Query 030690
Match_columns 173
No_of_seqs 175 out of 777
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1591 Prolyl 4-hydroxylase a 100.0 1.3E-31 2.8E-36 229.4 9.1 121 49-173 49-182 (289)
2 PLN00052 prolyl 4-hydroxylase; 99.9 6.5E-25 1.4E-29 189.8 11.0 98 74-173 41-138 (310)
3 smart00702 P4Hc Prolyl 4-hydro 99.4 2.8E-13 6E-18 107.0 8.0 86 87-173 1-89 (178)
4 PRK05467 Fe(II)-dependent oxyg 89.2 0.74 1.6E-05 38.6 4.9 62 89-159 2-64 (226)
5 PF06364 DUF1068: Protein of u 39.5 46 0.001 26.9 3.8 31 7-37 8-38 (176)
6 PHA02708 hypothetical protein; 39.1 32 0.0007 26.7 2.8 29 5-33 2-37 (148)
7 PF01448 ELM2: ELM2 domain; I 38.3 35 0.00076 21.7 2.5 27 80-111 28-54 (55)
8 PF11406 Tachystatin_A: Antimi 35.2 38 0.00083 20.8 2.1 19 56-74 22-40 (44)
9 PF06624 RAMP4: Ribosome assoc 35.1 20 0.00043 24.3 1.0 22 5-29 36-57 (63)
10 PF13532 2OG-FeII_Oxy_2: 2OG-F 33.0 46 0.001 25.8 2.9 21 89-109 2-22 (194)
11 PF06522 B12D: NADH-ubiquinone 30.7 40 0.00086 23.1 1.9 17 10-26 6-22 (73)
12 cd08788 CARD_NOD2_2_CARD15 Cas 29.4 22 0.00049 25.3 0.5 15 92-106 25-39 (81)
13 KOG3959 2-Oxoglutarate- and ir 28.5 63 0.0014 27.9 3.1 69 86-161 71-146 (306)
14 PF05721 PhyH: Phytanoyl-CoA d 27.8 69 0.0015 24.1 3.1 21 90-110 7-27 (211)
15 PF07894 DUF1669: Protein of u 26.4 72 0.0016 27.8 3.2 19 92-110 47-65 (284)
16 PF02529 PetG: Cytochrome B6-F 26.2 89 0.0019 19.0 2.6 23 7-29 7-29 (37)
17 PF14089 KbaA: KinB-signalling 25.7 1E+02 0.0022 25.1 3.8 29 7-35 27-55 (180)
18 KOG3491 Predicted membrane pro 25.1 1E+02 0.0022 20.8 3.0 19 4-22 35-53 (65)
19 KOG3200 Uncharacterized conser 21.7 1.2E+02 0.0026 25.1 3.4 28 82-109 7-34 (224)
20 smart00806 AIP3 Actin interact 21.4 76 0.0017 29.2 2.5 22 25-46 20-42 (426)
21 PF12646 DUF3783: Domain of un 20.1 1.4E+02 0.0031 19.3 3.0 23 87-110 1-23 (58)
No 1
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=229.40 Aligned_cols=121 Identities=46% Similarity=0.707 Sum_probs=108.7
Q ss_pred ccccccccCCCc------------cEEEeCCCCCceeeecccceEEeccCCcEEEEcccCCHHHHHHHHHHhcCCCcccE
Q 030690 49 RQKNGYLQLPRG------------VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVST 116 (173)
Q Consensus 49 ~~~~~y~~lcrg------------l~C~y~~~~~pfL~LaPlK~E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p~L~rS~ 116 (173)
.++..|+..|+| +.|+|... ||++++|+|+|++||+|++++||||||++||++|+.+|+|+|++++
T Consensus 49 ~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~--~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~st 126 (289)
T KOG1591|consen 49 QEFTVYEQGCRGELPPLTKLTLRRLSCRNRAG--PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERST 126 (289)
T ss_pred ccccchhhhccCccCccchhHhhhhhcccccC--cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhcee
Confidence 566778888887 45555433 9999999999999999999999999999999999999999999999
Q ss_pred ee-eCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHHhcCCCCCCCccccccC
Q 030690 117 VV-DTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173 (173)
Q Consensus 117 V~-~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIadlTGL~~~~aE~LQVlr 173 (173)
|. +.++|....+.+|+|+++||..+. ++++++|++||+++||+|.+++|+|||+|
T Consensus 127 v~~~~~~~~~~~~~~R~S~~t~l~~~~--~~~~~~i~~ri~~~T~l~~e~~E~lqVln 182 (289)
T KOG1591|consen 127 VVADKGTGHSTTSAVRTSSGTFLPDGA--SPVVSRIEQRIADLTGLPVENGESLQVLN 182 (289)
T ss_pred eeccCCcccccceeeEecceeEecCCC--CHHHHHHHHHHHhccCCCcccCccceEEE
Confidence 94 556677777889999999999954 89999999999999999999999999987
No 2
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.92 E-value=6.5e-25 Score=189.81 Aligned_cols=98 Identities=45% Similarity=0.739 Sum_probs=92.8
Q ss_pred eecccceEEeccCCcEEEEcccCCHHHHHHHHHHhcCCCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHH
Q 030690 74 RLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEK 153 (173)
Q Consensus 74 ~LaPlK~E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~ 153 (173)
.+.|.|+|+|||+|+|++||||||++||++||++|++++++|+|++..+|+...+++|||+++||...+ +|++++|++
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~--dpvv~~I~~ 118 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ--DPVVSRIEE 118 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCC--CHHHHHHHH
Confidence 358999999999999999999999999999999999999999999888888888899999999998765 899999999
Q ss_pred HHHHhcCCCCCCCccccccC
Q 030690 154 RISVFSQVPVENGELIQVLR 173 (173)
Q Consensus 154 RIadlTGL~~~~aE~LQVlr 173 (173)
||+++||+|.+++|+|||+|
T Consensus 119 Ria~~t~lp~~~~E~lQVlr 138 (310)
T PLN00052 119 RIAAWTFLPEENAENIQILR 138 (310)
T ss_pred HHHHHhCCCcccCcceEEEe
Confidence 99999999999999999986
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.45 E-value=2.8e-13 Score=107.05 Aligned_cols=86 Identities=30% Similarity=0.359 Sum_probs=75.7
Q ss_pred CcEEEEcccCCHHHHHHHHHHhcCCCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHHhcCCC---C
Q 030690 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVP---V 163 (173)
Q Consensus 87 P~Iv~~hdfLsd~E~e~Li~la~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIadlTGL~---~ 163 (173)
|.|+++|||||++||+.|++++++.+.++.+.+..++....+++|+|+.+|+...+ .++++++|.+||+++++++ .
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~-~~~~~~~l~~~i~~~~~~~~~~~ 79 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLK-GDLVIERIRQRLADFLGLLRGLP 79 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCC-CCHHHHHHHHHHHHHHCCCchhh
Confidence 89999999999999999999999999999988765443356789999999998763 2699999999999999998 7
Q ss_pred CCCccccccC
Q 030690 164 ENGELIQVLR 173 (173)
Q Consensus 164 ~~aE~LQVlr 173 (173)
.+.|.+|++|
T Consensus 80 ~~~~~~~~~~ 89 (178)
T smart00702 80 LSAEDAQVAR 89 (178)
T ss_pred ccCcceEEEE
Confidence 8999999875
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=89.21 E-value=0.74 Score=38.56 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=38.0
Q ss_pred EEEEcccCCHHHHHHHHHHhcC-CCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHHhc
Q 030690 89 ILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS 159 (173)
Q Consensus 89 Iv~~hdfLsd~E~e~Li~la~p-~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIadlT 159 (173)
|+.++||||++||+++++.... .+....+. .| ...+.+|.... +..+ ++..+.|.+||....
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~t---aG-~~~~~vKnN~q--l~~d---~~~a~~l~~~i~~~L 64 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVT---AG-AQAAQVKNNQQ--LPED---SPLARELGNLILDAL 64 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcC---cC-ccchhcccccc--cCCC---CHHHHHHHHHHHHHH
Confidence 6789999999999999997763 33222221 11 11234454322 2333 588888888888654
No 5
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=39.55 E-value=46 Score=26.94 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030690 7 MKIVFGLLTFVTFGMIIGALFQLAFIRKLED 37 (173)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (173)
.|.+++|+++..+|-|.||.+=--|.+.+..
T Consensus 8 lr~~l~llal~~a~yivGP~LYWh~~~~~~~ 38 (176)
T PF06364_consen 8 LRVVLVLLALCLAGYIVGPPLYWHLSEGLAA 38 (176)
T ss_pred HHHHHHHHHHHHHhheeCchHHHHHHHhhhc
Confidence 7999999999999999999998888877754
No 6
>PHA02708 hypothetical protein; Provisional
Probab=39.14 E-value=32 Score=26.74 Aligned_cols=29 Identities=41% Similarity=0.818 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 030690 5 PSMKIVFGLLTFVTFGMIIGALF-------QLAFIR 33 (173)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 33 (173)
|+.|.++|-+.||.+|...|+++ -.||++
T Consensus 2 pslRRLl~alalvalgfalgalfrpaap~lPaA~~E 37 (148)
T PHA02708 2 PSLRRLLAALALVALGFALGALFRPAAPALPAAFIE 37 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCCCCcCcchHHhc
Confidence 67899999999999999999885 466764
No 7
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=38.34 E-value=35 Score=21.68 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=22.3
Q ss_pred eEEeccCCcEEEEcccCCHHHHHHHHHHhcCC
Q 030690 80 PEVISWSPRILVLHNFLSMEECDYLRAIARPH 111 (173)
Q Consensus 80 ~E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p~ 111 (173)
-|++=|+| ++.+++.+++..+.+|+.+
T Consensus 28 ~e~lvW~P-----~~~~~d~~l~~yl~~A~s~ 54 (55)
T PF01448_consen 28 EEELVWSP-----NNPLSDRKLEEYLKVAKSS 54 (55)
T ss_pred cceEeECC-----CCCCCHHHHHHHHHHHHhc
Confidence 56677899 5899999999999998753
No 8
>PF11406 Tachystatin_A: Antimicrobial peptide tachystatin A; InterPro: IPR022717 Tachystatin A contains a cysteine-stabilised triple-stranded beta-sheet and shows features common to membrane-interactive peptides. Tachystatin A is thought to have an antimicrobial activity similar to defensins.Tachystatin A is also a chitin-binding peptide []. ; PDB: 1CIX_A.
Probab=35.16 E-value=38 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=10.0
Q ss_pred cCCCccEEEeCCCCCceee
Q 030690 56 QLPRGVTFWDNDKEAELLR 74 (173)
Q Consensus 56 ~lcrgl~C~y~~~~~pfL~ 74 (173)
..||||.|+-+..++.+=+
T Consensus 22 pccrgltcrsyfpgstygr 40 (44)
T PF11406_consen 22 PCCRGLTCRSYFPGSTYGR 40 (44)
T ss_dssp ---TT-EEEESSTT-S-EE
T ss_pred cccCCceeeeecCCcccce
Confidence 4699999998776665543
No 9
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=35.13 E-value=20 Score=24.26 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=16.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q 030690 5 PSMKIVFGLLTFVTFGMIIGALFQL 29 (173)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (173)
|--.+++||+.||-+|- +++|+
T Consensus 36 pVgp~~L~l~iFVV~Gs---~ifqi 57 (63)
T PF06624_consen 36 PVGPWLLGLFIFVVCGS---AIFQI 57 (63)
T ss_pred CcCHHHHhhhheeeEcH---HHHHH
Confidence 45578899999998875 55554
No 10
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=33.03 E-value=46 Score=25.82 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=17.4
Q ss_pred EEEEcccCCHHHHHHHHHHhc
Q 030690 89 ILVLHNFLSMEECDYLRAIAR 109 (173)
Q Consensus 89 Iv~~hdfLsd~E~e~Li~la~ 109 (173)
+++++||||++|...|.+...
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~ 22 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELR 22 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHH
Confidence 578999999999999988776
No 11
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=30.66 E-value=40 Score=23.12 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030690 10 VFGLLTFVTFGMIIGAL 26 (173)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (173)
|++|+.+|++|+..+..
T Consensus 6 l~PL~~~vg~a~~~a~~ 22 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATF 22 (73)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 68899999988776554
No 12
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=29.44 E-value=22 Score=25.31 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=13.0
Q ss_pred EcccCCHHHHHHHHH
Q 030690 92 LHNFLSMEECDYLRA 106 (173)
Q Consensus 92 ~hdfLsd~E~e~Li~ 106 (173)
=++|+|++|||.|+.
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 478999999999875
No 13
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=28.45 E-value=63 Score=27.88 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=41.9
Q ss_pred CCcEEEEcccCCHHHHHHHHHHhcC---CCcccE----eeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHHh
Q 030690 86 SPRILVLHNFLSMEECDYLRAIARP---HLQVST----VVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVF 158 (173)
Q Consensus 86 dP~Iv~~hdfLsd~E~e~Li~la~p---~L~rS~----V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIadl 158 (173)
=|=|.+.|||||.+|-+.|+++... .+..|. -+++++ +....+.||-.-+=++ ...+.+.+|+++.
T Consensus 71 ~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKv-NFkk~Klkt~~F~G~P------~~~~~v~rrm~~y 143 (306)
T KOG3959|consen 71 IPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKV-NFKKKKLKTDTFVGMP------EYADMVLRRMSEY 143 (306)
T ss_pred cCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCcc-chhhhhhccCcccCCc------hHHHHHHHHhhcc
Confidence 3789999999999999999998752 122221 112211 2233455554333332 4566778888887
Q ss_pred cCC
Q 030690 159 SQV 161 (173)
Q Consensus 159 TGL 161 (173)
.++
T Consensus 144 p~l 146 (306)
T KOG3959|consen 144 PVL 146 (306)
T ss_pred chh
Confidence 665
No 14
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=27.84 E-value=69 Score=24.14 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=17.2
Q ss_pred EEEcccCCHHHHHHHHHHhcC
Q 030690 90 LVLHNFLSMEECDYLRAIARP 110 (173)
Q Consensus 90 v~~hdfLsd~E~e~Li~la~p 110 (173)
+++.|+++++|++.|.+....
T Consensus 7 vvi~~~l~~~~~~~l~~~~~~ 27 (211)
T PF05721_consen 7 VVIRNVLSPEEVERLREELDR 27 (211)
T ss_dssp EEETTSS-HHHHHHHHHHHHH
T ss_pred EEECCcCCHHHHHHHHHHHHH
Confidence 679999999999999887654
No 15
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=26.38 E-value=72 Score=27.80 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=17.1
Q ss_pred EcccCCHHHHHHHHHHhcC
Q 030690 92 LHNFLSMEECDYLRAIARP 110 (173)
Q Consensus 92 ~hdfLsd~E~e~Li~la~p 110 (173)
..||||+.|+++|.+-++.
T Consensus 47 ~~~FLS~~Ei~~I~~~~~~ 65 (284)
T PF07894_consen 47 ERDFLSSEEIQYILENAED 65 (284)
T ss_pred CCCCCCHHHHHHHHHhccC
Confidence 4799999999999999874
No 16
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=26.19 E-value=89 Score=19.02 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 030690 7 MKIVFGLLTFVTFGMIIGALFQL 29 (173)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (173)
.-||+||+...-+|-...|..|.
T Consensus 7 ~GiVlGli~vtl~Glfv~Ay~QY 29 (37)
T PF02529_consen 7 SGIVLGLIPVTLAGLFVAAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHHHHHHHHH
Confidence 46899998888888888887774
No 17
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=25.73 E-value=1e+02 Score=25.11 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030690 7 MKIVFGLLTFVTFGMIIGALFQLAFIRKL 35 (173)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (173)
+.++.+++.++.+|++....||.-|.-=|
T Consensus 27 ~e~~~~~~~~~~~G~~~SviSQMGFFAYL 55 (180)
T PF14089_consen 27 GEILAGLFWLIGVGFTFSVISQMGFFAYL 55 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999886544
No 18
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=25.15 E-value=1e+02 Score=20.79 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=14.8
Q ss_pred CcchhHHHHHHHHHHHHHH
Q 030690 4 APSMKIVFGLLTFVTFGMI 22 (173)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (173)
.|..-+++||..||..|-.
T Consensus 35 ypvgPwLlglFvFVVcGSa 53 (65)
T KOG3491|consen 35 YPVGPWLLGLFVFVVCGSA 53 (65)
T ss_pred CCcchHHHHHHHHHhhcHH
Confidence 3566789999999988754
No 19
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.74 E-value=1.2e+02 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=22.7
Q ss_pred EeccCCcEEEEcccCCHHHHHHHHHHhc
Q 030690 82 VISWSPRILVLHNFLSMEECDYLRAIAR 109 (173)
Q Consensus 82 ~Ls~dP~Iv~~hdfLsd~E~e~Li~la~ 109 (173)
++-..|.++.+.|||++||-..++....
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe 34 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIE 34 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHh
Confidence 4566889999999999999887766543
No 20
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=21.39 E-value=76 Score=29.21 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhccCcCC-CCccc
Q 030690 25 ALFQLAFIRKLEDSYGT-DFPSF 46 (173)
Q Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~ 46 (173)
+.+||+|+++..|++|+ |||++
T Consensus 20 ~~LrLlFvekFayspg~~~fPeI 42 (426)
T smart00806 20 NALRLLFIEKFAYSPGGDDFPDI 42 (426)
T ss_pred HHHHHHHHHHhccCCCCCCCcce
Confidence 45899999999999765 56643
No 21
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.15 E-value=1.4e+02 Score=19.28 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=18.9
Q ss_pred CcEEEEcccCCHHHHHHHHHHhcC
Q 030690 87 PRILVLHNFLSMEECDYLRAIARP 110 (173)
Q Consensus 87 P~Iv~~hdfLsd~E~e~Li~la~p 110 (173)
|.+++++|| +++|++.++...+.
T Consensus 1 e~~ll~~g~-~~~el~~~l~~~r~ 23 (58)
T PF12646_consen 1 EEFLLFSGF-SGEELDKFLDALRK 23 (58)
T ss_pred CCEEEECCC-CHHHHHHHHHHHHH
Confidence 467889998 88999999887764
Done!