Query 030689
Match_columns 173
No_of_seqs 116 out of 141
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:06:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10184 DUF2358: Uncharacteri 99.9 8.2E-22 1.8E-26 149.0 9.5 80 86-167 2-86 (113)
2 PF12680 SnoaL_2: SnoaL-like d 98.2 3.1E-06 6.8E-11 57.6 4.7 61 105-165 15-75 (102)
3 TIGR02096 conserved hypothetic 97.8 0.00013 2.8E-09 53.3 7.4 62 105-166 18-82 (129)
4 PF07366 SnoaL: SnoaL-like pol 97.5 0.00037 8E-09 51.4 6.7 64 104-167 17-81 (126)
5 cd00781 ketosteroid_isomerase 97.5 0.00046 1E-08 50.2 6.7 61 105-165 23-85 (122)
6 KOG4457 Uncharacterized conser 96.7 0.0076 1.6E-07 50.8 7.8 89 78-169 29-126 (202)
7 COG4319 Ketosteroid isomerase 94.1 0.21 4.5E-06 40.3 6.6 58 107-164 32-93 (137)
8 PF13474 SnoaL_3: SnoaL-like d 93.9 0.31 6.7E-06 34.4 6.6 65 101-165 13-83 (121)
9 PF14534 DUF4440: Domain of un 93.1 0.69 1.5E-05 31.6 7.1 60 105-164 19-80 (107)
10 TIGR02246 conserved hypothetic 92.9 1 2.2E-05 32.2 8.1 59 102-160 19-84 (128)
11 PF07858 LEH: Limonene-1,2-epo 92.7 0.28 6E-06 38.6 5.2 54 106-159 23-77 (125)
12 PRK08241 RNA polymerase factor 89.6 2.3 4.9E-05 36.8 8.3 78 82-161 211-292 (339)
13 TIGR02960 SigX5 RNA polymerase 85.7 4.8 0.0001 34.3 7.9 76 83-162 202-283 (324)
14 cd00531 NTF2_like Nuclear tran 84.1 4.6 0.0001 27.4 5.9 35 104-138 18-57 (124)
15 PF13577 SnoaL_4: SnoaL-like d 72.3 24 0.00052 25.0 6.9 63 104-166 26-93 (127)
16 PF02136 NTF2: Nuclear transpo 58.9 36 0.00078 24.4 5.6 48 104-153 19-68 (118)
17 KOG2546 Abl interactor ABI-1, 52.4 3.2 7E-05 39.4 -1.1 82 87-170 74-159 (483)
18 COG5485 Predicted ester cyclas 50.7 40 0.00086 27.3 5.0 46 121-166 39-84 (131)
19 PF10766 DUF2592: Protein of u 49.1 17 0.00037 24.0 2.2 19 43-61 18-36 (41)
20 PF10231 DUF2315: Uncharacteri 35.8 13 0.00028 29.5 0.1 28 5-32 3-30 (126)
21 PF12893 Lumazine_bd_2: Putati 35.5 1.7E+02 0.0037 21.2 7.2 82 84-165 3-90 (116)
22 PRK09636 RNA polymerase sigma 29.3 2.5E+02 0.0054 23.9 6.9 41 101-141 185-235 (293)
23 PHA03120 tegument protein VP22 27.3 96 0.0021 27.9 4.1 47 4-50 27-74 (310)
24 KOG4701 Chitinase [Cell wall/m 27.0 1.2E+02 0.0025 29.3 4.8 49 81-151 163-214 (568)
25 PF14322 SusD-like_3: Starch-b 25.0 1E+02 0.0022 23.3 3.5 54 37-98 106-159 (190)
26 cd00780 NTF2 Nuclear transport 24.8 2.2E+02 0.0048 20.7 5.2 45 105-151 23-68 (119)
27 PF04965 GPW_gp25: Gene 25-lik 21.7 3E+02 0.0065 19.4 5.4 75 86-165 5-87 (99)
No 1
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=99.87 E-value=8.2e-22 Score=149.04 Aligned_cols=80 Identities=33% Similarity=0.580 Sum_probs=75.7
Q ss_pred HHHHHHHHhhhhhccccccccccccccceeeeCCCCcccchHHHHHH---HHhhcc-ccCCCceEEEEEEeeCc-EEEEE
Q 030689 86 DIVTILRSDYENAYFVTGIFTSEIYAEDCIFEDPTIRFRGTELYSRN---LRLLVP-FFEYPSIGLQNIKKVRY-FLQID 160 (173)
Q Consensus 86 ~v~~~Lr~Dy~~~Yfvtg~~t~~IYa~D~~F~DPfn~F~G~dryk~~---l~~m~~-~f~~prf~L~di~~s~~-~~~lr 160 (173)
+++++||+||+++| +|+++++||++||+|+||+++|+|+++|++| +++++. +|.+++++|+++.+.++ .+.+|
T Consensus 2 ~~~~~Lr~D~~~~f--~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~r 79 (113)
T PF10184_consen 2 DVIRTLREDLPRFF--TGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRAR 79 (113)
T ss_pred hHHHHHHHHHHHHh--cCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEE
Confidence 68999999999876 9999999999999999999999999999999 999998 89999999999999986 99999
Q ss_pred EEEEeee
Q 030689 161 IVFQLIN 167 (173)
Q Consensus 161 W~F~~~~ 167 (173)
|++.+..
T Consensus 80 W~~~g~~ 86 (113)
T PF10184_consen 80 WRLRGVP 86 (113)
T ss_pred EEEEEEe
Confidence 9998753
No 2
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=98.17 E-value=3.1e-06 Score=57.60 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=57.1
Q ss_pred ccccccccceeeeCCCCcccchHHHHHHHHhhccccCCCceEEEEEEeeCcEEEEEEEEEe
Q 030689 105 FTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQIDIVFQL 165 (173)
Q Consensus 105 ~t~~IYa~D~~F~DPfn~F~G~dryk~~l~~m~~~f~~prf~L~di~~s~~~~~lrW~F~~ 165 (173)
...++|+|||.|.||+...+|.+.|+..++.+...+.+.+++++++...++.+.++|++++
T Consensus 15 ~i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v~~~~~~~~ 75 (102)
T PF12680_consen 15 AIAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDIFADGDRVVVEWTVTG 75 (102)
T ss_dssp HHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEEEEcCCEEEEEEEEEE
Confidence 3468999999999998899999999999999999999999999999999999999999986
No 3
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=97.77 E-value=0.00013 Score=53.28 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=54.5
Q ss_pred ccccccccceeeeCCCC--cccchHHHHHHHHhhccccCCCceEEEEEEeeCc-EEEEEEEEEee
Q 030689 105 FTSEIYAEDCIFEDPTI--RFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRY-FLQIDIVFQLI 166 (173)
Q Consensus 105 ~t~~IYa~D~~F~DPfn--~F~G~dryk~~l~~m~~~f~~prf~L~di~~s~~-~~~lrW~F~~~ 166 (173)
-..++|++|+.|.||.. ...|++.+++.++.++..+.+.+++++++...++ .+...|++++.
T Consensus 18 ~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~ 82 (129)
T TIGR02096 18 AVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAEWTVHGT 82 (129)
T ss_pred HHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEEEEEeee
Confidence 46789999999999975 4678999999999999999999999999887765 99999999865
No 4
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=97.52 E-value=0.00037 Score=51.39 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=59.3
Q ss_pred cccccccccceeeeCCC-CcccchHHHHHHHHhhccccCCCceEEEEEEeeCcEEEEEEEEEeee
Q 030689 104 IFTSEIYAEDCIFEDPT-IRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQIDIVFQLIN 167 (173)
Q Consensus 104 ~~t~~IYa~D~~F~DPf-n~F~G~dryk~~l~~m~~~f~~prf~L~di~~s~~~~~lrW~F~~~~ 167 (173)
+...++|+|||.+.+|. ....|++.|+..+..+...|.|.++++.++...++.+.++|++++..
T Consensus 17 ~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~gd~v~~~~~~~Gth 81 (126)
T PF07366_consen 17 DALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVVAEGDRVAVRWTFTGTH 81 (126)
T ss_dssp CHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEEEEee
Confidence 35688999999999997 78999999999999999999999999999999999999999997754
No 5
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=97.48 E-value=0.00046 Score=50.17 Aligned_cols=61 Identities=10% Similarity=-0.054 Sum_probs=46.2
Q ss_pred ccccccccceeeeCCCCc--ccchHHHHHHHHhhccccCCCceEEEEEEeeCcEEEEEEEEEe
Q 030689 105 FTSEIYAEDCIFEDPTIR--FRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQIDIVFQL 165 (173)
Q Consensus 105 ~t~~IYa~D~~F~DPfn~--F~G~dryk~~l~~m~~~f~~prf~L~di~~s~~~~~lrW~F~~ 165 (173)
...++|++||.|.||... ++|++.+++.+..+...+....+........++.+.+.|+++.
T Consensus 23 ~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (122)
T cd00781 23 GIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAKRLELTGPVRASHGGEAAFAFRVEF 85 (122)
T ss_pred HHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCceEEecCceeeecCCEEEEEEEEEE
Confidence 567999999999999654 9999999999998877655555544445555677766777653
No 6
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.0076 Score=50.82 Aligned_cols=89 Identities=13% Similarity=0.240 Sum_probs=69.6
Q ss_pred cccCCCHHHHHHHHHHhhhh-hccccccccccccccceeeeCCCCcc--cchHHHHH---HHHhhcc-ccCCCceEEEEE
Q 030689 78 EILVSGIDDIVTILRSDYEN-AYFVTGIFTSEIYAEDCIFEDPTIRF--RGTELYSR---NLRLLVP-FFEYPSIGLQNI 150 (173)
Q Consensus 78 ~~~~~~~~~v~~~Lr~Dy~~-~Yfvtg~~t~~IYa~D~~F~DPfn~F--~G~dryk~---~l~~m~~-~f~~prf~L~di 150 (173)
+..|-+.+-+-+.||+..+. | --.+.|++|++|+.|.|--.+. +|+..|.. |++.++. ++-..+|++.++
T Consensus 29 ~~~pe~L~~~yerLr~tlPklF---~~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~v 105 (202)
T KOG4457|consen 29 KPAPEQLEHVYERLRETLPKLF---RRRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSV 105 (202)
T ss_pred CCChHHHHHHHHHHHHHhHHHH---hhcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEee
Confidence 33445667788999999986 5 6789999999999999987665 58888876 4555553 577889999999
Q ss_pred Ee--eCcEEEEEEEEEeeeEE
Q 030689 151 KK--VRYFLQIDIVFQLINIS 169 (173)
Q Consensus 151 ~~--s~~~~~lrW~F~~~~~~ 169 (173)
.. .+.++.+|||+..+..-
T Consensus 106 t~h~d~~Tvr~RWRv~gvsv~ 126 (202)
T KOG4457|consen 106 TPHIDEGTVRCRWRVKGVSVT 126 (202)
T ss_pred cccCCCceEEEEEEEecceEe
Confidence 84 45789999999877643
No 7
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=94.06 E-value=0.21 Score=40.32 Aligned_cols=58 Identities=9% Similarity=0.218 Sum_probs=47.7
Q ss_pred ccccccceeeeCCC-CcccchHHHHHHHHhhcccc-CCCceEEEEEE--eeCcEEEEEEEEE
Q 030689 107 SEIYAEDCIFEDPT-IRFRGTELYSRNLRLLVPFF-EYPSIGLQNIK--KVRYFLQIDIVFQ 164 (173)
Q Consensus 107 ~~IYa~D~~F~DPf-n~F~G~dryk~~l~~m~~~f-~~prf~L~di~--~s~~~~~lrW~F~ 164 (173)
.+.|++||.|=||. -.+.|.+.|+++++-++..+ ..+.|.+.++. .+||.+|..=.++
T Consensus 32 ~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a~~~~~~~ 93 (137)
T COG4319 32 ADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVAFVTALLL 93 (137)
T ss_pred HHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEEEEEEeee
Confidence 45699999999996 89999999999999888654 46689999988 8888887654333
No 8
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=93.89 E-value=0.31 Score=34.43 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=47.6
Q ss_pred cccc--ccccccccceeeeCCC--CcccchHHHHHHHHhhccccCCCceEEEEEE--eeCcEEEEEEEEEe
Q 030689 101 VTGI--FTSEIYAEDCIFEDPT--IRFRGTELYSRNLRLLVPFFEYPSIGLQNIK--KVRYFLQIDIVFQL 165 (173)
Q Consensus 101 vtg~--~t~~IYa~D~~F~DPf--n~F~G~dryk~~l~~m~~~f~~prf~L~di~--~s~~~~~lrW~F~~ 165 (173)
-.|| .+.++|++|+.+-+|. ..++|.+.+++.++..+..+...+++..++. ..++.+++...+..
T Consensus 13 ~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~~~~~~ 83 (121)
T PF13474_consen 13 ERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSGDVAVVTGEFRL 83 (121)
T ss_dssp HCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECCCEEEEEEEEEE
Confidence 3555 6789999999998854 5678999999999887766666677666644 55677777665543
No 9
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=93.06 E-value=0.69 Score=31.58 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=43.2
Q ss_pred ccccccccceeeeCCCCcccchHHHHHHHHhhccccCCCceEEEEEEeeCcEEEE--EEEEE
Q 030689 105 FTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQI--DIVFQ 164 (173)
Q Consensus 105 ~t~~IYa~D~~F~DPfn~F~G~dryk~~l~~m~~~f~~prf~L~di~~s~~~~~l--rW~F~ 164 (173)
...++|+||+.|..|.....|++.+.+.+.....-....+++..++...++.+.+ +|+++
T Consensus 19 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~gd~a~~~~~~~~~ 80 (107)
T PF14534_consen 19 ALASLYADDFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVLGDTAVVRGRWTFT 80 (107)
T ss_dssp HHHTTEEEEEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHhhhCCCEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEECCEEEEEEEEEEE
Confidence 5689999999999999989999999988876443334445556666666766544 44444
No 10
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=92.85 E-value=1 Score=32.23 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=39.8
Q ss_pred ccc--ccccccccceeeeC-CCCcccchHHHHHHHHhhccccCC---CceEEEEEEeeC-cEEEEE
Q 030689 102 TGI--FTSEIYAEDCIFED-PTIRFRGTELYSRNLRLLVPFFEY---PSIGLQNIKKVR-YFLQID 160 (173)
Q Consensus 102 tg~--~t~~IYa~D~~F~D-Pfn~F~G~dryk~~l~~m~~~f~~---prf~L~di~~s~-~~~~lr 160 (173)
.|| ...++|++|+.|.+ |...++|.+.++..++.+...+.. ..++..++...+ +.+...
T Consensus 19 ~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~~ 84 (128)
T TIGR02246 19 AGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIVH 84 (128)
T ss_pred cCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEEE
Confidence 555 47899999999984 445689999999998766554433 245555665444 455444
No 11
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=92.66 E-value=0.28 Score=38.59 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=46.4
Q ss_pred cccccccc-eeeeCCCCcccchHHHHHHHHhhccccCCCceEEEEEEeeCcEEEE
Q 030689 106 TSEIYAED-CIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQI 159 (173)
Q Consensus 106 t~~IYa~D-~~F~DPfn~F~G~dryk~~l~~m~~~f~~prf~L~di~~s~~~~~l 159 (173)
...++++| +|..-|+-..+|+++.++.++.|..-+....+++|++...|+.+++
T Consensus 23 ~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaadg~~Vlt 77 (125)
T PF07858_consen 23 LASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAADGDVVLT 77 (125)
T ss_dssp HHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEEETTEEEE
T ss_pred HHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEeecCCEEEE
Confidence 34677899 9999999999999999999999977777788999999998866544
No 12
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=89.56 E-value=2.3 Score=36.78 Aligned_cols=78 Identities=12% Similarity=0.002 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHhhhhhccccccc--cccccccceeeeCCCCc--ccchHHHHHHHHhhccccCCCceEEEEEEeeCcEE
Q 030689 82 SGIDDIVTILRSDYENAYFVTGIF--TSEIYAEDCIFEDPTIR--FRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFL 157 (173)
Q Consensus 82 ~~~~~v~~~Lr~Dy~~~Yfvtg~~--t~~IYa~D~~F~DPfn~--F~G~dryk~~l~~m~~~f~~prf~L~di~~s~~~~ 157 (173)
...+...+++++=|+.+ -.||+ ..++++|||.+.+|... ++|.+.+...+..+......+.+.+..+...|+.+
T Consensus 211 ~~~~~~~~~v~~~~~A~--~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~v 288 (339)
T PRK08241 211 PDDPEERALLARYVAAF--EAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPTRANGQPA 288 (339)
T ss_pred CCChHHHHHHHHHHHHH--hcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEeecCCCeE
Confidence 44566677777766652 26774 56799999999999877 99999999998887544333445555555556666
Q ss_pred EEEE
Q 030689 158 QIDI 161 (173)
Q Consensus 158 ~lrW 161 (173)
.+.+
T Consensus 289 ~~~~ 292 (339)
T PRK08241 289 FAQY 292 (339)
T ss_pred EEEE
Confidence 6543
No 13
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=85.71 E-value=4.8 Score=34.32 Aligned_cols=76 Identities=11% Similarity=0.005 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHhhhhhccccccc--cccccccceeeeCCCCc--ccchHHHHHHHHhh--ccccCCCceEEEEEEeeCcE
Q 030689 83 GIDDIVTILRSDYENAYFVTGIF--TSEIYAEDCIFEDPTIR--FRGTELYSRNLRLL--VPFFEYPSIGLQNIKKVRYF 156 (173)
Q Consensus 83 ~~~~v~~~Lr~Dy~~~Yfvtg~~--t~~IYa~D~~F~DPfn~--F~G~dryk~~l~~m--~~~f~~prf~L~di~~s~~~ 156 (173)
..+...++|++=|+.+ -.||+ ..++++|||.|.+|... +.|.+.+...+..+ ...+. .+.+.-+...|+.
T Consensus 202 ~~~~~~~~v~~~~~a~--~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 277 (324)
T TIGR02960 202 PSPEEQDLLERYIAAF--ESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGAA--GMRLLPTIANGQP 277 (324)
T ss_pred CCHHHHHHHHHHHHHH--HcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccCC--ceeEEEeeecCCc
Confidence 3345556666655542 37774 66899999999999744 99999999888887 44444 4444445566777
Q ss_pred EEEEEE
Q 030689 157 LQIDIV 162 (173)
Q Consensus 157 ~~lrW~ 162 (173)
+.+.|.
T Consensus 278 ~~v~~~ 283 (324)
T TIGR02960 278 AAAMYM 283 (324)
T ss_pred eEEEEE
Confidence 777664
No 14
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=84.10 E-value=4.6 Score=27.39 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=30.0
Q ss_pred cccccccccceeeeCCC-----CcccchHHHHHHHHhhcc
Q 030689 104 IFTSEIYAEDCIFEDPT-----IRFRGTELYSRNLRLLVP 138 (173)
Q Consensus 104 ~~t~~IYa~D~~F~DPf-----n~F~G~dryk~~l~~m~~ 138 (173)
+.+..+|++|++|..|. ..+.|++.++..++.+..
T Consensus 18 ~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~ 57 (124)
T cd00531 18 EWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPF 57 (124)
T ss_pred HHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCC
Confidence 35778999999999998 688999999999888764
No 15
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=72.32 E-value=24 Score=24.99 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=43.3
Q ss_pred cccccccccceeeeCCC---CcccchHHHHHHHHhhccccCCCce--EEEEEEeeCcEEEEEEEEEee
Q 030689 104 IFTSEIYAEDCIFEDPT---IRFRGTELYSRNLRLLVPFFEYPSI--GLQNIKKVRYFLQIDIVFQLI 166 (173)
Q Consensus 104 ~~t~~IYa~D~~F~DPf---n~F~G~dryk~~l~~m~~~f~~prf--~L~di~~s~~~~~lrW~F~~~ 166 (173)
+...++|++|+.|.=|- ..++|.+.+.+++.....-.....- .-+.|...++.+..+|.+...
T Consensus 26 ~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dgd~A~~~~~~~~~ 93 (127)
T PF13577_consen 26 EEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDGDTATVRSYVLAT 93 (127)
T ss_dssp HHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcCCEEEEEEEEEEE
Confidence 46689999999997774 5899999999998886532221111 111234467889888887754
No 16
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=58.89 E-value=36 Score=24.37 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=37.2
Q ss_pred cccccccccceeeeCCCCc--ccchHHHHHHHHhhccccCCCceEEEEEEee
Q 030689 104 IFTSEIYAEDCIFEDPTIR--FRGTELYSRNLRLLVPFFEYPSIGLQNIKKV 153 (173)
Q Consensus 104 ~~t~~IYa~D~~F~DPfn~--F~G~dryk~~l~~m~~~f~~prf~L~di~~s 153 (173)
+.+..+|++|+.+.++... +.|.+.+.+.+..|-..- .++.+.++.-+
T Consensus 19 ~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~--~~~~i~~~d~q 68 (118)
T PF02136_consen 19 EGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATG--VQHRITSVDCQ 68 (118)
T ss_dssp GGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSS--EEEEEEEEEEE
T ss_pred HHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcc--cEEEecccccc
Confidence 3578899999999998887 999999999988887543 26666666544
No 17
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=52.36 E-value=3.2 Score=39.44 Aligned_cols=82 Identities=11% Similarity=0.008 Sum_probs=59.7
Q ss_pred HHHHHHHhhhhhccccccccccccccceeeeCCCCcccchHHHHHHHHhhcc----ccCCCceEEEEEEeeCcEEEEEEE
Q 030689 87 IVTILRSDYENAYFVTGIFTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVP----FFEYPSIGLQNIKKVRYFLQIDIV 162 (173)
Q Consensus 87 v~~~Lr~Dy~~~Yfvtg~~t~~IYa~D~~F~DPfn~F~G~dryk~~l~~m~~----~f~~prf~L~di~~s~~~~~lrW~ 162 (173)
+++.|+...+.-. --...-++|+.+|.|.++.+.++++..|+.|....-. ++.++...+.-+.+-=+...++|.
T Consensus 74 ~l~mL~lQ~~~L~--~mEs~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkPid~~mLd~i 151 (483)
T KOG2546|consen 74 ALRMLDLQAPQLR--YMESQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKPIDYSMLDDI 151 (483)
T ss_pred HHHHHHHHHHHHH--HHHhhhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceeccccceeeecc
Confidence 4444444443211 2233457899999999999999999999998543221 456777778888877789999999
Q ss_pred EEeeeEEe
Q 030689 163 FQLINISW 170 (173)
Q Consensus 163 F~~~~~~~ 170 (173)
-|.|--+|
T Consensus 152 gHGIr~~~ 159 (483)
T KOG2546|consen 152 GHGIRGSW 159 (483)
T ss_pred cccccccc
Confidence 99998777
No 18
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=50.66 E-value=40 Score=27.28 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=40.8
Q ss_pred CcccchHHHHHHHHhhccccCCCceEEEEEEeeCcEEEEEEEEEee
Q 030689 121 IRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQIDIVFQLI 166 (173)
Q Consensus 121 n~F~G~dryk~~l~~m~~~f~~prf~L~di~~s~~~~~lrW~F~~~ 166 (173)
..-.|++-|+.|+-.+++-+.+-+|++...-..++.+-.|=.|.|-
T Consensus 39 g~~~glsgyr~ml~~df~aiPdl~f~ie~lvae~~~vaarl~Fdct 84 (131)
T COG5485 39 GRLQGLSGYREMLVRDFSAIPDLSFEIERLVAEGDRVAARLTFDCT 84 (131)
T ss_pred CceechHHHHHHHHhhHhhCCCcceEEEEEeecCCceEEEEEEccC
Confidence 4567999999999999999999999999999888888888888753
No 19
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=49.10 E-value=17 Score=23.98 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.7
Q ss_pred hhhhhhhhHHHHHHHhhcC
Q 030689 43 FLKFAVSGVTELLRLFSSF 61 (173)
Q Consensus 43 ~~K~av~gvTell~~~~s~ 61 (173)
+.-++.||+-|++|++|-.
T Consensus 18 ~ilglIyGlGevfN~iS~~ 36 (41)
T PF10766_consen 18 LILGLIYGLGEVFNLISKI 36 (41)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999854
No 20
>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans. Their function is not known.
Probab=35.78 E-value=13 Score=29.54 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=20.0
Q ss_pred eeccccCCCCCCcceeeeccccccCCCc
Q 030689 5 RWFGQTHQSVNRRSILGSIQGTVNDGNK 32 (173)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 32 (173)
-|+|.||..+|.|+|.-.+-..+++-|+
T Consensus 3 d~igPPd~~SNlRpi~~~~~~nEt~lE~ 30 (126)
T PF10231_consen 3 DWIGPPDPVSNLRPIIFHIPENETPLER 30 (126)
T ss_pred CCcCCCCccCCcceeeccCCCCCCHHHH
Confidence 5999999999999976655333333333
No 21
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=35.54 E-value=1.7e+02 Score=21.19 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhhhccccccccccccccceee---eCCCCcccchHHHHHHHHhh---ccccCCCceEEEEEEeeCcEE
Q 030689 84 IDDIVTILRSDYENAYFVTGIFTSEIYAEDCIF---EDPTIRFRGTELYSRNLRLL---VPFFEYPSIGLQNIKKVRYFL 157 (173)
Q Consensus 84 ~~~v~~~Lr~Dy~~~Yfvtg~~t~~IYa~D~~F---~DPfn~F~G~dryk~~l~~m---~~~f~~prf~L~di~~s~~~~ 157 (173)
.++|.++|..=++..|-=-...+.++|.||+.. .+.-.....++.|.+.++.- .....+....+..|...++.+
T Consensus 3 ~~~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g~~A 82 (116)
T PF12893_consen 3 EAAIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDGDVA 82 (116)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEECCEE
Confidence 355667776633544322333788999999965 23336677889999988875 345667778889999998876
Q ss_pred EEEEEEEe
Q 030689 158 QIDIVFQL 165 (173)
Q Consensus 158 ~lrW~F~~ 165 (173)
.++=++.+
T Consensus 83 ~a~v~~~~ 90 (116)
T PF12893_consen 83 SAKVEYEF 90 (116)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 66555543
No 22
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=29.25 E-value=2.5e+02 Score=23.88 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=31.8
Q ss_pred cccc--ccccccccceeee-CCC-------CcccchHHHHHHHHhhccccC
Q 030689 101 VTGI--FTSEIYAEDCIFE-DPT-------IRFRGTELYSRNLRLLVPFFE 141 (173)
Q Consensus 101 vtg~--~t~~IYa~D~~F~-DPf-------n~F~G~dryk~~l~~m~~~f~ 141 (173)
-.|| -+.++++|||.|. |.- ..+.|.++..+.+..+...+.
T Consensus 185 ~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~ 235 (293)
T PRK09636 185 ASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYG 235 (293)
T ss_pred HhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhcc
Confidence 3677 6789999999998 653 346899999998888776543
No 23
>PHA03120 tegument protein VP22; Provisional
Probab=27.33 E-value=96 Score=27.92 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=27.5
Q ss_pred ceeccccCCCCCCcc-eeeeccccccCCCcccCCCCCCchhhhhhhhh
Q 030689 4 IRWFGQTHQSVNRRS-ILGSIQGTVNDGNKKTNNKTATPQFLKFAVSG 50 (173)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~K~av~g 50 (173)
+-+-||+.-++.||| ||+--|..+|.----+--..++|+++-+-.|+
T Consensus 27 vpy~g~~r~pv~rrsvvvg~pddsddslgyi~tv~~~sp~~~y~d~~~ 74 (310)
T PHA03120 27 VPYSGKPRNPVARRSVVVGFPDDSDDSLGYIATVEADSPPLFYADLSF 74 (310)
T ss_pred ccccCCcCCCccccceeecCCCCCccccceeeeeccCCCCceeecccc
Confidence 346799999999999 55554544443322222334466665554444
No 24
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=27.02 E-value=1.2e+02 Score=29.34 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHhhh---hhccccccccccccccceeeeCCCCcccchHHHHHHHHhhccccCCCceEEEEEE
Q 030689 81 VSGIDDIVTILRSDYE---NAYFVTGIFTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIK 151 (173)
Q Consensus 81 ~~~~~~v~~~Lr~Dy~---~~Yfvtg~~t~~IYa~D~~F~DPfn~F~G~dryk~~l~~m~~~f~~prf~L~di~ 151 (173)
+.--.++...|+.-|. |.||+++ +|.|-|.|- .|+..+.+-+|+..-|+
T Consensus 163 ~~~ysaLA~~L~~~Fa~~~r~yYLsa-------APQCP~PD~---------------~~G~aL~~~~fDf~~IQ 214 (568)
T KOG4701|consen 163 NTAYSALAKRLLEIFASDPRRYYLSA-------APQCPVPDH---------------TLGKALSENSFDFLSIQ 214 (568)
T ss_pred cchHHHHHHHHHHHHccCCceEEecc-------CCCCCCCch---------------hhhhhhhccccceEEEE
Confidence 3445788999988884 7999998 899999983 36777888888777664
No 25
>PF14322 SusD-like_3: Starch-binding associating with outer membrane; PDB: 3NQP_B 3SNX_A 3I4G_A 3HDX_A 3IHV_A 3JQ0_A 3MCX_A 3QNK_C 3MYV_B 3IV0_A ....
Probab=25.03 E-value=1e+02 Score=23.33 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=34.0
Q ss_pred CCCCchhhhhhhhhHHHHHHHhhcCCCCCcccccccccccccccCCCHHHHHHHHHHhhhhh
Q 030689 37 KTATPQFLKFAVSGVTELLRLFSSFDKGVCRLDRVSYKQKDEILVSGIDDIVTILRSDYENA 98 (173)
Q Consensus 37 ~~~~~~~~K~av~gvTell~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Lr~Dy~~~ 98 (173)
+..---++||..| -.|++.||.+|--.++. .....+..+++++.+.|.+|++..
T Consensus 106 ~~aea~~lRA~~y--f~L~~~yg~vP~~~~~~------~~~~~~r~t~~ev~~~I~~dL~~A 159 (190)
T PF14322_consen 106 YLAEAYFLRAYYY--FQLVRLYGDVPYITEPD------SEENLPRSTREEVYDFIIADLDEA 159 (190)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHSSBBGGGTTT------TTSS--EBEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHhCCCeeecCCC------CccCCCCCCHHHHHHHHHHHHHHH
Confidence 3334456666666 48888888654433111 123456788999999999999753
No 26
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=24.79 E-value=2.2e+02 Score=20.74 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=34.6
Q ss_pred ccccccccceeeeCCC-CcccchHHHHHHHHhhccccCCCceEEEEEE
Q 030689 105 FTSEIYAEDCIFEDPT-IRFRGTELYSRNLRLLVPFFEYPSIGLQNIK 151 (173)
Q Consensus 105 ~t~~IYa~D~~F~DPf-n~F~G~dryk~~l~~m~~~f~~prf~L~di~ 151 (173)
.+..+|.++..|.=+- +...|.+.+...+..|-. .....++.++.
T Consensus 23 ~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp~--~~~~~~i~~~d 68 (119)
T cd00780 23 GLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLPF--QKTKHKITTVD 68 (119)
T ss_pred HHHhhcCCCcEEEECCceEecCHHHHHHHHHhCCC--cceEEEEEEEe
Confidence 4578899999999888 899999999999887764 24455555543
No 27
>PF04965 GPW_gp25: Gene 25-like lysozyme; InterPro: IPR007048 The family of sequences represented by this entry include proteins from Bacteriophage T4 and related phage, which may be structural components of the outer wedge of the baseplate that has acidic lysozyme activity [, ]. They also include anti-adapter protein IraD, from bacteria, that inhibit RpoS proteolysis by regulating RssB activity [].; PDB: 2IA7_A.
Probab=21.66 E-value=3e+02 Score=19.42 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=34.4
Q ss_pred HHHHHHHHhhh-----hhccccccccccccccceeeeCCCCcccchHHHHHHHHhhccccCCCceEEEEEEeeC---cEE
Q 030689 86 DIVTILRSDYE-----NAYFVTGIFTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVR---YFL 157 (173)
Q Consensus 86 ~v~~~Lr~Dy~-----~~Yfvtg~~t~~IYa~D~~F~DPfn~F~G~dryk~~l~~m~~~f~~prf~L~di~~s~---~~~ 157 (173)
+..+.|+++.+ +..-...+..+.+ +|..|..- +-.-...+++.+...-..| +||+.+.++.-.. +..
T Consensus 5 ~~~~~I~q~l~~lL~Tr~g~~~~~~~yGl--~d~~~~~~--~~~~~~~i~~~I~~aI~~~-EPRl~~~~V~~~~~~~~~~ 79 (99)
T PF04965_consen 5 SLRESIRQSLEMLLNTRPGERPSRPDYGL--PDLIFEPI--SPDTRQAIRREIREAIQRF-EPRLKVVSVEVEEDDDEDG 79 (99)
T ss_dssp -HHHHHHHHHHHHHT--TTSSTT-TT-SG--GG---S-----HHHHHHHHHHHHHHHHHH--TTEEEEEEEEE-TTGGGT
T ss_pred hHHHHHHHHHHHHHCCCCCccccCcccCC--hhHcCCCC--CHHHHHHHHHHHHHHHHHh-CCcEEEEEEEEEecCCCCC
Confidence 34444555543 2333344445552 34444332 3333455555555544433 8999999988665 455
Q ss_pred EEEEEEEe
Q 030689 158 QIDIVFQL 165 (173)
Q Consensus 158 ~lrW~F~~ 165 (173)
.+.++.++
T Consensus 80 ~l~~~I~~ 87 (99)
T PF04965_consen 80 KLTFTISG 87 (99)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 66665554
Done!