Query 030687
Match_columns 173
No_of_seqs 206 out of 1237
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:17:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 99.9 1.5E-27 5.1E-32 197.8 8.4 103 65-172 5-107 (260)
2 2w96_A G1/S-specific cyclin-D1 99.9 6.4E-27 2.2E-31 195.1 9.3 101 67-171 24-124 (271)
3 2f2c_A Cyclin homolog, V-cycli 99.9 7.6E-27 2.6E-31 193.0 9.6 100 68-172 21-120 (254)
4 3g33_B CCND3 protein; Ser/Thr 99.9 1.3E-26 4.4E-31 197.1 10.1 103 65-171 36-138 (306)
5 1w98_B Cyclin E, G1/S-specific 99.9 2.7E-26 9.1E-31 193.0 9.7 104 63-171 14-118 (283)
6 1g3n_C V-cyclin; cyclin-depend 99.9 1.3E-26 4.3E-31 191.9 7.4 100 67-171 19-118 (257)
7 1f5q_B Gamma herpesvirus cycli 99.9 4.1E-27 1.4E-31 195.7 3.3 97 66-171 20-116 (252)
8 2b9r_A Human cyclin B1; cell c 99.9 2.2E-26 7.5E-31 191.9 4.9 101 65-171 5-105 (269)
9 2ivx_A Cyclin-T2; transcriptio 99.7 4.5E-17 1.5E-21 134.1 6.5 70 98-171 28-97 (257)
10 2i53_A Cyclin K; cell cycle, t 99.7 2.4E-17 8.2E-22 135.5 4.3 73 95-171 35-107 (258)
11 2pk2_A Cyclin-T1, protein TAT; 99.6 2.3E-16 7.8E-21 136.8 5.9 71 97-171 34-104 (358)
12 3rgf_B Cyclin-C; protein kinas 99.6 9.3E-16 3.2E-20 128.7 6.4 70 99-171 41-110 (285)
13 1zp2_A RNA polymerase II holoe 99.6 3.5E-15 1.2E-19 121.6 6.1 67 101-171 28-95 (235)
14 1jkw_A Cyclin H; cell cycle, c 99.5 6.4E-14 2.2E-18 119.7 6.5 69 99-171 55-125 (323)
15 1c9b_A General transcription f 99.0 4.8E-10 1.7E-14 89.1 5.8 69 99-171 3-71 (207)
16 1ais_B TFB TFIIB, protein (tra 98.3 5E-07 1.7E-11 71.1 5.3 68 99-170 7-74 (200)
17 3k7a_M Transcription initiatio 97.1 0.00016 5.5E-09 61.8 2.5 66 101-170 126-191 (345)
18 2pmi_B PHO85 cyclin PHO80, ami 95.7 0.021 7.1E-07 48.1 6.6 59 104-163 77-136 (293)
19 4bbr_M Transcription initiatio 95.2 0.042 1.4E-06 46.9 6.9 59 102-163 127-185 (345)
20 1ais_B TFB TFIIB, protein (tra 92.6 0.24 8.2E-06 38.2 6.1 55 106-163 110-164 (200)
21 1c9b_A General transcription f 89.9 0.97 3.3E-05 34.9 7.1 56 105-163 103-158 (207)
22 1zp2_A RNA polymerase II holoe 82.0 1.8 6.1E-05 34.2 4.8 54 107-163 137-190 (235)
23 2i53_A Cyclin K; cell cycle, t 80.1 3 0.0001 33.1 5.6 56 106-164 153-212 (258)
24 2ivx_A Cyclin-T2; transcriptio 74.7 9.1 0.00031 30.3 7.0 58 107-167 149-207 (257)
25 3k7a_M Transcription initiatio 71.0 0.85 2.9E-05 38.5 0.0 49 112-163 243-291 (345)
26 3rgf_B Cyclin-C; protein kinas 68.1 4.5 0.00016 32.9 3.8 53 107-162 160-212 (285)
27 2b9r_A Human cyclin B1; cell c 66.6 12 0.00041 30.0 6.1 54 106-162 140-193 (269)
28 4bbr_M Transcription initiatio 60.7 1.8 6.1E-05 36.7 0.0 54 106-162 237-290 (345)
29 2pk2_A Cyclin-T1, protein TAT; 60.2 9.4 0.00032 32.3 4.5 57 107-166 156-213 (358)
30 2cch_B Cyclin A2, cyclin-A; co 47.3 25 0.00084 27.9 4.8 53 106-161 141-195 (260)
31 1g3n_C V-cyclin; cyclin-depend 45.7 30 0.001 27.3 5.1 53 107-162 154-210 (257)
32 2f2c_A Cyclin homolog, V-cycli 39.8 38 0.0013 26.6 4.8 49 110-161 158-210 (254)
33 3h4c_A Transcription factor TF 37.5 1E+02 0.0035 24.7 6.8 56 103-161 14-72 (260)
34 1fs1_B SKP1, cyclin A/CDK2-ass 33.9 77 0.0026 22.8 5.3 55 94-162 42-123 (141)
35 1jkw_A Cyclin H; cell cycle, c 33.6 48 0.0016 27.3 4.6 43 121-166 187-229 (323)
36 2w96_A G1/S-specific cyclin-D1 30.2 59 0.002 25.7 4.5 16 146-161 200-215 (271)
37 3o0g_D Cyclin-dependent kinase 26.4 1.8E+02 0.0061 21.6 6.1 63 102-167 28-101 (149)
38 3g33_B CCND3 protein; Ser/Thr 26.1 1.1E+02 0.0037 24.9 5.4 18 146-163 214-231 (306)
39 1unl_D Cyclin-dependent kinase 24.7 1.9E+02 0.0063 22.6 6.1 64 102-167 73-146 (208)
40 3v7d_A Suppressor of kinetocho 23.6 1E+02 0.0035 23.0 4.5 17 146-162 119-135 (169)
41 1vcb_B Protein (elongin C); tu 23.2 1.6E+02 0.0054 20.4 5.2 39 92-130 61-111 (112)
42 2zc2_A DNAD-like replication p 23.1 83 0.0028 20.0 3.4 31 95-129 17-47 (78)
43 1uhw_A Pleckstrin; three-helix 22.3 70 0.0024 22.6 3.1 30 101-131 40-69 (109)
44 2ast_A S-phase kinase-associat 21.0 1.5E+02 0.0052 21.5 4.9 17 146-162 112-128 (159)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.94 E-value=1.5e-27 Score=197.84 Aligned_cols=103 Identities=29% Similarity=0.516 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHhccCCCccchhhccCCCCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCc
Q 030687 65 TVSEELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDW 144 (173)
Q Consensus 65 ~y~~eil~~L~~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w 144 (173)
+|.+||+++|+++|.++.|.++|+.+ |+++++.+|..+++||.+|+..|++.++|+++||+|+|||++...+++.+
T Consensus 5 eY~~di~~~l~~~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~-- 80 (260)
T 2cch_B 5 DYHEDIHTYLREMEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK-- 80 (260)
T ss_dssp TTHHHHHHHHHHHHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHH--
T ss_pred hHHHHHHHHHHHHHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHH--
Confidence 89999999999999999999999986 67899999999999999999999999999999999999999999998887
Q ss_pred cchhhHHHHHHhhhhcccccCCCCCCCC
Q 030687 145 TVQLLTVACLSLAAKMEESEVPLLVELQ 172 (173)
Q Consensus 145 ~lQLlgvaCL~LAaK~EE~~~P~~~dlq 172 (173)
+||+|+|||+||+|+||+.+|.+.||+
T Consensus 81 -lqlv~~acl~iA~K~ee~~~~~~~d~~ 107 (260)
T 2cch_B 81 -LQLVGTAAMLLASKFEEIYPPEVAEFV 107 (260)
T ss_dssp -HHHHHHHHHHHHHHHHCSSCCCHHHHH
T ss_pred -HhHHHHHHHHHHHHhcccCCCCHHHHH
Confidence 999999999999999999999987763
No 2
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.94 E-value=6.4e-27 Score=195.05 Aligned_cols=101 Identities=30% Similarity=0.494 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhccCCCccchhhccCCCCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccc
Q 030687 67 SEELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTV 146 (173)
Q Consensus 67 ~~eil~~L~~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~l 146 (173)
++|++.+|+++|.++.|..+|+...| +++++.+|.++++||.+|+..|++.++|+++||+|+|||++...+++.+ +
T Consensus 24 ~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~---l 99 (271)
T 2w96_A 24 NDRVLRAMLKAEETCAPSVSYFKCVQ-KEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSR---L 99 (271)
T ss_dssp -CHHHHHHHHHHHHTCCCTTHHHHTC-SSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTT---H
T ss_pred HHHHHHHHHHHHHHhCCCchHHHhcC-CcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHH---H
Confidence 77999999999999999999987654 6899999999999999999999999999999999999999999999888 9
Q ss_pred hhhHHHHHHhhhhcccccCCCCCCC
Q 030687 147 QLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 147 QLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
||+|+|||+||+|+||+.||.+.+|
T Consensus 100 qlv~~acL~iAsK~EE~~p~~~~~~ 124 (271)
T 2w96_A 100 QLLGATCMFVASKMKETIPLTAEKL 124 (271)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 9999999999999999988887665
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.94 E-value=7.6e-27 Score=192.97 Aligned_cols=100 Identities=22% Similarity=0.316 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhccCCCccchhhccCCCCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccch
Q 030687 68 EELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQ 147 (173)
Q Consensus 68 ~eil~~L~~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQ 147 (173)
+||++ |+++|.++.|.++|++.. |+++++.+|.++|+||.+|+..|++.++|+|+||+|+|||++...+++.+ +|
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~---lq 95 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWEI-QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKT---LQ 95 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTTT-CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTT---HH
T ss_pred HHHHH-HHHHHHhhCCCchhhhhc-CccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHH---cc
Confidence 89999 999999999999999753 56899999999999999999999999999999999999999999999888 99
Q ss_pred hhHHHHHHhhhhcccccCCCCCCCC
Q 030687 148 LLTVACLSLAAKMEESEVPLLVELQ 172 (173)
Q Consensus 148 LlgvaCL~LAaK~EE~~~P~~~dlq 172 (173)
|+|+|||+||+|+||..+|.+.||.
T Consensus 96 Lv~~acl~iA~K~eE~~~p~~~d~~ 120 (254)
T 2f2c_A 96 KIGAACVLIGSKIRTVKPMTVSKLT 120 (254)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHS
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHH
Confidence 9999999999999999999987763
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.93 E-value=1.3e-26 Score=197.15 Aligned_cols=103 Identities=27% Similarity=0.489 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHhccCCCccchhhccCCCCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCc
Q 030687 65 TVSEELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDW 144 (173)
Q Consensus 65 ~y~~eil~~L~~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w 144 (173)
.|++||+++|+++|.++.|.++|++..| +++++.+|.++++||.+|+..|++.++|+++||+|+||||+...+++.+
T Consensus 36 ~~~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~-- 112 (306)
T 3g33_B 36 LGDQRVLQSLLRLEERYVPRASYFQCVQ-REIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQ-- 112 (306)
T ss_dssp -CHHHHHHHHHHHGGGGSCSSCCTTTST-TTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGG--
T ss_pred cchHHHHHHHHHHHHHhCCCcHHHhhcC-ccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHH--
Confidence 5999999999999999999999998644 6899999999999999999999999999999999999999999887766
Q ss_pred cchhhHHHHHHhhhhcccccCCCCCCC
Q 030687 145 TVQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 145 ~lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
+||+|+|||+||+|+||+.+|.+.+|
T Consensus 113 -lqLv~~tcL~lAsK~eE~~p~~~~~l 138 (306)
T 3g33_B 113 -LQLLGAVCMLLASKLRETTPLTIEKL 138 (306)
T ss_dssp -HHHHHHHHHHHHHHHHCSSCCCTTHH
T ss_pred -HHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 99999999999999999999988875
No 5
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.93 E-value=2.7e-26 Score=192.96 Aligned_cols=104 Identities=27% Similarity=0.457 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHHHhccCCCccchhhccCCCCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhc-cccCCC
Q 030687 63 FQTVSEELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSV-YELPKG 141 (173)
Q Consensus 63 f~~y~~eil~~L~~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~-~~v~~~ 141 (173)
+.+|++|++.+|+++|.++.|.++|++. |+++++.+|.++++||.+|+..|++.++|+++||+|+|||++. ..+++.
T Consensus 14 ~~~y~~~i~~~l~~~E~~~~~~~~y~~~--q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~ 91 (283)
T 1w98_B 14 SWANREEVWKIMLNKEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKT 91 (283)
T ss_dssp SSSCHHHHHHHHHHHTTTSCCCTTGGGG--CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGG
T ss_pred hhcCHHHHHHHHHHHHHHhCCCchhhcc--CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHH
Confidence 4589999999999999999999999985 6799999999999999999999999999999999999999998 567665
Q ss_pred CCccchhhHHHHHHhhhhcccccCCCCCCC
Q 030687 142 KDWTVQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 142 ~~w~lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
+ +||+|+|||+||+|+||+.+|.+.||
T Consensus 92 ~---lqlv~~acL~iA~K~eE~~~p~l~~~ 118 (283)
T 1w98_B 92 L---LQLIGISSLFIAAKLEEIYPPKLHQF 118 (283)
T ss_dssp G---HHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred H---HHHHHHHHHHHHHHhcccCCCcHHHH
Confidence 5 99999999999999999999988765
No 6
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.93 E-value=1.3e-26 Score=191.92 Aligned_cols=100 Identities=22% Similarity=0.352 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhccCCCccchhhccCCCCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccc
Q 030687 67 SEELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTV 146 (173)
Q Consensus 67 ~~eil~~L~~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~l 146 (173)
++||+ +|+++|.++.|.++|++.. |+++++.+|.++|+||.+|+..|++.++|+|+||+|+|||++...+++.+ +
T Consensus 19 ~~~i~-~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~---l 93 (257)
T 1g3n_C 19 DRIFY-NILEIEPRFLTSDSVFGTF-QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEH---F 93 (257)
T ss_dssp HHHHH-HHHHHGGGGCCCGGGHHHH-TSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHH---H
T ss_pred HHHHH-HHHHHHHHhCCChhHHHhc-CccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHH---H
Confidence 48999 9999999999999998654 46899999999999999999999999999999999999999999998887 9
Q ss_pred hhhHHHHHHhhhhcccccCCCCCCC
Q 030687 147 QLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 147 QLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
||+|+|||+||+|+||+.+|.+.||
T Consensus 94 qLv~~acl~iA~K~eE~~~p~~~d~ 118 (257)
T 1g3n_C 94 QKTGSACLLVASKLRSLTPISTSSL 118 (257)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHccccCCCHHHH
Confidence 9999999999999999999988776
No 7
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.93 E-value=4.1e-27 Score=195.65 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHhccCCCccchhhccCCCCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCcc
Q 030687 66 VSEELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWT 145 (173)
Q Consensus 66 y~~eil~~L~~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~ 145 (173)
.+++++.+|+++|.++.|. . .|+++++.+|.++|+||.+|+..|+++++|+|+||||+||||+...+++.+
T Consensus 20 ~~d~i~~~l~~~E~~~~p~-----~-~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~--- 90 (252)
T 1f5q_B 20 CRQMIYRSEREHDARMVGV-----N-VDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDREN--- 90 (252)
T ss_dssp HHHHHHHHHHHHHHHHSSS-----S-HHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGG---
T ss_pred hHHHHHHHHHHHHHHhCcC-----c-cCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHH---
Confidence 4679999999999999982 1 235688899999999999999999999999999999999999999998887
Q ss_pred chhhHHHHHHhhhhcccccCCCCCCC
Q 030687 146 VQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 146 lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
+||+|+|||+||||+||+.+|.+.+|
T Consensus 91 lqLvg~tcl~iAsK~eE~~p~~~~~l 116 (252)
T 1f5q_B 91 YQSTAAVALHIAGKVRAYMPIKATQL 116 (252)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999987765
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.92 E-value=2.2e-26 Score=191.93 Aligned_cols=101 Identities=20% Similarity=0.401 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHHhccCCCccchhhccCCCCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCc
Q 030687 65 TVSEELLREMAVKEGELLPKHDYLNRLRSGDLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDW 144 (173)
Q Consensus 65 ~y~~eil~~L~~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w 144 (173)
+|.+||+.+|+++|.++.|+++|++. + ++++.+|..+++||.+++..|++.++|+++||+|+|||++...+++.+
T Consensus 5 eY~~di~~~l~~~E~~~~~~~~y~~~--q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~-- 79 (269)
T 2b9r_A 5 EYVKDIYAYLRQLEAAQAVRPKYLLG--R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM-- 79 (269)
T ss_dssp --CCTTTTTHHHHHHTTCCCTTTTSS--S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG--
T ss_pred HHHHHHHHHHHHHHHhhCCCcccccC--C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH--
Confidence 89999999999999999999999975 4 899999999999999999999999999999999999999999999887
Q ss_pred cchhhHHHHHHhhhhcccccCCCCCCC
Q 030687 145 TVQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 145 ~lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
+||+|+|||+||+|+||+.+|.+.||
T Consensus 80 -lqlv~~acL~iA~K~eE~~~p~~~d~ 105 (269)
T 2b9r_A 80 -LQLVGVTAMFIASKYEEMYPPEIGDF 105 (269)
T ss_dssp -HHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred -hhHHHHHHHHHHHhcccccCccHHHH
Confidence 99999999999999999999988776
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.67 E-value=4.5e-17 Score=134.08 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccccCCCCCCC
Q 030687 98 SRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 98 ~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
..+|..+++||.+++..|++.++|+++|++|+|||++...+.+.+ +|++|+|||+||+|+||+ +|.+.|+
T Consensus 28 ~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~EE~-p~~l~d~ 97 (257)
T 2ivx_A 28 LSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFN---KNIISSTALFLAAKVEEQ-ARKLEHV 97 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhC---HHHHHHHHHHHHhccccC-CcCHHHH
Confidence 489999999999999999999999999999999999999998877 999999999999999999 7777665
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.67 E-value=2.4e-17 Score=135.52 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccccCCCCCCC
Q 030687 95 DLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 95 ~i~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
++...+|..+++||.+++..|++.++|+++|++|+|||++...+.+.+ +|++|+|||+||+|+||. +|.+.||
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~eE~-~~~l~d~ 107 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFP---RYVTGACCLFLAGKVEET-PKKCKDI 107 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcC---HHHHHHHHHHHHHccccc-cccHHHH
Confidence 455689999999999999999999999999999999999999998887 999999999999999995 6777665
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.62 E-value=2.3e-16 Score=136.75 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccccCCCCCCC
Q 030687 97 DSRVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 97 ~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
...+|..+++||.+|+..|++.++|+++|++|+|||++...+.+.+ +|++|+|||+||+|+||+ +|.+.||
T Consensus 34 E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~---~qlva~acLfLA~K~EE~-p~~l~d~ 104 (358)
T 2pk2_A 34 ELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFP---GNSVAPAALFLAAKVEEQ-PKKLEHV 104 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccccc---HHHHHHHHHHHHHhhccC-CCCHHHH
Confidence 3589999999999999999999999999999999999999998877 999999999999999999 6776665
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.59 E-value=9.3e-16 Score=128.73 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccccCCCCCCC
Q 030687 99 RVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 99 ~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
.+|..+++||.+++..+++.++|+++|++|+|||++...+.+.+ +|++|+|||+||+|+||+.+|.+.|+
T Consensus 41 ~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~~~~~~di 110 (285)
T 3rgf_B 41 KLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSID---PVLMAPTCVFLASKVEEFGVVSNTRL 110 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSC---HHHHHHHHHHHHHHHTTSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcC---HHHHHHHHHHHHHhhhccccccHHHH
Confidence 78999999999999999999999999999999999999998877 99999999999999999987766554
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.55 E-value=3.5e-15 Score=121.55 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCC-CCCccchhhHHHHHHhhhhcccccCCCCCCC
Q 030687 101 RREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPK-GKDWTVQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 101 R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~-~~~w~lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
|..+++||.+++..+++.++|+++|++|+|||++...+.+ .+ +|++|+|||+||+|+||+ ++.+.|+
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~---~~lv~~acL~lA~K~Ee~-~~~l~d~ 95 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFS---LEALVATCIYLSCKVEEC-PVHIRTI 95 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccC---HHHHHHHHHHHHhccccC-cccHHHH
Confidence 9999999999999999999999999999999999999988 67 999999999999999996 5555554
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.45 E-value=6.4e-14 Score=119.67 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccccCCCCCCC
Q 030687 99 RVRREALDWILKAHAHYR--FGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 99 ~~R~~lvdWi~~v~~~~~--l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
..|....+||.+++..|+ +.++|+++|++|+|||++...+.+.+ +|++|+|||+||+|+||+. +.+.+|
T Consensus 55 ~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~-~~l~d~ 125 (323)
T 1jkw_A 55 TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYH---PRIIMLTCAFLACKVDEFN-VSSPQF 125 (323)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSC---HHHHHHHHHHHHHHHTTCC-CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcC---HHHHHHHHHHHHHhhhcCC-CCHHHH
Confidence 689999999999999999 99999999999999999999998877 9999999999999999984 555544
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=98.98 E-value=4.8e-10 Score=89.15 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccccCCCCCCC
Q 030687 99 RVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVEL 171 (173)
Q Consensus 99 ~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~~~P~~~dl 171 (173)
+......++|.+++..+++...|...|++|++||+....+...+ .+++++|||+||+|+||+ ++.+.|+
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~---~~~v~aaclylAcK~ee~-p~~l~di 71 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRA---NDAIASACLYIACRQEGV-PRTFKEI 71 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCC---HHHHHHHHHHHHHHhcCC-CCCHHHH
Confidence 35678899999999999999999999999999999998888777 999999999999999998 5665543
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.33 E-value=5e-07 Score=71.10 Aligned_cols=68 Identities=13% Similarity=0.038 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccccCCCCCC
Q 030687 99 RVRREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170 (173)
Q Consensus 99 ~~R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~~~P~~~d 170 (173)
.......++|.+++..+++.+.+...|..|++|++....+...+ .+.++++|+++|+|.||. +..+.|
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~---~~~vaaAclylAcr~~~~-p~~l~d 74 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRS---IESVMAACVYAACRLLKV-PRTLDE 74 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCC---HHHHHHHHHHHHHHHHTC-CCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCC---HHHHHHHHHHHHHHHcCC-CCCHHH
Confidence 34568999999999999999999999999999999988777666 999999999999999995 444443
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.00016 Score=61.84 Aligned_cols=66 Identities=9% Similarity=-0.013 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccccCCCCCC
Q 030687 101 RREALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVPLLVE 170 (173)
Q Consensus 101 R~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~~~P~~~d 170 (173)
...+...|..++..+++...+.-.|..|+.|++....+...+ .+.+++|||+||+|.|++ |..+.|
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~---~~~vaaAclyiAcR~e~~-prtl~e 191 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKE 191 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCC---SHHHHTTTTTTTSBTTBS-SCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCc---HHHHHHHHHHHHHHHcCC-CccHHH
Confidence 457788899999999999999999999999999998887777 999999999999999987 444443
No 18
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=95.72 E-value=0.021 Score=48.13 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccc-cCCCCCccchhhHHHHHHhhhhcccc
Q 030687 104 ALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYE-LPKGKDWTVQLLTVACLSLAAKMEES 163 (173)
Q Consensus 104 lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~-v~~~~~w~lQLlgvaCL~LAaK~EE~ 163 (173)
+-+|+..+..+-++++.++.+|+.|+||+....+ +.. .++..+-+-++||.+|+|+-+-
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l-~~~nvHRLlLtALmlAsK~ldD 136 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTL-NSLTAHRFLLTATTVATKGLCD 136 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCC-STTTHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCcc-CCchHHHHHHHHHHHHHHhccc
Confidence 4568888999999999999999999999988543 222 2445888899999999999553
No 19
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=95.21 E-value=0.042 Score=46.94 Aligned_cols=59 Identities=8% Similarity=-0.014 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccc
Q 030687 102 REALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEES 163 (173)
Q Consensus 102 ~~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~ 163 (173)
..+...|..++..+++...+.-.|..++-++.....+...+ ...++++|+++|+|.+++
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs---~e~vaAAclYiACR~~~~ 185 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV 185 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCC---HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCC---HHHHHHHHHHHHHHhcCC
Confidence 45667788999999999999999999999999887777666 999999999999999875
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=92.61 E-value=0.24 Score=38.18 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccc
Q 030687 106 DWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEES 163 (173)
Q Consensus 106 dWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~ 163 (173)
+.|.+.+..++++.++.-.|..++.+.....-....+ -..+++||+++|+++...
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~---P~~iAaAaly~A~~~~~~ 164 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKS---PAGLVAAALYIASLLEGE 164 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSC---HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCC---HHHHHHHHHHHHHHHhCC
Confidence 5666788889999999999999999998765554444 888999999999999654
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=89.89 E-value=0.97 Score=34.90 Aligned_cols=56 Identities=7% Similarity=0.062 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccc
Q 030687 105 LDWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEES 163 (173)
Q Consensus 105 vdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~ 163 (173)
.+.|.+.+..++++.++.-+|..++.+-+...-....+ -.-+++||+++|+++...
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~---P~~IAaAaiylA~~~~~~ 158 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRS---PISVAAAAIYMASQASAE 158 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCC---HHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCC---hHHHHHHHHHHHHHHHCC
Confidence 34556778889999998899999988877644333334 788999999999999754
No 22
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=81.98 E-value=1.8 Score=34.16 Aligned_cols=54 Identities=9% Similarity=0.002 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccc
Q 030687 107 WILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEES 163 (173)
Q Consensus 107 Wi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~ 163 (173)
+|.......+++.++.-+|.+++..-+.....-... -..+|+||+++|+++-..
T Consensus 137 ~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~---Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 137 SLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAH---PHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSC---HHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccC---HHHHHHHHHHHHHHhcCC
Confidence 344444567888888889999998866554433334 678999999999998653
No 23
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=80.12 E-value=3 Score=33.11 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCh----hHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhccccc
Q 030687 106 DWILKAHAHYRFGP----MSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESE 164 (173)
Q Consensus 106 dWi~~v~~~~~l~~----eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~~ 164 (173)
+++......++.+. +...+|.++++.-+.....-... -..+|+||+++|+++-...
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~ 212 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWE---PEIIAVAVMYLAGRLCKFE 212 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSC---HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccC---hHHHHHHHHHHHHHHhCCC
Confidence 35555566666665 46677878887766554433344 6789999999999986543
No 24
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=74.66 E-value=9.1 Score=30.26 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhccc-cCCCCCccchhhHHHHHHhhhhcccccCCC
Q 030687 107 WILKAHAHYRFGPMSFCLSMNYLDRFLSVYE-LPKGKDWTVQLLTVACLSLAAKMEESEVPL 167 (173)
Q Consensus 107 Wi~~v~~~~~l~~eT~~LAVnylDRfLs~~~-v~~~~~w~lQLlgvaCL~LAaK~EE~~~P~ 167 (173)
++......++.+.+...+|.+++..-+.... .-... -..+|+||+++|+++-....|.
T Consensus 149 fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~p~ 207 (257)
T 2ivx_A 149 DVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYK---PTVIACVCIHLACKWSNWEIPV 207 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSC---HHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCC---HHHHHHHHHHHHHHHhCCCCCC
Confidence 4445556667777888888888755442122 22223 6789999999999996654443
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=71.01 E-value=0.85 Score=38.54 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccc
Q 030687 112 HAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEES 163 (173)
Q Consensus 112 ~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~ 163 (173)
+..++++.++..+|..++.+.+...-....+ -.-|++||++||+++-..
T Consensus 243 ~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~---P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 243 CSHLGLPMQVTTSAEYTAKKCKEIKEIAGKS---PITIAVVSIYLNILLFQI 291 (345)
T ss_dssp ----------------------------------------------------
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhchhcCCC---HHHHHHHHHHHHHHHHCC
Confidence 3344444444444444444433322111122 456899999999998653
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=68.07 E-value=4.5 Score=32.92 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhccc
Q 030687 107 WILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEE 162 (173)
Q Consensus 107 Wi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE 162 (173)
++.+....++....+..+|.+++..-+.....-... -..||++|+++|+++..
T Consensus 160 fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~---Ps~IAaAaiylA~~~~~ 212 (285)
T 3rgf_B 160 PLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYP---PFMIALACLHVACVVQQ 212 (285)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSC---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccC---HHHHHHHHHHHHHHHcC
Confidence 444555566677778888888888765443222223 57899999999999854
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=66.61 E-value=12 Score=30.01 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhccc
Q 030687 106 DWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEE 162 (173)
Q Consensus 106 dWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE 162 (173)
+++...+...+.+.++..+|-.+++.-+.....-... -..+|+||+.+|.++-.
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~---Ps~iAaAai~lA~~~l~ 193 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFP---PSQIAAGAFSLALKILD 193 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSC---TTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCC---HHHHHHHHHHHHHHHhC
Confidence 4555555566667777777777777766555444334 56899999999998754
No 28
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=60.65 E-value=1.8 Score=36.70 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhccc
Q 030687 106 DWILKAHAHYRFGPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEE 162 (173)
Q Consensus 106 dWi~~v~~~~~l~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE 162 (173)
++|.+.+..++++.++.-.|..++.+.....-....+ -.-+++||+++|+++-.
T Consensus 237 ~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~---P~~IAAAaIylAa~l~g 290 (345)
T 4bbr_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKS---PITIAVVSIYLNILLFQ 290 (345)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCC---hHHHHHHHHHHHHHHhC
Confidence 3445555555555555555555555544322222222 55689999999999854
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=60.22 E-value=9.4 Score=32.27 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhccc-cCCCCCccchhhHHHHHHhhhhcccccCC
Q 030687 107 WILKAHAHYRFGPMSFCLSMNYLDRFLSVYE-LPKGKDWTVQLLTVACLSLAAKMEESEVP 166 (173)
Q Consensus 107 Wi~~v~~~~~l~~eT~~LAVnylDRfLs~~~-v~~~~~w~lQLlgvaCL~LAaK~EE~~~P 166 (173)
+|......++.+.+...+|.+++..-+.... .-... -..||+||+++|+++-...+|
T Consensus 156 fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~---Ps~IAaAAI~lA~~~l~~~~p 213 (358)
T 2pk2_A 156 HVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT---PPVVACVCIHLACKWSNWEIP 213 (358)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSC---HHHHTTTTTTTHHHHTTCCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccC---HHHHHHHHHHHHHHHhCCCCC
Confidence 4445555667777888888888865542222 12223 668999999999999765544
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=47.27 E-value=25 Score=27.87 Aligned_cols=53 Identities=15% Similarity=-0.003 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHHhhccc-cCCCCCccchhhHHHHHHhhhhcc
Q 030687 106 DWILKAHAHYRFGP-MSFCLSMNYLDRFLSVYE-LPKGKDWTVQLLTVACLSLAAKME 161 (173)
Q Consensus 106 dWi~~v~~~~~l~~-eT~~LAVnylDRfLs~~~-v~~~~~w~lQLlgvaCL~LAaK~E 161 (173)
+|+......++.+. .+..+|-.+++.-+.... .-... -..+|+||+++|++.-
T Consensus 141 ~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~---Ps~iAaAai~lA~~~~ 195 (260)
T 2cch_B 141 QFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYL---PSVIAGAAFHLALYTV 195 (260)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCC---HHHHHHHHHHHHHHHh
Confidence 34444445555443 455566666665443333 22233 5677888888888764
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=45.69 E-value=30 Score=27.26 Aligned_cols=53 Identities=8% Similarity=-0.141 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCChhH----HHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhccc
Q 030687 107 WILKAHAHYRFGPMS----FCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEE 162 (173)
Q Consensus 107 Wi~~v~~~~~l~~eT----~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE 162 (173)
|+.......+.+.++ ..+|-.+++.-+.....-.-+ -..+|+||+++|.+.-.
T Consensus 154 fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~---PS~iAaAai~lA~~~l~ 210 (257)
T 1g3n_C 154 VTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLP---ASIISAAGCALLVPANV 210 (257)
T ss_dssp HHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSC---HHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcC---HHHHHHHHHHHHHHHhC
Confidence 344444444444443 233445555444333322233 56789999999998865
No 32
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=39.77 E-value=38 Score=26.65 Aligned_cols=49 Identities=6% Similarity=-0.059 Sum_probs=28.4
Q ss_pred HHHHHhcCChhHH----HHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcc
Q 030687 110 KAHAHYRFGPMSF----CLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKME 161 (173)
Q Consensus 110 ~v~~~~~l~~eT~----~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~E 161 (173)
......+.+.++. .+|.++++.-+.....-.-+ -..+|+||+++|.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~---PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 158 PLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLS---PGLICAGGLLTTIETD 210 (254)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSC---HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccC---HHHHHHHHHHHHHHhc
Confidence 3344444544432 24555565444333333334 6789999999999984
No 33
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=37.55 E-value=1e+02 Score=24.74 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcc---ccCCCCCccchhhHHHHHHhhhhcc
Q 030687 103 EALDWILKAHAHYRFGPMSFCLSMNYLDRFLSVY---ELPKGKDWTVQLLTVACLSLAAKME 161 (173)
Q Consensus 103 ~lvdWi~~v~~~~~l~~eT~~LAVnylDRfLs~~---~v~~~~~w~lQLlgvaCL~LAaK~E 161 (173)
.+.+-|..++.+-+++...+--||-+--.|.-.. ...-++ -|=++++|+.|||.--
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~---q~dVAAAc~miAae~~ 72 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVER---QPDVAAACLMIAAEEA 72 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCC---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccc---cHHHHHHHHHHHHHHc
Confidence 3455668888888899888888988888887653 223345 8899999999999543
No 34
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=33.91 E-value=77 Score=22.75 Aligned_cols=55 Identities=20% Similarity=0.457 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHHHH------------------------HhcCChhHHH---HHHHHHHHHhhccccCCCCCccc
Q 030687 94 GDLDSRVRREALDWILKAHA------------------------HYRFGPMSFC---LSMNYLDRFLSVYELPKGKDWTV 146 (173)
Q Consensus 94 ~~i~~~~R~~lvdWi~~v~~------------------------~~~l~~eT~~---LAVnylDRfLs~~~v~~~~~w~l 146 (173)
+.++...=+++++|+..-.. .+++..++++ +|.||||- -
T Consensus 42 ~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I--------------~ 107 (141)
T 1fs1_B 42 PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI--------------K 107 (141)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHHHTC--------------H
T ss_pred CCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhh--------------h
Confidence 45677777777777764331 1456666653 45566653 5
Q ss_pred hhhHHHHHHhhhhccc
Q 030687 147 QLLTVACLSLAAKMEE 162 (173)
Q Consensus 147 QLlgvaCL~LAaK~EE 162 (173)
.|+-++|-.+|.++..
T Consensus 108 ~Lldl~c~~vA~~ikg 123 (141)
T 1fs1_B 108 GLLDVTCKTVANMIKG 123 (141)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 6788899999998854
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=33.57 E-value=48 Score=27.33 Aligned_cols=43 Identities=7% Similarity=-0.032 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhcccccCC
Q 030687 121 SFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKMEESEVP 166 (173)
Q Consensus 121 T~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~EE~~~P 166 (173)
...+|.+++..-+.....-... -..||+||+++|++......|
T Consensus 187 l~~~A~~~l~~sl~t~~~l~~~---Ps~IAaAai~lA~~~~~~~~~ 229 (323)
T 1jkw_A 187 LRKTADDFLNRIALTDAYLLYT---PSQIALTAILSSASRAGITME 229 (323)
T ss_dssp HHHHHHHHHHHHTTSTHHHHSC---HHHHHHHHHHHHHHHHSCCCT
T ss_pred HHHHHHHHHHHHHhccHHHcCC---HHHHHHHHHHHHHHHcCCChH
Confidence 3455666666543322111122 567899999999988654433
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=30.24 E-value=59 Score=25.73 Aligned_cols=16 Identities=6% Similarity=0.036 Sum_probs=12.9
Q ss_pred chhhHHHHHHhhhhcc
Q 030687 146 VQLLTVACLSLAAKME 161 (173)
Q Consensus 146 lQLlgvaCL~LAaK~E 161 (173)
-..+|+||+++|++.-
T Consensus 200 PS~iAaAai~lA~~~l 215 (271)
T 2w96_A 200 PSMVAAGSVVAAVQGL 215 (271)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4578999999998764
No 37
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=26.42 E-value=1.8e+02 Score=21.59 Aligned_cols=63 Identities=22% Similarity=0.362 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHh--------cC-ChhHHHHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhc--ccccCCC
Q 030687 102 REALDWILKAHAHY--------RF-GPMSFCLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKM--EESEVPL 167 (173)
Q Consensus 102 ~~lvdWi~~v~~~~--------~l-~~eT~~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~--EE~~~P~ 167 (173)
.++|-|+..|-+.+ +| .|..+. -|++|=|=+-...+.. .-.+|-+-.|||+||--| .|+..|.
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvV-FvYmL~r~~v~~~~~s--e~eLqa~~lTCLYlsYSYmGNEISYPL 101 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVV-FLYMLCRDVISSEVGS--DHELQAVLLTCLYLSYSYMGNEISYPL 101 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHH-HHHHHHHHHSCTTCCS--HHHHHHHHHHHHHHHHHHHCSSSCCCS
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHH-HHHHHHHHHcccccCC--HHHHHHHHHHHHHHHHHHhcccccccC
Confidence 46888888886653 22 222211 1233333222223332 224999999999999888 6777775
No 38
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=26.12 E-value=1.1e+02 Score=24.92 Aligned_cols=18 Identities=6% Similarity=0.098 Sum_probs=14.3
Q ss_pred chhhHHHHHHhhhhcccc
Q 030687 146 VQLLTVACLSLAAKMEES 163 (173)
Q Consensus 146 lQLlgvaCL~LAaK~EE~ 163 (173)
-..+|++|+++|.+.-+.
T Consensus 214 PS~IAaAai~lA~~~l~~ 231 (306)
T 3g33_B 214 PSMIATGSIGAAVQGLGA 231 (306)
T ss_dssp HHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 567899999999987553
No 39
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=24.74 E-value=1.9e+02 Score=22.56 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhcC---ChhHH-----HHHHHHHHHHhhccccCCCCCccchhhHHHHHHhhhhc--ccccCCC
Q 030687 102 REALDWILKAHAHYRF---GPMSF-----CLSMNYLDRFLSVYELPKGKDWTVQLLTVACLSLAAKM--EESEVPL 167 (173)
Q Consensus 102 ~~lvdWi~~v~~~~~l---~~eT~-----~LAVnylDRfLs~~~v~~~~~w~lQLlgvaCL~LAaK~--EE~~~P~ 167 (173)
.++|-|+..|-+.+=+ +...| ..-|++|=|=+-...+... -.+|-+-.|||+||--| .|+..|.
T Consensus 73 ~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~~~te--~eLqa~vLTCLYlsYSYmGNEISYPL 146 (208)
T 1unl_D 73 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSD--HELQAVLLTCLYLSYSYMGNEISYPL 146 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTTCCCH--HHHHHHHHHHHHHHHHHHCSSSCCCS
T ss_pred cceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccccCCH--HHHHHHHHHHHHHHHHhhCccccccC
Confidence 4678888888665422 11111 1112333332222233322 24999999999999888 6777675
No 40
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=23.58 E-value=1e+02 Score=22.96 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.6
Q ss_pred chhhHHHHHHhhhhccc
Q 030687 146 VQLLTVACLSLAAKMEE 162 (173)
Q Consensus 146 lQLlgvaCL~LAaK~EE 162 (173)
-.|+-++|-.+|.++..
T Consensus 119 k~Lldl~c~~vA~~ikg 135 (169)
T 3v7d_A 119 KPLLDAGCKVVAEMIRG 135 (169)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 56888999999988754
No 41
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=23.17 E-value=1.6e+02 Score=20.40 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=26.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH---------hcCChhHHH---HHHHHHH
Q 030687 92 RSGDLDSRVRREALDWILKAHAH---------YRFGPMSFC---LSMNYLD 130 (173)
Q Consensus 92 q~~~i~~~~R~~lvdWi~~v~~~---------~~l~~eT~~---LAVnylD 130 (173)
+-+.++...=+++++|...-... |+..+++++ +|.||||
T Consensus 61 plpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLd 111 (112)
T 1vcb_B 61 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 111 (112)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred eCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhC
Confidence 34568889999999999755432 456666653 4666665
No 42
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=23.05 E-value=83 Score=20.03 Aligned_cols=31 Identities=6% Similarity=-0.107 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 030687 95 DLDSRVRREALDWILKAHAHYRFGPMSFCLSMNYL 129 (173)
Q Consensus 95 ~i~~~~R~~lvdWi~~v~~~~~l~~eT~~LAVnyl 129 (173)
.+++..+..+-+|+-+ ++++++.+..|+.+-
T Consensus 17 ~ls~~e~~~i~~w~~~----~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSD----DKTDPDLVRSALREA 47 (78)
T ss_dssp CCCHHHHHHHHHHHTT----TCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----hCCCHHHHHHHHHHH
Confidence 5778888888888874 788888888887654
No 43
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=22.30 E-value=70 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 030687 101 RREALDWILKAHAHYRFGPMSFCLSMNYLDR 131 (173)
Q Consensus 101 R~~lvdWi~~v~~~~~l~~eT~~LAVnylDR 131 (173)
=..+|+||++-. .-.-..|.+.++-.+++.
T Consensus 40 GselVdWLi~~~-~~~~R~EAv~lgq~Ll~~ 69 (109)
T 1uhw_A 40 GSGVIDWLVSNK-LVRNRQEGLMISASLLSE 69 (109)
T ss_dssp HHHHHHHHHHHT-SSSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcC-CCCCHHHHHHHHHHHHHC
Confidence 458999999842 222245677777777776
No 44
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=21.01 E-value=1.5e+02 Score=21.46 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=13.2
Q ss_pred chhhHHHHHHhhhhccc
Q 030687 146 VQLLTVACLSLAAKMEE 162 (173)
Q Consensus 146 lQLlgvaCL~LAaK~EE 162 (173)
-.|+-++|-++|.++..
T Consensus 112 ~~Lld~~c~~va~~i~g 128 (159)
T 2ast_A 112 KGLLDVTCKTVANMIKG 128 (159)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 45778889999888854
Done!