BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030692
MDPFSGSGSWNMMPSIPSHNSSPAASNQDNLFLSPQHQQQFYQQPTQFPQQQFQQQGRTP
QQQQQPQQQQQQNQHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQ
QLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEYEP

High Scoring Gene Products

Symbol, full name Information P value
MED9
AT1G55080 		protein from Arabidopsis thaliana 3.1e-35
AT1G29580 protein from Arabidopsis thaliana 2.6e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030692
        (173 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2205662 - symbol:MED9 "AT1G55080" species:3702...   330  3.1e-35   2
TAIR|locus:2013768 - symbol:AT1G29580 "AT1G29580" species...   127  2.6e-08   1


>TAIR|locus:2205662 [details] [associations]
            symbol:MED9 "AT1G55080" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016592 "mediator complex" evidence=IDA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006355 GO:GO:0006351
            GO:GO:0016592 EMBL:AC073944 EMBL:AY093241 EMBL:BT006281
            EMBL:AK227122 IPI:IPI00547680 PIR:D96592 RefSeq:NP_175905.2
            UniGene:At.37115 IntAct:Q8RWA2 PRIDE:Q8RWA2
            EnsemblPlants:AT1G55080.1 GeneID:841951 KEGG:ath:AT1G55080
            TAIR:At1g55080 eggNOG:NOG319262 InParanoid:Q8RWA2 OMA:IENGTRD
            ProtClustDB:CLSN2691454 Genevestigator:Q8RWA2 Uniprot:Q8RWA2
        Length = 244

 Score = 330 (121.2 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 64/95 (67%), Positives = 80/95 (84%)

Query:    78 SLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTV 137
             SLAS+FHL  ++E LAD IENGTRDQ SDALVNELN+HF+KCQQLL+SIS SL +K MTV
Sbjct:   149 SLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTV 208

Query:   138 EGQRRKLEESEQLLNQRKELIDKYMNSVEELIEYE 172
             +GQ+R +EESEQLL QR++LI +Y  S+EE++  E
Sbjct:   209 DGQKRNVEESEQLLQQRRDLIVEYRKSIEEIVTME 243

 Score = 67 (28.6 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query:     1 MDPFSGSG-SWNMMPSIPSHNSSPAASNQDN-LFL 33
             MD FSG G +W+M+P++ +  +    +N D  LFL
Sbjct:     1 MDQFSGGGGNWSMIPNVQAQGNFGTPTNHDQQLFL 35


>TAIR|locus:2013768 [details] [associations]
            symbol:AT1G29580 "AT1G29580" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC068667 IPI:IPI00527806 PIR:H86418
            RefSeq:NP_174251.1 UniGene:At.51823 EnsemblPlants:AT1G29580.1
            GeneID:839835 KEGG:ath:AT1G29580 TAIR:At1g29580 PhylomeDB:Q9C7P3
            Genevestigator:Q9C7P3 Uniprot:Q9C7P3
        Length = 89

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 28/70 (40%), Positives = 43/70 (61%)

Query:   104 QSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMN 163
             Q   L + L    E  + +  S +   ++ A+ V+ Q++ LEESEQLL QR ELI++Y  
Sbjct:    20 QHQTLASHLYPLVENLKDVTESRARDQNSDALYVDVQKQNLEESEQLLQQRMELIEEYKK 79

Query:   164 SVEELIEYEP 173
             SVEE+++ EP
Sbjct:    80 SVEEIVKKEP 89

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query:    78 SLASNFHLLHLMENLADAIENGTRDQQSDAL-VNELNNHFEKCQQLLSSISESLDTKAMT 136
             +LAS  HL  L+ENL D  E+  RDQ SDAL V+    + E+ +QLL    E ++    +
Sbjct:    23 TLAS--HLYPLVENLKDVTESRARDQNSDALYVDVQKQNLEESEQLLQQRMELIEEYKKS 80

Query:   137 VE 138
             VE
Sbjct:    81 VE 82


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.124   0.339    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      173       130   0.00091  102 3  11 23  0.48    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  128 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.60u 0.11s 19.71t   Elapsed:  00:00:01
  Total cpu time:  19.60u 0.11s 19.71t   Elapsed:  00:00:01
  Start:  Thu May  9 16:25:24 2013   End:  Thu May  9 16:25:25 2013

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