BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030688
         (173 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9P3A9|YIL5_SCHPO Uncharacterized protein C1565.05 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC1565.05 PE=4 SV=1
          Length = 773

 Score = 32.0 bits (71), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 85  LIWNGSEVTEEFQETEYYKDLN--RINKDHHTTGTGFIKMENANGKSFILAPDNDDAHHS 142
           L+W  +++ EE +    Y+D++  +I   H  + TG + +   NGK   L P++D  H S
Sbjct: 104 LLWKFNDLEEESEVV--YRDISNQQIFALHFISSTGQLVIVFRNGKIAFLDPEDDKVHMS 161

Query: 143 SCKGNPAT---NEWIPS 156
           +     AT   + ++PS
Sbjct: 162 ASVNESATLLQSMYVPS 178


>sp|P0CL10|PDHR_SALTY Pyruvate dehydrogenase complex repressor OS=Salmonella typhimurium
           (strain LT2 / SGSC1412 / ATCC 700720) GN=pdhR PE=3 SV=1
          Length = 254

 Score = 31.2 bits (69), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 12  VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
           +HL R  E  +   VR+NFE L  +R   P  S + ++  +A   G       +  +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHL 225


>sp|E1W823|PDHR_SALTS Pyruvate dehydrogenase complex repressor OS=Salmonella typhimurium
           (strain SL1344) GN=pdhR PE=3 SV=1
          Length = 254

 Score = 31.2 bits (69), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 12  VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
           +HL R  E  +   VR+NFE L  +R   P  S + ++  +A   G       +  +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHL 225


>sp|P0A2S3|PDHR_SALTI Pyruvate dehydrogenase complex repressor OS=Salmonella typhi
           GN=pdhR PE=3 SV=1
          Length = 254

 Score = 31.2 bits (69), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 12  VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
           +HL R  E  +   VR+NFE L  +R   P  S + ++  +A   G       +  +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHL 225


>sp|P0ACL9|PDHR_ECOLI Pyruvate dehydrogenase complex repressor OS=Escherichia coli
           (strain K12) GN=pdhR PE=1 SV=1
          Length = 254

 Score = 31.2 bits (69), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 12  VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
           +HL R  E  +   VR+NFE L  +R   P  S + ++  +A   G       +  +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225


>sp|P0ACM0|PDHR_ECOL6 Pyruvate dehydrogenase complex repressor OS=Escherichia coli O6:H1
           (strain CFT073 / ATCC 700928 / UPEC) GN=pdhR PE=3 SV=1
          Length = 254

 Score = 31.2 bits (69), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 12  VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
           +HL R  E  +   VR+NFE L  +R   P  S + ++  +A   G       +  +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225


>sp|P0ACM1|PDHR_ECO57 Pyruvate dehydrogenase complex repressor OS=Escherichia coli
           O157:H7 GN=pdhR PE=3 SV=1
          Length = 254

 Score = 31.2 bits (69), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 12  VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
           +HL R  E  +   VR+NFE L  +R   P  S + ++  +A   G       +  +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.126    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,491,881
Number of Sequences: 539616
Number of extensions: 3033652
Number of successful extensions: 6343
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6335
Number of HSP's gapped (non-prelim): 30
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)