BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030690
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP + S+VVD ++GK + S +RTS+G + + E
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
+I IEKR++ + +P+EN E +QVL
Sbjct: 85 DS--VISKIEKRVAQVTMIPLENHEGLQVLH 113
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP + S+VVD ++GK + S +RTS+G + + E
Sbjct: 17 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 76
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
+I IEKR++ + +P+EN E +QVL
Sbjct: 77 DS--VISKIEKRVAQVTMIPLENHEGLQVLH 105
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP + S+VVD ++GK + S +RTS+G + + E
Sbjct: 16 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 75
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
+I IEKR++ + +P+EN E +QVL
Sbjct: 76 DS--VISKIEKRVAQVTMIPLENHEGLQVLH 104
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP S+VVD ++GK + S +RTS+G + + E
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
+I IEKR++ + +P+EN E +QVL
Sbjct: 85 DS--VISKIEKRVAQVTXIPLENHEGLQVLH 113
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
P I+VL N LS EECD L +++ L S V ++ +++RTSSG FL E
Sbjct: 39 PLIVVLGNVLSDEECDELIELSKSKLARSKVGSSRD----VNDIRTSSGAFLDDNE---- 90
Query: 147 MIQAIEKRISVFSQVPVENGELIQVL 172
+ IEKRIS VP +GE + +L
Sbjct: 91 LTAKIEKRISSIXNVPASHGEGLHIL 116
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 63 FWDNDKEAELLRLGYVKPEVISWSPR---ILVLHNFLS 97
F D+D+E E R GY+K E+ S + ++V+ F+S
Sbjct: 346 FLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVS 383
>pdb|3NN3|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
Length = 241
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 63 FWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTK- 121
+WD E+ ++ + VK V WS +ILV ++L D+ + R H T+ DT+
Sbjct: 28 WWDLPGESRVISVAEVKGLVEQWSGKILV-ESYLLRGLSDHADLMFRVH--ARTLSDTQQ 84
Query: 122 ---TGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENG 166
G + +SG L KK + + + QV E+G
Sbjct: 85 FLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESG 132
>pdb|3NN1|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN2|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
Length = 241
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 63 FWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTK- 121
+WD E+ ++ + VK V WS +ILV ++L D+ + R H T+ DT+
Sbjct: 28 WWDLPGESRVISVAEVKGLVEQWSGKILV-ESYLLRGLSDHADLMFRVH--ARTLSDTQQ 84
Query: 122 ---TGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENG 166
G + +SG L KK + + + QV E+G
Sbjct: 85 FLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESG 132
>pdb|3NN4|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
Length = 241
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 63 FWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTK- 121
+WD E+ ++ + VK V WS +ILV ++L D+ + R H T+ DT+
Sbjct: 28 WWDLPGESRVISVAEVKGLVEQWSGKILV-ESYLLRGLSDHADLMFRVH--ARTLSDTQQ 84
Query: 122 ---TGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENG 166
G + +SG L KK + + + QV E+G
Sbjct: 85 FLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESG 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,972,642
Number of Sequences: 62578
Number of extensions: 194306
Number of successful extensions: 347
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 11
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)