BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030689
MAGIRWFGQTHQSVNRRSILGSIQGTVNDGNKKTNNKTATPQFLKFAVSGVTELLRLFSS
FDKGVCRLDRVSYKQKDEILVSGIDDIVTILRSDYENAYFVTGIFTSEIYAEDCIFEDPT
IRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQIDIVFQLINISWICT

High Scoring Gene Products

Symbol, full name Information P value
AT3G04890 protein from Arabidopsis thaliana 4.4e-29
AT2G46100 protein from Arabidopsis thaliana 0.00014

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030689
        (173 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2114875 - symbol:AT3G04890 "AT3G04890" species...   323  4.4e-29   1
TAIR|locus:2062989 - symbol:AT2G46100 "AT2G46100" species...   109  0.00014   1


>TAIR|locus:2114875 [details] [associations]
            symbol:AT3G04890 "AT3G04890" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 EMBL:AC009465 InterPro:IPR018790
            Pfam:PF10184 EMBL:AK318619 IPI:IPI00892084 RefSeq:NP_001118575.1
            UniGene:At.19068 ProteinModelPortal:B3H4P9 STRING:B3H4P9
            PaxDb:B3H4P9 PRIDE:B3H4P9 EnsemblPlants:AT3G04890.2 GeneID:819649
            KEGG:ath:AT3G04890 TAIR:At3g04890 eggNOG:NOG13822
            HOGENOM:HOG000012487 OMA:NYILATW PhylomeDB:B3H4P9
            ProtClustDB:CLSN2688075 Genevestigator:B3H4P9 Uniprot:B3H4P9
        Length = 221

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 65/113 (57%), Positives = 79/113 (69%)

Query:    40 TPQFLKFAVSGVTELLRLFSSFDKGVCRLDRVSYKQKDEILVSGIDDIVTILRSDYENAY 99
             TP  LK+AVSGVTE LRL S              + K+E+    +DD++ ILRSDY N Y
Sbjct:    34 TPAVLKWAVSGVTEFLRLISGAPSSTSIATNKD-RSKNEVTAGDVDDVMGILRSDYRNFY 92

Query:   100 FVTGIFTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIKK 152
             FVTG+ TS IY++DCIFEDPTI F+GTELY RNL+LLVPF E  SI LQN++K
Sbjct:    93 FVTGVLTSAIYSDDCIFEDPTISFQGTELYERNLKLLVPFLEDASIELQNMEK 145


>TAIR|locus:2062989 [details] [associations]
            symbol:AT2G46100 "AT2G46100" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002685
            GenomeReviews:CT485783_GR InterPro:IPR018790 Pfam:PF10184
            UniGene:At.48599 UniGene:At.66444 EMBL:BT014789 EMBL:BT015018
            IPI:IPI00526559 RefSeq:NP_182134.2 ProteinModelPortal:Q6ID84
            STRING:Q6ID84 PRIDE:Q6ID84 ProMEX:Q6ID84 EnsemblPlants:AT2G46100.1
            GeneID:819218 KEGG:ath:AT2G46100 TAIR:At2g46100
            HOGENOM:HOG000240965 InParanoid:Q6ID84 OMA:ATGYTEY
            ProtClustDB:CLSN2680274 Genevestigator:Q6ID84 Uniprot:Q6ID84
        Length = 240

 Score = 109 (43.4 bits), Expect = 0.00014, P = 0.00014
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query:    87 IVTILRSDYENAYFVTGIFTSEIYAEDCIFEDPTIRFRGTELYSRN 132
             +V  ++ D++ +YFVTG  T E+Y E C F DP   F+G   + RN
Sbjct:   105 VVDSIKQDFKRSYFVTGNLTPEVYEEKCEFADPAGSFKGLARFKRN 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.141   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      173       173   0.00097  108 3  11 22  0.49    31
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.24u 0.11s 17.35t   Elapsed:  00:00:01
  Total cpu time:  17.24u 0.11s 17.35t   Elapsed:  00:00:01
  Start:  Thu May  9 16:20:00 2013   End:  Thu May  9 16:20:01 2013

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