BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030688
MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDS
NQEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFI
KMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN

High Scoring Gene Products

Symbol, full name Information P value
MEE59
AT4G37300 		protein from Arabidopsis thaliana 4.8e-23

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030688
        (173 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2115189 - symbol:MEE59 "AT4G37300" species:370...   266  4.8e-23   1


>TAIR|locus:2115189 [details] [associations]
            symbol:MEE59 "AT4G37300" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009793 "embryo development ending in
            seed dormancy" evidence=IMP] EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0009793 EMBL:AL161591 EMBL:Z99707
            UniGene:At.20976 EMBL:AF370192 EMBL:AY039591 EMBL:AY054152
            EMBL:AY062949 IPI:IPI00520965 PIR:G85440 RefSeq:NP_195447.1
            UniGene:At.24659 PaxDb:O23157 PRIDE:O23157 ProMEX:O23157
            EnsemblPlants:AT4G37300.1 GeneID:829885 KEGG:ath:AT4G37300
            TAIR:At4g37300 eggNOG:NOG286985 HOGENOM:HOG000241471
            InParanoid:O23157 OMA:KPNRSES PhylomeDB:O23157
            ProtClustDB:CLSN2685781 Genevestigator:O23157 Uniprot:O23157
        Length = 173

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 67/175 (38%), Positives = 100/175 (57%)

Query:     6 RPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYS 65
             +P RSD     E++ K  +++R +F++LAPKR TKP RS+    +  +F+  SD   ++ 
Sbjct:     5 KPSRSDEISDPEQQIKNANQIRADFDSLAPKRPTKPTRSEPG--FPGSFS-ASDKITDHP 61

Query:    66 QFQHLQANDSQVCFHFEQKLIWNG--SEVTEEFQETEYYKDLNRINKDHHTTGTGFIKM- 122
             +    Q+  SQ   H   K++  G  S V +EF ETEYY +L  I+K HHTTG+GFI + 
Sbjct:    62 EADKFQSLQSQT--H--GKVLGEGDSSAVQDEFLETEYYSNLTAIDKQHHTTGSGFINVV 117

Query:   123 ENANGK---SFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVF-SSDKPKRSEN 173
             +  NG+   +   A   D    +  + NPATNEWIP+ ++     SS KP RSE+
Sbjct:   118 KEDNGEESEAVTAAAIGDGGEKAVYRSNPATNEWIPATEEDFDSESSSKPNRSES 172


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.126   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      173       173   0.00097  108 3  11 23  0.49    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.64u 0.24s 22.88t   Elapsed:  00:00:01
  Total cpu time:  22.64u 0.24s 22.88t   Elapsed:  00:00:01
  Start:  Thu May  9 16:19:38 2013   End:  Thu May  9 16:19:39 2013

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