Query 030692
Match_columns 173
No_of_seqs 22 out of 24
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 04:25:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b8c_D Glucose-repressible alc 95.5 0.0034 1.2E-07 56.1 1.1 12 8-19 9-20 (727)
2 3uun_A Dystrophin; triple heli 88.1 2.5 8.5E-05 28.0 7.1 64 107-171 9-72 (119)
3 4abx_A DNA repair protein RECN 85.5 0.69 2.4E-05 35.1 3.5 60 109-170 89-150 (175)
4 3uul_A Utrophin; spectrin repe 84.8 4.4 0.00015 26.9 6.9 63 108-171 10-72 (118)
5 3agt_A Hemerythrin-like domain 72.7 16 0.00056 26.0 7.2 71 82-162 23-97 (136)
6 1ez3_A Syntaxin-1A; three heli 69.8 9.4 0.00032 26.6 5.2 27 104-130 51-77 (127)
7 3pwx_A Putative flagellar HOOK 68.6 16 0.00054 29.1 6.9 77 83-168 152-228 (239)
8 3ghg_B Fibrinogen beta chain; 63.9 4.3 0.00015 37.0 3.1 27 145-171 126-152 (461)
9 1qb3_A Cyclin-dependent kinase 60.9 1.8 6.1E-05 34.7 0.1 6 73-78 131-136 (150)
10 3gwk_C SAG1039, putative uncha 59.2 9.5 0.00033 25.2 3.4 50 84-134 33-82 (98)
11 3mov_A Lamin-B1; LMNB1, B-type 58.6 22 0.00076 25.5 5.5 48 116-166 39-89 (95)
12 4dnd_A Syntaxin-10, SYN10; str 58.2 14 0.00049 27.7 4.7 59 105-169 65-125 (130)
13 2k0n_A Mediator of RNA polymer 57.5 51 0.0018 24.2 7.3 63 87-158 18-83 (85)
14 3kbt_A Beta-I spectrin, spectr 56.0 42 0.0014 25.8 7.1 42 130-171 244-285 (326)
15 2xv5_A Lamin-A/C; structural p 55.8 17 0.00058 25.3 4.3 48 116-166 7-57 (74)
16 2hmq_A Hemerythrin; oxygen tra 54.8 12 0.0004 26.4 3.5 44 82-129 25-68 (113)
17 3edu_A Beta-I spectrin, spectr 54.5 48 0.0016 24.5 7.0 58 116-173 114-178 (218)
18 1tqg_A Chemotaxis protein CHEA 51.5 44 0.0015 22.4 5.8 41 85-126 63-103 (105)
19 1dn1_B Syntaxin 1A, syntaxin b 49.0 1E+02 0.0035 24.7 9.0 27 104-130 74-100 (267)
20 1x8y_A Lamin A/C; structural p 47.7 64 0.0022 22.3 6.3 46 119-167 33-81 (86)
21 2ve7_A Kinetochore protein HEC 46.9 29 0.001 28.9 5.2 16 81-96 99-114 (315)
22 1s35_A Beta-I spectrin, spectr 45.5 83 0.0028 22.7 7.0 34 136-169 34-67 (214)
23 4hpq_C ATG17, KLTH0D15642P; au 45.3 40 0.0014 29.9 6.0 18 107-124 208-225 (413)
24 3htk_A Structural maintenance 44.9 39 0.0013 21.3 4.5 50 112-168 3-52 (60)
25 1u4q_A Spectrin alpha chain, b 43.0 1.1E+02 0.0037 23.3 7.7 36 136-171 249-284 (322)
26 3edv_A Spectrin beta chain, br 42.6 74 0.0025 24.5 6.5 57 116-172 119-182 (323)
27 3cqx_C BAG family molecular ch 42.6 50 0.0017 24.3 5.3 42 112-153 27-79 (88)
28 1fio_A SSO1 protein; four heli 42.0 1E+02 0.0035 22.7 7.6 26 105-130 51-76 (196)
29 1gk4_A Vimentin; intermediate 41.1 71 0.0024 21.9 5.6 23 144-166 53-78 (84)
30 1s35_A Beta-I spectrin, spectr 39.9 1E+02 0.0035 22.2 7.1 37 135-171 140-176 (214)
31 4fla_A Regulation of nuclear P 39.8 70 0.0024 24.6 6.0 23 109-131 70-92 (152)
32 2lch_A Protein OR38; structura 39.1 85 0.0029 21.5 5.9 43 85-128 64-106 (113)
33 3fb2_A Spectrin alpha chain, b 38.2 1.1E+02 0.0037 22.5 6.7 56 116-171 128-188 (218)
34 1gk6_A Vimentin; intermediate 38.0 51 0.0017 21.5 4.3 23 144-166 27-52 (59)
35 1m1j_B Fibrinogen beta chain; 37.8 59 0.002 29.3 6.0 34 108-141 122-155 (464)
36 2odv_A Plectin 1, HD1; plakin 37.8 96 0.0033 24.9 6.8 61 112-172 129-195 (235)
37 1u5p_A Spectrin alpha chain, b 37.3 1.2E+02 0.0039 22.0 6.6 33 136-168 37-69 (216)
38 2yru_A Steroid receptor RNA ac 35.2 22 0.00074 26.4 2.4 43 85-127 61-103 (118)
39 2qyw_A Vesicle transport throu 34.3 1.2E+02 0.0042 21.4 7.2 29 102-131 45-73 (102)
40 3ogi_B ESXO, putative ESAT-6-l 33.4 32 0.0011 25.7 3.0 55 85-139 34-88 (99)
41 2qqy_A Sigma B operon; dodecam 33.1 1.1E+02 0.0038 20.6 6.4 89 79-167 19-110 (149)
42 2yfa_A MCPS, methyl-accepting 33.0 1.5E+02 0.005 21.9 7.7 53 106-165 170-222 (258)
43 4fla_A Regulation of nuclear P 33.0 82 0.0028 24.2 5.4 47 107-153 86-132 (152)
44 3zbh_A ESXA; unknown function, 32.7 22 0.00074 23.0 1.8 46 85-131 35-80 (99)
45 3us6_A Histidine-containing ph 32.5 1.5E+02 0.0052 21.9 7.7 29 142-170 107-135 (153)
46 1nvp_D Transcription initiatio 32.3 61 0.0021 24.0 4.4 30 87-119 13-42 (108)
47 3edu_A Beta-I spectrin, spectr 32.3 1.5E+02 0.0051 21.8 7.5 35 136-170 35-70 (218)
48 1nh2_D Transcription initiatio 31.5 62 0.0021 24.6 4.4 30 87-119 17-46 (121)
49 3fav_B ESAT-6, 6 kDa early sec 31.3 48 0.0016 21.5 3.4 43 88-131 34-76 (94)
50 2mhr_A Myohemerythrin; oxygen 30.8 51 0.0017 23.1 3.6 44 82-129 25-68 (118)
51 4egx_A Kinesin-like protein KI 30.0 82 0.0028 24.3 5.0 45 108-162 6-50 (184)
52 2vs0_A Virulence factor ESXA; 29.7 55 0.0019 20.9 3.4 48 85-133 32-79 (97)
53 2zvf_A Alanyl-tRNA synthetase; 29.6 1.5E+02 0.0053 21.3 6.2 22 114-135 7-28 (171)
54 3kbt_A Beta-I spectrin, spectr 29.3 1.2E+02 0.0042 23.1 5.9 21 136-156 38-58 (326)
55 3edv_A Spectrin beta chain, br 28.6 2E+02 0.0068 22.0 8.5 35 136-170 253-287 (323)
56 3rkg_A Magnesium transporter M 27.9 1.5E+02 0.0053 24.4 6.6 55 108-171 139-196 (261)
57 3zcc_A HAMP, osmolarity sensor 27.0 1.1E+02 0.0039 18.7 4.5 18 152-169 94-111 (114)
58 2ld6_A Chemotaxis protein CHEA 26.9 1.2E+02 0.0041 21.8 5.2 44 85-129 62-105 (139)
59 1m1j_C Fibrinogen gamma chain; 26.9 55 0.0019 28.9 3.9 21 109-129 47-67 (409)
60 1wr6_A ADP-ribosylation factor 26.2 1.5E+02 0.0052 21.6 5.6 61 97-165 28-89 (111)
61 3qc1_A Immunoglobulin-binding 26.0 1.4E+02 0.0047 24.3 5.9 44 84-127 35-81 (243)
62 2c5k_T Syntaxin TLG1, T-snare 26.0 85 0.0029 22.3 4.1 53 106-168 35-87 (95)
63 1u5p_A Spectrin alpha chain, b 25.6 1.9E+02 0.0065 20.8 6.9 37 135-171 142-178 (216)
64 1yvi_A Histidine-containing ph 25.4 1.9E+02 0.0066 20.8 7.1 24 144-167 110-133 (149)
65 3a6m_A Protein GRPE, HSP-70 co 25.2 1.1E+02 0.0039 23.8 5.1 47 77-127 69-115 (177)
66 1hci_A Alpha-actinin 2; triple 24.9 2.3E+02 0.0078 23.0 7.0 63 109-171 133-201 (476)
67 3h6p_C ESAT-6-like protein ESX 24.6 1.1E+02 0.0037 20.1 4.2 45 88-133 35-79 (96)
68 4ani_A Protein GRPE; chaperone 24.6 1.2E+02 0.0042 24.6 5.3 44 84-127 114-157 (213)
69 2gpv_G Nuclear receptor corepr 24.3 24 0.00081 21.1 0.7 14 153-167 9-22 (26)
70 1gax_A Valrs, valyl-tRNA synth 23.8 1.4E+02 0.0049 28.1 6.3 56 104-159 797-859 (862)
71 1i5n_A Chemotaxis protein CHEA 23.5 2.1E+02 0.0073 20.7 6.7 44 85-129 65-108 (146)
72 3f31_A Spectrin alpha chain, b 23.0 2.1E+02 0.007 20.3 5.8 37 134-170 77-113 (149)
73 1r8i_A TRAC; VIRB5, helical bu 22.9 1.2E+02 0.0043 23.5 4.9 52 107-158 124-187 (213)
74 3hh0_A Transcriptional regulat 22.8 1.5E+02 0.0052 21.7 5.1 35 136-170 77-111 (146)
75 2v5d_A O-GLCNACASE NAGJ; famil 22.5 4.5E+02 0.016 24.1 9.7 62 85-158 471-532 (737)
76 1s94_A S-syntaxin; three helix 22.4 2.4E+02 0.0081 20.8 6.5 60 104-164 82-145 (180)
77 1hci_A Alpha-actinin 2; triple 22.3 3.1E+02 0.011 22.2 7.5 46 117-162 377-426 (476)
78 2yfa_A MCPS, methyl-accepting 22.2 2.4E+02 0.0082 20.8 7.2 25 106-130 47-72 (258)
79 3lbx_A Spectrin alpha chain, e 22.1 2.3E+02 0.0078 20.5 7.1 37 134-170 87-123 (161)
80 3szr_A Interferon-induced GTP- 21.8 1.5E+02 0.005 26.3 5.6 72 87-172 297-368 (608)
81 1d7m_A Cortexillin I; coiled-c 21.1 1.1E+02 0.0036 23.1 3.9 48 123-170 6-60 (101)
82 2zdi_C Prefoldin subunit alpha 21.0 2.5E+02 0.0084 20.5 6.6 29 141-169 93-121 (151)
83 3fwc_B Nuclear mRNA export pro 20.8 1.5E+02 0.005 21.0 4.5 12 149-160 32-43 (85)
84 1gl2_C VTI1B, vesicle transpor 20.7 1.7E+02 0.0057 19.2 4.5 54 113-166 8-61 (65)
85 1oxz_A ADP-ribosylation factor 20.4 3.2E+02 0.011 21.6 8.3 62 98-166 97-159 (186)
86 3lcn_C MRNA transport factor G 20.3 55 0.0019 20.0 1.8 17 139-155 10-26 (29)
87 4akv_A Sorting nexin-33; trans 20.2 2.6E+02 0.0089 23.6 6.6 57 112-169 258-315 (386)
No 1
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.50 E-value=0.0034 Score=56.10 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=0.0
Q ss_pred CcceeccCCCCC
Q 030692 8 GSWNMMPSIPSH 19 (173)
Q Consensus 8 GSwtMiPs~~~~ 19 (173)
.+..|+|..+.+
T Consensus 9 ~~~~~~~~~~~~ 20 (727)
T 4b8c_D 9 NSIGMVPTVGTP 20 (727)
T ss_dssp ------------
T ss_pred cccCCCcccCCc
Confidence 456677744433
No 2
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=88.11 E-value=2.5 Score=27.99 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030692 107 ALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEY 171 (173)
Q Consensus 107 aLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~ 171 (173)
.-+++|.+=+..+...|.+. ..++...-+|+.+.++.++.+.-+..++..|..-.+..++|+..
T Consensus 9 ~~l~el~~WL~~~e~~l~~~-~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~ 72 (119)
T 3uun_A 9 TALEEVLSWLLSAEDTLQAQ-GEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGT 72 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 34556666666666666553 23445556888899999999999999988888888888887753
No 3
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=85.48 E-value=0.69 Score=35.13 Aligned_cols=60 Identities=22% Similarity=0.350 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccc--ccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030692 109 VNELNNHFEKCQQLLSSISESLDTK--AMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIE 170 (173)
Q Consensus 109 v~ELts~F~kcQQlLnSiS~Si~sk--~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~ 170 (173)
+.++...++.|.-.|.-++..|+.- .+..+- ..|++.+..|+.=+.|-.||..+|++|+.
T Consensus 89 l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP--~rL~~ie~RL~~l~~L~RKyg~~~eell~ 150 (175)
T 4abx_A 89 VMQLQNELRAALESVQAIAGELRDVAEGSAADP--EALDRVEARLSALSKLKNKYGPTLEDVVE 150 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH--HHHHHHHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3444444455555555555444321 233343 45999999999999999999999999975
No 4
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=84.84 E-value=4.4 Score=26.94 Aligned_cols=63 Identities=10% Similarity=0.118 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030692 108 LVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEY 171 (173)
Q Consensus 108 Lv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~ 171 (173)
-+++|.+=+..+...|.+. ..++...-+|+.|.++.++.+.-+..++..|..-....+.|+..
T Consensus 10 ~l~el~~WL~e~e~~l~~~-~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~ 72 (118)
T 3uul_A 10 ALEEVLTWLLSAEDTFQEQ-DDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQ 72 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTS-CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566666555542 33455556888888888888888888888888888888887753
No 5
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=72.72 E-value=16 Score=25.98 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHhhhCCcccc----chHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHH
Q 030692 82 NFHLLHLMENLADAIENGTRDQQ----SDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKEL 157 (173)
Q Consensus 82 HfhL~~Lve~LaDaie~GtRDQ~----sDaLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdl 157 (173)
|=.|+.+|.+|.+++..|. +.. .+.|++-...||..=+.|+..+.-+ ..+.- ..+++..++.=+++
T Consensus 23 Hk~L~~lin~l~~a~~~~~-~~~i~~~l~~L~~y~~~HF~~EE~lM~~~~yp------~~~~H---~~~H~~f~~~v~~l 92 (136)
T 3agt_A 23 HKRLVDYINDLYRAARRRD-MDKAREVFDALKNYAVEHFGYEERLFADYAYP------EATRH---KEIHRRFVETVLKW 92 (136)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT------THHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------cHHHH---HHHHHHHHHHHHHH
Confidence 6679999999999999887 433 3556666778899999999988654 23333 34555555555555
Q ss_pred HHHHH
Q 030692 158 IDKYM 162 (173)
Q Consensus 158 i~kYr 162 (173)
..+|.
T Consensus 93 ~~~~~ 97 (136)
T 3agt_A 93 EKQLA 97 (136)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55553
No 6
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=69.82 E-value=9.4 Score=26.61 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=23.3
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcc
Q 030692 104 QSDALVNELNNHFEKCQQLLSSISESL 130 (173)
Q Consensus 104 ~sDaLv~ELts~F~kcQQlLnSiS~Si 130 (173)
..|+++.+++..+..|...|.+|..+.
T Consensus 51 ~l~~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 51 ELEELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999998664
No 7
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=68.60 E-value=16 Score=29.12 Aligned_cols=77 Identities=13% Similarity=0.293 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHHHHHH
Q 030692 83 FHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYM 162 (173)
Q Consensus 83 fhL~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr 162 (173)
..+|..++++.++++.++ +++...+..-.++...-++.|+.... .|.+.-..||-....|..+..-+.+-+
T Consensus 152 ~~vf~~l~~~~~~l~~~~-----~~~~~~~~~al~~ld~a~~~v~~~ra----~lGa~~nrle~~~~~l~~~~~~l~~~~ 222 (239)
T 3pwx_A 152 KNVLNQIDALIAEFEKPS-----PNFQAEVDASLNAIDDTMANVLGAMT----EIGGRHNNLDLMDGAHSENKLFVDKVS 222 (239)
T ss_dssp CCHHHHHHHHHHHHHSCC-----TTHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 368888888888888776 22333344444444455555553322 566666777777777888887777777
Q ss_pred HHHHHH
Q 030692 163 NSVEEL 168 (173)
Q Consensus 163 ~sVEel 168 (173)
+-+|++
T Consensus 223 S~i~D~ 228 (239)
T 3pwx_A 223 GDLSAL 228 (239)
T ss_dssp HCC---
T ss_pred HhhhcC
Confidence 777664
No 8
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=63.91 E-value=4.3 Score=37.01 Aligned_cols=27 Identities=11% Similarity=0.418 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030692 145 EESEQLLNQRKELIDKYMNSVEELIEY 171 (173)
Q Consensus 145 eEseqlL~qRrdli~kYr~sVEel~~~ 171 (173)
.+-+........++.||++|||++++.
T Consensus 126 ~~~q~~~~~n~~~~~~s~~mle~~~~~ 152 (461)
T 3ghg_B 126 QKRQKQVKDNENVVNEYSSELEKHQLY 152 (461)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTH
T ss_pred ccccCCCCcchhHHHHHHHHHHHHHHH
Confidence 333344444466777888888887653
No 9
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=60.94 E-value=1.8 Score=34.67 Aligned_cols=6 Identities=50% Similarity=0.822 Sum_probs=0.0
Q ss_pred HHHHHh
Q 030692 73 NQHHQS 78 (173)
Q Consensus 73 qq~hqs 78 (173)
+++|++
T Consensus 131 q~~~~~ 136 (150)
T 1qb3_A 131 QQQHQT 136 (150)
T ss_dssp ------
T ss_pred hccccC
Confidence 333443
No 10
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=59.20 E-value=9.5 Score=25.16 Aligned_cols=50 Identities=24% Similarity=0.241 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 030692 84 HLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKA 134 (173)
Q Consensus 84 hL~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~Si~sk~ 134 (173)
.|...|+.|.+.-++.+. ..++...+++...|++...+|++|+..|...+
T Consensus 33 ~L~~~~~~l~~~W~G~a~-~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a 82 (98)
T 3gwk_C 33 LLTQEQAVIDENWDGSTF-DSFEAQFNELSPKITEFAQLLEDINQQLLKVA 82 (98)
T ss_dssp HHHHHHHHHHHHBCSSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777776665555 45688888999999999999999998776433
No 11
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=58.64 E-value=22 Score=25.51 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHH---HHHHHHHHH
Q 030692 116 FEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKEL---IDKYMNSVE 166 (173)
Q Consensus 116 F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdl---i~kYr~sVE 166 (173)
.+..+..|..+...|.. +..++.++ +.||+.|||-+..| |+.||+.+|
T Consensus 39 ~~~~q~~i~~lE~eL~~--~r~e~~~q-l~EYq~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 39 KDNSRRMLTDKEREMAE--IRDQMQQQ-LNDYEQLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555555432 23333333 78899999988776 789999875
No 12
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=58.23 E-value=14 Score=27.68 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccccccchhh--hhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030692 105 SDALVNELNNHFEKCQQLLSSISESLDTKAMTVEG--QRRKLEESEQLLNQRKELIDKYMNSVEELI 169 (173)
Q Consensus 105 sDaLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~g--Qk~~LeEseqlL~qRrdli~kYr~sVEel~ 169 (173)
.+.+-+||.+-+..+.-=|.-+..||. .|+. -|=+|++.| |..||..|+..|+-|.++-
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~----ivE~np~kF~l~~~E--i~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIG----IVEANPGKFKLPAGD--LQERKVFVERMREAVQEMK 125 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCHHHHCCCHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCHHhcCCCHHH--HHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888877766 3442 233455554 8999999999999998763
No 13
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=57.47 E-value=51 Score=24.22 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=45.3
Q ss_pred HHHHHHHHH--hhhCCccccchHHHHHHHHH-HHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHH
Q 030692 87 HLMENLADA--IENGTRDQQSDALVNELNNH-FEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELI 158 (173)
Q Consensus 87 ~Lve~LaDa--ie~GtRDQ~sDaLv~ELts~-F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli 158 (173)
.|+.-|+|. |.+|.+| ++=.=.++++ ||. ++=.+-+||..+.+.=+.+++-.++-++.|+...
T Consensus 18 eL~qiLmDIn~iNGG~~~---~~EKlk~~A~~FEa------aLyaksSSK~eYmdsMr~ki~aMr~t~~~~kk~~ 83 (85)
T 2k0n_A 18 GLLQVLMDINTLNGGSSD---TADKIRIHAKNFEA------ALFAKSSSKKEYMDSMNEKVAVMRNTYNTRKNAV 83 (85)
T ss_dssp HHHHHHHHHHHHHSCSTT---HHHHHHHHHHHHHH------HHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCchh---HHHHHHHHHHHHHH------HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445553 7788888 3333334444 664 4556667999999999999999999999998764
No 14
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=55.96 E-value=42 Score=25.77 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=18.6
Q ss_pred ccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030692 130 LDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEY 171 (173)
Q Consensus 130 i~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~ 171 (173)
++...-+|+.+.++++..+.-|...++-|..-....++|++.
T Consensus 244 ~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~~L~~~ 285 (326)
T 3kbt_A 244 VGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTA 285 (326)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444788888888888888888877777777777776654
No 15
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=55.81 E-value=17 Score=25.28 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHH---HHHHHHHHH
Q 030692 116 FEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKEL---IDKYMNSVE 166 (173)
Q Consensus 116 F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdl---i~kYr~sVE 166 (173)
-+..+..+..+...|..-.-..+.| +.|++.|||-.-.| |+-||+.+|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~q---l~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQ---LDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555444222233333 77999999987655 788998775
No 16
>2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} SCOP: a.24.4.1 PDB: 2hmz_A 1hmd_A 1hmo_A 1i4y_A 1i4z_A 1hrb_A
Probab=54.76 E-value=12 Score=26.43 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhc
Q 030692 82 NFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISES 129 (173)
Q Consensus 82 HfhL~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~S 129 (173)
|=.|+.+|.+|.++ ..| |. .+.|++-...||..=+.|+..+.-+
T Consensus 25 Hk~L~~~in~l~~a-~~~--~~-l~~L~~y~~~HF~~EE~lM~~~~yp 68 (113)
T 2hmq_A 25 HKTLFNGILLLSQA-DNA--DH-LNELRRCTGKHFLNEQQLMQASQYA 68 (113)
T ss_dssp HHHHHHHHHHHHHC-CSH--HH-HHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhh-cch--HH-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66789999999999 777 44 8899999999999999999988644
No 17
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=54.47 E-value=48 Score=24.49 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhh-------hcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030692 116 FEKCQQLLSSIS-------ESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEYEP 173 (173)
Q Consensus 116 F~kcQQlLnSiS-------~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~~p 173 (173)
|..|..+++-|. ..++...-+|....++++..|..|..+.+-+..-....++|+...|
T Consensus 114 ~~~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~~~~~ 178 (218)
T 3edu_A 114 FYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYA 178 (218)
T ss_dssp HHHHHHHHHHHHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 355555555443 2334444578999999999999999999988888888888877543
No 18
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=51.51 E-value=44 Score=22.44 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhh
Q 030692 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSI 126 (173)
Q Consensus 85 L~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSi 126 (173)
+.|-+|++.+.+..|... .++++++.|..-++....++..+
T Consensus 63 la~~lE~~l~~~r~~~~~-~~~~~~~~l~~~~d~l~~~l~~~ 103 (105)
T 1tqg_A 63 LCHTLENILDKARNSEIK-ITSDLLDKIFAGVDMITRMVDKI 103 (105)
T ss_dssp HHHHHHHHHHHHHTTSSC-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777654 45889999999999999888765
No 19
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=48.96 E-value=1e+02 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=23.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcc
Q 030692 104 QSDALVNELNNHFEKCQQLLSSISESL 130 (173)
Q Consensus 104 ~sDaLv~ELts~F~kcQQlLnSiS~Si 130 (173)
..++++++++..|.+|...|.+|...+
T Consensus 74 ~l~~l~~~i~~~~~~i~~~Lk~l~~~~ 100 (267)
T 1dn1_B 74 ELEELMSDIKKTANKVRSKLKSIEQSI 100 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998664
No 20
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.74 E-value=64 Score=22.32 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=28.2
Q ss_pred HHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHH---HHHHHHHHHH
Q 030692 119 CQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKEL---IDKYMNSVEE 167 (173)
Q Consensus 119 cQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdl---i~kYr~sVEe 167 (173)
.+..+..+..-|.. +.-+..++ +.||+.|||-.-.| |+-||+..|.
T Consensus 33 ~q~~i~~lE~el~~--~r~e~~~q-l~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 33 SRRLLAEKEREMAE--MRARMQQQ-LDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 44444444444332 12233333 77999999987665 8899998874
No 21
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=46.89 E-value=29 Score=28.92 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHh
Q 030692 81 SNFHLLHLMENLADAI 96 (173)
Q Consensus 81 SHfhL~~Lve~LaDai 96 (173)
+|+|++.++.=|.|++
T Consensus 99 sWp~~Lg~L~WLvel~ 114 (315)
T 2ve7_A 99 TWPHIVAALVWLIDCI 114 (315)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4677777666665554
No 22
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=45.52 E-value=83 Score=22.70 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=15.6
Q ss_pred chhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030692 136 TVEGQRRKLEESEQLLNQRKELIDKYMNSVEELI 169 (173)
Q Consensus 136 tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~ 169 (173)
+|+...++..+.+..++.|.+-|..-...-++|+
T Consensus 34 ~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~ 67 (214)
T 1s35_A 34 EAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVI 67 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 23
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=45.32 E-value=40 Score=29.87 Aligned_cols=18 Identities=33% Similarity=0.809 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030692 107 ALVNELNNHFEKCQQLLS 124 (173)
Q Consensus 107 aLv~ELts~F~kcQQlLn 124 (173)
++.+-||+||++|..+.+
T Consensus 208 ~~L~SLT~HyDqC~~l~~ 225 (413)
T 4hpq_C 208 DFLKSFTDHFDKCSALSS 225 (413)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456778999999995553
No 24
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.88 E-value=39 Score=21.26 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030692 112 LNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEEL 168 (173)
Q Consensus 112 Lts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel 168 (173)
+...+.+++..++++.+-+. -=+..++++...|++..+=+.+++..|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 3 FANTKKTLENQVEELTEKCS-------LKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544322 223344555555555555555555555443
No 25
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=42.99 E-value=1.1e+02 Score=23.32 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=23.6
Q ss_pred chhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030692 136 TVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEY 171 (173)
Q Consensus 136 tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~ 171 (173)
.|+...++++..+.-+..+++.|.+-....++|+..
T Consensus 249 ~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~ 284 (322)
T 1u4q_A 249 AIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 284 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666777777777776666666666666666653
No 26
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=42.62 E-value=74 Score=24.46 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhh-------hcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030692 116 FEKCQQLLSSIS-------ESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEYE 172 (173)
Q Consensus 116 F~kcQQlLnSiS-------~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~~ 172 (173)
+..|..+++-|. ..++...-+|..+.++.+..+.-|..+.+-|.......++|+...
T Consensus 119 ~~~~~e~~~Wl~~k~~~l~~~~~~d~~~v~~l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~~~~ 182 (323)
T 3edv_A 119 YHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAY 182 (323)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555544443 223444457888999999999999888888888888888877643
No 27
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=42.62 E-value=50 Score=24.29 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhhhccccccc-----------chhhhhcchHHHHHHHHH
Q 030692 112 LNNHFEKCQQLLSSISESLDTKAM-----------TVEGQRRKLEESEQLLNQ 153 (173)
Q Consensus 112 Lts~F~kcQQlLnSiS~Si~sk~~-----------tV~gQk~~LeEseqlL~q 153 (173)
+.+-=++|+.+||+-|..-..-++ |+|-||+--...|.||+.
T Consensus 27 ~~~ar~~c~~ylnACss~~~~gp~DqkFqs~vi~CtlDDQKkIkkRLe~Ll~~ 79 (88)
T 3cqx_C 27 LGNAKSHLMSLYSACSSEVPPGPVDQKFQSIVIGCALEDQKKIKRRLETLLRN 79 (88)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHhcccHhhHHHHHHHHHHHHHH
Confidence 344568999999998855333333 889999877777777654
No 28
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=41.97 E-value=1e+02 Score=22.68 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhcc
Q 030692 105 SDALVNELNNHFEKCQQLLSSISESL 130 (173)
Q Consensus 105 sDaLv~ELts~F~kcQQlLnSiS~Si 130 (173)
.+.++.+++..|.+|...|..|+...
T Consensus 51 i~~l~~~i~~~~~~~~~~lk~l~~~~ 76 (196)
T 1fio_A 51 LDNFVAQATDLQFKLKNEIKSAQRDG 76 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46688899999999999999998653
No 29
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=41.12 E-value=71 Score=21.90 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHH---HHHHHHHHH
Q 030692 144 LEESEQLLNQRKEL---IDKYMNSVE 166 (173)
Q Consensus 144 LeEseqlL~qRrdl---i~kYr~sVE 166 (173)
+.||+.|||-.-.| |+-||+..|
T Consensus 53 ~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 53 LREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 77899999987665 789999875
No 30
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=39.86 E-value=1e+02 Score=22.18 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.1
Q ss_pred cchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030692 135 MTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEY 171 (173)
Q Consensus 135 ~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~ 171 (173)
-+|+...++.+..+..|+..++-|..-....++|+..
T Consensus 140 ~~v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~ 176 (214)
T 1s35_A 140 EAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAE 176 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 3677888888888888877777777766666766654
No 31
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=39.80 E-value=70 Score=24.60 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc
Q 030692 109 VNELNNHFEKCQQLLSSISESLD 131 (173)
Q Consensus 109 v~ELts~F~kcQQlLnSiS~Si~ 131 (173)
.++|...|+.|..+|+..-+.|.
T Consensus 70 ~e~l~~~veeA~~~L~eYn~rL~ 92 (152)
T 4fla_A 70 AERLSKTVDEACLLLAEYNGRLA 92 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888877776665
No 32
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=39.11 E-value=85 Score=21.47 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhh
Q 030692 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISE 128 (173)
Q Consensus 85 L~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~ 128 (173)
+.|-+|++-+.+..|...- ++++++.|-.-++....++..+..
T Consensus 64 lah~~E~~l~~~r~~~~~~-~~~l~~~l~~~~d~l~~~l~~~~~ 106 (113)
T 2lch_A 64 VLHTIMNLVDKMLNSEIKI-TSDLIDKVKKKLDMVTRELDKKVS 106 (113)
T ss_dssp HHHHHHHHHHHHTSTTTCC-CHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5567788888887777654 478999999999999999987763
No 33
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=38.18 E-value=1.1e+02 Score=22.53 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhhccccc-----ccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030692 116 FEKCQQLLSSISESLDTK-----AMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEY 171 (173)
Q Consensus 116 F~kcQQlLnSiS~Si~sk-----~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~ 171 (173)
++++..||+.....|.+. .-.|+...++.++.+..|+.+.+-|..-....++|+..
T Consensus 128 ~~~~~~WL~~~e~~L~~~~~g~s~~~ve~ll~~h~~f~~~l~~~~~~v~~l~~~~~~L~~~ 188 (218)
T 3fb2_A 128 CEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAA 188 (218)
T ss_dssp HHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Confidence 345555666554444332 22677788888888888888888777777777777754
No 34
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=37.99 E-value=51 Score=21.52 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHH---HHHHHHHHH
Q 030692 144 LEESEQLLNQRKEL---IDKYMNSVE 166 (173)
Q Consensus 144 LeEseqlL~qRrdl---i~kYr~sVE 166 (173)
+.|++.|||-.-.| |+-||+..|
T Consensus 27 ~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 27 KKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 67889999887655 788999876
No 35
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.78 E-value=59 Score=29.33 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccchhhhh
Q 030692 108 LVNELNNHFEKCQQLLSSISESLDTKAMTVEGQR 141 (173)
Q Consensus 108 Lv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk 141 (173)
+|+.|...++.-|.-+..+...|......+|-+.
T Consensus 122 ~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 122 YVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 4455555554444433333333333333333333
No 36
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=37.76 E-value=96 Score=24.92 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=45.8
Q ss_pred HHHHHH----HHHHHHhhhhhccc--ccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030692 112 LNNHFE----KCQQLLSSISESLD--TKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEYE 172 (173)
Q Consensus 112 Lts~F~----kcQQlLnSiS~Si~--sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~~ 172 (173)
|.++|. .|..||+-+..-|. .+.+.|+-+.++.++.+.-|.-..+.|..--..|++|..+.
T Consensus 129 La~kf~rka~~~e~~L~~~~~~L~~d~~~l~~~~a~k~~e~ie~dL~~~e~~i~~l~~~a~~L~~~~ 195 (235)
T 2odv_A 129 IVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDGR 195 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445554 58888888777662 13345777788899999999998888888888888887654
No 37
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=37.28 E-value=1.2e+02 Score=21.96 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=14.5
Q ss_pred chhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030692 136 TVEGQRRKLEESEQLLNQRKELIDKYMNSVEEL 168 (173)
Q Consensus 136 tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel 168 (173)
.|+...++.++.+..++.+.+-|..-....++|
T Consensus 37 ~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L 69 (216)
T 1u5p_A 37 SVNNLLKKHQLLEADISAHEDRLKDLNSQADSL 69 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333333333
No 38
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.23 E-value=22 Score=26.44 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhh
Q 030692 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSIS 127 (173)
Q Consensus 85 L~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS 127 (173)
+..-+-.|+.|++.|.-+....--+.=.+++|+.|-+|+--+-
T Consensus 61 v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~~~E~~~Wm~GlK 103 (118)
T 2yru_A 61 VKKRMALLVQELLHHQWDAADDIHRSLMVDHVTEVSQWMVGVK 103 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSTHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCcHHHHHhHHHHHH
Confidence 5666778889999998888877777777888999988885543
No 39
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=34.33 E-value=1.2e+02 Score=21.39 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=22.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhhhccc
Q 030692 102 DQQSDALVNELNNHFEKCQQLLSSISESLD 131 (173)
Q Consensus 102 DQ~sDaLv~ELts~F~kcQQlLnSiS~Si~ 131 (173)
+++ .+.|+++...++.|..||..|.--+.
T Consensus 45 e~r-k~~i~~ie~~ldEA~eLl~qMelE~r 73 (102)
T 2qyw_A 45 EEK-KKLVRDFDEKQQEANETLAEMEEELR 73 (102)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 67789999999999999998875444
No 40
>3ogi_B ESXO, putative ESAT-6-like protein 7; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} PDB: 4gzr_B
Probab=33.44 E-value=32 Score=25.72 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhcccccccchhh
Q 030692 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEG 139 (173)
Q Consensus 85 L~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~g 139 (173)
|.-.|++|+.+==.|+---.|+.|+.+.+.-|.+..-.|+||+.-|...+-..+.
T Consensus 34 l~~~v~~iaga~W~G~Aq~sf~~lM~rwn~a~r~l~~aL~sI~dnir~nA~~ye~ 88 (99)
T 3ogi_B 34 MWASAQNISGAGWSGMAEATSLDTMAQMNQAFRNIVNMLHGVRDGLVRDANNYEQ 88 (99)
T ss_dssp HHHHHHCCC----CCCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 5566777777766788888899999999999999999999999887766555443
No 41
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=33.13 E-value=1.1e+02 Score=20.59 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=51.3
Q ss_pred hhhhhhHHHHHHHHHHHhhhCCcc---ccchHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHH
Q 030692 79 LASNFHLLHLMENLADAIENGTRD---QQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRK 155 (173)
Q Consensus 79 LASHfhL~~Lve~LaDaie~GtRD---Q~sDaLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRr 155 (173)
++.-+..+....+.+..+++-... ..++.+.+|...|.+++-..+..+.|......-.+.+=..-.+-.+..+.-=+
T Consensus 19 l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~e~l~~~l~~E~ 98 (149)
T 2qqy_A 19 LAGEYSAIIMYNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRVKQAEDVREMLEYARQSEY 98 (149)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 444444444555555554321111 12355667888888898888888876543321112211233455677777777
Q ss_pred HHHHHHHHHHHH
Q 030692 156 ELIDKYMNSVEE 167 (173)
Q Consensus 156 dli~kYr~sVEe 167 (173)
+++..|++.++.
T Consensus 99 ~~~~~~~~~~~~ 110 (149)
T 2qqy_A 99 ETIKRYEKRKEQ 110 (149)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 42
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=33.02 E-value=1.5e+02 Score=21.94 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 030692 106 DALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSV 165 (173)
Q Consensus 106 DaLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sV 165 (173)
++-+..+...|++....|..+...+. ..+ ..+.+....|..=++.+..|+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~l~~L~~~l~------~~~-~~l~~~~~~l~~Y~~~~~~~~~a~ 222 (258)
T 2yfa_A 170 SANEQAALRQLDAALADTDNLKRQLP------SED-ARLQQFENAVLAYRDAVRQFRDAV 222 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCG------GGH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC------chH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777778877766653 233 445555555555555555554444
No 43
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=32.98 E-value=82 Score=24.22 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHH
Q 030692 107 ALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQ 153 (173)
Q Consensus 107 aLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~q 153 (173)
+.+.-|..+++.+.+|+.-+..-+..-..-+.--+..|+|+++.++.
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~r 132 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778888887777755442222222234445555555544
No 44
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=32.68 E-value=22 Score=22.99 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhccc
Q 030692 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLD 131 (173)
Q Consensus 85 L~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~Si~ 131 (173)
|-..|+.|.+.-++... ..+++..+++...|.+...+|++|+..|.
T Consensus 35 L~~~v~~L~~~W~G~a~-~af~~~~~~~~~~~~~~~~~L~~i~~~L~ 80 (99)
T 3zbh_A 35 LDQMSHTLQGIWEGASS-EAFIQQYQELRPSFEKMAVLLNEVGQQLH 80 (99)
T ss_dssp HHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554443333 34466667777778888888888877665
No 45
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=32.48 E-value=1.5e+02 Score=21.91 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=14.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030692 142 RKLEESEQLLNQRKELIDKYMNSVEELIE 170 (173)
Q Consensus 142 ~~LeEseqlL~qRrdli~kYr~sVEel~~ 170 (173)
..+++...++.+=+.-+..-++.++.+++
T Consensus 107 ~~~~~~~~~l~~l~~e~~~v~~~L~~~~~ 135 (153)
T 3us6_A 107 QNIDACRRCLQQVKQEYLLVKNKLETLLR 135 (153)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444444444444443
No 46
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=32.35 E-value=61 Score=24.02 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhCCccccchHHHHHHHHHHHHH
Q 030692 87 HLMENLADAIENGTRDQQSDALVNELNNHFEKC 119 (173)
Q Consensus 87 ~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kc 119 (173)
.|.+.|.|.|..| .-++.|...+-..|+|+
T Consensus 13 aL~dtLdEli~~~---~Isp~la~kVL~~FDks 42 (108)
T 1nvp_D 13 SLQESLDELIQSQ---QITPQLALQVLLQFDKA 42 (108)
T ss_dssp HHHHHHHHHHHTT---SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence 6899999999998 56789999999999996
No 47
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=32.28 E-value=1.5e+02 Score=21.77 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=19.4
Q ss_pred chhhhhcchHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 030692 136 TVEGQRRKLEESEQLLNQ-RKELIDKYMNSVEELIE 170 (173)
Q Consensus 136 tV~gQk~~LeEseqlL~q-Rrdli~kYr~sVEel~~ 170 (173)
.|+...++.++.+..++. +.+-|.......++|+.
T Consensus 35 ~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~ 70 (218)
T 3edu_A 35 HVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID 70 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 555566666666665554 45555555555555544
No 48
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=31.54 E-value=62 Score=24.60 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhCCccccchHHHHHHHHHHHHH
Q 030692 87 HLMENLADAIENGTRDQQSDALVNELNNHFEKC 119 (173)
Q Consensus 87 ~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kc 119 (173)
.|.+.|.|.|..| .-++.|...+-..|+|+
T Consensus 17 aL~dtLdEli~~~---~Isp~la~kVL~~FDks 46 (121)
T 1nh2_D 17 SLVDALDTLISDG---RIEASLAMRVLETFDKV 46 (121)
T ss_dssp HHHHHHHHHHHTT---SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence 6899999999998 56789999999999996
No 49
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=31.32 E-value=48 Score=21.49 Aligned_cols=43 Identities=9% Similarity=0.185 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhccc
Q 030692 88 LMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLD 131 (173)
Q Consensus 88 Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~Si~ 131 (173)
.|+.|...-++...+. +.+..+++...|++..++|+.|+..|.
T Consensus 34 ~v~~l~~~W~G~A~~a-f~~~~~~w~~~~~~~~~~L~~i~~~l~ 76 (94)
T 3fav_B 34 SLTKLAAAWGGSGSEA-YQGVQQKWDATATELNNALQNLARTIS 76 (94)
T ss_dssp HHHHTGGGGTCTTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333332 356666666667777777777665554
No 50
>2mhr_A Myohemerythrin; oxygen binding; 1.30A {Themiste zostericola} SCOP: a.24.4.1 PDB: 1a7d_A 1a7e_A
Probab=30.78 E-value=51 Score=23.11 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhc
Q 030692 82 NFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISES 129 (173)
Q Consensus 82 HfhL~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~S 129 (173)
|=.|+.+|.+|.++..++ ..+.|++-...||..=+.|+..+.-+
T Consensus 25 Hk~L~~~in~l~~a~~~~----~l~~L~~y~~~HF~~EE~~M~~~~yp 68 (118)
T 2mhr_A 25 HKKIFKGIFDCIRDNSAP----NLATLVKVTTNHFTHEEAMMDAAKYS 68 (118)
T ss_dssp HHHHHHHHHHHHHSCCHH----HHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcchh----HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 667899999999995333 28899999999999999999888643
No 51
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=30.00 E-value=82 Score=24.34 Aligned_cols=45 Identities=16% Similarity=0.380 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHHHHHH
Q 030692 108 LVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYM 162 (173)
Q Consensus 108 Lv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr 162 (173)
.-+||..+.+.-++++..+..|.. .||.++|+....|...++++-
T Consensus 6 ~~ee~~e~L~~~e~l~~el~~tWe----------eKl~~te~~~~e~~~~l~~~g 50 (184)
T 4egx_A 6 FSEEAIERLKETEKIIAELNETWE----------EKLRRTEAIRMEREALLAEMG 50 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHHcC
Confidence 345667777778888887766643 678889998889988888764
No 52
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=29.73 E-value=55 Score=20.90 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhccccc
Q 030692 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTK 133 (173)
Q Consensus 85 L~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~Si~sk 133 (173)
|-..|+.|.+.-++...+ .+.+..+++...|.+...+|..|+..|..-
T Consensus 32 L~~~~~~L~~~W~G~a~~-af~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 79 (97)
T 2vs0_A 32 LTRAQGEIAANWEGQAFS-RFEEQFQQLSPKVEKFAQLLEEIKQQLNST 79 (97)
T ss_dssp HHHHHHHHHHHSCSSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555553 456666777777888888888887776533
No 53
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=29.56 E-value=1.5e+02 Score=21.33 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhhccccccc
Q 030692 114 NHFEKCQQLLSSISESLDTKAM 135 (173)
Q Consensus 114 s~F~kcQQlLnSiS~Si~sk~~ 135 (173)
..|.+...+|+.++..|+++.-
T Consensus 7 ~~~~~~~~~l~~~a~~Lk~~~~ 28 (171)
T 2zvf_A 7 EAVEEMERLLREASSILRVEPA 28 (171)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTT
T ss_pred HHHHHHHHHHHHHHHHhCCChH
Confidence 4577788888999988887643
No 54
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=29.26 E-value=1.2e+02 Score=23.14 Aligned_cols=21 Identities=0% Similarity=-0.089 Sum_probs=8.2
Q ss_pred chhhhhcchHHHHHHHHHHHH
Q 030692 136 TVEGQRRKLEESEQLLNQRKE 156 (173)
Q Consensus 136 tV~gQk~~LeEseqlL~qRrd 156 (173)
.|..+.++.+..+..++.+++
T Consensus 38 ~~~~ll~kh~~~~~el~~~~~ 58 (326)
T 3kbt_A 38 GAIVMLKRHLRQQRAVEDYGR 58 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333
No 55
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=28.58 E-value=2e+02 Score=22.02 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=23.9
Q ss_pred chhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030692 136 TVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIE 170 (173)
Q Consensus 136 tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~ 170 (173)
+|+.+.++.++.+..++.|++-+.+-...-+.|+.
T Consensus 253 ~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~ 287 (323)
T 3edv_A 253 SVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLA 287 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667777777777777777766666666666654
No 56
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=27.86 E-value=1.5e+02 Score=24.43 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q 030692 108 LVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESE---QLLNQRKELIDKYMNSVEELIEY 171 (173)
Q Consensus 108 Lv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEse---qlL~qRrdli~kYr~sVEel~~~ 171 (173)
|=+|+...=..|..+|..+...|++ .+|++.. +.|..+..=+...|..+|+|+..
T Consensus 139 Le~e~~~l~~~~~~~L~~L~~~i~~---------~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLdd 196 (261)
T 3rkg_A 139 LETDFKLHSQICIQILNDLENEVNR---------LKLRHLLIKSKDLTLFYQKTLLIRDLLDELLEN 196 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444445566677777766553 3444433 34555555555688888888764
No 57
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=26.99 E-value=1.1e+02 Score=18.68 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030692 152 NQRKELIDKYMNSVEELI 169 (173)
Q Consensus 152 ~qRrdli~kYr~sVEel~ 169 (173)
+.=.+-+.+-..+|++|+
T Consensus 94 ~~i~~~~~~l~~~i~~ll 111 (114)
T 3zcc_A 94 ESINKDIEECNAIIEQFI 111 (114)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344445555555554
No 58
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=26.93 E-value=1.2e+02 Score=21.78 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhc
Q 030692 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISES 129 (173)
Q Consensus 85 L~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~S 129 (173)
+.|-+|++.|.+..|...- ++++++.|-.-++....++..+...
T Consensus 62 lah~lE~~l~~lr~g~~~~-~~~l~~~l~~~~D~l~~~l~~~~~~ 105 (139)
T 2ld6_A 62 LCHTLENILDKARNSEIKI-TSDLLDKIFAGVDMITRMVDKIVSE 105 (139)
T ss_dssp HHHHHHHHHHHHHHTSCCC-CSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5667888888888887654 4788999999999999999988643
No 59
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.86 E-value=55 Score=28.87 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q 030692 109 VNELNNHFEKCQQLLSSISES 129 (173)
Q Consensus 109 v~ELts~F~kcQQlLnSiS~S 129 (173)
+.||.+-=.....|+++|..+
T Consensus 47 l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 47 LQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444
No 60
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=26.24 E-value=1.5e+02 Score=21.59 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=39.2
Q ss_pred hhCCccccchHHHHHHHHHHHHHHHHHhhhhhccc-ccccchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 030692 97 ENGTRDQQSDALVNELNNHFEKCQQLLSSISESLD-TKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSV 165 (173)
Q Consensus 97 e~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~Si~-sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sV 165 (173)
..|..+..-++|+.||.+.-.++|-.|-.|....+ ...+ |.|.=++=+.=-.+|.+|+..|
T Consensus 28 ~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~--------l~elL~~ND~ln~vi~rY~~~~ 89 (111)
T 1wr6_A 28 SQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNS--------LGDILQASDNLSRVINSYKTII 89 (111)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSS--------HHHHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH--------HHHHHHHhHHHHHHHHHHHHHh
Confidence 34555444458999999999999999998887643 2222 2333333333445788897754
No 61
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=26.04 E-value=1.4e+02 Score=24.35 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHhhhCCccccchHH---HHHHHHHHHHHHHHHhhhh
Q 030692 84 HLLHLMENLADAIENGTRDQQSDAL---VNELNNHFEKCQQLLSSIS 127 (173)
Q Consensus 84 hL~~Lve~LaDaie~GtRDQ~sDaL---v~ELts~F~kcQQlLnSiS 127 (173)
-||.-..++-+.|++++-..+|++. |...-..|++|..+++.++
T Consensus 35 ~lF~~a~~~~~~le~~~~~~~S~~~Q~~v~~~i~~le~~~~~v~~l~ 81 (243)
T 3qc1_A 35 ELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLD 81 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3666677778889998876777754 4445567999999999876
No 62
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=25.96 E-value=85 Score=22.31 Aligned_cols=53 Identities=9% Similarity=0.260 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030692 106 DALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEEL 168 (173)
Q Consensus 106 DaLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel 168 (173)
.....||.+-++..+.-|.-+..||. .++.- ...-+..||..+++-++-|+.|
T Consensus 35 ~~~~~El~~~l~el~e~l~DL~~SI~----i~e~~------~~~EI~~Rk~~v~~l~~~i~~l 87 (95)
T 2c5k_T 35 DDQEEEIQDILKDVEETIVDLDRSII----VMKRD------ENEDVSGREAQVKNIKQQLDAL 87 (95)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH----HHHTS------TTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcC------CHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888887766 23321 3444566777777776666654
No 63
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=25.60 E-value=1.9e+02 Score=20.80 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=25.5
Q ss_pred cchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030692 135 MTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEY 171 (173)
Q Consensus 135 ~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~ 171 (173)
-+|....++.+..+..+..+.+.|..-....++|+..
T Consensus 142 ~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~~ 178 (216)
T 1u5p_A 142 TGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDD 178 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3677777777777777777777666666666666543
No 64
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=25.36 E-value=1.9e+02 Score=20.85 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 030692 144 LEESEQLLNQRKELIDKYMNSVEE 167 (173)
Q Consensus 144 LeEseqlL~qRrdli~kYr~sVEe 167 (173)
++.....+.+=++.+.+-+..++.
T Consensus 110 ~~~~~~~l~~l~~e~~~~~~~L~~ 133 (149)
T 1yvi_A 110 RDGCLMALAVVRNDFYDLRNKFQT 133 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333333333
No 65
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=25.24 E-value=1.1e+02 Score=23.80 Aligned_cols=47 Identities=13% Similarity=0.242 Sum_probs=29.4
Q ss_pred HhhhhhhhHHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhh
Q 030692 77 QSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSIS 127 (173)
Q Consensus 77 qsLASHfhL~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS 127 (173)
..++.- |||++++|.-|++.+..| .++|+.-+..-..+...+|....
T Consensus 69 e~~~~~--LLpVlDnlerAl~~~~~~--~~~l~~Gv~m~~~~l~~~L~k~G 115 (177)
T 3a6m_A 69 LKALRA--LLPVLDDLDRALEFAEAS--PESIRQGVRAIRDGFFRILAGLG 115 (177)
T ss_dssp HHHHHH--HHHHHHHHHHHHHTGGGC--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH--HHHHHhHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHCC
Confidence 344444 999999999999987655 44555544444444445554443
No 66
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=24.87 E-value=2.3e+02 Score=23.00 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcc------cccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030692 109 VNELNNHFEKCQQLLSSISESL------DTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIEY 171 (173)
Q Consensus 109 v~ELts~F~kcQQlLnSiS~Si------~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~~ 171 (173)
...+...++.+..||+....-| +...-.|+...++.+..+.-|..+.+-|..-....++|++.
T Consensus 133 ~~~f~~~~~~~~~Wl~e~e~~l~~~~~~g~dl~~v~~ll~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~ 201 (476)
T 1hci_A 133 AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNEL 201 (476)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHCCGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC
Confidence 3444444555666666555444 22333677788888888888887777777766666777654
No 67
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=24.60 E-value=1.1e+02 Score=20.12 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhccccc
Q 030692 88 LMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTK 133 (173)
Q Consensus 88 Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~Si~sk 133 (173)
.|..|.+.-++...+ ...+...+...-|++...+|++|+..|..-
T Consensus 35 ~v~~L~~~W~G~A~~-ay~~~~~~W~~~~~~l~~~L~~i~~~l~~a 79 (96)
T 3h6p_C 35 EQAVLSSAWQGDTGI-TYQGWQTQWNQALEDLVRAYQSMSGTHESN 79 (96)
T ss_dssp HHHHTGGGCCTTSSS-CHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHhhCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333 347788888899999999999998877643
No 68
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.59 E-value=1.2e+02 Score=24.56 Aligned_cols=44 Identities=16% Similarity=0.324 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhh
Q 030692 84 HLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSIS 127 (173)
Q Consensus 84 hL~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS 127 (173)
-||+++++|.-|++....+....+|+.-+..-+.+...+|....
T Consensus 114 ~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~l~~~L~k~G 157 (213)
T 4ani_A 114 DLLPVLDNFERALKIETDNEQAKSILQGMEMVYRSLVDALKKEG 157 (213)
T ss_dssp HHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHCC
Confidence 59999999999998766555556666555555555555555544
No 69
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=24.31 E-value=24 Score=21.10 Aligned_cols=14 Identities=50% Similarity=0.617 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 030692 153 QRKELIDKYMNSVEE 167 (173)
Q Consensus 153 qRrdli~kYr~sVEe 167 (173)
-||.||.+|.. +||
T Consensus 9 irkalmg~yd~-~e~ 22 (26)
T 2gpv_G 9 IRKALMGKYDQ-WEE 22 (26)
T ss_pred HHHHHccchhh-Hhh
Confidence 48999999988 665
No 70
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=23.83 E-value=1.4e+02 Score=28.12 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccccc-------cchhhhhcchHHHHHHHHHHHHHHH
Q 030692 104 QSDALVNELNNHFEKCQQLLSSISESLDTKA-------MTVEGQRRKLEESEQLLNQRKELID 159 (173)
Q Consensus 104 ~sDaLv~ELts~F~kcQQlLnSiS~Si~sk~-------~tV~gQk~~LeEseqlL~qRrdli~ 159 (173)
+.++++..|..+.+|.+.-+.++.+-|++.. -.|+.-|.||++++..+..=++.|+
T Consensus 797 d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (862)
T 1gax_A 797 DVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALS 859 (862)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999999999999998887732 3577778888887776655444443
No 71
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=23.50 E-value=2.1e+02 Score=20.68 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhc
Q 030692 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISES 129 (173)
Q Consensus 85 L~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~S 129 (173)
+.|-+|++-+.+..|..+- ++++++.|..-++....++..+...
T Consensus 65 lah~lE~~l~~~r~g~~~~-~~~l~~~l~~~~D~l~~~l~~~~~~ 108 (146)
T 1i5n_A 65 TTHLMENLLDEARRGEMQL-NTDIINLFLETKDIMQEQLDAYKNS 108 (146)
T ss_dssp HHHHHHHHHHHHHTTSSCC-CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5567788888888887654 4789999999999999999988653
No 72
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=23.02 E-value=2.1e+02 Score=20.31 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=19.3
Q ss_pred ccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030692 134 AMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIE 170 (173)
Q Consensus 134 ~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~ 170 (173)
...|....+|.+..+..|.-+.+-|..-.+.-++|+.
T Consensus 77 ~~~v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li~ 113 (149)
T 3f31_A 77 PTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMIS 113 (149)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555555555555554444444444
No 73
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=22.89 E-value=1.2e+02 Score=23.46 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccc------------chhhhhcchHHHHHHHHHHHHHH
Q 030692 107 ALVNELNNHFEKCQQLLSSISESLDTKAM------------TVEGQRRKLEESEQLLNQRKELI 158 (173)
Q Consensus 107 aLv~ELts~F~kcQQlLnSiS~Si~sk~~------------tV~gQk~~LeEseqlL~qRrdli 158 (173)
..-+++..+|++++.|++.|..+=..|.+ .+...+-+|+-.+.+.+.++.++
T Consensus 124 ~~y~~~~~rl~~I~~L~~~I~~a~d~K~~aDLq~rI~aE~a~iqne~~klq~~~~~~~a~~~~~ 187 (213)
T 1r8i_A 124 KAYNNQMQELSDMQALTEQIKSTPDLKSIADLQARIQTSQGAIQGEQAKLNLMNMLQQSQDKLL 187 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999988877555544 55666777777766666544444
No 74
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.85 E-value=1.5e+02 Score=21.67 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=21.4
Q ss_pred chhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030692 136 TVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIE 170 (173)
Q Consensus 136 tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~ 170 (173)
+++..+..|++....|..+.+-+.+..+.+++++.
T Consensus 77 ~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 77 ETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666553
No 75
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=22.53 E-value=4.5e+02 Score=24.11 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHH
Q 030692 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELI 158 (173)
Q Consensus 85 L~~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli 158 (173)
|-++++++..++..|++. ++.+++|..+|++...--.-|...... .-++|.+-.|+.=.++-
T Consensus 471 l~~~~~~~~~~~~~g~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~e~~pwl~~~~~~~ 532 (737)
T 2v5d_A 471 LRAKMDELWNKLSSKEDA---SALIEELYGEFARMEEACNNLKANLPE---------VALEECSRQLDELITLA 532 (737)
T ss_dssp HHHHHHHHHHHHTTSCCC---HHHHHHHHHHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCch---HHHHHHHHHHHHHHHHHHHHHHhhCch---------HHHHHHHHHHHHHHHHH
Confidence 556788888888888873 466788888888877766666544331 12677776666655554
No 76
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=22.36 E-value=2.4e+02 Score=20.81 Aligned_cols=60 Identities=12% Similarity=0.249 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhccccc----ccchhhhhcchHHHHHHHHHHHHHHHHHHHH
Q 030692 104 QSDALVNELNNHFEKCQQLLSSISESLDTK----AMTVEGQRRKLEESEQLLNQRKELIDKYMNS 164 (173)
Q Consensus 104 ~sDaLv~ELts~F~kcQQlLnSiS~Si~sk----~~tV~gQk~~LeEseqlL~qRrdli~kYr~s 164 (173)
..++|+.+++..+.+|...|..|...+..- .-..+. +.+---+..|.+.=+++|.+|...
T Consensus 82 ~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~-Rir~~q~~~L~~kf~~~m~~yq~~ 145 (180)
T 1s94_A 82 ELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADL-RIRKTQYSTISRKFVEVMSDYNTT 145 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998653210 011111 111122445555566777777654
No 77
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=22.28 E-value=3.1e+02 Score=22.17 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhhccccc----ccchhhhhcchHHHHHHHHHHHHHHHHHH
Q 030692 117 EKCQQLLSSISESLDTK----AMTVEGQRRKLEESEQLLNQRKELIDKYM 162 (173)
Q Consensus 117 ~kcQQlLnSiS~Si~sk----~~tV~gQk~~LeEseqlL~qRrdli~kYr 162 (173)
+.+..||+.....|++. .-+++.+.+++++.+..+...+..|..-.
T Consensus 377 ~~~~~Wl~e~e~~l~~~~~~~~~~le~~l~~~~~~~~el~~~~~~~~~l~ 426 (476)
T 1hci_A 377 NAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLE 426 (476)
T ss_dssp HHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444544444334332 33566666666666665555555555443
No 78
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=22.24 E-value=2.4e+02 Score=20.78 Aligned_cols=25 Identities=4% Similarity=0.113 Sum_probs=16.0
Q ss_pred hHHHH-HHHHHHHHHHHHHhhhhhcc
Q 030692 106 DALVN-ELNNHFEKCQQLLSSISESL 130 (173)
Q Consensus 106 DaLv~-ELts~F~kcQQlLnSiS~Si 130 (173)
++.+. +....+++..+.|..+...+
T Consensus 47 ~~~~~~~~~~~l~~~~~~l~~~~~~~ 72 (258)
T 2yfa_A 47 DDTAAANTLAKLDAFSKQQAYLATTF 72 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566 66666777777777665543
No 79
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=22.08 E-value=2.3e+02 Score=20.52 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=18.7
Q ss_pred ccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030692 134 AMTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELIE 170 (173)
Q Consensus 134 ~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~~ 170 (173)
.-+|....+|-+..+..|.-+++-+..-.+.-++|+.
T Consensus 87 ~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li~ 123 (161)
T 3lbx_A 87 PTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFT 123 (161)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355555555555555555555555444444444443
No 80
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=21.82 E-value=1.5e+02 Score=26.33 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 030692 87 HLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVE 166 (173)
Q Consensus 87 ~Lve~LaDaie~GtRDQ~sDaLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVE 166 (173)
.|.+.|.....+-.++. -+.|+++|....++|+.-|..+.....+ +-+.++.- | -+++.+|.+.++
T Consensus 297 ~L~~~L~~~L~~~i~~~-lP~l~~~i~~~l~~~~~el~~lg~~~~~---~~~~~~~~-------l---~~~~~~f~~~~~ 362 (608)
T 3szr_A 297 CLAEKLTSELITHICKS-LPLLENQIKETHQRITEELQKYGVDIPE---DENEKMFF-------L---IDKVNAFNQDIT 362 (608)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTSCCCCCC---SHHHHHHH-------H---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHcCCCCCC---CHHHHHHH-------H---HHHHHHHHHHHH
Confidence 35555555555555544 5889999999999999999988765432 22222111 1 146777888887
Q ss_pred HHHhcC
Q 030692 167 ELIEYE 172 (173)
Q Consensus 167 el~~~~ 172 (173)
..+.++
T Consensus 363 ~~~~g~ 368 (608)
T 3szr_A 363 ALMQGE 368 (608)
T ss_dssp HHHSSC
T ss_pred HHhCCC
Confidence 777664
No 81
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=21.08 E-value=1.1e+02 Score=23.12 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=20.2
Q ss_pred Hhhhhhcccccccc---hhhhhcchHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q 030692 123 LSSISESLDTKAMT---VEGQRRKLEESEQLL----NQRKELIDKYMNSVEELIE 170 (173)
Q Consensus 123 LnSiS~Si~sk~~t---V~gQk~~LeEseqlL----~qRrdli~kYr~sVEel~~ 170 (173)
|.|+.+||.+..+. +--||..|+.+-..| ..|..-|.....-+++.+|
T Consensus 6 La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk 60 (101)
T 1d7m_A 6 LAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLK 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443332 233454444332222 2454444444444444444
No 82
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.02 E-value=2.5e+02 Score=20.46 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=22.7
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030692 141 RRKLEESEQLLNQRKELIDKYMNSVEELI 169 (173)
Q Consensus 141 k~~LeEseqlL~qRrdli~kYr~sVEel~ 169 (173)
+++++|....|+.|.+.+.+-.+.+++.+
T Consensus 93 E~~~~eA~~~l~~ri~~l~~~l~~l~~~l 121 (151)
T 2zdi_C 93 ERSIDEAISFLEKRLKEYDEAIKKTQGAL 121 (151)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988877666665544
No 83
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=20.77 E-value=1.5e+02 Score=21.04 Aligned_cols=12 Identities=42% Similarity=0.548 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q 030692 149 QLLNQRKELIDK 160 (173)
Q Consensus 149 qlL~qRrdli~k 160 (173)
+.-++|+.+|+.
T Consensus 32 ~~~~~R~~iI~s 43 (85)
T 3fwc_B 32 SEANYRKDFIDT 43 (85)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466778877765
No 84
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=20.68 E-value=1.7e+02 Score=19.19 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 030692 113 NNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVE 166 (173)
Q Consensus 113 ts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVE 166 (173)
+...++|+.++.-...-=.+-...+..|+..|+-++..|..-.+-+.+=++.+-
T Consensus 8 ~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 8 TQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 455778888887655211122247889999999999999888877777666553
No 85
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.42 E-value=3.2e+02 Score=21.59 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=41.3
Q ss_pred hCCcccc-chHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 030692 98 NGTRDQQ-SDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKELIDKYMNSVE 166 (173)
Q Consensus 98 ~GtRDQ~-sDaLv~ELts~F~kcQQlLnSiS~Si~sk~~tV~gQk~~LeEseqlL~qRrdli~kYr~sVE 166 (173)
.|..+.- .++|+.||.+.-.++|.-|-.|....+.. | .-|.|.=+.=+.=-.+|.+|+..+.
T Consensus 97 pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~dd----e---e~L~elL~~ND~Ln~vl~kY~~~~~ 159 (186)
T 1oxz_A 97 QGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDN----D---EALAEILQANDNLTQVINLYKQLVR 159 (186)
T ss_dssp SSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSC----H---HHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred CCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCC----H---HHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4555554 57999999999999999998888663211 1 1134444444455568899987764
No 86
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=20.32 E-value=55 Score=19.95 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=12.5
Q ss_pred hhhcchHHHHHHHHHHH
Q 030692 139 GQRRKLEESEQLLNQRK 155 (173)
Q Consensus 139 gQk~~LeEseqlL~qRr 155 (173)
-=|+|+||-++.|+.|.
T Consensus 10 lLKKKIEEQr~i~~~~~ 26 (29)
T 3lcn_C 10 LLKKKIEEQREILQKTH 26 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34778888888887764
No 87
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=20.19 E-value=2.6e+02 Score=23.55 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhhhcccccc-cchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030692 112 LNNHFEKCQQLLSSISESLDTKA-MTVEGQRRKLEESEQLLNQRKELIDKYMNSVEELI 169 (173)
Q Consensus 112 Lts~F~kcQQlLnSiS~Si~sk~-~tV~gQk~~LeEseqlL~qRrdli~kYr~sVEel~ 169 (173)
+...|+++.++...-+.....+- =++.--.+-|.-...+|..|+..+.||+++ ++++
T Consensus 258 l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea-~kl~ 315 (386)
T 4akv_A 258 TGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKES-QRMS 315 (386)
T ss_dssp HHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 44567888777776553311100 023334445555666788888888888887 3443
Done!