Query 030688
Match_columns 173
No_of_seqs 28 out of 30
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 04:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s0p_A CAP, adenylyl cyclase-a 33.3 6 0.0002 31.8 -1.0 18 102-119 148-165 (176)
2 2fcg_F Cationic, antibacterial 29.1 37 0.0013 20.1 2.2 19 19-37 5-23 (26)
3 1vl0_A DTDP-4-dehydrorhamnose 28.5 11 0.00037 28.8 -0.3 7 114-120 18-24 (292)
4 1bb1_B Designed, thermostable 23.9 38 0.0013 21.2 1.7 19 16-34 8-26 (36)
5 2lma_A THP5 peptide; CD4+, imm 22.9 26 0.00089 20.6 0.7 16 95-110 3-18 (26)
6 2kdi_A Ubiquitin, vacuolar pro 22.7 91 0.0031 22.1 3.8 28 111-138 3-30 (114)
7 2k6o_A Cathelicidin antimicrob 21.7 70 0.0024 20.3 2.6 20 17-36 15-34 (37)
8 3lay_A Zinc resistance-associa 19.8 26 0.00089 27.9 0.4 26 12-37 66-91 (175)
9 2k5n_A Putative cold-shock pro 17.9 40 0.0014 23.0 1.0 11 114-124 13-23 (74)
10 3trt_A Vimentin; cytoskeleton, 15.4 56 0.0019 21.7 1.1 17 20-36 8-24 (77)
No 1
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=33.34 E-value=6 Score=31.77 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=15.0
Q ss_pred hccccccccCccCCCccc
Q 030688 102 YKDLNRINKDHHTTGTGF 119 (173)
Q Consensus 102 YkdL~~IDKqHHTTGtGF 119 (173)
|++|-..=|+|||||--+
T Consensus 148 ~~~L~~YVK~~httGl~W 165 (176)
T 1s0p_A 148 LKDLEKYIKQYHTTGLTW 165 (176)
T ss_dssp HHHHHHHHHHHSTTSCCC
T ss_pred HHHHHHHHHHhCCCCCcc
Confidence 688888889999999544
No 2
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=29.11 E-value=37 Score=20.12 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhcCCCC
Q 030688 19 EAKMEDEVRENFENLAPKR 37 (173)
Q Consensus 19 q~~ie~evR~~Fd~~APKR 37 (173)
-.+|-..||.+|..++|+-
T Consensus 5 ~kkIgQkIkdFf~~l~prt 23 (26)
T 2fcg_F 5 FKRIVQRIKDFLRNLVPRT 23 (26)
T ss_dssp HHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHhcCccc
Confidence 3578889999999999963
No 3
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=28.52 E-value=11 Score=28.82 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=5.1
Q ss_pred CCCccce
Q 030688 114 TTGTGFI 120 (173)
Q Consensus 114 TTGtGFI 120 (173)
|-|||||
T Consensus 18 tGatG~i 24 (292)
T 1vl0_A 18 TGANGQL 24 (292)
T ss_dssp ESTTSHH
T ss_pred ECCCChH
Confidence 4578887
No 4
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=23.87 E-value=38 Score=21.16 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhhhcC
Q 030688 16 REEEAKMEDEVRENFENLA 34 (173)
Q Consensus 16 ~Eeq~~ie~evR~~Fd~~A 34 (173)
.|||+.|+++|.+-=+.+|
T Consensus 8 keeqaaieeeiqaikeeia 26 (36)
T 1bb1_B 8 KEEQAAIEEEIQAIKEEIA 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4899999999988766554
No 5
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=22.92 E-value=26 Score=20.58 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=12.6
Q ss_pred hhhhhhhhcccccccc
Q 030688 95 EFQETEYYKDLNRINK 110 (173)
Q Consensus 95 EFvETeYYkdL~~IDK 110 (173)
-|+.||||.-+.-|.-
T Consensus 3 pylqteyydvmtvisp 18 (26)
T 2lma_A 3 PYLQTEYYDVMTVISP 18 (26)
T ss_dssp TTHHHHHHTTSTTSSG
T ss_pred ccccceeeeeEEEeCC
Confidence 3788999998887753
No 6
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=22.72 E-value=91 Score=22.05 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=23.9
Q ss_pred CccCCCccceEeeecCCceeEeecCCCC
Q 030688 111 DHHTTGTGFIKMENANGKSFILAPDNDD 138 (173)
Q Consensus 111 qHHTTGtGFIKve~~~g~~f~l~~~~~~ 138 (173)
+||.-|.=+|.+..-+|+.|.|..++..
T Consensus 3 ~~~~~~~~~i~vk~l~G~~~~l~v~~~~ 30 (114)
T 2kdi_A 3 HHHHHGEFQIFAKTLTGKTITLEVESSD 30 (114)
T ss_dssp CSCCCCCCEEEEEETTCCEEEEECCTTC
T ss_pred ccccCCcEEEEEEeCCCcEEEEEECCCC
Confidence 5788899999999989999999887654
No 7
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=21.69 E-value=70 Score=20.29 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhhhcCCC
Q 030688 17 EEEAKMEDEVRENFENLAPK 36 (173)
Q Consensus 17 Eeq~~ie~evR~~Fd~~APK 36 (173)
+.-.+|-..|+.+|-.++|+
T Consensus 15 ~~~kkIgQkIKdFf~~l~pr 34 (37)
T 2k6o_A 15 KEFKRIVQRIKDFLRNLVPR 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhhCcc
Confidence 45568899999999999996
No 8
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=19.82 E-value=26 Score=27.88 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=20.6
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcCCCC
Q 030688 12 VHLSREEEAKMEDEVRENFENLAPKR 37 (173)
Q Consensus 12 ~~l~~Eeq~~ie~evR~~Fd~~APKR 37 (173)
--||+||++++.+-..+|+....|.|
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr 91 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALR 91 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999998876543
No 9
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=17.92 E-value=40 Score=23.01 Aligned_cols=11 Identities=64% Similarity=0.899 Sum_probs=8.7
Q ss_pred CCCccceEeee
Q 030688 114 TTGTGFIKMEN 124 (173)
Q Consensus 114 TTGtGFIKve~ 124 (173)
..|.|||..+.
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 46899999874
No 10
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=15.39 E-value=56 Score=21.74 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhhcCCC
Q 030688 20 AKMEDEVRENFENLAPK 36 (173)
Q Consensus 20 ~~ie~evR~~Fd~~APK 36 (173)
.+|=++||++||.+|-|
T Consensus 8 ~~il~eiRaQYE~ia~k 24 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAK 24 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46678999999999854
Done!