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.58 E-value=0.0014 Score=44.47 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999776
No 411
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.58 E-value=0.0015 Score=44.77 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.+++.|++|+|||+++..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998653
No 412
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.57 E-value=0.0014 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999764
No 413
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.55 E-value=0.0014 Score=48.98 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 489999999999999998654
No 414
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.53 E-value=0.0016 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999997763
No 415
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.53 E-value=0.0011 Score=48.08 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++|+|+.|||||||++.+++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678899999999999998754
No 416
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0014 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++|+|+.|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999986543
No 417
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.50 E-value=0.0019 Score=41.55 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030686 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
.+|+|+.|+|||||++++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4788999999999999864
No 418
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.50 E-value=0.0016 Score=48.09 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.--++++|+.|+||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999998654
No 419
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.49 E-value=0.002 Score=43.30 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988654
No 420
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.48 E-value=0.002 Score=44.52 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=19.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...+++.++|++||||||+..+|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988654
No 421
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0057 Score=42.12 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=42.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEE-eCCCc-c----cccCcch-hhcc
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW-DTAGQ-E----KFGGLRD-GYYI 84 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~G~-~----~~~~~~~-~~~~ 84 (173)
+++=|+.-|+++.||+.|++++..... ...... ..++..-......+-+| |.--. . .|.+--. ....
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~~~-~~~~i~-----k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~ 101 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHCSS-TGISIV-----KDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRN 101 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCCCC-CSSCEE-----EEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHH
T ss_pred CceEEEecCcccccHHHHHHHHhcccc-cccccc-----cCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHH
Confidence 334444449999999999999665431 111111 12222323344555554 43211 1 1111111 1112
Q ss_pred CCCEEEEEEECCChhhhhcHH
Q 030686 85 HGQCAIIMFDVTARLTYKNVP 105 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~ 105 (173)
...++|+|++...++..+.+.
T Consensus 102 viggII~~f~~p~~~~~~~i~ 122 (233)
T 3uc9_A 102 VMAGIILITDIRQTKPQELLH 122 (233)
T ss_dssp TEEEEEEEECHHHHCGGGTHH
T ss_pred hcceEEEEEeCCCcchHHHHH
Confidence 347889999866555444443
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.47 E-value=0.0031 Score=47.53 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..-|+++|.+||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999654
No 423
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.46 E-value=0.00083 Score=49.54 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999998554
No 424
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.43 E-value=0.0019 Score=49.68 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=48.0
Q ss_pred EEEEEEeCCCcccccC-cc------hhhc-----cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030686 62 IRFYCWDTAGQEKFGG-LR------DGYY-----IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~-~~------~~~~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (173)
+.+.++||+|...... +. .... ...+-++++.|++... +.......+.... ++. .+++||.|-
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---~al~~ak~f~~~~-~it-gvIlTKLD~ 450 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---NAVSQAKLFHEAV-GLT-GITLTKLDG 450 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---HHHHHHHHHHHHT-CCS-EEEEECGGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---HHHHHHHHHHhhc-CCC-EEEEEcCCC
Confidence 5678899999542211 10 0111 1246788899977552 2222233343321 333 456899996
Q ss_pred ccccccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030686 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
..+. -....++...+.++..+. +|++++
T Consensus 451 takg--G~~lsi~~~~~~PI~fig--~Ge~vd 478 (503)
T 2yhs_A 451 TAKG--GVIFSVADQFGIPIRYIG--VGERIE 478 (503)
T ss_dssp CSCC--THHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred cccc--cHHHHHHHHHCCCEEEEe--cCCChh
Confidence 4332 234566667777776653 444443
No 425
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.42 E-value=0.0021 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
+++++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999866543
No 426
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.40 E-value=0.0022 Score=42.61 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999997754
No 427
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.39 E-value=0.0027 Score=43.87 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=20.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+...|+++|++|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999988653
No 428
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.37 E-value=0.0028 Score=42.59 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|.+.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998654
No 429
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.35 E-value=0.0033 Score=45.08 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=19.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~ 34 (173)
....+++.|++|+|||++++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998644
No 430
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.33 E-value=0.0023 Score=47.61 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998663
No 431
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.33 E-value=0.0024 Score=43.60 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
No 432
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.32 E-value=0.0023 Score=50.35 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999998554
No 433
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.0025 Score=42.96 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998654
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.30 E-value=0.0024 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45789999999999999998654
No 435
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.29 E-value=0.0027 Score=49.48 Aligned_cols=21 Identities=48% Similarity=0.495 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998654
No 436
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.29 E-value=0.0025 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998764
No 437
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.29 E-value=0.0037 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..-+++.|+||+|||+|++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35677889999999999998653
No 438
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.28 E-value=0.0025 Score=43.31 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|+||+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999888653
No 439
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.28 E-value=0.0028 Score=44.91 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999654
No 440
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.27 E-value=0.0015 Score=46.78 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=16.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998653
No 441
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.25 E-value=0.0036 Score=43.66 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.24 E-value=0.0029 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~ 37 (173)
..|+++|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999976543
No 443
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.24 E-value=0.0029 Score=43.05 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|++|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988654
No 444
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.23 E-value=0.0028 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999998664
No 445
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.22 E-value=0.0029 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998654
No 446
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.21 E-value=0.0023 Score=45.02 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~ 34 (173)
+...|++.|..||||||+++.|.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999854
No 447
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.21 E-value=0.0031 Score=47.88 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999866543
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.20 E-value=0.0028 Score=49.40 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|+.|+|||||++.+.+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998654
No 449
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.20 E-value=0.003 Score=46.78 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030686 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999865
No 450
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.20 E-value=0.0036 Score=49.23 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998654
No 451
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.19 E-value=0.0031 Score=43.53 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877654
No 452
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.18 E-value=0.0049 Score=44.15 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998654
No 453
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.16 E-value=0.0048 Score=44.57 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-|+|+|++|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999999653
No 454
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.16 E-value=0.0052 Score=43.31 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.....+++.|++|+|||+++..+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999998654
No 455
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.14 E-value=0.0024 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998554
No 456
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.13 E-value=0.0026 Score=50.18 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999998554
No 457
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0034 Score=49.58 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 589999999999999998654
No 458
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.09 E-value=0.0035 Score=45.37 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999998654
No 459
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.08 E-value=0.0052 Score=44.68 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998654
No 460
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.06 E-value=0.0038 Score=44.89 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=46.8
Q ss_pred EEEEEEEeCCCcccccC-cc---hhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030686 61 KIRFYCWDTAGQEKFGG-LR---DGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~---~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... .. ...+. ..+..++|+|.+.. ...+..+...+... + ..-++.||.|......
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l--~-~~giVltk~D~~~~~g 256 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSV--P-VNQYIFTKIDETTSLG 256 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSS--C-CCEEEEECTTTCSCCH
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcC--C-CCEEEEeCCCcccchh
Confidence 46789999999654321 11 11222 35778889987643 12233322222211 2 2345679999865322
Q ss_pred cHHHHHHHHHcCCcEEEEc
Q 030686 135 KAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (173)
.....+...+.++..++
T Consensus 257 --~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 257 --SVFNILAESKIGVGFMT 273 (296)
T ss_dssp --HHHHHHHTCSCCCSEEC
T ss_pred --HHHHHHHHHCcCEEEEE
Confidence 44566667777765554
No 461
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.06 E-value=0.0023 Score=50.31 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 589999999999999987443
No 462
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.05 E-value=0.005 Score=40.63 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~ 37 (173)
.-+++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999987643
No 463
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.04 E-value=0.004 Score=45.57 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998654
No 464
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.03 E-value=0.0041 Score=49.18 Aligned_cols=21 Identities=52% Similarity=0.510 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 589999999999999998654
No 465
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.01 E-value=0.0043 Score=44.32 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653
No 466
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.01 E-value=0.003 Score=49.73 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999997543
No 467
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.01 E-value=0.004 Score=45.76 Aligned_cols=22 Identities=45% Similarity=0.516 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||||++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998664
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.99 E-value=0.0041 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999997654
No 469
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.98 E-value=0.0023 Score=40.67 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
..|++.|++|+|||++++.+.
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGC
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 469999999999999998843
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.96 E-value=0.0058 Score=42.30 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999998653
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.96 E-value=0.0049 Score=48.04 Aligned_cols=22 Identities=50% Similarity=0.557 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++|+|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999986653
No 472
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.96 E-value=0.0048 Score=44.57 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCcccccC-cc------hhh-----ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030686 61 KIRFYCWDTAGQEKFGG-LR------DGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~------~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.+.+.++|+||...... +. ... -...+.+++|+|..... +.+. ....+.+. .++ .-+|+||.|
T Consensus 186 ~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~-~a~~~~~~-~~i-~gvVlTk~D 260 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLV-QAKIFKEA-VNV-TGIILTKLD 260 (306)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHH-HHHHHHHH-SCC-CEEEEECGG
T ss_pred CCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHH-HHHHHHhc-CCC-CEEEEeCCC
Confidence 35688999999532111 00 001 12478889999987432 2222 12233332 132 345679999
Q ss_pred CccccccHHHHHHHHHcCCcEEEEcc
Q 030686 129 VKNRQVKAKQVTFHRKKNLQYYEISA 154 (173)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~S~ 154 (173)
...+.. ...+.....+.++..+..
T Consensus 261 ~~~~gG--~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAKGG--ITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSCTT--HHHHHHHHHCCCEEEEEC
T ss_pred CccchH--HHHHHHHHHCCCEEEEeC
Confidence 754332 256777778888777644
No 473
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.95 E-value=0.0065 Score=44.00 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.-|+|+|++|||||+|...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999997643
No 474
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.0044 Score=48.29 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998654
No 475
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.94 E-value=0.0046 Score=44.92 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.+++.|++|+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35799999999999999999664
No 476
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.93 E-value=0.0071 Score=41.63 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=20.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
.+..-|++.|.+|+||||+++.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445679999999999999999855
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.93 E-value=0.0051 Score=48.63 Aligned_cols=22 Identities=50% Similarity=0.557 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030686 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++++|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999986653
No 478
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.92 E-value=0.0076 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
..+|+++|++|+||||+.+.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999998654
No 479
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.92 E-value=0.0075 Score=43.72 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998653
No 480
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.92 E-value=0.0054 Score=41.50 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=16.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030686 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5778999999999999853
No 481
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0048 Score=46.65 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
--|++.|+||+|||+|++++..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999653
No 482
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.91 E-value=0.0054 Score=45.27 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|.|++|+|||++++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998664
No 483
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.88 E-value=0.0057 Score=44.73 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|+|+|++|+|||+|...|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999654
No 484
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.0065 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.|++.|+||+|||+|++++..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 35799999999999999999654
No 485
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.0051 Score=44.90 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
+++.|++|+||||+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999986643
No 486
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.86 E-value=0.02 Score=41.36 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=15.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030686 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
+++.|++|+|||++++.+.
T Consensus 51 ~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp EEECSSTTSSHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHH
Confidence 4555669999999999965
No 487
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.86 E-value=0.0073 Score=41.23 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=19.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
++..-|++.|.+|+||||+++.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 345678999999999999999864
No 488
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.85 E-value=0.0065 Score=42.18 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030686 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
++..-|++.|.+|+||||+++.+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445679999999999999999864
No 489
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.76 E-value=0.0055 Score=47.54 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 030686 15 KLVIVGDGGTGKTTFVKRH 33 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l 33 (173)
-++|+|++|+|||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999985
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.006 Score=48.21 Aligned_cols=21 Identities=48% Similarity=0.754 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030686 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
++++|+.|+|||||++.+.+-
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 699999999999999986543
No 491
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.008 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.|++.|+||+|||+|++++..
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999999654
No 492
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.73 E-value=0.0064 Score=44.30 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030686 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998654
No 493
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.72 E-value=0.0087 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030686 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
....+++.|++|+|||++++.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998653
No 494
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.71 E-value=0.0026 Score=44.72 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030686 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999998654
No 495
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.0067 Score=45.42 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|++.|+||+|||+|++++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 5689999999999999999654
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.69 E-value=0.0071 Score=44.44 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998653
No 497
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.68 E-value=0.0063 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-+++++|++|+|||++++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
No 498
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.67 E-value=0.0056 Score=45.06 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030686 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998654
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.66 E-value=0.0051 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...++++|++|||||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 35799999999999999998653
No 500
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.66 E-value=0.0079 Score=43.43 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030686 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988653
Done!