BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030692
         (173 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8RWA2|MED9_ARATH Mediator of RNA polymerase II transcription subunit 9
           OS=Arabidopsis thaliana GN=MED9 PE=1 SV=1
          Length = 244

 Score =  140 bits (353), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 83/99 (83%)

Query: 74  QHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTK 133
           Q HQSLAS+FHL  ++E LAD IENGTRDQ SDALVNELN+HF+KCQQLL+SIS SL +K
Sbjct: 145 QQHQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSK 204

Query: 134 AMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEYE 172
            MTV+GQ+R +EESEQLL QR++LI +Y  S+EE++  E
Sbjct: 205 TMTVDGQKRNVEESEQLLQQRRDLIVEYRKSIEEIVTME 243


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.123    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,247,030
Number of Sequences: 539616
Number of extensions: 2461926
Number of successful extensions: 80329
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 641
Number of HSP's that attempted gapping in prelim test: 19814
Number of HSP's gapped (non-prelim): 19340
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)