Query 030690
Match_columns 173
No_of_seqs 175 out of 777
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jig_A Prolyl-4 hydroxylase; h 99.9 2.8E-22 9.5E-27 163.2 9.2 99 73-173 6-104 (224)
2 3itq_A Prolyl 4-hydroxylase, a 99.8 7E-21 2.4E-25 155.9 4.8 88 78-173 30-117 (216)
3 3dkq_A PKHD-type hydroxylase S 98.3 4E-07 1.4E-11 75.5 4.2 84 81-173 13-105 (243)
4 2hbt_A EGL nine homolog 1; pro 97.1 0.0013 4.5E-08 54.0 7.8 54 87-142 26-84 (247)
5 2iuw_A Alkylated repair protei 76.8 12 0.00041 29.9 8.3 73 87-164 40-126 (238)
6 1x5v_A PCFK1; inhibitory cysti 58.7 3.4 0.00012 23.4 0.9 11 56-66 17-27 (34)
7 3s57_A Alpha-ketoglutarate-dep 56.4 58 0.002 25.2 8.3 76 84-164 7-100 (204)
8 1q90_G Cytochrome B6F complex 37.7 34 0.0012 20.0 3.0 24 6-29 6-29 (37)
9 2lx0_A Membrane fusion protein 36.8 30 0.001 19.1 2.5 19 9-27 11-29 (32)
10 1vf5_G Protein PET G; photosyn 28.7 44 0.0015 19.5 2.4 24 6-29 6-29 (37)
11 3dgp_A RNA polymerase II trans 25.9 52 0.0018 22.3 2.8 22 89-110 23-44 (80)
12 1cix_A Protein (tachystatin A) 21.4 51 0.0017 19.6 1.8 18 55-72 21-38 (44)
No 1
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=99.87 E-value=2.8e-22 Score=163.16 Aligned_cols=99 Identities=42% Similarity=0.671 Sum_probs=92.2
Q ss_pred eeecccceEEeccCCcEEEEcccCCHHHHHHHHHHhcCCCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHH
Q 030690 73 LRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIE 152 (173)
Q Consensus 73 L~LaPlK~E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~ 152 (173)
..++|.|+|+||++|+|++||||||++||++|++++++++++|++.+..+|....+.+|+|+++||...+ ++++++|.
T Consensus 6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~--~~~~~~i~ 83 (224)
T 2jig_A 6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE--DSVISKIE 83 (224)
T ss_dssp -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTC--SHHHHHHH
T ss_pred ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCC--CHHHHHHH
Confidence 3578999999999999999999999999999999999999999999887787778899999999999864 79999999
Q ss_pred HHHHHhcCCCCCCCccccccC
Q 030690 153 KRISVFSQVPVENGELIQVLR 173 (173)
Q Consensus 153 ~RIadlTGL~~~~aE~LQVlr 173 (173)
+||++++|+|....|.+||+|
T Consensus 84 ~ri~~~~gl~~~~~e~~qv~r 104 (224)
T 2jig_A 84 KRVAQVTMIPLENHEGLQVLH 104 (224)
T ss_dssp HHHHHHHTCCGGGBCCCEEEE
T ss_pred HHHHHHhCCCcccccceEEEe
Confidence 999999999999999999975
No 2
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=99.81 E-value=7e-21 Score=155.92 Aligned_cols=88 Identities=38% Similarity=0.486 Sum_probs=75.6
Q ss_pred cceEEeccCCcEEEEcccCCHHHHHHHHHHhcCCCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHH
Q 030690 78 VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISV 157 (173)
Q Consensus 78 lK~E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIad 157 (173)
++++++|++|+|++||||||++||++|+++|++++++|+|... ...+++|+|+++||.+ ++++++|.+||++
T Consensus 30 v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~----~~~~~~RtS~~~wl~~----~~~v~~i~~Ri~~ 101 (216)
T 3itq_A 30 IQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS----RDVNDIRTSSGAFLDD----NELTAKIEKRISS 101 (216)
T ss_dssp EEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC------------CCCCGGGTTCEECCC----CHHHHHHHHHHHH
T ss_pred EEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC----CccCCcEeeeeEEeCC----cHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999998321 3457899999999986 4999999999999
Q ss_pred hcCCCCCCCccccccC
Q 030690 158 FSQVPVENGELIQVLR 173 (173)
Q Consensus 158 lTGL~~~~aE~LQVlr 173 (173)
++|++.+++|.+||+|
T Consensus 102 ~~gl~~~~~E~lqv~~ 117 (216)
T 3itq_A 102 IMNVPASHGEGLHILN 117 (216)
T ss_dssp HHTSCGGGBCCCEEEE
T ss_pred hcCceeccccceeEEE
Confidence 9999999999999985
No 3
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=98.30 E-value=4e-07 Score=75.45 Aligned_cols=84 Identities=13% Similarity=0.028 Sum_probs=60.7
Q ss_pred EEeccCCcEEEEcccCCHHHHHHHHHHhcC-CCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHHhc
Q 030690 81 EVISWSPRILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS 159 (173)
Q Consensus 81 E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p-~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIadlT 159 (173)
|-+-.++.++++|||||++||++|+++++. .+.++.+. +.. ...++.++.||..+ +|++++|.+||.+++
T Consensus 13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~t----~g~--~~~~vr~n~~l~~d---~~~~~~l~~~i~~~l 83 (243)
T 3dkq_A 13 ENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQT----SGA--MATTRKRNQQLDKD---DPVAVALGQQIMDRL 83 (243)
T ss_dssp -CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECCC----SSB--SSCCCEEEEECCTT---CHHHHHHHHHHHHHH
T ss_pred cccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCccc----CCC--ccccceeeeEECCC---CHHHHHHHHHHHHHH
Confidence 344568999999999999999999999963 33333222 111 12345566888855 699999999999999
Q ss_pred CCC--------CCCCccccccC
Q 030690 160 QVP--------VENGELIQVLR 173 (173)
Q Consensus 160 GL~--------~~~aE~LQVlr 173 (173)
|.. ....|++|++|
T Consensus 84 ~~~~~f~~~~L~~~~e~~~~~r 105 (243)
T 3dkq_A 84 LAHPQFVSAALPLQFYPPLFNR 105 (243)
T ss_dssp HTCHHHHHHHCEEEEEEEEEEE
T ss_pred ccCcchhhcccccccccceEEE
Confidence 887 24577888764
No 4
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=97.14 E-value=0.0013 Score=54.01 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=41.6
Q ss_pred CcEEEEcccCCHHHHHHHHHHhcC-----CCcccEeeeCCCCCeeecceeeeeeeecCCCC
Q 030690 87 PRILVLHNFLSMEECDYLRAIARP-----HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142 (173)
Q Consensus 87 P~Iv~~hdfLsd~E~e~Li~la~p-----~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~ 142 (173)
+-+++++|||+++||+.|++.+.. .++++.+.+. +......+|+++.+|+...+
T Consensus 26 ~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~ 84 (247)
T 2hbt_A 26 HGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKE 84 (247)
T ss_dssp TSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCS
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccc
Confidence 346779999999999999998874 4677776552 12345689999999999764
No 5
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=76.84 E-value=12 Score=29.94 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=42.6
Q ss_pred CcEEEEcccCCHHHHHHHHHHhc--CCCcccEeeeCCCCCeeecceeeeeeeecCCC----------C--ccchHHHHHH
Q 030690 87 PRILVLHNFLSMEECDYLRAIAR--PHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPE----------E--KKYPMIQAIE 152 (173)
Q Consensus 87 P~Iv~~hdfLsd~E~e~Li~la~--p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~----------~--~~~pvv~rI~ 152 (173)
|-+.+++|||+++|.+.|.+... -.++...... -|+......+ .+|..+. . .=.+.+..|.
T Consensus 40 ~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~--~g~~~~~~R~---~~~~g~~~Y~Ys~~~~~~~p~wp~~l~~l~ 114 (238)
T 2iuw_A 40 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIR--EDITYQQPRL---TAWYGELPYTYSRITMEPNPHWHPVLRTLK 114 (238)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEES--SSCEEECSSE---EEEEECCCTTSCHHHHCCBSSCCHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHhCCCccCceec--CCcccccCCe---eEEcCCCccccCCcccCCCCCCCHHHHHHH
Confidence 45999999999999998887642 2333333211 1232222222 2344310 0 0036788899
Q ss_pred HHHHHhcCCCCC
Q 030690 153 KRISVFSQVPVE 164 (173)
Q Consensus 153 ~RIadlTGL~~~ 164 (173)
+++++.+|.+.+
T Consensus 115 ~~~~~~~g~~~n 126 (238)
T 2iuw_A 115 NRIEENTGHTFN 126 (238)
T ss_dssp HHHHHHHSCCCC
T ss_pred HHHHHHhCCCCC
Confidence 999988886554
No 6
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=58.71 E-value=3.4 Score=23.42 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=9.3
Q ss_pred cCCCccEEEeC
Q 030690 56 QLPRGVTFWDN 66 (173)
Q Consensus 56 ~lcrgl~C~y~ 66 (173)
.-|+||.|||-
T Consensus 17 ~cc~glqcryg 27 (34)
T 1x5v_A 17 PCCRGLQCRYG 27 (34)
T ss_dssp CBCTTEEEETE
T ss_pred ccceeeeeccC
Confidence 36899999995
No 7
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=56.43 E-value=58 Score=25.18 Aligned_cols=76 Identities=12% Similarity=0.019 Sum_probs=44.9
Q ss_pred ccCCcEEEEcccCCHHHHHHHHHHh--cCCC---cccEeeeCCCCCeeecceeeeeeeecCCCC-------------ccc
Q 030690 84 SWSPRILVLHNFLSMEECDYLRAIA--RPHL---QVSTVVDTKTGKGIKSNVRTSSGMFLSPEE-------------KKY 145 (173)
Q Consensus 84 s~dP~Iv~~hdfLsd~E~e~Li~la--~p~L---~rS~V~~~~tG~~~~s~~RtS~~awL~~~~-------------~~~ 145 (173)
--+=..+.|.+||+++|.+.|.+.- +..+ +...+.- -|+..... |. .+|..+.. .=.
T Consensus 7 ~~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~--~gk~~~~p-R~--~~wyg~~~~~Y~Ysg~~~~~~pwp 81 (204)
T 3s57_A 7 RAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQV--FGKWHSVP-RK--QATYGDAGLTYTFSGLTLSPKPWI 81 (204)
T ss_dssp EETTEEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEE--TTEEEECS-SE--EEEEECTTCCEEETTEEECCEECC
T ss_pred eeCCceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEE--CCeEeccC-cE--EEEECCCCCCcccCCCcccCCCCC
Confidence 3344567899999999999887643 3344 3222221 22322222 21 24544321 004
Q ss_pred hHHHHHHHHHHHhcCCCCC
Q 030690 146 PMIQAIEKRISVFSQVPVE 164 (173)
Q Consensus 146 pvv~rI~~RIadlTGL~~~ 164 (173)
|.+..|.+++++.+|.+.+
T Consensus 82 ~~L~~l~~~~~~~~g~~~n 100 (204)
T 3s57_A 82 PVLERIRDHVSGVTGQTFN 100 (204)
T ss_dssp HHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 8999999999999887654
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=37.67 E-value=34 Score=19.96 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 030690 6 SMKIVFGLLTFVTFGMIIGALFQL 29 (173)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (173)
-.-||+||+....+|-...|.+|.
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 346899999888888888888885
No 9
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=36.81 E-value=30 Score=19.11 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030690 9 IVFGLLTFVTFGMIIGALF 27 (173)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (173)
.+..||||..+|.-.--.+
T Consensus 11 glvalltflafgfwlfkyl 29 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567889988887654433
No 10
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=28.67 E-value=44 Score=19.49 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 030690 6 SMKIVFGLLTFVTFGMIIGALFQL 29 (173)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (173)
-.-||+||+...-+|-...|.+|.
T Consensus 6 L~GIVlGlipvtl~GLfv~Ay~Qy 29 (37)
T 1vf5_G 6 LDGLVLGLVFATLGGLFYAAYQQY 29 (37)
T ss_dssp ---CHHHHHHHHHHHHTHHHHHHT
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 346899999888888888887774
No 11
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=25.87 E-value=52 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.0
Q ss_pred EEEEcccCCHHHHHHHHHHhcC
Q 030690 89 ILVLHNFLSMEECDYLRAIARP 110 (173)
Q Consensus 89 Iv~~hdfLsd~E~e~Li~la~p 110 (173)
-++|.||.|.+|-+.+.+.|+.
T Consensus 23 g~Ly~~F~s~~efe~~~~yA~e 44 (80)
T 3dgp_A 23 GSLYSDFETSQEYNLLSKYAQD 44 (80)
T ss_dssp EEEEECCSCHHHHHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHH
Confidence 4789999999999999999984
No 12
>1cix_A Protein (tachystatin A); antimicrobial peptide, chitin-binding peptide; NMR {Tachypleus tridentatus} SCOP: g.3.6.2
Probab=21.36 E-value=51 Score=19.61 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=13.9
Q ss_pred ccCCCccEEEeCCCCCce
Q 030690 55 LQLPRGVTFWDNDKEAEL 72 (173)
Q Consensus 55 ~~lcrgl~C~y~~~~~pf 72 (173)
..-|+|+.||-+..++-|
T Consensus 21 ~~cc~g~~cr~~fpgs~~ 38 (44)
T 1cix_A 21 IPCCRGLTCRSYFPGSTY 38 (44)
T ss_dssp CCCCTTCEEEESSTTCSC
T ss_pred cceecceEEcccCCCccc
Confidence 557999999987666655
Done!