BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030687
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ R D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 15 LREMEVK---CKPKVGYMKR--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 69
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 70 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 106
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ R D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 12 LREMEVK---CKPKVGYMKR--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 66
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 67 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 103
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ R D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 12 LREMEVK---CKPKVGYMKR--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 66
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 67 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 103
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 16 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 70
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 71 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 107
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 19 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 73
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 74 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 110
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 10 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 64
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 65 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 101
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 16 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 70
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 71 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 107
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 16 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 70
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 71 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 107
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 16 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 70
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 71 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 107
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 14 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 68
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 69 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 105
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 15 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 69
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 70 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 106
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 16 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 70
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 71 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 107
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 16 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 70
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 71 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 107
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 16 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 70
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 71 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 107
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 16 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 70
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 71 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 107
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 16 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 70
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 71 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 107
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 12 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 66
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 67 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 103
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 14 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 68
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 69 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 105
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 13 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 67
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 68 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 104
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LREM VK PK Y+ + D+ + +R +DW+++ Y+ + L++NY+D
Sbjct: 12 LREMEVK---CKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 66
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
RFLS + +GK +QL+ A + LA+K EE P + E
Sbjct: 67 RFLSSMSVLRGK---LQLVGTAAMLLASKFEEIYPPEVAE 103
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 58 MGFFPFQTVSEELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRF 117
M + +++ +LR M E P Y ++ L S +R+ W+L+ +
Sbjct: 1 MAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPS-MRKIVATWMLEVCEEQKC 59
Query: 118 GPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
F L+MNYLDRFLS+ + K + +QLL C+ +A+KM+E+ +PL E
Sbjct: 60 EEEVFPLAMNYLDRFLSLEPVKKSR---LQLLGATCMFVASKMKET-IPLTAE 108
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 66 VSEELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLS 125
+++ +LR M E P Y ++ L S +R+ W+L+ + F L+
Sbjct: 23 LNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPS-MRKIVATWMLEVCEEQKCEEEVFPLA 81
Query: 126 MNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
MNYLDRFLS+ + K + +QLL C+ +A+KM+E+ +PL E
Sbjct: 82 MNYLDRFLSLEPVKKSR---LQLLGATCMFVASKMKET-IPLTAE 122
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 64 QTVSEELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFC 123
Q V + LLR E +P+ Y ++ ++ +R+ W+L+ R F
Sbjct: 39 QRVLQSLLR----LEERYVPRASYFQCVQR-EIKPHMRKMLAYWMLEVCEEQRCEEEVFP 93
Query: 124 LSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
L+MNYLDR+LS K + +QLL C+ LA+K+ E+ PL +E
Sbjct: 94 LAMNYLDRYLSCVPTRKAQ---LQLLGAVCMLLASKLRET-TPLTIE 136
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 68 EELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMN 127
EE+ + M KE L +L + L ++R LDW+++ Y+ +F L+ +
Sbjct: 19 EEVWKIMLNKEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQD 76
Query: 128 YLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLL 168
+ DR+++ E +QL+ ++ L +AAK+EE P L
Sbjct: 77 FFDRYMATQE--NVVKTLLQLIGISSLFIAAKLEEIYPPKL 115
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 95 DLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACL 154
++ +R +DW+++ +R + ++++ +DRF+ +PK +QL+ V +
Sbjct: 32 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK---MLQLVGVTAM 88
Query: 155 SLAAKMEESEVP 166
+A+K EE P
Sbjct: 89 FIASKYEEMYPP 100
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 71 LREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLD 130
LR++ +E + PK+ L R +G++ R +DW+++ +R + ++++ +D
Sbjct: 12 LRQLE-EEQAVRPKY-LLGREVTGNM----RAILIDWLVQVQMKFRLLQETMYMTVSIID 65
Query: 131 RFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVP 166
RF+ +PK +QL+ V + +A+K EE P
Sbjct: 66 RFMQNNCVPKK---MLQLVGVTAMFIASKYEEMYPP 98
>pdb|2INP|L Chain L, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 89
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 141 GKDWTVQLLTVACLSLAAKMEESEVPLLVE 170
G+DW VQ + + +S+A ++E + ++E
Sbjct: 58 GRDWDVQEMLINVISIAGNVDEDDDHFILE 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,541,150
Number of Sequences: 62578
Number of extensions: 156337
Number of successful extensions: 342
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 28
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)