BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030689
         (173 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
 pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
          Length = 504

 Score = 28.5 bits (62), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 77  DEILVSGIDDIVTILRSDYENAYFVTGIF-TSEIYAED 113
           +++L +G+ D V + RS  +NA  + G+F T+E    D
Sbjct: 441 EDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVAD 478


>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
           Tuberculosis At 2.8a
 pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
           Tuberculosis At 2.8a
          Length = 546

 Score = 27.7 bits (60), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 77  DEILVSGIDDIVTILRSDYENAYFVTGIF-TSEIYAED 113
           +++L +G+ D V + RS  +NA  + G+F T+E    D
Sbjct: 483 EDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVAD 520


>pdb|2W7Z|A Chain A, Structure Of The Pentapeptide Repeat Protein Efsqnr, A Dna
           Gyrase Inhibitor. Free Amines Modified By Cyclic
           Pentylation With Glutaraldehyde.
 pdb|2W7Z|B Chain B, Structure Of The Pentapeptide Repeat Protein Efsqnr, A Dna
           Gyrase Inhibitor. Free Amines Modified By Cyclic
           Pentylation With Glutaraldehyde
          Length = 214

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 15/91 (16%)

Query: 58  FSSFDKGVCRLDRVSYKQKDEILVSGIDDIVTILRSDYENAYFVTGIFTSEIYAEDCIFE 117
           F+SFD    R +   +   +   +SG    VT LR +      +TG   ++ Y  DC+FE
Sbjct: 67  FASFDCSNVRFEACDFSNVE--WLSGSFHRVTFLRCN------LTGTNFADSYLXDCLFE 118

Query: 118 D-----PTIRFRGTELYSRNLRLLV--PFFE 141
           D      + RF    L   N   LV   FFE
Sbjct: 119 DCXADYASFRFANFNLVHFNQTRLVESEFFE 149


>pdb|2HY5|A Chain A, Crystal Structure Of Dsrefh
 pdb|2HYB|A Chain A, Crystal Structure Of Hexameric Dsrefh
 pdb|2HYB|D Chain D, Crystal Structure Of Hexameric Dsrefh
 pdb|2HYB|G Chain G, Crystal Structure Of Hexameric Dsrefh
 pdb|2HYB|J Chain J, Crystal Structure Of Hexameric Dsrefh
 pdb|2HYB|M Chain M, Crystal Structure Of Hexameric Dsrefh
 pdb|2HYB|P Chain P, Crystal Structure Of Hexameric Dsrefh
          Length = 130

 Score = 26.2 bits (56), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 24  QGTVNDGNKKTNNKTATPQFLKFAVSGVTELLRLFSSFDK 63
           +G V++G    N K AT    KF +SG+ +L+      D+
Sbjct: 85  RGIVDEGEASRNGKDATNIHPKFRISGLGQLVEAAIQADR 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,977,697
Number of Sequences: 62578
Number of extensions: 194220
Number of successful extensions: 438
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 7
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)