Citrus Sinensis ID: 030693
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 173 | 2.2.26 [Sep-21-2011] | |||||||
| P41919 | 221 | GTP-binding nuclear prote | N/A | no | 1.0 | 0.782 | 0.994 | 1e-101 | |
| Q8H156 | 221 | GTP-binding nuclear prote | yes | no | 1.0 | 0.782 | 0.994 | 1e-101 | |
| P41917 | 221 | GTP-binding nuclear prote | yes | no | 1.0 | 0.782 | 0.994 | 1e-101 | |
| P38547 | 221 | GTP-binding nuclear prote | N/A | no | 1.0 | 0.782 | 0.994 | 1e-100 | |
| P38546 | 221 | GTP-binding nuclear prote | N/A | no | 1.0 | 0.782 | 0.994 | 1e-100 | |
| P41916 | 221 | GTP-binding nuclear prote | yes | no | 1.0 | 0.782 | 0.994 | 1e-100 | |
| P38548 | 221 | GTP-binding nuclear prote | N/A | no | 1.0 | 0.782 | 0.994 | 1e-100 | |
| Q7F7I7 | 221 | GTP-binding nuclear prote | yes | no | 1.0 | 0.782 | 0.982 | 1e-100 | |
| A2WSI7 | 221 | GTP-binding nuclear prote | N/A | no | 1.0 | 0.782 | 0.982 | 1e-100 | |
| P41918 | 221 | GTP-binding nuclear prote | N/A | no | 1.0 | 0.782 | 0.988 | 1e-100 |
| >sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Nicotiana tabacum (taxid: 4097) |
| >sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Arabidopsis thaliana (taxid: 3702) |
| >sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Arabidopsis thaliana (taxid: 3702) |
| >sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Solanum lycopersicum (taxid: 4081) |
| >sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Solanum lycopersicum (taxid: 4081) |
| >sp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Arabidopsis thaliana (taxid: 3702) |
| >sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Vicia faba (taxid: 3906) |
| >sp|Q7F7I7|RAN1_ORYSJ GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/173 (98%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAG 173
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSI7|RAN1_ORYSI GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/173 (98%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAG 173
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/173 (98%), Positives = 171/173 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP QQ VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPGQQAVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Nicotiana tabacum (taxid: 4097) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 173 | ||||||
| 297743387 | 267 | unnamed protein product [Vitis vinifera] | 1.0 | 0.647 | 0.994 | 1e-100 | |
| 125526819 | 442 | hypothetical protein OsI_02827 [Oryza sa | 0.994 | 0.389 | 0.982 | 1e-99 | |
| 297738907 | 260 | unnamed protein product [Vitis vinifera] | 1.0 | 0.665 | 0.994 | 1e-99 | |
| 296081996 | 305 | unnamed protein product [Vitis vinifera] | 1.0 | 0.567 | 0.994 | 2e-99 | |
| 87046109 | 221 | putative RAN2 small Ras GTP-binding nucl | 1.0 | 0.782 | 0.994 | 2e-99 | |
| 20149262 | 221 | GTP-binding protein [Helianthus annuus] | 1.0 | 0.782 | 0.994 | 3e-99 | |
| 225442825 | 221 | PREDICTED: GTP-binding nuclear protein R | 1.0 | 0.782 | 0.994 | 3e-99 | |
| 344189955 | 221 | Ran3A-1 [Dimocarpus longan] gi|344189957 | 1.0 | 0.782 | 0.994 | 3e-99 | |
| 297792995 | 221 | hypothetical protein ARALYDRAFT_918663 [ | 1.0 | 0.782 | 0.994 | 3e-99 | |
| 1172836 | 221 | RecName: Full=GTP-binding nuclear protei | 1.0 | 0.782 | 0.994 | 3e-99 |
| >gi|297743387|emb|CBI36254.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 47 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 106
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 107 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 166
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 167 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 219
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125526819|gb|EAY74933.1| hypothetical protein OsI_02827 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 169/172 (98%), Positives = 172/172 (100%)
Query: 2 ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
ALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK
Sbjct: 223 ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 282
Query: 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 283 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPIV 342
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
LCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAG
Sbjct: 343 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAG 394
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738907|emb|CBI28152.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 40 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 99
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 100 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 159
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 160 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 212
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081996|emb|CBI21001.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 85 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 144
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 145 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 204
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 205 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 257
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87046109|gb|ABD17864.1| putative RAN2 small Ras GTP-binding nuclear protein [Allium cepa] | Back alignment and taxonomy information |
|---|
Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
Source: Allium cepa Species: Allium cepa Genus: Allium Family: Amaryllidaceae Order: Asparagales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20149262|gb|AAM12880.1|AF495716_1 GTP-binding protein [Helianthus annuus] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
Source: Helianthus annuus Species: Helianthus annuus Genus: Helianthus Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442825|ref|XP_002285307.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|344189955|gb|AEM97804.1| Ran3A-1 [Dimocarpus longan] gi|344189957|gb|AEM97805.1| Ran3A-2 [Dimocarpus longan] gi|344189959|gb|AEM97806.1| Ran3A-3 [Dimocarpus longan] gi|344189961|gb|AEM97807.1| Ran3A-4 [Dimocarpus longan] gi|344189963|gb|AEM97808.1| Ran3A-5 [Dimocarpus longan] gi|344189965|gb|AEM97809.1| Ran3A-6 [Dimocarpus longan] gi|344189967|gb|AEM97810.1| Ran3A-7 [Dimocarpus longan] gi|344189969|gb|AEM97811.1| Ran3A-8 [Dimocarpus longan] gi|344189971|gb|AEM97812.1| Ran3A-9 [Dimocarpus longan] gi|344189973|gb|AEM97813.1| Ran3A-10 [Dimocarpus longan] gi|344189975|gb|AEM97814.1| Ran3A-11 [Dimocarpus longan] gi|380690692|gb|AFD93406.1| Ras-like GTP-binding protein 3A-14 [Dimocarpus longan] gi|380690694|gb|AFD93407.1| Ras-like GTP-binding protein 3A-13 [Dimocarpus longan] gi|391358664|gb|AFM43803.1| Ran3A-12 [Dimocarpus longan] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
Source: Dimocarpus longan Species: Dimocarpus longan Genus: Dimocarpus Family: Sapindaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792995|ref|XP_002864382.1| hypothetical protein ARALYDRAFT_918663 [Arabidopsis lyrata subsp. lyrata] gi|297310217|gb|EFH40641.1| hypothetical protein ARALYDRAFT_918663 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1172836|sp|P41919.1|RANB1_TOBAC RecName: Full=GTP-binding nuclear protein Ran-B1 gi|496272|gb|AAA34109.1| small ras-related protein [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 173 | ||||||
| TAIR|locus:2147700 | 221 | RAN-1 "RAS-related nuclear pro | 1.0 | 0.782 | 0.994 | 1.4e-94 | |
| TAIR|locus:2147715 | 221 | RAN2 "RAS-related GTP-binding | 1.0 | 0.782 | 0.994 | 1.4e-94 | |
| TAIR|locus:2161600 | 221 | RAN3 "RAN GTPase 3" [Arabidops | 1.0 | 0.782 | 0.994 | 1.4e-94 | |
| SGD|S000005711 | 220 | GSP2 "GTP binding protein (mam | 1.0 | 0.786 | 0.820 | 1.3e-77 | |
| SGD|S000004284 | 219 | GSP1 "Ran GTPase" [Saccharomyc | 0.994 | 0.785 | 0.815 | 8.1e-76 | |
| WB|WBGene00004302 | 215 | ran-1 [Caenorhabditis elegans | 0.936 | 0.753 | 0.864 | 1.7e-75 | |
| UNIPROTKB|O17915 | 215 | ran-1 "GTP-binding nuclear pro | 0.936 | 0.753 | 0.864 | 1.7e-75 | |
| CGD|CAL0005360 | 214 | GSP1 [Candida albicans (taxid: | 0.947 | 0.766 | 0.829 | 1.5e-74 | |
| FB|FBgn0020255 | 216 | Ran "Ran" [Drosophila melanoga | 0.976 | 0.782 | 0.804 | 1.5e-74 | |
| UNIPROTKB|Q59P43 | 214 | GSP1 "RAN-like GTP binding pro | 0.947 | 0.766 | 0.829 | 1.5e-74 |
| TAIR|locus:2147700 RAN-1 "RAS-related nuclear protein-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
|
| TAIR|locus:2147715 RAN2 "RAS-related GTP-binding nuclear protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
|
| TAIR|locus:2161600 RAN3 "RAN GTPase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
|
| SGD|S000005711 GSP2 "GTP binding protein (mammalian Ranp homolog)" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 142/173 (82%), Positives = 157/173 (90%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
M+ P+Q + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY TIGVEVHPL F+TN G
Sbjct: 1 MSAPAQNNAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
+I+F WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct: 61 EIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG
Sbjct: 121 VLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 173
|
|
| SGD|S000004284 GSP1 "Ran GTPase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 141/173 (81%), Positives = 156/173 (90%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
M+ P+ + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY TIGVEVHPL F+TN G
Sbjct: 1 MSAPAANG-EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 59
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
+I+F WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct: 60 EIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 119
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG
Sbjct: 120 VLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 172
|
|
| WB|WBGene00004302 ran-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 140/162 (86%), Positives = 150/162 (92%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G+IRF WDTAG
Sbjct: 8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAG 67
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
QEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+
Sbjct: 68 QEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKD 127
Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 128 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLG 169
|
|
| UNIPROTKB|O17915 ran-1 "GTP-binding nuclear protein ran-1" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 140/162 (86%), Positives = 150/162 (92%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G+IRF WDTAG
Sbjct: 8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAG 67
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
QEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+
Sbjct: 68 QEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKD 127
Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 128 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLG 169
|
|
| CGD|CAL0005360 GSP1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 136/164 (82%), Positives = 150/164 (91%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
+ P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G+++F WDT
Sbjct: 4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLGFHTNFGELKFDVWDT 63
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
AGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 64 AGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 123
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 124 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVG 167
|
|
| FB|FBgn0020255 Ran "Ran" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 136/169 (80%), Positives = 151/169 (89%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF 64
+Q+ D P+FK V+VGDGGTGKTTFVKRH+TGEFEKKY T+GVEVHPL F TN G IRF
Sbjct: 2 AQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRF 61
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
WDTAGQEKFGGLRDGYYI GQCA+IMFDVT+R+TYKNVP WHRDL RVCENIPIVLCG
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 121
Query: 125 NKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
NKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVG 170
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|
| UNIPROTKB|Q59P43 GSP1 "RAN-like GTP binding protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
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Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 136/164 (82%), Positives = 150/164 (91%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
+ P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G+++F WDT
Sbjct: 4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLGFHTNFGELKFDVWDT 63
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
AGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 64 AGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 123
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 124 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVG 167
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3T054 | RAN_BOVIN | No assigned EC number | 0.8322 | 0.9306 | 0.7453 | yes | no |
| A2WSI7 | RAN1_ORYSI | No assigned EC number | 0.9826 | 1.0 | 0.7828 | N/A | no |
| P54766 | RAN1B_LOTJA | No assigned EC number | 0.9937 | 0.9306 | 0.7703 | N/A | no |
| P54765 | RAN1A_LOTJA | No assigned EC number | 0.9937 | 0.9306 | 0.7703 | N/A | no |
| P41917 | RAN2_ARATH | No assigned EC number | 0.9942 | 1.0 | 0.7828 | yes | no |
| P41916 | RAN1_ARATH | No assigned EC number | 0.9942 | 1.0 | 0.7828 | yes | no |
| P38546 | RAN1_SOLLC | No assigned EC number | 0.9942 | 1.0 | 0.7828 | N/A | no |
| P38547 | RAN2_SOLLC | No assigned EC number | 0.9942 | 1.0 | 0.7828 | N/A | no |
| P38542 | RAN_BRUMA | No assigned EC number | 0.8597 | 0.9479 | 0.7627 | N/A | no |
| Q7F7I7 | RAN1_ORYSJ | No assigned EC number | 0.9826 | 1.0 | 0.7828 | yes | no |
| Q9VZ23 | RAN_DROME | No assigned EC number | 0.8047 | 0.9768 | 0.7824 | yes | no |
| P38548 | RAN_VICFA | No assigned EC number | 0.9942 | 1.0 | 0.7828 | N/A | no |
| P41919 | RANB1_TOBAC | No assigned EC number | 0.9942 | 1.0 | 0.7828 | N/A | no |
| P41918 | RANA1_TOBAC | No assigned EC number | 0.9884 | 1.0 | 0.7828 | N/A | no |
| A2YEQ6 | RAN3_ORYSI | No assigned EC number | 0.8662 | 0.9942 | 0.7610 | N/A | no |
| A2Y7R5 | RAN2_ORYSI | No assigned EC number | 0.9768 | 1.0 | 0.7828 | N/A | no |
| Q6FR65 | GSP1_CANGA | No assigned EC number | 0.8313 | 0.9595 | 0.7757 | yes | no |
| Q4R4M9 | RAN_MACFA | No assigned EC number | 0.8322 | 0.9306 | 0.7453 | N/A | no |
| Q7GD79 | RAN2_ORYSJ | No assigned EC number | 0.9768 | 1.0 | 0.7828 | yes | no |
| Q74ZA9 | GSP1_ASHGO | No assigned EC number | 0.8313 | 0.9595 | 0.7757 | yes | no |
| P62827 | RAN_MOUSE | No assigned EC number | 0.8322 | 0.9306 | 0.7453 | yes | no |
| P38544 | RAN_ONCVO | No assigned EC number | 0.8292 | 0.9479 | 0.7627 | N/A | no |
| P52301 | RAN_XENLA | No assigned EC number | 0.8322 | 0.9306 | 0.7453 | N/A | no |
| P28748 | SPI1_SCHPO | No assigned EC number | 0.8143 | 0.9653 | 0.7731 | yes | no |
| P32836 | GSP2_YEAST | No assigned EC number | 0.8208 | 1.0 | 0.7863 | yes | no |
| P32835 | GSP1_YEAST | No assigned EC number | 0.8150 | 0.9942 | 0.7853 | yes | no |
| Q7RVL0 | GSP1_NEUCR | No assigned EC number | 0.8456 | 0.9364 | 0.7534 | N/A | no |
| P79735 | RAN_DANRE | No assigned EC number | 0.8260 | 0.9306 | 0.7488 | yes | no |
| P62828 | RAN_RAT | No assigned EC number | 0.8322 | 0.9306 | 0.7453 | yes | no |
| Q5R556 | RAN_PONAB | No assigned EC number | 0.8322 | 0.9306 | 0.7453 | yes | no |
| Q7ZZX9 | RAN_CARAU | No assigned EC number | 0.8312 | 0.9248 | 0.7441 | N/A | no |
| P62825 | RAN_CANFA | No assigned EC number | 0.8322 | 0.9306 | 0.7453 | yes | no |
| P62826 | RAN_HUMAN | No assigned EC number | 0.8322 | 0.9306 | 0.7453 | yes | no |
| O17915 | RAN_CAEEL | No assigned EC number | 0.8641 | 0.9364 | 0.7534 | yes | no |
| Q9P4E9 | GSP1_CANAW | No assigned EC number | 0.8292 | 0.9479 | 0.7663 | N/A | no |
| Q9YGC0 | RAN_SALSA | No assigned EC number | 0.8260 | 0.9306 | 0.7488 | N/A | no |
| Q8H156 | RAN3_ARATH | No assigned EC number | 0.9942 | 1.0 | 0.7828 | yes | no |
| P33519 | RAN_DICDI | No assigned EC number | 0.7562 | 0.9248 | 0.7547 | yes | no |
| Q8TFK3 | GSP1_YARLI | No assigned EC number | 0.8322 | 0.9306 | 0.7523 | yes | no |
| P42558 | RAN_CHICK | No assigned EC number | 0.8322 | 0.9306 | 0.7453 | yes | no |
| P38545 | RAN_PLAFA | No assigned EC number | 0.7251 | 0.9768 | 0.7897 | yes | no |
| Q6GL85 | RAN_XENTR | No assigned EC number | 0.8322 | 0.9306 | 0.7453 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00034551001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (267 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00014046001 | SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_10, whole genome shot [...] (1076 aa) | • | • | • | 0.824 | |||||
 | GSVIVG00034073001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (992 aa) | • | 0.800 | |||||||
 | GSVIVG00031073001 | SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (1207 aa) | • | 0.800 | |||||||
 | GSVIVG00026673001 | SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (504 aa) | • | 0.800 | |||||||
 | GSVIVG00025621001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (483 aa) | • | 0.800 | |||||||
 | GSVIVG00023150001 | RecName- Full=Elongation factor 1-alpha;; This protein promotes the GTP-dependent binding of am [...] (399 aa) | • | 0.800 | |||||||
 | GSVIVG00022233001 | SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (812 aa) | • | 0.800 | |||||||
 | GSVIVG00018636001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (144 aa) | • | 0.800 | |||||||
 | GSVIVG00018233001 | RecName- Full=Elongation factor 1-alpha;; This protein promotes the GTP-dependent binding of am [...] (399 aa) | • | 0.800 | |||||||
 | GSVIVG00034710001 | SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (81 aa) | • | 0.496 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 173 | |||
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 1e-150 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 1e-132 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 1e-126 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 1e-121 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 4e-65 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 8e-51 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 7e-42 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 6e-39 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 3e-36 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 5e-35 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 2e-34 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 1e-31 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 4e-31 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 7e-31 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 7e-31 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 2e-30 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 2e-30 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 3e-30 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 3e-30 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 9e-30 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 4e-28 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 9e-28 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 1e-27 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 6e-27 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 8e-27 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 4e-26 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 5e-26 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 9e-26 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 9e-26 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 9e-26 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 1e-25 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 5e-25 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 6e-25 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 1e-24 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 2e-24 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 2e-24 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 5e-24 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 8e-24 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 1e-23 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 1e-23 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 1e-23 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 1e-22 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 3e-22 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 5e-22 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 5e-22 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 9e-22 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 1e-21 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 1e-21 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 3e-21 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 3e-21 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 1e-20 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 2e-20 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 3e-20 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 8e-20 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 2e-19 | |
| cd04144 | 190 | cd04144, Ras2, Rat sarcoma (Ras) family 2 of small | 3e-19 | |
| cd04101 | 167 | cd04101, RabL4, Rab GTPase-like family 4 (Rab-like | 1e-18 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 2e-18 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 2e-18 | |
| cd01875 | 191 | cd01875, RhoG, Ras homolog family, member G (RhoG) | 2e-18 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 7e-18 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 9e-18 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 3e-17 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 5e-17 | |
| cd01870 | 175 | cd01870, RhoA_like, Ras homology family A (RhoA)-l | 5e-17 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 3e-16 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 9e-16 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 1e-15 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 3e-15 | |
| cd01871 | 174 | cd01871, Rac1_like, Ras-related C3 botulinum toxin | 1e-14 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 2e-14 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 2e-14 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 5e-14 | |
| cd01874 | 175 | cd01874, Cdc42, cell division cycle 42 (Cdc42) is | 1e-12 | |
| cd04133 | 173 | cd04133, Rop_like, Rho-related protein from plants | 1e-12 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 4e-12 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 1e-11 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 2e-11 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 6e-11 | |
| cd04135 | 174 | cd04135, Tc10, Rho GTPase TC10 (Tc10) | 1e-10 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 1e-10 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 2e-10 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 2e-10 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 2e-08 | |
| cd04173 | 221 | cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | 3e-08 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 5e-07 | |
| cd04148 | 219 | cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam | 8e-07 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 5e-06 | |
| cd04142 | 198 | cd04142, RRP22, Ras-related protein on chromosome | 5e-06 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 6e-06 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 9e-06 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 2e-05 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 3e-05 | |
| PLN00023 | 334 | PLN00023, PLN00023, GTP-binding protein; Provision | 9e-05 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 3e-04 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 4e-04 | |
| cd04103 | 158 | cd04103, Centaurin_gamma, Centaurin gamma (CENTG) | 6e-04 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 0.002 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 0.003 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 412 bits (1062), Expect = e-150
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
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Length = 219 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 367 bits (944), Expect = e-132
Identities = 137/168 (81%), Positives = 151/168 (89%)
Query: 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
QQ + P FKL++VGDGG GKTTFVKRHLTGEFEKKY PT+GVEVHPL F+TNCG I F
Sbjct: 2 QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFN 61
Query: 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
WDTAGQEKFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRD+ RVCENIPIVL GN
Sbjct: 62 VWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGN 121
Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
KVDVK+RQVKA+Q+TFHRKKNLQYY+ISAKSNYNFEKPFL+LAR+L
Sbjct: 122 KVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN 169
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Length = 215 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 350 bits (899), Expect = e-126
Identities = 140/160 (87%), Positives = 149/160 (93%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPLDF TN GKIRF WDTAGQE
Sbjct: 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
KFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 61 KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 120
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VK KQ+TFHRKKNLQYYEISAKSNYNFEKPFL+LARKL G
Sbjct: 121 VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160
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Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
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Score = 340 bits (872), Expect = e-121
Identities = 135/155 (87%), Positives = 142/155 (91%)
Query: 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78
VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G IRF WDTAGQEKFGGL
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 138
RDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK
Sbjct: 61 RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS 120
Query: 139 VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
+TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 121 ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 4e-65
Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLV+VGDGG GK++ + R +F ++Y PTIGV+ + + ++ WDTAGQE+
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-R 132
F LR YY Q ++++D+T+R +++NV W ++ R EN+PIVL GNK D+++ R
Sbjct: 61 FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120
Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
V ++ ++ L + E SAK+N N E+ F LAR++
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREI 160
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 159 bits (406), Expect = 8e-51
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 7/161 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK+V++GD G GKT+ + R + +F + Y+ TIGV+ + K++ WDTAGQE
Sbjct: 1 FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD-VKN 131
+F + YY AI+++DVT R +++N+ W +L NIPI+L GNK D
Sbjct: 61 RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120
Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
RQV +A+Q F ++ L ++E SAK+ N ++ F LAR
Sbjct: 121 RQVSTEEAQQ--FAKENGLLFFETSAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 7e-42
Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 13/166 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF----FTNCGK-IRFYCWD 68
FK++++GD G GK++ + R G+F ++Y+ TIGV DF GK ++ WD
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGV-----DFKTKTIEVDGKRVKLQIWD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
TAGQE+F + YY A++++D+T R +++N+ W ++L N+ I+L GNK
Sbjct: 56 TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKS 115
Query: 128 DVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D++ RQV ++ F + L ++E SAK+N N E+ F LAR++
Sbjct: 116 DLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 6e-39
Identities = 59/181 (32%), Positives = 84/181 (46%), Gaps = 21/181 (11%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
FK+V++GDGG GKTT + R + EF + Y PTIG I+ WDTAG
Sbjct: 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV 129
QE++ LR YY +I++D T R + + W +L + +++PI+L GNK+D+
Sbjct: 64 QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123
Query: 130 KNRQ-----------------VKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLARK 170
+ Q V A + N E SAKS N + F L RK
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183
Query: 171 L 171
L
Sbjct: 184 L 184
|
Length = 219 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-36
Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAGQ 72
K+++VG+G GK++ ++R + G F K Y+ TIGV+ F +R WDTAGQ
Sbjct: 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
E+F + YY Q I++F T R +++ + +W + C +IP+VL K+D+ ++
Sbjct: 62 EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121
Query: 133 Q-VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
+ ++ ++ L + S K ++N + F YLA K
Sbjct: 122 AVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 5e-35
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 27/172 (15%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCGKIR 63
KLV++G GG GK+ R ++GEF ++Y+PTI G LD
Sbjct: 1 KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYT-LDIL------- 52
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
DTAGQE+F +RD Y +G I+++ +T+R +++ + + RV E++PIV
Sbjct: 53 ----DTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIV 108
Query: 122 LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
L GNK D++N RQV ++ + + E SAK+N N ++ F L R++
Sbjct: 109 LVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-34
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYC 66
FKLV++GD GK++ V R + EF + E TIG F T + ++F
Sbjct: 1 QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAA-----FLTQTVNLDDTT-VKFEI 54
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 125
WDTAGQE++ L YY AI+++D+T+ +++ +W ++L NI I L GN
Sbjct: 55 WDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGN 114
Query: 126 KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K D RQV ++ + + L + E SAK+ N + F +ARKL
Sbjct: 115 KADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-31
Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++++GD G GK++ + R F++ TIGV+ + K++ WDTAGQE
Sbjct: 1 LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131
+F L YY Q I+++DVT R T+ N+ TW +L + +L GNK+D +N
Sbjct: 61 RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120
Query: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R+V ++ F RK N+ + E SAK+ ++ F L K+
Sbjct: 121 REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 4e-31
Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 27/166 (16%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----CGK-IRFYCWD 68
FK+V++GD G GK+ + R EF + TIGVE F T GK I+ WD
Sbjct: 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE-----FATRTIQIDGKTIKAQIWD 58
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVL 122
TAGQE++ + YY A++++D+T + T++NV W H D NI I+L
Sbjct: 59 TAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHAD-----SNIVIML 113
Query: 123 CGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
GNK D+++ R V +AK F K L + E SA N E+ F
Sbjct: 114 VGNKSDLRHLRAVPTEEAKA--FAEKNGLSFIETSALDGTNVEEAF 157
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-31
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 31/173 (17%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCGKI 62
+KLV++G GG GK+ + + G F Y+PTI G LD
Sbjct: 1 YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCL-LDIL------ 53
Query: 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
DTAGQE+F +RD Y G+ ++++ +T R +++ + + + RV +++PI
Sbjct: 54 -----DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI 108
Query: 121 VLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
VL GNK D+++ R V + K++ R+ + E SAK N ++ F L R
Sbjct: 109 VLVGNKCDLESERVVSTEEGKELA--RQWGCPFLETSAKERVNVDEAFYDLVR 159
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-31
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-----GKIRFYCWD 68
KLV +GD GKT+ + R + F+ +Y+ TIG+ DF + +R WD
Sbjct: 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGI-----DFLSKTMYVDDKTVRLQLWD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKV 127
TAGQE+F L Y A++++D+T R ++ N W D+ N IVL GNK
Sbjct: 56 TAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKT 115
Query: 128 DV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ RQV ++ ++ N + E SAK+ +N ++ F +A+ L
Sbjct: 116 DLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-30
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 31/175 (17%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCG 60
+KLV++G GG GK+ + + G F +Y+PTI G LD
Sbjct: 1 REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCL-LDIL---- 55
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 118
DTAGQE+F +RD Y G+ ++++ +T R +++ + + + RV +++
Sbjct: 56 -------DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDV 108
Query: 119 PIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
PIVL GNK D++N R V + K++ R+ + E SAK N ++ F L R
Sbjct: 109 PIVLVGNKCDLENERVVSTEEGKELA--RQWGCPFLETSAKERINVDEAFYDLVR 161
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-30
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 12/166 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK++++GD GKT V+R +G F ++ TIGV+ +++ WDTAGQE
Sbjct: 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132
+F + YY AII +D+T R ++++VP W ++ + N+ ++L GNK D++ +
Sbjct: 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123
Query: 133 QVKAKQVTFHRKKNLQYY-------EISAKSNYNFEKPFLYLARKL 171
++V F L + E SAK + N E+ FL +A +L
Sbjct: 124 ----REVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-30
Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 13/167 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCG--KIRFYCWD 68
FK+V++G+G GKT+ V R++ +F +K+E T FF N G +I WD
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQAS-----FFQKTVNIGGKRIDLAIWD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
TAGQE++ L YY AI+++D+T +++ V W ++L ++ NI +V+ GNK+
Sbjct: 56 TAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKI 115
Query: 128 D-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
D + R V + + + +++E SAK+ E+ FL LA+++
Sbjct: 116 DLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-30
Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 16/171 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----VHPLDFFTNCGKIRFYCWDT 69
FK++++GD G GKT+ +KR++ G F + Y+ TIGV+ V D T R WD
Sbjct: 1 FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVV---RLQLWDI 57
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVC----ENIPIVLCG 124
AGQE+FGG+ YY AII+FDVT T++ V W DL +V E IP +L
Sbjct: 58 AGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLA 117
Query: 125 NKVDVKNRQVKAKQVTFHR--KKN--LQYYEISAKSNYNFEKPFLYLARKL 171
NK D+K ++ + K+N + ++E SAK N N E+ +L + +
Sbjct: 118 NKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNI 168
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 9e-30
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 18/170 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
K++I+GD G GKT+ + +++ +F +Y+ TIG DF T + + WD
Sbjct: 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVTVDDRLVTLQIWD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLC 123
TAGQE+F L +Y C ++++DVT +++++ +W + EN P V+
Sbjct: 56 TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVL 115
Query: 124 GNKVDV-KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
GNK+D+ + RQV K+ K N+ Y+E SAK N ++ F +AR
Sbjct: 116 GNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARL 165
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-28
Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYC 66
P++KLV+VG GG GK+ + + F Y+PTI D +T +I R
Sbjct: 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE------DSYTKQCEIDGQWARLDI 54
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
DTAGQE+F +R+ Y G+ +++F VT R +++ V +H + RV + P++L G
Sbjct: 55 LDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVG 114
Query: 125 NKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
NK D+++++ +++ R+ + Y E SAK N +K F L R
Sbjct: 115 NKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-28
Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 11/163 (6%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKL+++GD G GK+ + R F + TIG++ + KI+ WDTAGQE
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
+F + YY I+++D+T +++N+ W R++ E++ +L GNK D++ +
Sbjct: 64 RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123
Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLAR 169
+ V+ + L ++ E SAK+N N E+ FL LA+
Sbjct: 124 ----RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAK 162
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-27
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK +I+GD G GK+ + + F+ ++ TIGVE + +I+ WDTAGQE
Sbjct: 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
F + YY A++++D+T R T+ ++ +W D R N+ I+L GNK D+++
Sbjct: 65 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSNSNMTIMLIGNKCDLES 123
Query: 132 RQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R+ + + F R+ L + E SAK+ N E+ F+ A+++
Sbjct: 124 RREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 6e-27
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 5/162 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK +I+G GTGK+ + + + +F++ TIGVE ++ WDTAGQE
Sbjct: 1 FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVK- 130
+F + YY A++++D+T+R ++ + W D R +I I+L GNK D++
Sbjct: 61 RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTD-ARTLASPDIVIILVGNKKDLED 119
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+R+V + F ++ L + E SA + N E+ FL AR +
Sbjct: 120 DREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 8e-27
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 27/173 (15%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR---------- 63
FKL+++GD G GK+ + R + + Y TIGV DF KIR
Sbjct: 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DF-----KIRTIELDGKTVK 52
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVL 122
WDTAGQE+F + YY II++DVT + ++ NV W +++ R EN+ +L
Sbjct: 53 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 112
Query: 123 CGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D+ +++V +AK+ F + + + E SAK+ N E+ F+ +AR++
Sbjct: 113 VGNKCDLTDKKVVDYTEAKE--FADELGIPFLETSAKNATNVEEAFMTMAREI 163
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 4e-26
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRF 64
KL+ +GD G GKTTF+ R+ +F K+ T+G++ P ++
Sbjct: 6 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVL 122
WDTAGQE+F L ++ ++MFD+T+ ++ NV W L CEN IVL
Sbjct: 66 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125
Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162
GNK D+ + R+V +Q K + Y+E SA + N EK
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 5e-26
Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK +I+GD G GK+ + + +F TIGVE N KI+ WDTAGQE
Sbjct: 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
+F + YY A++++D+T R TY ++ +W D + N I L GNK D++
Sbjct: 63 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122
Query: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R V ++ F + L + E SAK+ N E FL A+K+
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 9e-26
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K++++GD GK+ V+R L +E + T + ++ + I WDTAGQE+
Sbjct: 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134
F + YY I++FDVT ++TYKN+ W+ +L IP ++ NK+D+ V
Sbjct: 62 FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-V 120
Query: 135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
K+ F K NL Y +SA N K F
Sbjct: 121 TQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 9e-26
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 7/164 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++++GDGG GK++ + R++T +F+ + TIGVE D + + WDTAGQE
Sbjct: 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVD 128
+F LR +Y C ++ F V +++N+ W ++ + E+ P V+ GNK+D
Sbjct: 66 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 125
Query: 129 VKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
+ RQV + Q + Y+E SAK N F R+
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 9e-26
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 14/164 (8%)
Query: 17 VIVGDGGTGKTTFVKRHLTGEF---EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
V+VG GG GK++ + L GE T +V+ + K+ DT G +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL--VDTPGLD 58
Query: 74 KFGGLRDGYYIHG-----QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
+FGGL +++ D T R + ++ E IPI+L GNK+D
Sbjct: 59 EFGGLGREELARLLLRGADLILLVVDSTDRESEEDA-KLLILRRLRKEGIPIILVGNKID 117
Query: 129 -VKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLAR 169
++ R+V+ K + +E+SAK+ ++ F L
Sbjct: 118 LLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 1e-25
Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK+V++G+ G GKT V+R G F TIGV+ KI+ WDTAGQE
Sbjct: 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNR 132
+F + YY I+ +D+T +++ +P W R++ + N + +L GNK+D+ R
Sbjct: 68 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++Q F +++ Y E SAK + N EK FL LA +L
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 5e-25
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 24/171 (14%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
+KLV+VG GG GK+ + + F +Y+PTI E LD
Sbjct: 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL------- 54
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
DTAGQE++ +RD Y G+ + +F + +R +++++ T+ + RV +++P+V
Sbjct: 55 ----DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110
Query: 122 LCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
L GNK D+ R V +Q + + Y E SAK+ E+ F L R++
Sbjct: 111 LVGNKCDLAARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 6e-25
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MA DY FK+V++GD G GK+ + R EF + + TIGVE
Sbjct: 1 MAHRVDHEYDY-LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK 59
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIP 119
++ WDTAGQE++ + YY A++++D+T R T+ NV W R+L + NI
Sbjct: 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV 119
Query: 120 IVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
I++ GNK D+ + R V + K+ L + E SA N EK F
Sbjct: 120 IMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166
|
Length = 216 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 1e-24
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKL+I+GD G GK++ + R F Y TIGV+ N +++ WDTAGQE
Sbjct: 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
+F + YY I+++DVT ++ NV W +++ + C+++ VL GNK D R+
Sbjct: 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK 126
Query: 134 V--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
V F + + +E SAK N N E+ F +
Sbjct: 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITEL 165
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 2e-24
Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 17/168 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEVHPLDFFTNCGKIRFYCW 67
+KLV++G GG GK+ + + G F +KY+PTI VEV + +
Sbjct: 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-------DGQQCMLEIL 54
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
DTAG E+F +RD Y +GQ ++++ +TA+ T+ ++ + RV E++P++L GN
Sbjct: 55 DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114
Query: 126 KVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K D+++ +V K+ R+ + E SAK+ N + F L R++
Sbjct: 115 KCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 2e-24
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGDG GKT + + T +F +Y PT+ + + + + ++ WDTAGQE+
Sbjct: 2 KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD----- 128
+ LR Y ++ F V + +++NV T W+ ++ C N+PI+L G K+D
Sbjct: 61 YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120
Query: 129 --VKNRQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLAR 169
+K + K K +T ++Y E SA + ++ F R
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 5e-24
Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 15/169 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC------GKIRFYCW 67
F+L+++GD GK++ +KR G F + +PT+GV DFF+ +I+ W
Sbjct: 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGV-----DFFSRLIEIEPGVRIKLQLW 57
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGN 125
DTAGQE+F + YY + +++FD+T R ++++V W + +L G+
Sbjct: 58 DTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGH 117
Query: 126 KVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
K D+++ RQV + + + ++Y E SA++ N E+ F L +++
Sbjct: 118 KCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 8e-24
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF-YCWDTA 70
K+V+VGDGG GKT + + G F ++Y PT+ E + GKI WDTA
Sbjct: 2 LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDTA 60
Query: 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDV 129
GQE + LR Y +I + V + NV W+ ++ C PIVL G K D+
Sbjct: 61 GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDL 120
Query: 130 ---KNRQVKAKQ-----VTFHRKKNL-------QYYEISAKSNYNFEKPF 164
KN K + VT + +++ Y E SAK N ++ F
Sbjct: 121 RKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 1e-23
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 1 MALPSQQTVDYP-SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC 59
M S Q+ Y SFK++++GD G GK++ + ++ E PTIGV+
Sbjct: 1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGG 59
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENI 118
+++ WDTAGQE+F L YY + Q I+++DVT R T+ N+ W +++ N
Sbjct: 60 KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ 119
Query: 119 PIV--LCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
V L GNKVD ++ + +++ + ++ + E SAK+ N E+ F LA K+
Sbjct: 120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176
|
Length = 211 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 1e-23
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK++++GD GKT R G F ++ E TIGV+ + +I+ WDTAGQE
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62
Query: 74 KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
+F + YY + + ++DVT ++ ++P+W + C + +P +L GNK D+
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEE-CEQHSLPNEVPRILVGNKCDL 121
Query: 130 K-NRQVKAKQVT-FHRKKNLQYYEISAK---SNYNFEKPFLYLARKL 171
+ QV F ++ +E SAK N + E F+ LA KL
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 1e-23
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 25/172 (14%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEV----HPLDFFTNCGKIR 63
+K+V++G GG GK+ + ++G F +KY+PTI +EV L+
Sbjct: 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEIL------- 54
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
DTAG E+F +RD Y +GQ I+++ + + T++++ + RV E +PI+
Sbjct: 55 ----DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110
Query: 122 LCGNKVDVK-NRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
L GNKVD++ R+V A+ + + E SAKS + F + R++
Sbjct: 111 LVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 1e-22
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
F+L+++GD G GKT + R EF + TIGV+ + K+R WDTAGQE
Sbjct: 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KN 131
++ + YY Q +++D+++ +Y+++ W D+ E + +L GNK D +
Sbjct: 61 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120
Query: 132 RQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLA 168
RQV +Q K+ ++E SA +N N ++ F L
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 3e-22
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTA 70
K+++VG GG GK+ + + EF + YEPT + LD +++ DTA
Sbjct: 1 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD----GEEVQLNILDTA 56
Query: 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128
GQE + +RD Y+ G+ +++F +T ++ + + + RV +N+P++L GNK D
Sbjct: 57 GQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCD 116
Query: 129 -VKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
RQV + + + Y E SAK+ N +K F L R++
Sbjct: 117 LEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 5e-22
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK +I+GD G GK+ + + F+ ++ TIGVE + I+ WDTAGQE
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
F + YY A++++D+T R T+ ++ +W D + N+ I+L GNK D+ +R
Sbjct: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + F ++ L + E SAK+ N E+ F+ A K+
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167
|
Length = 210 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 5e-22
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V++GDG GKT+ + G F + YEPT+ E + D F + + WDTAGQE+
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK--- 130
F LR Y ++ F V + +NV + W ++ C + +VL K D++
Sbjct: 61 FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPR 120
Query: 131 NRQVKAKQVTFH--------RKKNLQYYEISAKSNYNFEKPFLYLAR 169
N + + + R +Y E SAK N + F AR
Sbjct: 121 NERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 9e-22
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
FK+++VGD G GKT + R G F + T+G++ + K++ WDTAGQ
Sbjct: 1 FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK- 130
E+F + YY ++++DVT + ++ N+ W ++ ++ I+L GNK D+
Sbjct: 61 ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120
Query: 131 NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R VK + ++ + + E SAK+ N E F +A++L
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 1e-21
Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 16/168 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-----TNCGKIRFYCWD 68
+KLV++G GG GK+ + + G F KY+PTI D + +C + D
Sbjct: 2 YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE------DSYRKQIEVDCQQCMLEILD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAG E+F +RD Y +GQ +++ +TA+ ++ ++ + RV E++P++L GNK
Sbjct: 56 TAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNK 115
Query: 127 VDVKNRQVKAKQ--VTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171
D+++ +V +K+ R+ N + E SAKS N ++ F L R++
Sbjct: 116 CDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-21
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K+VIVGD GK+T + R L + +Y+P + +F DTAGQ
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV 129
E + +R YY + ++ +FD+ + + + +++ E +PI+L GNK+D+
Sbjct: 62 EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121
Query: 130 KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPF 164
++ ++K F + +SA++ N + F
Sbjct: 122 RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 85.0 bits (210), Expect = 3e-21
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 11/158 (6%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKL+I+G+ GKT+F+ R+ F + T+G++ + N +I+ WDTAGQE
Sbjct: 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
++ + YY I+M+D+T ++ V W + +N ++L GNK D+++
Sbjct: 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121
Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPF 164
+V V+ R + L +++E SAK N N ++ F
Sbjct: 122 RV----VSAERGRQLADQLGFEFFEASAKENINVKQVF 155
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-21
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
LV+VGDG GKT + + T F + Y PT+ E + D + + WDTAGQE +
Sbjct: 1 LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59
Query: 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV----- 129
LR Y +I F V + +++NV W+ ++ C N+PI+L G K+D+
Sbjct: 60 DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKS 119
Query: 130 ---KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
+ + K + VT+ + + L +Y E SA +
Sbjct: 120 TLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEG 159
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 1e-20
Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
+++I+G G GKT+ ++R F + + T+GV+ KIR WDTAGQE+
Sbjct: 2 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NR 132
F + YY + I+++D+T + T+ ++P W + + + E+ ++L GNK+D + +R
Sbjct: 62 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYL 167
++ +Q + +++ E SAK N+N ++ FL L
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 2e-20
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 25/172 (14%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
+KLV+VG GG GK+ + + F +Y+PTI E LD
Sbjct: 6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDIL------- 58
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIV 121
DTAGQE++ +RD Y GQ + ++ +T+R +++ + ++ + RV + +P++
Sbjct: 59 ----DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI 114
Query: 122 LCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
L GNK D+ + RQV + + + + E SAK N ++ F L R++
Sbjct: 115 LVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166
|
Length = 189 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-20
Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQ 72
K++ +G+ G GK+ +KR+ G F KY PTIG++ V + N ++R +D +G
Sbjct: 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVS-VRNK-EVRVNFFDLSGH 59
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL------CRVCENIPIVLCGNK 126
++ +R+ +Y Q ++++DVT R +++ + +W +++ ENI +V+C NK
Sbjct: 60 PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119
Query: 127 VD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+D K+R V + + K +Y+E SA + + F L +
Sbjct: 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 8e-20
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 23/175 (13%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF--------Y 65
K+V++GDG +GKT+ ++R F K Y+ TIG+ DFF+ +I
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGL-----DFFSR--RITLPGSLNVTLQ 53
Query: 66 CWDTAGQEKFGGLRDGYYIHG-QCAIIMFDVTARLTYKNVPTWHRDLCRVCEN----IPI 120
WD GQ+ G + D YI+G Q +++D+T +++N+ W + +V E +
Sbjct: 54 VWDIGGQQIGGKMLDK-YIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112
Query: 121 VLCGNKVDV-KNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VL GNK D+ NRQV A K F ++ +++ +SAK+ F +A +L G
Sbjct: 113 VLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLG 167
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-19
Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 18/169 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEVHPLDFFTNCGKIRFYCW 67
+K+V++G GG GK+ + + F + Y+PTI VE+
Sbjct: 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEI-------L 54
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
DTAG E+F +R+ Y GQ ++++ VT+ + + + R+ +N+P+VL GN
Sbjct: 55 DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGN 114
Query: 126 KVDVKN-RQV-KAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171
K D+++ RQV + V+ ++ N+ +YE SA+ N ++ F+ L R++
Sbjct: 115 KADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 3e-19
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLV++GDGG GKT + F + Y+PTI + + + DTAGQE+
Sbjct: 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEE 59
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN----IPIVLCGNKVDVK 130
+ LRD + G+ I+++ +T+R T++ V + + RV + +PI++ GNK D
Sbjct: 60 YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119
Query: 131 NRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + R+ ++ E SAK+N N E+ F L R L
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190 |
| >gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4) | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 1e-18
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 15 KLVIVGDGGTGKTTFVKR-HLTG-EFEKKYEPTIGVEVH----PLDFFTNCGKIRFYCWD 68
+ +VGD GK+ V+ H G F+K Y T G ++ P+ ++ + + +D
Sbjct: 2 QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSD--SVELFIFD 59
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-----IPIVLC 123
+AGQE F + + + +++DVT +++ N W + RV + P VL
Sbjct: 60 SAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRW---INRVRTHSHGLHTPGVLV 116
Query: 124 GNKVD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
GNK D R+V A Q + L++YE SAK +E PFL LAR
Sbjct: 117 GNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164
|
RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (191), Expect = 2e-18
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 38 FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97
F+ Y+ TIG++ + + G +R WDTAGQE+F L Y AI+++D+T
Sbjct: 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64
Query: 98 RLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISA 154
R +++N W +D L +++ I L GNK D+ + R+V ++ + ++ N ++E SA
Sbjct: 65 RQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSA 124
Query: 155 KSNYNFEKPFLYLARKL 171
K+ +N + F +A KL
Sbjct: 125 KAGHNIKVLFKKIAAKL 141
|
Length = 176 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 2e-18
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 15/169 (8%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLVIVGDG GKT+ + GEF ++Y PT+ E + D + ++ WDTAGQE+
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV---- 129
+ LR Y +I F + + +NV T W ++ R C N+P++L G K D+
Sbjct: 62 YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEA 121
Query: 130 --KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
K + V + K + +Y E SA + + F R
Sbjct: 122 VAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATR 170
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 2e-18
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
S K V+VGDG GKT + + T F K+Y PT+ + + + + WDTAGQ
Sbjct: 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQ 61
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
E++ LR Y II F + + +Y+NV WH ++C C N+PI+L G K D++N
Sbjct: 62 EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 7e-18
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 10/162 (6%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+++VGD GKT + R F+K Y+ TIGV+ F WDTAGQE+
Sbjct: 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP----IVLCGNKVDVK 130
F + YY Q II+FD+T + ++ W D + EN P + L G K D+
Sbjct: 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALK--ENDPSSVLLFLVGTKKDLS 119
Query: 131 N----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168
+ ++ + R+ +Y+ +SA + N F +A
Sbjct: 120 SPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVA 161
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 9e-18
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 38/180 (21%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW-----D 68
+++V++G GKT V R L G FE++Y PTI DF IR + D
Sbjct: 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE------DFHRKLYSIRGEVYQLDILD 54
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI---------- 118
T+G F +R + G I++F + R +++ V CR+ E I
Sbjct: 55 TSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEV-------CRLREQILETKSCLKNK 107
Query: 119 -------PIVLCGNKVDVK-NRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLA 168
P+V+CGNK D R+V+ +V +N Y+E+SAK N N ++ F L
Sbjct: 108 TKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-17
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 25/173 (14%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
+K+V++G GG GK+ + ++ F ++PTI E LD
Sbjct: 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDIL------- 55
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
DTAGQ +F +RD Y G+ II + VT R +++ + + RV E+IP+V
Sbjct: 56 ----DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLV 111
Query: 122 LCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
L GNKVD++ RQV ++ R+ N ++E SA + + F L R++
Sbjct: 112 LVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIR 164
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 5e-17
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K ++VGD GK + G E Y +G++ + +++ WDT+GQ
Sbjct: 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NR 132
+F + Y Q I+++D+T R ++ + W +++ +P +L GN++ + R
Sbjct: 67 RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR 126
Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
QV +Q + + + ++E+S N+N + F LAR
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 5e-17
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 17/159 (10%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLVIVGDG GKT + +F + Y PT+ E + D + ++ WDTAGQE
Sbjct: 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-- 131
+ LR Y ++ F + + + +N+P W ++ C N+PI+L GNK D++N
Sbjct: 62 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121
Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSN 157
++K + V + + Y E SAK+
Sbjct: 122 HTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTK 160
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-16
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
+LV +G G GKT ++R L FE K+ T+ E+H ++ K+ DT+G
Sbjct: 1 RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVD-VKN 131
F +R +G +++ V +++ V ++ V E+ +PIV+ GNK+D +
Sbjct: 60 FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119
Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
RQV+A T N + E SAK N N + F L ++
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 9e-16
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K+V++G GKT+ V+R++ F Y+ TIG + WDTAG E
Sbjct: 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
++ + YY + AI+ +D+T +++ W ++L + E+ I LCG K D+ +
Sbjct: 62 RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQD 121
Query: 134 VKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLA 168
+QV FH ++ Q++E S+K+ N ++ F +A
Sbjct: 122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-15
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V++GD G+GK++ + + + GEF + G + + WD G+E+
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 75 FGGLRDGYYIHGQC--AIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNK 126
+ ++++D+T R + V W +L ++ IP++L GNK
Sbjct: 61 L--KFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-15
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 11/159 (6%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAG 71
+++V+ G GG GK++ V R + G F + Y PTI + +C K DT G
Sbjct: 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV---ISCSKSICTLQITDTTG 58
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNKV 127
+F ++ G I+++ +T++ + + + + +C E IPI+L GNK
Sbjct: 59 SHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKC 118
Query: 128 D-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164
D +R+V + + R N + E SAK+N+N ++ F
Sbjct: 119 DESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3 | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-14
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K V+VGDG GKT + + T F +Y PT+ + + + + + WDTAGQ
Sbjct: 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 59
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E + LR Y +I F + + +++NV W+ ++ C N PI+L G K+D+++
Sbjct: 60 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119
Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSN 157
+ +++ + + Y + A +
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAK 145
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-14
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGD GKT ++ F + Y PT+ E + F + +I WDT+G
Sbjct: 3 KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
+ +R Y +I FD++ T +V W ++ C N P++L G K D++
Sbjct: 62 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRT 119
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-14
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 21/162 (12%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG------VEVHPLDFFTNCGKIRFYCWD 68
K+ ++G GK++ + + G F + Y PTI + ++ D
Sbjct: 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEI-------VD 55
Query: 69 TAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCG 124
TAGQ+++ L Y IHG I+++ VT+R +++ V + + + E++PIVL G
Sbjct: 56 TAGQDEYSILPQKYSIGIHG--YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVG 113
Query: 125 NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164
NK D+ RQV A++ + E SAK N N E+ F
Sbjct: 114 NKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 5e-14
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69
K V+VGDG GKT+ + + T + +Y PT D F+ + +R DT
Sbjct: 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT------AFDNFSVVVLVDGKPVRLQLCDT 55
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
AGQ++F LR Y ++ F V +++N+ W ++ + PI+L G + D
Sbjct: 56 AGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD 115
Query: 129 --------VKNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
++ + K V+ R K L +Y E SA + N ++ F
Sbjct: 116 LRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-12
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 22/130 (16%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT----------IGVEVHPLDFFTNCGKI 62
+ K V+VGDG GKT + + T +F +Y PT IG E + L F
Sbjct: 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF------ 54
Query: 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIV 121
DTAGQE + LR Y ++ F V + +++NV W ++ C P +
Sbjct: 55 -----DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL 109
Query: 122 LCGNKVDVKN 131
L G ++D+++
Sbjct: 110 LVGTQIDLRD 119
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-12
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69
K V VGDG GKT + + + F Y PT+ D F+ + + WDT
Sbjct: 3 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV------FDNFSANVVVDGNTVNLGLWDT 56
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 128
AGQE + LR Y ++ F + ++ +Y+NV W +L +PIVL G K+D
Sbjct: 57 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLD 116
Query: 129 VKN 131
+++
Sbjct: 117 LRD 119
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-12
Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 18/163 (11%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
+++++G G GKTT + + GE PTIG V +++ ++F WD GQ+K
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTI-PTIGFNVETVEY----KNVKFTVWDVGGQDK 55
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
L YY + I + D + R + + +L ++ P+++ NK D+
Sbjct: 56 IRPLWKHYYENTDGLIFVVDSSDR---ERIEEAKNELHKLLNEEELKGAPLLILANKQDL 112
Query: 130 KNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
+++ + + + SA + ++ +L
Sbjct: 113 PGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWL 155
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-11
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 2/152 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGD GKT + F + Y PT+ E + F + +I WDT+G
Sbjct: 7 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
+ +R Y +I FD++ T +V W ++ C N ++L G K D++
Sbjct: 66 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 125
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165
+++ HR+ + Y + + + ++
Sbjct: 126 STLVELSNHRQTPVSYDQGANMAKQIGAATYI 157
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-11
Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 3/151 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE 73
KL++VG GG GKT+ K+ + +F+ T G+ V KIR WD GQE
Sbjct: 3 KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N 131
+ + +++FD+ VP W R + P++L G +D
Sbjct: 63 IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVILVGTHIDESCDE 122
Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
+K + +S K+ +
Sbjct: 123 DILKKALNKKFPAIINDIHFVSCKNGKGIAE 153
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-11
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+ ++GD GKT+ + +++ GEF+++Y T+GV +I F WD GQ +
Sbjct: 2 KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61
Query: 75 FGGLRDGYYI--HGQCAII-MFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVD 128
F + + AI+ MFD+T + T ++ W+R R IPI L G K D
Sbjct: 62 F---INMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQ-ARGFNKTAIPI-LVGTKYD 115
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10) | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-10
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCGKIRFY--CWD 68
K V+VGDG GKT + + F ++Y PT+ D + G ++ +D
Sbjct: 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV------FDHYAVSVTVGGKQYLLGLYD 54
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKV 127
TAGQE + LR Y +I F V +++NV W +L N+P +L G ++
Sbjct: 55 TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQI 114
Query: 128 DVKN 131
D+++
Sbjct: 115 DLRD 118
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-10
Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 45/193 (23%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V++GD GKT+ + R++ F K T+G + G WDTAG+E+
Sbjct: 2 KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAF----YLKQWGPYNISIWDTAGREQ 56
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKN 131
F GL Y I+ +DV+ + + + R L E+ + GNK+D+
Sbjct: 57 FHGLGSMYCRGAAAVILTYDVSNVQSLEEL--EDRFLGLTDTANEDCLFAVVGNKLDLTE 114
Query: 132 RQVKA---------------KQVTFH----------RKKNLQ----------YYEISAKS 156
A +QVT + K L +E SAK+
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174
Query: 157 NYNFEKPFLYLAR 169
YN ++ F YL
Sbjct: 175 GYNVDELFEYLFN 187
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-10
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
+ +VG +GKTT V +G+F + PT+G + + G + WD GQ +F
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKV----TKGNVTIKVWDLGGQPRF 57
Query: 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVK 130
+ + Y + + D R + +L + E IP+++ GNK D+
Sbjct: 58 RSMWERYCRGVNAIVYVVDAADRE---KLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114
Query: 131 NRQVKAKQVTFHRKKNLQ-----YYEISAKSNYN 159
+ + K++ Y ISAK N
Sbjct: 115 GALSVDELIEQMNLKSITDREVSCYSISAKEKTN 148
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-10
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 38/167 (22%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG--------VEVHPLDFFTNCGKIRFYC 66
K+ ++G G GK+ R LT F +YEP + ++ + +I
Sbjct: 1 KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSL-----EI---- 51
Query: 67 WDTAGQEKFGG-------LR--DGYYIHGQCAIIMFDVTARLTYKNVPTWH---RDLCRV 114
DT GQ++ LR DG+ ++++ +T R ++ V R++ +
Sbjct: 52 QDTPGQQQNEDPESLERSLRWADGF-------VLVYSITDRSSFDVVSQLLQLIREIKKR 104
Query: 115 CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYN 159
IP++L GNK D+ + RQV + + ++E+SA NY
Sbjct: 105 DGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-08
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+K++IVG GKTT + + L GE PTIG V + + IRF WD GQE
Sbjct: 16 YKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIGSNVEEIVY----KNIRFLMWDIGGQE 70
Query: 74 KFGGLRDG---YYIHGQCAIIMFDVT--ARLT------YKNVPTWHRDLCRVCENIPIVL 122
LR YY + I++ D T RL YK + H DL +++
Sbjct: 71 S---LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLA--HEDL----RKAVLLV 121
Query: 123 CGNKVDVK 130
NK D+K
Sbjct: 122 LANKQDLK 129
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 3e-08
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGD GKT + + + Y PT+ E + F + +I WDT+G
Sbjct: 3 KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130
+ +R Y +I FD++ T +V W + C N +VL G K+D++
Sbjct: 62 YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMR 118
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-07
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 17 VIVGDGGTGKTTFVKRHLTGEFEKKYE--------PTIGVEVHPLDFFTNCGKIRFYCWD 68
+I+G GKTTF+++ T +F K Y+ PT+G+ + ++ GK R WD
Sbjct: 3 LILGLDNAGKTTFLEQTKT-KFSKNYKGLNPSKITPTVGLNIGTIEV----GKARLMFWD 57
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVT--ARL-----TYKNVPTWHRDLCRVCENIPIV 121
GQE+ L D YY I + D T R ++ V + L E +P++
Sbjct: 58 LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVIN-NEAL----EGVPLL 112
Query: 122 LCGNKVDVKNR 132
+ NK D+ +
Sbjct: 113 VLANKQDLPDA 123
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 30/163 (18%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRF 64
+++V++GD G GK++ G +E YE T+ V+ +
Sbjct: 1 YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEAT-------LVV 53
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
Y D QE L D G +I++ VT R +++ L R E+IPI+L
Sbjct: 54 Y--DHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIIL 111
Query: 123 CGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYN 159
GNK D V++R+V +A V F + ++ E SA +N
Sbjct: 112 VGNKSDLVRSREVSVQEGRACAVVF----DCKFIETSAALQHN 150
|
RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-06
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+++I+G GKTT + + GE PTIG V + + ++F WD GQ
Sbjct: 14 EMRILILGLDNAGKTTILYKLKLGEI-VTTIPTIGFNVETVTY----KNVKFTVWDVGGQ 68
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKV 127
E L Y+ + I + D R + +L + + P+++ NK
Sbjct: 69 ESLRPLWRNYFPNTDAVIFVVDSADR---DRIEEAKEELHALLNEEELADAPLLILANKQ 125
Query: 128 DVKN 131
D+
Sbjct: 126 DLPG 129
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 5e-06
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD----- 68
++ ++G G GKT V++ L EF ++Y PT ++ + + D
Sbjct: 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60
Query: 69 ----TAGQE----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCEN- 117
TAGQE +F GLR+ + I+++D+ + ++ V + + R N
Sbjct: 61 RYPGTAGQEWMDPRFRGLRN-----SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115
Query: 118 -IPIVLCGNKVDVKNRQVKAKQVTFH---RKKNLQYYEISAKSNYN 159
PIV+ GNK D + + + V + Y E SAK N++
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWH 161
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 6e-06
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLV+VGD GKT ++ + + Y PT+ E + T ++ WDT+G
Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
+ +R Y ++ FD++ + + + W ++ C + I+L G K D++
Sbjct: 74 YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDL 133
Query: 134 VKAKQVTFHRKKNLQYYEISA 154
+++ ++ + Y + A
Sbjct: 134 STLMELSNQKQAPISYEQGCA 154
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 9e-06
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++V +G G GKTT + + EF + PTIG V +++ ++F WD G+ K
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQPI-PTIGFNVETVEY----KNLKFTIWDVGGKHK 55
Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
L YY++ Q + + D + R
Sbjct: 56 LRPLWKHYYLNTQAVVFVIDSSHR 79
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 30/173 (17%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----TIGVEVHPLDFFTNCGKIRFYCWDT 69
++V++GD G GK++ + ++ EF + TI +V P T I DT
Sbjct: 4 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPT---TIV----DT 56
Query: 70 AGQEKFGGLRDGYY--IHGQCAI-IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 125
+ + + R I I +++ V T + + T W + R+ +PI+L GN
Sbjct: 57 SSRPQ---DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGN 113
Query: 126 KVDV--KNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
K D+ + Q ++ F ++ E SAK+ N + F Y A+K
Sbjct: 114 KSDLRDGSSQAGLEEEMLPIMNEF--REIETCVECSAKTLINVSEVF-YYAQK 163
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
++++G +GKTT + L + PT+G ++ F G + F +D +GQ
Sbjct: 2 ILVLGLDNSGKTTIIN-QLKPSNAQSQNIVPTVG---FNVESFKK-GNLSFTAFDMSGQG 56
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVLCGNKV 127
K+ GL + YY + Q I + D + RL H D+ IPI+ NK+
Sbjct: 57 KYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKH--RRIPILFYANKM 114
Query: 128 DVKNRQVKAK 137
D+ + K
Sbjct: 115 DLPDALTAVK 124
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 9e-05
Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 46/155 (29%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--------------------PLD 54
++++VGD G GK++ V + G + TIG V D
Sbjct: 23 RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82
Query: 55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
FF WD +G E++ R +Y I + D++ R T ++ W + V
Sbjct: 83 FFVE-------LWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASE---V 132
Query: 115 CEN----------------IPIVLCGNKVDVKNRQ 133
+P ++ GNK D+ ++
Sbjct: 133 AATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKE 167
|
Length = 334 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 3e-04
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE PTIG V + + I F WD GQ+K
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVETVTY----KNISFTVWDVGGQDK 69
Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
L YY + Q I + D R
Sbjct: 70 IRPLWRHYYTNTQGLIFVVDSNDR 93
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 4e-04
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE PTIG V +++ I F WD GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 73
Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
L Y+ + Q I + D R
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
|
Length = 181 |
| >gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 6e-04
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTAG 71
KL IVG+ +GK+ V R+LTG + + P G EV +D ++ IR D G
Sbjct: 2 KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVL-VDGQSHLLLIR----DEGG 56
Query: 72 QE--KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCG--N 125
+F G D I +F + +++ V + L R IP++L G +
Sbjct: 57 APDAQFAGWVDA-------VIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQD 109
Query: 126 KVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ N +V +A+Q+ K YYE A N E+ F A+K+
Sbjct: 110 AISASNPRVIDDARARQLC-ADMKRCSYYETCATYGLNVERVFQEAAQKI 158
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.002
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE PTIG V +++ ++F WD GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTTI-PTIGFNVETVEY----KNLKFTMWDVGGQDK 73
Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
L YY + I + D R
Sbjct: 74 LRPLWRHYYQNTNGLIFVVDSNDR 97
|
Length = 182 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.003
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE PTIG V +++ I F WD GQ+K
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 56
Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
L Y+ + Q I + D R
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDR 80
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 173 | |||
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 100.0 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 100.0 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 100.0 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 100.0 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 100.0 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 100.0 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 100.0 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 100.0 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 100.0 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 100.0 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 100.0 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 100.0 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 100.0 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 100.0 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 100.0 | |
| PLN03108 | 210 | Rab family protein; Provisional | 100.0 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 100.0 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 100.0 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 100.0 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 100.0 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 100.0 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 100.0 | |
| PLN03118 | 211 | Rab family protein; Provisional | 100.0 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 100.0 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 100.0 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 100.0 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 100.0 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 100.0 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 100.0 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 100.0 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 100.0 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.98 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.98 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.97 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.97 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.97 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.97 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.97 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.97 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.97 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.97 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.97 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.97 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.97 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.97 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.97 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.97 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.97 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.97 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.96 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.96 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.96 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.96 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.96 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.96 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.96 | |
| PTZ00099 | 176 | rab6; Provisional | 99.95 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.95 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.95 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.95 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.95 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.95 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.94 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.94 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.94 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.94 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.94 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.94 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.93 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.93 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.93 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.93 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.93 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.93 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.93 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.93 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.93 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.92 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.92 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.92 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.92 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.92 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.92 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.92 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.92 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.92 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.92 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.92 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.91 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.91 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.91 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.91 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.91 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.9 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.9 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.9 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.9 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.9 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.9 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.9 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.9 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.9 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.9 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.9 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.9 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.9 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.9 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.89 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.89 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.89 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.89 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.89 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.89 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.89 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.89 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.88 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.88 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.88 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.88 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.88 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.87 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.87 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.87 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.87 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.87 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.87 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.87 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.86 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.86 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.85 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.85 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.85 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.85 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.84 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.84 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.83 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.83 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.83 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.83 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.83 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.83 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.83 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.83 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.82 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.82 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.82 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.82 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.82 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.81 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.81 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.81 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.81 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.8 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.8 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.79 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.78 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.78 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.78 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.78 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.77 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.77 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.77 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.77 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.76 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.76 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.76 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.76 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.76 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.75 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.75 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.75 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.74 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.74 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.73 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.72 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.72 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.71 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.71 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.7 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.7 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.7 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.7 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.7 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.7 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.69 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.69 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.69 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.68 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.67 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.66 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.63 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.62 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.62 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.61 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.6 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.6 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.59 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.59 | |
| PRK13768 | 253 | GTPase; Provisional | 99.58 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.58 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.55 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.53 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.53 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.52 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.51 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.51 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.51 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.51 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.5 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.49 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.49 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.49 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.48 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.48 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.48 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.46 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.45 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.44 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.44 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.43 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.42 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.42 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.41 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.4 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.4 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.39 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.38 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.38 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.38 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.37 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.37 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.35 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.32 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.3 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.3 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.29 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.29 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.28 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.27 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.24 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.24 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.23 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.22 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.22 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.21 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.2 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.2 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.18 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.17 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.16 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.15 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.15 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 99.12 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.11 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.1 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.09 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.09 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.08 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.05 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 99.03 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 99.0 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.0 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.98 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.98 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.98 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.96 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.95 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.94 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.91 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.9 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.89 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.88 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.88 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.87 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.87 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.86 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.85 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.85 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.83 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.82 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.82 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.79 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.79 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.76 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.74 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.69 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.69 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 98.69 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.68 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.68 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.68 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.67 | |
| KOG4273 | 418 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.6 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.58 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.58 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.57 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.56 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.54 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.53 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.5 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.5 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.49 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.47 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.46 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.45 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.44 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.43 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.41 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.37 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.35 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.34 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.33 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.33 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 98.31 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.3 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.28 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.27 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.26 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 98.25 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.23 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 98.22 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.19 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.19 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.16 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.15 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 98.12 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 98.08 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 98.08 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.05 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.05 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.05 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.02 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.98 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.96 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.92 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 97.92 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.9 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.88 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.88 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.86 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.85 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.84 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 97.83 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.83 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.78 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.78 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.74 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.74 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.71 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.71 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.7 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.7 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.69 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.68 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.68 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.64 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.63 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.63 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.62 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.61 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.59 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.58 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.57 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.56 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.55 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.54 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.53 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.51 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.5 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 97.44 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.44 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.44 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.44 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 97.43 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.42 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.41 | |
| PF11111 | 176 | CENP-M: Centromere protein M (CENP-M); InterPro: I | 97.41 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.39 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.39 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.38 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.38 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.38 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.37 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.36 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.36 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.36 | |
| smart00072 | 184 | GuKc Guanylate kinase homologues. Active enzymes c | 97.36 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.35 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.32 | |
| PLN02200 | 234 | adenylate kinase family protein | 97.32 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.32 | |
| PF00625 | 183 | Guanylate_kin: Guanylate kinase; InterPro: IPR0081 | 97.31 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 97.31 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.3 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.29 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.29 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.28 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.27 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.26 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.26 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.26 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.26 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.25 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.24 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.24 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.21 | |
| PLN02924 | 220 | thymidylate kinase | 97.21 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.21 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 97.21 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.2 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 97.19 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.18 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 97.17 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.17 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 97.16 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.16 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 97.16 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.16 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.15 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.15 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.15 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.14 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 97.14 | |
| PLN02772 | 398 | guanylate kinase | 97.14 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 97.13 |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=225.14 Aligned_cols=161 Identities=34% Similarity=0.615 Sum_probs=150.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|.+|+|||+|+.||..+.+++.+..|+|+++...+..++++.+++++|||+||++|+++...||++++++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccccH-HHHHHHHHcCCc-EEEEccCCCCChHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~~~~-~~~~S~~~~~~i~~~~~~i 167 (173)
|||+++.+||+.+..|+.++.++. +++|.++||||+|+.+ +.+.. +...++.+++++ ++++||+++.++.+.|..|
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence 999999999999999999999986 6789999999999987 33333 455899999999 9999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
+..+.
T Consensus 168 a~~lk 172 (205)
T KOG0084|consen 168 AKELK 172 (205)
T ss_pred HHHHH
Confidence 88764
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=214.44 Aligned_cols=162 Identities=34% Similarity=0.610 Sum_probs=149.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
..++|++++|..++|||||+-|+..+.|.+...+|+|..+...++.+++..++|.+|||+|+++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||+++.+||..++.|+..+.+.. +++-+.+||||+||.+ +.+ .++...++...++.|+++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 9999999999999999999998875 5677788999999987 444 445668999999999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 163 a~~lp 167 (200)
T KOG0092|consen 163 AEKLP 167 (200)
T ss_pred HHhcc
Confidence 99875
|
|
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=225.50 Aligned_cols=172 Identities=99% Similarity=1.607 Sum_probs=155.8
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030693 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|++++....+...+||+++|.+|+|||||+++++.+.+...+.++.|.+.....+..++..+.+.+||++|++++..++.
T Consensus 1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 80 (219)
T PLN03071 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (219)
T ss_pred CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 67777777778889999999999999999999999999888899999888887777777789999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.++++++++|+|||++++++++.+..|+..+.+..++.|+++|+||+|+.++....+...++...++.|+++||++|.|+
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 99999999999999999999999999999998877899999999999997665544445777788899999999999999
Q ss_pred HHHHHHHHHHhh
Q 030693 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
.++|+++++.+.
T Consensus 161 ~~~f~~l~~~~~ 172 (219)
T PLN03071 161 EKPFLYLARKLA 172 (219)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=206.85 Aligned_cols=165 Identities=30% Similarity=0.513 Sum_probs=151.1
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.....+||+++|.+|+|||+|+-+|..+.+.+....|+|+++....+.+++..+++.+|||+|+++|+.++..||+++.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 34457999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc-c-cccHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
+|+|||++.+++|..+..|+.++..++ +++-.++|+||+|... + ...++...+++++++-|+++||++.+|++..|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 999999999999999999999999886 4666789999999873 3 33456679999999999999999999999999
Q ss_pred HHHHHHhhC
Q 030693 165 LYLARKLAG 173 (173)
Q Consensus 165 ~~i~~~i~~ 173 (173)
+.+..+|++
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999998864
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=211.07 Aligned_cols=165 Identities=32% Similarity=0.575 Sum_probs=150.0
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
....+.+|++++|..++||||||.+|..+.+...|.+|+|+++...++.+.+..+.+++|||+|||+|+.+...|+++++
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
++|+|||+++..||+...+|++.+.... .++-+++||||.||.+ ++.. ++....+++++..|.++||+.|.|+.++
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 9999999999999999999999998875 2466789999999987 3333 3445789999999999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|..|+..+.
T Consensus 177 FrrIaa~l~ 185 (221)
T KOG0094|consen 177 FRRIAAALP 185 (221)
T ss_pred HHHHHHhcc
Confidence 999887654
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=212.89 Aligned_cols=164 Identities=32% Similarity=0.605 Sum_probs=152.8
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.....+||+++|.++||||+|+.+|..+.+...+..|.|+++...++..++..+.+++|||+||++|+.+...|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+++|||+++..||+.+..|+..+.++.+ ++|.++||||+|+.. +.+ .+...++|.++++.|+|+||++|.||.+.|-
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 9999999999999999999999999874 899999999999987 444 3445689999999999999999999999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
.+++.++
T Consensus 168 ~La~~i~ 174 (207)
T KOG0078|consen 168 SLARDIL 174 (207)
T ss_pred HHHHHHH
Confidence 9999876
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=215.98 Aligned_cols=161 Identities=24% Similarity=0.524 Sum_probs=145.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|..|+|||||+.+|..+.+...+.++.+.+.....+..++..+.+.+||++|+++|..++..+++++|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 46999999999999999999999888887778888888877777778888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|||++++++++.+..|++.+....++.|+++|+||+|+.+ +.. .++...+++..++.++++||++|.|++++|+++++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999999988778999999999999975 233 33456888889999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 165 ~i~ 167 (189)
T cd04121 165 IVL 167 (189)
T ss_pred HHH
Confidence 765
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=208.62 Aligned_cols=162 Identities=33% Similarity=0.557 Sum_probs=151.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+|++++|..|+|||+|+.+|..+.|.+.+..|+|+++-...+.++++.+++++|||+|++.+++.++.||+.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc--ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++.+++|..+..|+..++++. +|..+++++||+||..+. ..++...||+++++.+.++||++++|+.|+|...
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999984 899999999999998633 3445678999999999999999999999999998
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
...+.
T Consensus 164 a~~Iy 168 (216)
T KOG0098|consen 164 AKEIY 168 (216)
T ss_pred HHHHH
Confidence 88765
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=209.86 Aligned_cols=158 Identities=28% Similarity=0.475 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+++|||+|+.++..+.+...+.+|.+... ...+..++..+.+.+|||+|+++++.++..++++++++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888899998665 345667788899999999999999999999999999999999
Q ss_pred ECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccc------------cccHHHHHHHHHcCC-cEEEEccCCCCC
Q 030693 94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR------------QVKAKQVTFHRKKNL-QYYEISAKSNYN 159 (173)
Q Consensus 94 d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 159 (173)
|+++++||+.+ ..|+..+....++.|+++|+||+|+.+. ...++..+++...++ .|+++||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 6899999877778999999999999653 223345678888887 599999999999
Q ss_pred hHHHHHHHHHHhh
Q 030693 160 FEKPFLYLARKLA 172 (173)
Q Consensus 160 i~~~~~~i~~~i~ 172 (173)
++++|+.+++.+.
T Consensus 161 V~~~F~~~~~~~~ 173 (176)
T cd04133 161 VKAVFDAAIKVVL 173 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=213.79 Aligned_cols=159 Identities=29% Similarity=0.610 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+.|+++|..|+|||||+.++..+.+...+.+|.+.++....+..++..+.+.+|||+|+++|+.++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888899998888777888888899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccccH-HHHHHHHHc-CCcEEEEccCCCCChHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|+++++|++.+..|+..+.+.. ++.|+++|+||+|+.+ +.... +..+++.+. ++.++++||++|.|+.++|+++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887664 5799999999999965 33333 344667664 789999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 161 ~~~ 163 (202)
T cd04120 161 DIL 163 (202)
T ss_pred HHH
Confidence 764
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=210.72 Aligned_cols=161 Identities=24% Similarity=0.399 Sum_probs=142.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+++|||||+.++..+.+...+.||.+... ...+.+++..+.+.+|||+|+++|..++..+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4579999999999999999999999999888899997655 356677888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccc--------------cccHHHHHHHHHcCC-cEEEEcc
Q 030693 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|||+++++||+.+ ..|+..+.+..++.|+++|+||+|+.+. ...++..+++++.++ .|+++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997 7899999888889999999999998641 223456689999995 8999999
Q ss_pred CCCCC-hHHHHHHHHHHhh
Q 030693 155 KSNYN-FEKPFLYLARKLA 172 (173)
Q Consensus 155 ~~~~~-i~~~~~~i~~~i~ 172 (173)
++|.| ++++|+.+++.++
T Consensus 162 k~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 162 LQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 99998 9999999988654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=211.46 Aligned_cols=160 Identities=31% Similarity=0.536 Sum_probs=139.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.+||+++|.+++|||||+.++..+.+...+.+|.+.... .....++..+.+.+|||+|+++|+.++..+++++|++++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 4689999999999999999999999998888999986543 445667788999999999999999999999999999999
Q ss_pred EEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHHcC-CcEEEEccC
Q 030693 92 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAK 155 (173)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S~~ 155 (173)
|||+++++|++.+. .|+..+....++.|+++|+||+|+.+.. ..++..+++.+.+ +.++++||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999997 5888887777799999999999996531 1234456787787 589999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030693 156 SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i~ 172 (173)
+|.|++++|+++++.++
T Consensus 161 ~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 161 NQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998775
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=205.50 Aligned_cols=160 Identities=88% Similarity=1.432 Sum_probs=144.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888899988887777777778899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhhC
Q 030693 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~~ 173 (173)
|++++++++.+..|+..+.....+.|+++|+||+|+.++....+..+++...++.++++||++|.|+.++|++|++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999988877899999999999986655555556777788999999999999999999999988763
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=207.27 Aligned_cols=159 Identities=23% Similarity=0.388 Sum_probs=140.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|++|+|||||++++..+.++..+.+|.+.... ..+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999998888999876653 5667788889999999999999999999999999999999
Q ss_pred EECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccc--------------cccHHHHHHHHHcCC-cEEEEccCC
Q 030693 93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (173)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~~~ 156 (173)
||+++++||+.+ ..|+..+.+.+++.|+++|+||+|+.+. ...++..+++.+.++ .|+++||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 7899999888889999999999999541 223456689999997 799999999
Q ss_pred CCC-hHHHHHHHHHHhh
Q 030693 157 NYN-FEKPFLYLARKLA 172 (173)
Q Consensus 157 ~~~-i~~~~~~i~~~i~ 172 (173)
|++ ++++|..+++..+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999988654
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=200.68 Aligned_cols=162 Identities=32% Similarity=0.648 Sum_probs=148.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||+|++++..++|...+..|+|.++...++.+++..+.+++|||+|+++|+++...|++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCcc---ccccHH-HHHHHHHc-CCcEEEEccCCCCCh
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKK-NLQYYEISAKSNYNF 160 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~---~~~~~~-~~~~~~~~-~~~~~~~S~~~~~~i 160 (173)
+|||++++.||+.+..|..++.... ...|+||+|||+|+.. +.+..+ .+.||... +++||++||+...|+
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 9999999999999999999997764 3689999999999976 555554 45788765 689999999999999
Q ss_pred HHHHHHHHHHhh
Q 030693 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
.+.|+.+.+..+
T Consensus 167 ~~AFe~ia~~aL 178 (210)
T KOG0394|consen 167 DEAFEEIARRAL 178 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=194.15 Aligned_cols=159 Identities=28% Similarity=0.565 Sum_probs=147.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+|++++|...+|||+|+.+++...+...+.+|.|+++...++....+.+++++|||.|+|+|+.++..++++++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 47999999999999999999999999999999999999999888777889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccc-c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||+++.+|+..++.|...+..++ .|.|+++|+||||+.++.. . +....++.+.|..||++||+.+.|++++|+.+..
T Consensus 101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence 99999999999999999999886 7999999999999987543 3 3456899999999999999999999999999887
Q ss_pred Hh
Q 030693 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.|
T Consensus 181 ~I 182 (193)
T KOG0093|consen 181 II 182 (193)
T ss_pred HH
Confidence 65
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=211.37 Aligned_cols=161 Identities=21% Similarity=0.356 Sum_probs=142.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||+|+.+|..+.+...+.||.+.+.. ..+.+++..+.+.+|||+|++.|..++..+++++|+++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45799999999999999999999999999899999986654 45677888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcc-------------ccc-cHHHHHHHHHcCC-cEEEEcc
Q 030693 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQV-KAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------~~~-~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|||++++++|+.+ ..|+..+.+..++.|+++|+||+|+.+ +.+ .++..+++.+.++ .|+++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 99999999999985 789999988778899999999999964 222 3356689999998 6999999
Q ss_pred CCCC-ChHHHHHHHHHHhh
Q 030693 155 KSNY-NFEKPFLYLARKLA 172 (173)
Q Consensus 155 ~~~~-~i~~~~~~i~~~i~ 172 (173)
++|. |++++|+.++..++
T Consensus 170 ktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CcCCcCHHHHHHHHHHHHH
Confidence 9998 89999999988764
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=207.76 Aligned_cols=159 Identities=35% Similarity=0.606 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+||+++|++|+|||||+++|+.+.+...+.+|.+.+.....+..+ +..+.+.+||++|++++..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888889999888776667766 7789999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCcc--ccccHHHHHHHHHcC-CcEEEEccCCCCChHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~ 164 (173)
||++++++++.+..|+..+.... .++|+++|+||+|+.+ .....+..+++...+ ..++++||++|.|+.++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886532 5789999999999973 334445567888888 689999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
+++.+.++
T Consensus 161 ~~l~~~l~ 168 (201)
T cd04107 161 RFLVKNIL 168 (201)
T ss_pred HHHHHHHH
Confidence 99998775
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=207.53 Aligned_cols=154 Identities=87% Similarity=1.416 Sum_probs=141.4
Q ss_pred EcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCCh
Q 030693 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 98 (173)
Q Consensus 19 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 98 (173)
+|.+|+|||||+++++.+.+...+.+|.|.+.....+..++..+.+.+|||+|+++++.++..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 59999999999999998888888899999999888888888889999999999999999999999999999999999999
Q ss_pred hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 99 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 99 ~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
.+++.+..|+..+.+.+++.|+++|+||+|+..+....+...++...++.|+++||++|.|+.++|+++++.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998877899999999999997665555556778888999999999999999999999998775
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=201.98 Aligned_cols=161 Identities=34% Similarity=0.555 Sum_probs=142.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999988888888888888777777788889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++++.+..|+..+.... ++.|+++|+||+|+.... . .++..+++...++.++++||++|.|+.++|+++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998886653 578999999999997643 2 34556788888999999999999999999999998
Q ss_pred HhhC
Q 030693 170 KLAG 173 (173)
Q Consensus 170 ~i~~ 173 (173)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8753
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=194.19 Aligned_cols=160 Identities=33% Similarity=0.604 Sum_probs=150.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
-++.+|+|.+|+|||+|+-+|..+.|...|..|.|.++...++.+++..+.+++||++|+++|+.+...|+++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
||+++.+||...++|+++++..++.+|-++|+||+|.+++.. .++...++...++.+|++|++.++|+...|..|.++
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 999999999999999999999999999999999999988554 445678999999999999999999999999999887
Q ss_pred hh
Q 030693 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
++
T Consensus 168 vl 169 (198)
T KOG0079|consen 168 VL 169 (198)
T ss_pred HH
Confidence 64
|
|
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=203.07 Aligned_cols=158 Identities=24% Similarity=0.405 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+++++.+.+...+.+|.|.+.....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998887777778888899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-------cccHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
|++++++++.+..|+..+.+..+ +.| ++|+||+|+... ....+..+++...+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999877643 455 678999999531 112234467788889999999999999999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
++.+.++
T Consensus 160 ~l~~~l~ 166 (182)
T cd04128 160 IVLAKAF 166 (182)
T ss_pred HHHHHHH
Confidence 9998775
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=198.19 Aligned_cols=158 Identities=30% Similarity=0.520 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||++++..+.+.+.+.++.+.+........++..+.+.+|||+|++++..++..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888877788777777667777778899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|++++.+++.+..|+..+.+..++.|+++|+||+|+.... ..+..+++...+++++++||++|.|++++|+.+.+.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998877789999999999985432 23345666677889999999999999999999998765
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=201.51 Aligned_cols=159 Identities=30% Similarity=0.501 Sum_probs=138.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|+|||||++++..+.+...+.++.+... ...+..++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 58999999999999999999999999888888887444 34566677889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+..|+..+.+. .++.|+++|+||+|+.+. ... ++..++++..+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999888887664 258999999999998653 333 345578888899999999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 161 ~~~~ 164 (172)
T cd04141 161 REIR 164 (172)
T ss_pred HHHH
Confidence 8765
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=200.03 Aligned_cols=157 Identities=25% Similarity=0.433 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+.++..+.+...+.||.+.... ..+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888899876554 34566777899999999999999999999999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcC-CcEEEEccCCC
Q 030693 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~-~~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+....++.|+++|+||+|+.+.. . .++..+++++.+ +.++++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999997 5988887776789999999999986531 1 223345666666 68999999999
Q ss_pred CChHHHHHHHHHHh
Q 030693 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
.|+.++|+.+++..
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998854
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=198.04 Aligned_cols=159 Identities=28% Similarity=0.583 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777666666677799999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++++++.+..|+..+.... ++.|+++|+||+|+.+... ..+..+++...+++++++||++|.|+.++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999987765 4789999999999976432 234456777888899999999999999999999987
Q ss_pred hh
Q 030693 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=198.97 Aligned_cols=161 Identities=32% Similarity=0.549 Sum_probs=150.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.-+||+++|.+++|||-|+.||..+.+.....+|+|+++.+.++.++++.++.++|||+||++|+..+..|++++.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-cc-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|||++.+.+|+.+..|+.+++.+. +++++++|+||+||.+ +. ..++...++...+..++++||..+.|+.++|+.+.
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence 999999999999999999999987 7999999999999987 33 44456789999999999999999999999999988
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
..|.
T Consensus 173 ~~I~ 176 (222)
T KOG0087|consen 173 TEIY 176 (222)
T ss_pred HHHH
Confidence 8764
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=202.63 Aligned_cols=161 Identities=32% Similarity=0.572 Sum_probs=143.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||+++|..+.+...+.+|.+.+.....+...+..+.+.+||+||++.+..++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46999999999999999999999888877788898888777777777778899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|||++++++++.+..|+..+....++.|+++|+||+|+.+... . .+...++...++.++++|+++|.|+.++|+++.+
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 9999999999999999999988778899999999999976432 2 3445677788899999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.++
T Consensus 165 ~~~ 167 (199)
T cd04110 165 LVL 167 (199)
T ss_pred HHH
Confidence 775
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=198.15 Aligned_cols=160 Identities=27% Similarity=0.545 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888999998887777777788899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc------CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
|++++++++.+..|+..+.+.. .+.|+++|+||+|+.+ ... ..+...++...+++++++||++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999987764 3689999999999974 322 3334467777889999999999999999999
Q ss_pred HHHHHhhC
Q 030693 166 YLARKLAG 173 (173)
Q Consensus 166 ~i~~~i~~ 173 (173)
+|.+.+++
T Consensus 161 ~l~~~l~~ 168 (168)
T cd04119 161 TLFSSIVD 168 (168)
T ss_pred HHHHHHhC
Confidence 99998874
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=197.38 Aligned_cols=160 Identities=33% Similarity=0.611 Sum_probs=141.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999998888877788888877777777777889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||+++++++..+..|+..+.... ++.|+++++||+|+.... . ..+...++...+++++++||++|.|+.++|+++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999988765 578999999999986532 2 23456778888999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=200.27 Aligned_cols=162 Identities=31% Similarity=0.551 Sum_probs=140.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec----------CcEEEEEEEeCCCcccccCcchh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDG 81 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~G~~~~~~~~~~ 81 (173)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+... +..+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999988888998877766555443 35689999999999999999999
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCC
Q 030693 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
+++++|++++|||+++++++..+..|+..+.... ++.|+++|+||+|+.+. ... .+..+++.+.+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999987653 57899999999999763 323 3456788888999999999999
Q ss_pred CChHHHHHHHHHHhhC
Q 030693 158 YNFEKPFLYLARKLAG 173 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~~ 173 (173)
.|++++|+++.+.+++
T Consensus 163 ~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 163 TNVEKAVERLLDLVMK 178 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987753
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=197.48 Aligned_cols=160 Identities=31% Similarity=0.603 Sum_probs=142.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999999888899998887777777777889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++++.+..|+..+.... .+.|+++|+||+|+.+.. . .++...++...+++++++||++|.|++++|+++.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999987764 578999999999997532 2 23445777788899999999999999999999999
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 163 ~~~ 165 (167)
T cd01867 163 DIK 165 (167)
T ss_pred HHH
Confidence 875
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=198.39 Aligned_cols=156 Identities=28% Similarity=0.487 Sum_probs=134.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+.+++.+.+...+.++.+. ........++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999998888888763 33445566778899999999999999999999999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHHcC-CcEEEEccCCC
Q 030693 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+....++.|+++|+||+|+.+.. ...+..+++.+.+ +.++++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999996 5888887777789999999999996421 2234456777787 48999999999
Q ss_pred CChHHHHHHHHHH
Q 030693 158 YNFEKPFLYLARK 170 (173)
Q Consensus 158 ~~i~~~~~~i~~~ 170 (173)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=195.84 Aligned_cols=157 Identities=29% Similarity=0.556 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+++++.+.+.+.+.++.+.+.....+..++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888899988877777777777899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++++++.+..|+..+.... .+.|+++|+||.|+.... . ..+...+++..+++|+++||++|.|++++|++|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999887765 378999999999996533 2 344567777788999999999999999999999875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=195.30 Aligned_cols=158 Identities=36% Similarity=0.701 Sum_probs=146.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|++++|||||+++|..+.+...+.++.|.+.....+..++..+.+.+||++|++++..++..+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 95 VTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+++++|++.+..|+..+....+ +.|+++++||.|+.+ +... ++..+++.+++++|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999877 699999999999987 4443 345689999999999999999999999999999987
Q ss_pred h
Q 030693 172 A 172 (173)
Q Consensus 172 ~ 172 (173)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=195.39 Aligned_cols=158 Identities=31% Similarity=0.667 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec--CcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+||+++|.+|+|||||++++..+.+...+.++.+.+.....+... +..+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988888888898888766666665 677899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|||++++++++.+..|+..+....++.|+++|+||+|+... ... .+...++...+++++++|++++.|++++|++|..
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999877789999999999999653 333 3445778888999999999999999999999987
Q ss_pred Hh
Q 030693 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.+
T Consensus 161 ~~ 162 (162)
T cd04106 161 KC 162 (162)
T ss_pred hC
Confidence 53
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=203.95 Aligned_cols=159 Identities=23% Similarity=0.415 Sum_probs=137.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||+|+.+|..+.++..+.||.+.... ..+..++..+.+.+|||+|++.|..++..+++++|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999889999876554 5667788889999999999999999999999999999999
Q ss_pred EECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc--------------cccHHHHHHHHHcCC-cEEEEccCC
Q 030693 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (173)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~~~ 156 (173)
||++++++++.+. .|...+...+++.|+++|+||+|+.+. ...++...++++.++ .|++|||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999985 588878777789999999999999642 122345678888885 899999999
Q ss_pred CCC-hHHHHHHHHHHhh
Q 030693 157 NYN-FEKPFLYLARKLA 172 (173)
Q Consensus 157 ~~~-i~~~~~~i~~~i~ 172 (173)
+.+ ++++|+.+...++
T Consensus 160 ~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 160 SERSVRDVFHVATVASL 176 (222)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 985 9999999888654
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=195.18 Aligned_cols=158 Identities=31% Similarity=0.571 Sum_probs=134.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999998888777777775 33344566677788999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+..|+..+.... ++.|+++|+||+|+.+. ... .+...++..++++++++||++|.|+.++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 57999999999999653 222 234467777788999999999999999999999
Q ss_pred HHh
Q 030693 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 865
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=189.21 Aligned_cols=160 Identities=31% Similarity=0.597 Sum_probs=147.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
-+|++++|+.|+|||+|+.+|..+++......|+|+++....+.+.++.+++++|||+|+++|++..+.|++++.++++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++|+.+..|+...+... +++-+++++||.||.. +++. .+...++.+..+.+.++|+++|+|+.|.|-...+
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 99999999999999999998774 6888999999999976 3443 3556899999999999999999999999988877
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.|+
T Consensus 169 tIl 171 (214)
T KOG0086|consen 169 TIL 171 (214)
T ss_pred HHH
Confidence 664
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=194.50 Aligned_cols=159 Identities=30% Similarity=0.547 Sum_probs=136.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||+++++.+.+...+.++.+... ...+..++..+.+.+|||||++++..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998888777778876554 34566677789999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccc-c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+.+|+..+.... ++.|+++|+||+|+.+... . .+..++++..+++++++||++|.|++++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988887643 6899999999999976432 2 233567777889999999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+++.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=195.51 Aligned_cols=158 Identities=28% Similarity=0.469 Sum_probs=138.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998899999988877777777888999999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhc-C-CCCEEEEEeCCCCccccc----cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 95 VTARLTYKNVPTWHRDLCRVC-E-NIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~-~-~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+++++++..+..|+..+.+.. + +.|+++|+||+|+.+... ..+...++.+.+++++++||++|.|+.++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999886542 3 567999999999865321 2233467777888999999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.++
T Consensus 162 ~~~~ 165 (170)
T cd04108 162 ALTF 165 (170)
T ss_pred HHHH
Confidence 8765
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=198.36 Aligned_cols=161 Identities=27% Similarity=0.539 Sum_probs=138.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++++||+++|.+|+|||||++++..+.+...+.++.+.+. ...+.+++..+.+.+|||||++++..++..+++.+++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4579999999999999999999998888777788877555 345667778889999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+.. .. .+...++...+.+++++||++|.|+.++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999998887653 488999999999986532 22 3345677777889999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+++.+.
T Consensus 162 l~~~l~ 167 (189)
T PTZ00369 162 LVREIR 167 (189)
T ss_pred HHHHHH
Confidence 998764
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=197.83 Aligned_cols=158 Identities=31% Similarity=0.502 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
.||+++|++|+|||||+++|..+.+...+.++.+.... ..+..++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999988888888876543 34555677789999999999999999999999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccccc--------------cHHHHHHHHHcC-CcEEEEccCCC
Q 030693 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+....++.|+++|+||+|+.+... ..+..+++...+ +.++++||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999886 59999888778999999999999965321 122345666665 78999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030693 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.|++++|+++.+.++
T Consensus 160 ~~v~e~f~~l~~~~~ 174 (189)
T cd04134 160 RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998775
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=193.48 Aligned_cols=161 Identities=32% Similarity=0.617 Sum_probs=140.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|++|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45699999999999999999999999888877888888777777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCcccccc-HHHHHHHHHcC-CcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKN-LQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~-~~~~~~S~~~~~~i~~~ 163 (173)
+|||++++++++.+..|...+.... .+.|+++|+||+|+..+... .+..+++.+.+ ..++++||++|.|+.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 9999999999999999988876543 46899999999999764443 34567777777 47999999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
|+++++.+
T Consensus 163 ~~~~~~~~ 170 (170)
T cd04116 163 FEEAVRRV 170 (170)
T ss_pred HHHHHhhC
Confidence 99998764
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=201.04 Aligned_cols=159 Identities=30% Similarity=0.509 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC-cEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+||+++|.+|+|||||+++|..+.+...+.+|.+.+.....+..++ ..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999989888899999888777776654 578999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
||++++++++.+..|+..+.+.. .+.|+++|+||+|+.+ +... .+...++..+++.++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999988764 2468999999999964 3333 3445788888899999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+++.+.
T Consensus 161 l~~~l~ 166 (215)
T cd04109 161 LAAELL 166 (215)
T ss_pred HHHHHH
Confidence 998765
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=192.32 Aligned_cols=158 Identities=33% Similarity=0.621 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+++++.+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888877777777777889999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|+++++++..+..|+..+.... ++.|+++++||+|+.... . ..+...++...++.++++||+++.|+.++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999887654 689999999999997532 2 334567788888999999999999999999999886
Q ss_pred h
Q 030693 171 L 171 (173)
Q Consensus 171 i 171 (173)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 4
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=192.32 Aligned_cols=159 Identities=33% Similarity=0.596 Sum_probs=140.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999998888777788988888777787787788999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++.++..+..|+..+.+..+ +.|+++|+||+|+... .. .++...++...++.++++||++|.|++++|+++.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999887764 5899999999999753 22 23445677778899999999999999999999988
Q ss_pred Hh
Q 030693 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.+
T Consensus 163 ~i 164 (165)
T cd01868 163 EI 164 (165)
T ss_pred Hh
Confidence 75
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=195.97 Aligned_cols=159 Identities=33% Similarity=0.610 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999888778889888877777777777899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|+++++++..+..|+..+.... .+.|+++++||+|+.+.. .. .....++...+++++++||++|.|++++|+++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999988764 468999999999997533 22 33456777788899999999999999999999987
Q ss_pred hh
Q 030693 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
++
T Consensus 161 ~~ 162 (188)
T cd04125 161 II 162 (188)
T ss_pred HH
Confidence 75
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=192.02 Aligned_cols=160 Identities=32% Similarity=0.572 Sum_probs=141.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++....+.+||++|++++..++..+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999998888887788888888777777777788999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|++++++++.+..|+..+.... ++.|+++|+||.|+... .. ..+...++...++.++++||+++.|+.++|+++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999997753 68999999999999742 22 33445677788999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 164 ~~~ 166 (168)
T cd01866 164 EIY 166 (168)
T ss_pred HHH
Confidence 875
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=191.89 Aligned_cols=160 Identities=33% Similarity=0.608 Sum_probs=138.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999888887778888877777777777777899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCC-cEEEEccCCCCChHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i 167 (173)
|||++++++++.+..|+..+.... ++.|+++|+||+|+.+.. .. .+..++++..++ .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999997753 578999999999997543 22 344567777765 68999999999999999999
Q ss_pred HHHh
Q 030693 168 ARKL 171 (173)
Q Consensus 168 ~~~i 171 (173)
++.+
T Consensus 162 ~~~l 165 (165)
T cd01864 162 ATEL 165 (165)
T ss_pred HHhC
Confidence 8753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=191.45 Aligned_cols=158 Identities=30% Similarity=0.549 Sum_probs=134.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||+++++.+.+...+.++.+ +.....+..++..+.+++||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999988877777765 44445666677788999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+..|+..+.... .+.|+++|+||+|+.... .. .+...++...+++++++||++|.|+.++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 589999999999986532 22 234566667788999999999999999999998
Q ss_pred HHh
Q 030693 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 764
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=190.56 Aligned_cols=158 Identities=30% Similarity=0.565 Sum_probs=135.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|++|+|||||++++..+.+...+.++.+... ......++..+.+.+||++|++++..++..+++.++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999998888777778776443 34556677778899999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++++.+..|+..+.+.. .+.|+++|+||+|+.++.... +..+++...+++++++||++|.|++++|+++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999988888887653 588999999999997754433 445677778899999999999999999999987
Q ss_pred Hh
Q 030693 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 64
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=195.42 Aligned_cols=158 Identities=30% Similarity=0.473 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+||+++|++|+|||||++++..+.+...+.++.+.+... .+... +..+.+.+|||+|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999888888887766543 34443 6778999999999999999999999999999999
Q ss_pred EECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc------ccHHHHHHHHHcCC-cEEEEccCCCCChHHHH
Q 030693 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (173)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~ 164 (173)
||++++++++.+. .|+..+....++.|+++|+||+|+.... ...+..+++...++ +++++||++|.|+.++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence 9999999999986 4888887766789999999999986532 23345577888887 89999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
+.+.+.++
T Consensus 160 ~~l~~~~~ 167 (187)
T cd04132 160 DTAIEEAL 167 (187)
T ss_pred HHHHHHHH
Confidence 99998765
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=197.82 Aligned_cols=160 Identities=28% Similarity=0.571 Sum_probs=139.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
++||+++|++|+|||||++++..+.+...+.++.+.+.....+.. ++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999998888877888888877666665 4567899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|||++++++++.+.+|+..+.+.. ...|+++|+||+|+.+. .. ..+..++++..++.++++||++|.|+.++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999987654 35678999999999763 22 334557888888999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
++.+.
T Consensus 162 ~~~~~ 166 (211)
T cd04111 162 TQEIY 166 (211)
T ss_pred HHHHH
Confidence 98764
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=195.24 Aligned_cols=159 Identities=29% Similarity=0.600 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+||+++|++|+|||||++++..+.+.. .+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999998887753 5677777777666677777889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|++++++++.+..|+..+.... .+.|+++|+||+|+.. +.. ..+...++..++++++++||++|.|+.++|+++.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998775 4789999999999964 322 33455777788899999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 161 ~~~ 163 (191)
T cd04112 161 ELK 163 (191)
T ss_pred HHH
Confidence 764
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=194.16 Aligned_cols=159 Identities=27% Similarity=0.478 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+||+++|.+|+|||||+++|..+.+.. .+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888864 5788888777666777888889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-----c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
||++++++++.+..|+..+....++.|+++|+||+|+.... . ..+..+++...+++++++||+++.|+.++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999989999988766689999999999985421 1 12345677778899999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 161 i~~~~~ 166 (193)
T cd04118 161 VAEDFV 166 (193)
T ss_pred HHHHHH
Confidence 998764
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=197.72 Aligned_cols=161 Identities=32% Similarity=0.549 Sum_probs=142.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||++|++++...+..+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999888877788999988888888888888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|||++++++++.+..|+..+.... .+.|+++|+||+|+.+. ... .....++..++++++++||++|.|++++|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999988765 47999999999998653 233 344567777899999999999999999999998
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 171 ~~i~ 174 (216)
T PLN03110 171 LEIY 174 (216)
T ss_pred HHHH
Confidence 8764
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=195.72 Aligned_cols=157 Identities=32% Similarity=0.545 Sum_probs=133.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|.+|+|||||+++|..+.+...+.++.+... ......++..+.+.+|||+|++++..++..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999998888777778876443 3345566777899999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 95 VTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++++++++.+..|+..+.... ++.|+++|+||+|+.+. ... .+..+++...++.++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988886643 47899999999999652 222 234567777889999999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 160 ~~l~ 163 (190)
T cd04144 160 RALR 163 (190)
T ss_pred HHHH
Confidence 8764
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=190.81 Aligned_cols=157 Identities=29% Similarity=0.482 Sum_probs=134.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEEC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 95 (173)
|+++|.+|+|||||++++..+.+...+.++.+... ...+..++..+.+.+|||||++.+..++..+++++|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777775443 34556677788999999999999999999999999999999999
Q ss_pred CChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHHcCC-cEEEEccCCCCC
Q 030693 96 TARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISAKSNYN 159 (173)
Q Consensus 96 ~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S~~~~~~ 159 (173)
+++++++.+. .|+..+....++.|+++|+||+|+.... ...+..++++..+. .++++||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999986 5999998877899999999999986521 12234467888876 899999999999
Q ss_pred hHHHHHHHHHHhhC
Q 030693 160 FEKPFLYLARKLAG 173 (173)
Q Consensus 160 i~~~~~~i~~~i~~ 173 (173)
++++|+.+.+.+++
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988753
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=189.47 Aligned_cols=155 Identities=28% Similarity=0.456 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+++++.+.+...+.++.+.+. ..........+.+.+||++|++++..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777776444 334455667789999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCcc-ccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|++++++++.+..|+..+.... ++.|+++|+||+|+.+ +.... +...++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999888776642 5799999999999976 33333 3456777788999999999999999999999
Q ss_pred HH
Q 030693 168 AR 169 (173)
Q Consensus 168 ~~ 169 (173)
.+
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=189.41 Aligned_cols=159 Identities=31% Similarity=0.592 Sum_probs=139.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-CcchhhccCCCEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII 91 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~i~ 91 (173)
.+||+++|++|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999998888888888888877778888888999999999999886 578889999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCC---CCChHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKS---NYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~---~~~i~~~~ 164 (173)
|||++++++++.+..|+..+.... .+.|+++|+||+|+.... .. ....+++...+++++++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887764 579999999999997533 33 344577788889999999999 89999999
Q ss_pred HHHHHHh
Q 030693 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998865
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=187.85 Aligned_cols=158 Identities=32% Similarity=0.562 Sum_probs=133.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||+++++.+.+...+.++.+... ......++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999998887766677765333 33455667778999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+..|+..+.... .+.|+++++||+|+.+.. .. .+..+++...+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988887652 578999999999997643 22 344567777789999999999999999999998
Q ss_pred HHh
Q 030693 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=188.08 Aligned_cols=159 Identities=35% Similarity=0.703 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+.....++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999888887777788888777777777777789999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++.+++.+..|+..+.... ++.|+++++||+|+.. .... +...+++...+++++++|++++.|+.++++++.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987765 6899999999999876 3323 34556777888999999999999999999999998
Q ss_pred hh
Q 030693 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
+.
T Consensus 161 ~~ 162 (164)
T smart00175 161 IL 162 (164)
T ss_pred Hh
Confidence 75
|
Rab GTPases are implicated in vesicle trafficking. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=182.59 Aligned_cols=159 Identities=35% Similarity=0.625 Sum_probs=143.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
-+||+++|..|+|||+|+++|..+-+++....|+|+++...++.++++.+++++|||+|+++|+++++.|++.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-cccHHH-HHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++..++|+-+..|+.++.++.. .+--++|+||+|+.++ ++++.. .++......-|+++||+.-+|++.+|..++-
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 999999999999999999999863 4446899999999875 444443 4677666677889999999999999998876
Q ss_pred Hh
Q 030693 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.+
T Consensus 167 rl 168 (213)
T KOG0095|consen 167 RL 168 (213)
T ss_pred HH
Confidence 54
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=187.87 Aligned_cols=158 Identities=27% Similarity=0.542 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC--CcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
+||+++|++|+|||||++++..+ .+...+.++.|.+........+ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999998754 5777888888888766666554 56799999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|||+++++++..+..|+..+....++.|+++|+||+|+.+.. ... ....+....+++++++||+++.|+.++|+.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 9999999999999999999988776679999999999996543 232 23455666788999999999999999999999
Q ss_pred HHh
Q 030693 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 875
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=188.27 Aligned_cols=158 Identities=30% Similarity=0.564 Sum_probs=134.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+ +........++..+.+.+||+||++++..++..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998888777777765 333445566777899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|++++++++.+..|...+.... .+.|+++|+||+|+.+. ... .....++...+.+++++||++|.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999888876653 47899999999999763 223 3345677788899999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 764
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=195.88 Aligned_cols=154 Identities=29% Similarity=0.483 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+++|+.+.+.. +.++.+.+...... ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988865 46777766544333 4678999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCcc--------------------ccc-cHHHHHHHHHcC-----
Q 030693 94 DVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN--------------------RQV-KAKQVTFHRKKN----- 146 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~--------------------~~~-~~~~~~~~~~~~----- 146 (173)
|++++++++.+..|+..+.+. .++.|+++|+||+|+.+ +.+ .++...++.+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999998877776654 35789999999999864 222 234457777765
Q ss_pred ---------CcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 147 ---------LQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 147 ---------~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++|+++||++|.|++++|+.+++.++
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998765
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=192.24 Aligned_cols=156 Identities=21% Similarity=0.394 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhhC-----CcccccccceeE-EEEEEE--------EEecCcEEEEEEEeCCCcccccC
Q 030693 13 SFKLVIVGDGGTGKTTFVK-RHLTG-----EFEKKYEPTIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~-~l~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
.+||+++|.+|+|||||+. ++..+ .+...+.||.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 54433 344566778752 322222 14567889999999999975 3
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcc--------------------ccc-c
Q 030693 78 LRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQV-K 135 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~--------------------~~~-~ 135 (173)
....+++++|++++|||++++.|++.+. .|+..+....++.|+++|+||+|+.+ +.+ .
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 5566899999999999999999999997 59999887777899999999999863 222 3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 136 AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
++..+++++.+++|++|||++|.|++++|+.++++
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 35568999999999999999999999999999875
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=186.85 Aligned_cols=159 Identities=34% Similarity=0.608 Sum_probs=139.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998888776788888777777778888889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-cc-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|+++++++..+..|+..+.... ++.|+++++||+|+.. .. ...+...++...++.++++||++|.|+.++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987765 6789999999999874 22 233445677778899999999999999999999998
Q ss_pred Hh
Q 030693 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=185.48 Aligned_cols=158 Identities=35% Similarity=0.631 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+.....++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988877767888888777666667777889999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++++++.+..|+..+.... ++.|+++|+||+|+..... ..+...++...+++++++|+++|.|+.++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999999887764 5899999999999975443 344567888889999999999999999999999875
Q ss_pred h
Q 030693 171 L 171 (173)
Q Consensus 171 i 171 (173)
+
T Consensus 161 ~ 161 (161)
T cd01863 161 I 161 (161)
T ss_pred C
Confidence 3
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=193.99 Aligned_cols=160 Identities=33% Similarity=0.565 Sum_probs=141.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999998888877888888888777777777888999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++++.+..|+..+.... ++.|+++++||+|+.+.. . ..+..+++..++++++++||+++.|++++|+++++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999988876654 579999999999997632 2 33456788888999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.++
T Consensus 166 ~~~ 168 (210)
T PLN03108 166 KIY 168 (210)
T ss_pred HHH
Confidence 764
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=185.88 Aligned_cols=158 Identities=32% Similarity=0.576 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+++++...+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988887777888887777777777777789999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++++++.+..|+..+.... .+.|+++++||+|+.+ +.... +...++...++.++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999999999999887654 3699999999999944 33333 3456777778999999999999999999999875
Q ss_pred h
Q 030693 171 L 171 (173)
Q Consensus 171 i 171 (173)
+
T Consensus 161 l 161 (161)
T cd01861 161 L 161 (161)
T ss_pred C
Confidence 3
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=187.03 Aligned_cols=159 Identities=31% Similarity=0.631 Sum_probs=136.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+.+.........+..+.+.+||+||++.+..++..+++++|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777788887776666777778889999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcC-----CCCEEEEEeCCCCcc-cc-ccHHHHHHHHHcC-CcEEEEccCCCCChHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~-~~-~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~ 165 (173)
|++++++++.+..|...+..... +.|+++|+||+|+.. .. ...+...++...+ .+++++|+++|.|+.++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888887766543 799999999999974 22 2334456666666 7999999999999999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
++.+.++
T Consensus 161 ~i~~~~~ 167 (172)
T cd01862 161 TIARKAL 167 (172)
T ss_pred HHHHHHH
Confidence 9998765
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=191.66 Aligned_cols=164 Identities=82% Similarity=1.404 Sum_probs=147.4
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+...+||+++|++|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|++++...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34567999999999999999999888888888889999998888877778888999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+++|||++++.++..+..|+..+....++.|+++++||+|+.++....+...++...++.++++|+++|.|+++.|.+++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999998877778999999999999776555555677778889999999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.++
T Consensus 165 ~~l~ 168 (215)
T PTZ00132 165 RRLT 168 (215)
T ss_pred HHHh
Confidence 8875
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=187.14 Aligned_cols=155 Identities=26% Similarity=0.456 Sum_probs=131.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+|++++|++|+|||||+.++..+.+...+.++. .+........++..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999888888877776 3444556677777899999999999999999999999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-------------ccc-HHHHHHHHHcCC-cEEEEccCCC
Q 030693 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~~-~~~~~~~~~~~~-~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+....++.|+++++||+|+... ... ++...+++..+. .++++||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999999885 588888776678999999999998642 122 234567777777 8999999999
Q ss_pred CChHHHHHHHHH
Q 030693 158 YNFEKPFLYLAR 169 (173)
Q Consensus 158 ~~i~~~~~~i~~ 169 (173)
.|++++|+.++-
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=190.47 Aligned_cols=157 Identities=22% Similarity=0.297 Sum_probs=125.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.++||||||++++..+.+. .+.||.|.+..... ...+.+.+||+||+++++.+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~----~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999998877765 45788876654332 35689999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhh--hcCCCCEEEEEeCCCCccccccHHHHHHHHHcC-----CcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 163 (173)
+|+|+++++++..+..++..+.. ..++.|+++++||+|+.++....+......... +.++++||++|+|+.++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 99999999999888877766643 236899999999999987654333333222221 23568999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|++|++.++
T Consensus 170 ~~~l~~~~~ 178 (181)
T PLN00223 170 LDWLSNNIA 178 (181)
T ss_pred HHHHHHHHh
Confidence 999999875
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=183.11 Aligned_cols=172 Identities=28% Similarity=0.471 Sum_probs=150.8
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030693 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|.++....-+.-.+|++++|..-+|||+|+-++..++|...+.+|....+....+.+++....+.+|||+|+++|..+-+
T Consensus 1 ~~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP 80 (218)
T KOG0088|consen 1 MMLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP 80 (218)
T ss_pred CCccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc
Confidence 44444455555679999999999999999999999999999888887778778888888889999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCC
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
.|+++++++++|||++++.||+.++.|..+++.... .+.+++|+||+||... .+ ..+....+..-+..|+++||+.+
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N 160 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN 160 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence 999999999999999999999999999999998764 4668999999999763 33 34556788889999999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030693 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.||.|+|+.+....+
T Consensus 161 ~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 161 VGISELFESLTAKMI 175 (218)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999987664
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=189.24 Aligned_cols=159 Identities=21% Similarity=0.305 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhhccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~~~ 85 (173)
+||+++|.+|+|||||+++++.+.+...+.|+.+.+.....+..++..+.+.+|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999888878888776665555666777899999999997654321 2334789
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhh----cCCCCEEEEEeCCCCcccc-ccHH-HHHHH-HHcCCcEEEEccCCCC
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQ-VKAK-QVTFH-RKKNLQYYEISAKSNY 158 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~-~~~~-~~~~~-~~~~~~~~~~S~~~~~ 158 (173)
+|++++|||++++++++.+..|+..+... .++.|+++|+||+|+.... ...+ ...++ +..+++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 99999999999999999999998888765 2579999999999996532 2222 33444 3568999999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030693 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++|+.+++.++
T Consensus 161 ~v~~lf~~i~~~~~ 174 (198)
T cd04142 161 HILLLFKELLISAT 174 (198)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998764
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=185.46 Aligned_cols=158 Identities=25% Similarity=0.388 Sum_probs=132.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+. .....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999998887777777653 33345666777889999999999999999999999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcCC-cEEEEccCCC
Q 030693 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+....++.|+++++||+|+.+.. . ..+...+++..++ .++++||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999886 5888887666789999999999986431 1 2234466777775 7999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030693 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.|++++|+.+++.++
T Consensus 160 ~gi~~~f~~~~~~~~ 174 (174)
T cd04135 160 KGLKTVFDEAILAIL 174 (174)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998764
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=189.79 Aligned_cols=160 Identities=31% Similarity=0.567 Sum_probs=135.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|.+|+|||||+++|+.+.+. .+.++.+.+.....+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4699999999999999999998887764 567888887777777777778899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHH-HHHHHhhhc--CCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 92 MFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|||++++++++.+.. |...+.... .+.|+++|+||+|+..... ..+...++...++.++++||+++.|++++|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 171 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE 171 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999876 655555432 4679999999999975332 23445677788899999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 172 l~~~~~ 177 (211)
T PLN03118 172 LALKIM 177 (211)
T ss_pred HHHHHH
Confidence 998765
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=181.30 Aligned_cols=161 Identities=27% Similarity=0.550 Sum_probs=142.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
-+++++++|.+-+|||+|++.|..+++.+-..||.|+++...-+.. ++..+++++|||+|+++|+++++.|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 4689999999999999999999999999999999999987765554 467899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCC-EEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p-~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+|||+++++||+.+..|+.+-..+. |.++ +++|++|+||.. +++. ++...++..++..|+++|+++|.|++|.|.
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence 9999999999999999998876654 5555 578999999976 4444 455689999999999999999999999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
.+.+.+.
T Consensus 167 mlaqeIf 173 (213)
T KOG0091|consen 167 MLAQEIF 173 (213)
T ss_pred HHHHHHH
Confidence 9998764
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=188.22 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=123.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+. .+.+|.|.+..... ...+.+.+||+||+++++..+..+++++|+++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999998777664 35677776654332 25688999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|||++++.++..+..|+..+... .++.|+++|+||+|+.+....++..++.. .....++++||++|.|+.++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 999999999998888777666442 36799999999999976433333333332 12346899999999999999
Q ss_pred HHHHHH
Q 030693 164 FLYLAR 169 (173)
Q Consensus 164 ~~~i~~ 169 (173)
|++|.+
T Consensus 162 ~~~l~~ 167 (168)
T cd04149 162 LTWLSS 167 (168)
T ss_pred HHHHhc
Confidence 999975
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=181.98 Aligned_cols=159 Identities=31% Similarity=0.562 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+.+.........+..+.+.+||+||++.+..++..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988877666666655655556666667789999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++++++.+..|+..+....+ +.|+++++||+|+... ... .+..+.+...+++++++|++++.|+.++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998877653 7899999999999753 222 33446777788999999999999999999999987
Q ss_pred hh
Q 030693 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
++
T Consensus 161 ~~ 162 (162)
T cd04123 161 MI 162 (162)
T ss_pred hC
Confidence 63
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=183.35 Aligned_cols=159 Identities=27% Similarity=0.533 Sum_probs=134.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++++..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 47999999999999999999998888777777776443 45556677778999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcC-CcEEEEccCCCCChHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|++++++++....|...+.+.. .+.|+++++||.|+.... . ..+...+++..+ ++++++||+++.|+.++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988887642 589999999999996532 2 233446666766 789999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
+.+++
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98764
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=187.07 Aligned_cols=157 Identities=24% Similarity=0.327 Sum_probs=124.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|.+|+|||||++++..+.+. .+.||.+.+...... ..+.+.+||+||+++++..+..+++++|+++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTY----KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999998777764 456777766543332 5688999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|++++++++....|+..+... .++.|+++|+||+|+.+.....+..+... ...+.++++||++|.|+.++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 999999999999888877776432 35789999999999976433233222221 12335678999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+||.+.+.
T Consensus 166 ~~~l~~~~~ 174 (175)
T smart00177 166 LTWLSNNLK 174 (175)
T ss_pred HHHHHHHhc
Confidence 999988764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=183.78 Aligned_cols=160 Identities=19% Similarity=0.233 Sum_probs=135.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
+.+||+++|.+|+|||||+++++.+.+. ..+.+|.+.......+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4689999999999999999999999887 778888887776666777777789999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCC-cEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++++++.+..|+..+... .+.|+++|+||+|+.+.. . ..+..+++...++ .++++||+++.|++++|+.+
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 161 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKL 161 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHH
Confidence 999999999999888888766432 479999999999996432 1 2234566777776 46999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
++.++
T Consensus 162 ~~~~~ 166 (169)
T cd01892 162 ATAAQ 166 (169)
T ss_pred HHHhh
Confidence 98764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=181.62 Aligned_cols=151 Identities=23% Similarity=0.370 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+.+++.+.+.+.+.++.+ .. ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999998888766555533 33 34566777788999999999975 34678899999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc---ccccH-HHHHHHHHc-CCcEEEEccCCCCChHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~---~~~~~-~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|+++++||+.+..|+..+.... ++.|+++|+||+|+.. +.... +..+++++. ++.|++|||++|.|++++|+.
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999997764 5789999999999842 33333 334677665 589999999999999999999
Q ss_pred HHHHh
Q 030693 167 LARKL 171 (173)
Q Consensus 167 i~~~i 171 (173)
+++.+
T Consensus 154 ~~~~~ 158 (158)
T cd04103 154 AAQKI 158 (158)
T ss_pred HHhhC
Confidence 98753
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=183.84 Aligned_cols=153 Identities=23% Similarity=0.362 Sum_probs=123.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|.+++|||||++++..+.+.. +.+|.+....... ...+.+.+||+||+++++..+..+++++|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~~----~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETVE----YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEEE----ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999988776544 6777765554322 256899999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHHcC------CcEEEEccCCCCChHHHHHH
Q 030693 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~~~ 166 (173)
+++++++..+..|+..+... ..+.|+++|+||+|+.++....+..+++...+ ..++++||++|.|++++|++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999999998888887643 24689999999999976544444444443222 25789999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|++.++
T Consensus 156 l~~~~~ 161 (169)
T cd04158 156 LSRQLV 161 (169)
T ss_pred HHHHHh
Confidence 998765
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=179.86 Aligned_cols=156 Identities=36% Similarity=0.712 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++++|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888877888888888888888778899999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCc--cccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|+++++++..+..|+..+.... ++.|+++++||+|+. ......+...++...+++++++|++++.|+.+++++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999988875 679999999999995 333444555777778999999999999999999999863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=182.25 Aligned_cols=157 Identities=22% Similarity=0.385 Sum_probs=129.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc-ccCcchhhccCCCEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i~v~ 93 (173)
||+++|++|+|||||+++++.+.+...+.++.+... ......++..+.+.+||+||++. ....+..+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998887766666664333 34556677788999999999985 3456777899999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCC-CChHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN-YNFEKPFLYL 167 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~-~~i~~~~~~i 167 (173)
|++++++++.+..|+..+.... .+.|+++|+||+|+... ... .+..+++...+++++++||+++ .|+.++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887653 48999999999998653 223 3445778888899999999999 5999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=192.15 Aligned_cols=157 Identities=29% Similarity=0.507 Sum_probs=131.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+++++.+.+...+.+|.+ +.....+.+++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998887788876 444556677778899999999999999888888899999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh----------cCCCCEEEEEeCCCCcc-ccccH-HHHHHHHH-cCCcEEEEccCCCCCh
Q 030693 94 DVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRK-KNLQYYEISAKSNYNF 160 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----------~~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~-~~~~~~~~S~~~~~~i 160 (173)
|++++++|+.+..|+..+... ..+.|+++|+||+|+.. +.... +..+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999888888643 24789999999999975 33332 33344443 4678999999999999
Q ss_pred HHHHHHHHHHh
Q 030693 161 EKPFLYLARKL 171 (173)
Q Consensus 161 ~~~~~~i~~~i 171 (173)
+++|++|.+..
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=181.76 Aligned_cols=157 Identities=31% Similarity=0.512 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
.||+++|++|+|||||++++..+.+...+.++.+.... ..+..++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 68999999999999999999998888778888765443 34566777889999999999999988888999999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccccc--------------cHHHHHHHHHcC-CcEEEEccCCC
Q 030693 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN 157 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~S~~~~ 157 (173)
|++++++++.+. .|+..+.+..++.|+++|+||+|+.+... ..+..+++...+ .+++++||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 999999998886 58888877667999999999999865321 123345555555 47999999999
Q ss_pred CChHHHHHHHHHHh
Q 030693 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
.|++++|+++.+..
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=182.02 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+++|||||++++..+.+. .+.|+.|.+...... ..+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999998777776 467787766543322 5688999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|++++.+++.+..|+..+... ..+.|+++++||+|+.+.....+...... .....++++||++|.|++++|++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 999999999888877666432 24689999999999976433222222221 12345779999999999999999
Q ss_pred HHH
Q 030693 167 LAR 169 (173)
Q Consensus 167 i~~ 169 (173)
|.+
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=185.15 Aligned_cols=157 Identities=20% Similarity=0.310 Sum_probs=123.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|++|+|||||++++..+.+.. +.+|.+.+..... ...+.+.+||+||+++++.++..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVE----YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346999999999999999999987777754 5677776654332 25689999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|+++++++.....++..+... ..+.|+++|+||.|+.+.....+...... ...+.++++||++|.|++++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 999999999999888766666432 35789999999999976433232222111 12234678999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|++|.+.+.
T Consensus 170 ~~~l~~~i~ 178 (182)
T PTZ00133 170 LDWLSANIK 178 (182)
T ss_pred HHHHHHHHH
Confidence 999998765
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=187.08 Aligned_cols=157 Identities=20% Similarity=0.336 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhcc-CCCEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAII 91 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-~~~~~i~ 91 (173)
+||+++|.+|+|||||+++|..+.+. ..+.++.+.+.....+.+++....+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999998888875 5666776656666677777788999999999998 233445666 8999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .... +..+++...++.++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887753 57999999999999653 2322 3456777788999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 159 ~~~~~ 163 (221)
T cd04148 159 VRQIR 163 (221)
T ss_pred HHHHH
Confidence 98763
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=177.62 Aligned_cols=161 Identities=34% Similarity=0.609 Sum_probs=136.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||++++..+.+.+.+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999988888777777888877777677777778899999999999999988999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccccHH-HHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|||++++++++.+..|+..+.... .+.|+++|+||+|+.+ +....+ ...+.......++++|+++|.|++++|+++.
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999989998887765 3789999999999975 333333 3355555668899999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.++
T Consensus 166 ~~~~ 169 (169)
T cd04114 166 CRLI 169 (169)
T ss_pred HHhC
Confidence 8653
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=182.94 Aligned_cols=160 Identities=21% Similarity=0.277 Sum_probs=128.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
+.+||+++|.+|+|||||++++..+.+... .++.|.+........ ++..+.+.+|||||++++...|..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999988776543 677776666555544 346789999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHHHHHHH------cCCcEEEEccCCCCChHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK------KNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~i~~ 162 (173)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+.....+...+... .++.++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 9999999998888888887776543 47999999999999754333333333221 124688999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
++++|.+.+.
T Consensus 161 l~~~l~~~l~ 170 (183)
T cd04152 161 GLEKLYEMIL 170 (183)
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=180.29 Aligned_cols=160 Identities=33% Similarity=0.605 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec---------CcEEEEEEEeCCCcccccCcchhhcc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGYYI 84 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~G~~~~~~~~~~~~~ 84 (173)
+|.+.+|.+|+|||+++.++..+++.....+|.|+++.+..+.+. +..+.+++|||+|+++|++++.+|++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 688899999999999999999999999999999999988776542 23588999999999999999999999
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccc-cHH-HHHHHHHcCCcEEEEccCCCCCh
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.+-++++++|+++..||-++.+|+.++..+ +.+--+++++||+||.+... .++ ..+++.+++++||++||-+|.|+
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV 169 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence 999999999999999999999999999765 56777999999999988444 333 45899999999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 030693 161 EKPFLYLARKLAG 173 (173)
Q Consensus 161 ~~~~~~i~~~i~~ 173 (173)
.+..+.+...+|+
T Consensus 170 ~kave~LldlvM~ 182 (219)
T KOG0081|consen 170 EKAVELLLDLVMK 182 (219)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888763
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=181.65 Aligned_cols=156 Identities=18% Similarity=0.326 Sum_probs=123.7
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.....+||+++|++|+|||||++++....+ ..+.++.|........ ..+.+.+||+||++.++..+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEY----EGYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 345679999999999999999999876643 4556777654443333 35789999999999988899999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~ 161 (173)
+++|+|++++.++.....|+..+... ..+.|+++|+||+|+.+.....+...+.. ..+++++++||++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 99999999999998888777776542 36899999999999976543333333332 345689999999999999
Q ss_pred HHHHHHHH
Q 030693 162 KPFLYLAR 169 (173)
Q Consensus 162 ~~~~~i~~ 169 (173)
++|++++.
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=176.56 Aligned_cols=158 Identities=30% Similarity=0.572 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999998888777677665333 344566677889999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc-cc-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|++++.++..+..|+..+.... .+.|+++|+||+|+.. +. ...+...++...+++++++|++++.|+.++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999888887763 5899999999999976 22 233344667777899999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=181.77 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=125.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEEC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 95 (173)
|+++|++|+|||||++++..+.+...+.||.|.... .++...+.+.+||+||+++++..+..+++++|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~----~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV----AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE----EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 789999999999999999988887778888876532 2344678999999999999999999999999999999999
Q ss_pred CChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH------HHHHHHHcCCcEEEEccCC------CCChHHH
Q 030693 96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKS------NYNFEKP 163 (173)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~S~~~------~~~i~~~ 163 (173)
+++.++...+.|+..+....+++|+++|+||+|+.......+ ...++.+.++.++++||++ ++|++++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 999999998888888865557899999999999976433222 2345566678889988888 9999999
Q ss_pred HHHHHH
Q 030693 164 FLYLAR 169 (173)
Q Consensus 164 ~~~i~~ 169 (173)
|+.++.
T Consensus 158 ~~~~~~ 163 (164)
T cd04162 158 LSQLIN 163 (164)
T ss_pred HHHHhc
Confidence 998764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-31 Score=179.37 Aligned_cols=159 Identities=31% Similarity=0.490 Sum_probs=131.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+.||+++|++|+|||||++++..+.+.+.+.++.+.... ..+..++..+.+.+||++|++.+......+++++++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 368999999999999999998888887766666544432 3455566778899999999998887777788999999999
Q ss_pred EECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-----------c-cHHHHHHHHHcCC-cEEEEccCCCC
Q 030693 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------V-KAKQVTFHRKKNL-QYYEISAKSNY 158 (173)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~-~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (173)
||++++++++.+. .|+..+....++.|+++|+||+|+.+.. . ..+...+++..++ .++++||++|.
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 9999999999987 5999998777889999999999985421 1 2234467777774 89999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030693 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++|+++.+.++
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998765
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-31 Score=176.94 Aligned_cols=155 Identities=30% Similarity=0.524 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|+|||||+++|..+.+...+.++.. +.........+..+.+++||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999998888666666654 333345566677889999999999998888888899999999999
Q ss_pred ECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCccccc-------------cHHHHHHHHHcCC-cEEEEccCCCC
Q 030693 94 DVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNY 158 (173)
Q Consensus 94 d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (173)
|+++++++..... |+..+....++.|+++|+||+|+.+... ..+..+++...+. +++++|+++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999887764 7888877767899999999999876442 2234466677776 99999999999
Q ss_pred ChHHHHHHHHH
Q 030693 159 NFEKPFLYLAR 169 (173)
Q Consensus 159 ~i~~~~~~i~~ 169 (173)
|+.++++++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=176.59 Aligned_cols=158 Identities=18% Similarity=0.300 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||++++..+.+...+..+.. . ........+..+.+.+||+||++.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999998888655433322 1 2233445567789999999999988888888889999999999
Q ss_pred ECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccccc----HHHHHHHHHc-C-CcEEEEccCCCCChHHHHHH
Q 030693 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK-N-LQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~-~-~~~~~~S~~~~~~i~~~~~~ 166 (173)
|++++.+++.+. .|+..+....++.|+++|+||+|+.+.... .+...++.+. . ..++++||+++.|++++|+.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 999999999975 588888776678999999999999764432 1222333333 2 37999999999999999999
Q ss_pred HHHHhhC
Q 030693 167 LARKLAG 173 (173)
Q Consensus 167 i~~~i~~ 173 (173)
+.+.+.|
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9988765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=178.39 Aligned_cols=151 Identities=24% Similarity=0.389 Sum_probs=119.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC-cccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+|+++|.+|+|||||++++..+. ....+.++.|.+..... ...+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFE----KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEE----ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999988765 35566778776544322 35688999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh----cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|++++.++.....|+..+... ..++|+++|+||+|+.+.....+...... .....++++||++|.|++++|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 999999988888887776543 14799999999999976433222222211 123458999999999999999
Q ss_pred HHHHH
Q 030693 165 LYLAR 169 (173)
Q Consensus 165 ~~i~~ 169 (173)
++|.+
T Consensus 157 ~~l~~ 161 (162)
T cd04157 157 QWLQA 161 (162)
T ss_pred HHHhc
Confidence 99875
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-31 Score=177.04 Aligned_cols=156 Identities=24% Similarity=0.429 Sum_probs=129.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|..||||||+++++..+... ...||.|.+...+.+ .++.+.+||++|+..++..|..|+.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence 56899999999999999999998766544 367888877766665 6688999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH------HcCCcEEEEccCCCCChHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~S~~~~~~i~~ 162 (173)
||+|.++++.+......+..+... ..++|+++++||+|+.+.....+...... ...+.++.+|+.+|+|+.|
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 999999998888888777776553 35899999999999987554444433222 2345689999999999999
Q ss_pred HHHHHHHHh
Q 030693 163 PFLYLARKL 171 (173)
Q Consensus 163 ~~~~i~~~i 171 (173)
.++||.++|
T Consensus 167 ~l~WL~~~~ 175 (175)
T PF00025_consen 167 GLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=165.33 Aligned_cols=162 Identities=34% Similarity=0.546 Sum_probs=145.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
-.--+|.+++|.-|+|||+|+.+|...++-...+.++|+++....+.+.+..+++++|||.|+++|+..++.|++++.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 34468999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++|||++.++.+..+..|+..-+.. .|+..+++++||.|+.. +.+ -++..+++.+.++.|+++|+++|.++.+.|-.
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence 9999999999999999999887765 37888999999999986 333 34556899999999999999999999999877
Q ss_pred HHHHh
Q 030693 167 LARKL 171 (173)
Q Consensus 167 i~~~i 171 (173)
.++++
T Consensus 168 ~akki 172 (215)
T KOG0097|consen 168 TAKKI 172 (215)
T ss_pred HHHHH
Confidence 77665
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=172.95 Aligned_cols=156 Identities=33% Similarity=0.593 Sum_probs=132.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|++|+|||||+++++.+.+...+.++.+ +........++..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999988777777777765 4444555566667899999999999998999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 95 VTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
+++++++..+..|...+..... ..|+++++||+|+.. .... .+..+++...+++++++|++++.|+++++++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999988888877654 899999999999976 3222 34456777778899999999999999999999876
Q ss_pred h
Q 030693 171 L 171 (173)
Q Consensus 171 i 171 (173)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 4
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=176.44 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=121.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.+||+++|++|+|||||++++..+.+.. ..++.+.+...... ....+.+||+||++++...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVY----KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEE----CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999988877664 46777766543332 46889999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+|+++++++.....++..+... ..+.|+++++||+|+.+.....+..+.. ...++.++++||++|.|++++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence 99999999888887766666443 2579999999999997643222222211 2344678999999999999999
Q ss_pred HHHHH
Q 030693 165 LYLAR 169 (173)
Q Consensus 165 ~~i~~ 169 (173)
++|.+
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99975
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=177.14 Aligned_cols=159 Identities=32% Similarity=0.584 Sum_probs=143.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+|++++|.+|+|||+|+.+|+.+.+...+.||.+ +.+.....+++..+.+.++||+|++++..+...++..++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 6677788888999999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc-ccccHH-HHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
||+++++.||+.+..++..+.+.. .++|+++||||+|+.. +.+..+ ...++..++++|+++||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999984432 4789999999999987 555444 468899999999999999999999999999
Q ss_pred HHHh
Q 030693 168 ARKL 171 (173)
Q Consensus 168 ~~~i 171 (173)
.+.+
T Consensus 161 ~r~~ 164 (196)
T KOG0395|consen 161 VREI 164 (196)
T ss_pred HHHH
Confidence 8864
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=176.78 Aligned_cols=156 Identities=28% Similarity=0.412 Sum_probs=128.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|.+|+|||||+++++.+.+...+.++.+ +.....+...+..+.+.+||+||+..+..++..++..+|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666664 3444456666777899999999999999888999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc--cccH-HHHHHH-HHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKA-KQVTFH-RKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~--~~~~-~~~~~~-~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++++++++.+..|+..+.... .++|+++|+||+|+... .... ...+.. ...+..++++||++|.|+.++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988887654 47999999999998652 2222 122222 24467899999999999999999999
Q ss_pred HHh
Q 030693 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 160 ~~~ 162 (198)
T cd04147 160 RQA 162 (198)
T ss_pred HHh
Confidence 865
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=177.18 Aligned_cols=146 Identities=19% Similarity=0.312 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-----CcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
+||+++|.+++|||||++++..+.+...+.+|.|.+.....+.++ +..+.+.+||++|++++..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888999877766666553 467899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhh--------------------cCCCCEEEEEeCCCCcccc-ccH-----HHHHHH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRV--------------------CENIPIVLCGNKVDVKNRQ-VKA-----KQVTFH 142 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~p~ivv~nK~Dl~~~~-~~~-----~~~~~~ 142 (173)
+|+|||+++++|++.+..|+..+... .+++|+++|+||+|+.++. ... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999998653 1368999999999996532 222 233677
Q ss_pred HHcCCcEEEEccCCCCC
Q 030693 143 RKKNLQYYEISAKSNYN 159 (173)
Q Consensus 143 ~~~~~~~~~~S~~~~~~ 159 (173)
.+.+++.++.+|.++..
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 88999999999986653
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=173.51 Aligned_cols=158 Identities=26% Similarity=0.396 Sum_probs=130.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
.||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887666666664333 234455666788999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-ccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|+++..+++.+..|+..+.... .+.|+++++||+|+.... ... +...++...+.+++++||+++.|+.++++++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999998888876653 478999999999987532 222 334566777889999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 161 ~~~ 163 (180)
T cd04137 161 EIE 163 (180)
T ss_pred HHH
Confidence 764
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=177.15 Aligned_cols=156 Identities=19% Similarity=0.314 Sum_probs=122.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+..||+++|++|+|||||++++..+.+. .+.++.+.+.....+ ....+.+||+||++.++..+..+++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~----~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTI----GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34699999999999999999998877653 456666654433332 3478999999999998888999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH----------------cCCcEEEE
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEI 152 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----------------~~~~~~~~ 152 (173)
+|+|++++++++....|+..+... ..+.|+++++||+|+.+.....+..+.... ....++++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 999999998888877777776543 257999999999999764444444444432 22468999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030693 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|+|+.++|+++.+.+
T Consensus 172 Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EecCCCChHHHHHHHHhhC
Confidence 9999999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=173.56 Aligned_cols=150 Identities=24% Similarity=0.311 Sum_probs=120.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
+|+++|.+|+|||||++++..+ +...+.+|.|.+...... ..+.+.+||+||+++++.++..+++++|++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRL----DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEE----CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999997755 666778888876443332 56889999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHH------HHHHHc--CCcEEEEccCCC------C
Q 030693 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKK--NLQYYEISAKSN------Y 158 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~--~~~~~~~S~~~~------~ 158 (173)
++++.+++.+..|+..+.... .+.|+++|+||+|+.+.....+.. .++.+. .+.++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999998888886542 588999999999997754332222 222222 356788999998 8
Q ss_pred ChHHHHHHHHH
Q 030693 159 NFEKPFLYLAR 169 (173)
Q Consensus 159 ~i~~~~~~i~~ 169 (173)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=173.09 Aligned_cols=151 Identities=24% Similarity=0.399 Sum_probs=117.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCc------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
+|+++|++|+|||||++++..... ...+.++.+.+...... ....+.+||+||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV----GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999765322 23344555555543333 36789999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH-------cCCcEEEEccCCCCC
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KNLQYYEISAKSNYN 159 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~~~ 159 (173)
+++|+|+++++++.....|+..+.+. ..+.|+++++||+|+.+.....+..++... .+.+++++||++|.|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 99999999998888888777776553 258999999999998765433333333322 345799999999999
Q ss_pred hHHHHHHHHH
Q 030693 160 FEKPFLYLAR 169 (173)
Q Consensus 160 i~~~~~~i~~ 169 (173)
+++++++|.+
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999875
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-32 Score=167.91 Aligned_cols=155 Identities=27% Similarity=0.569 Sum_probs=137.7
Q ss_pred EEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECC
Q 030693 18 IVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 96 (173)
++|.+++|||+|+-++..+.+- ....+|.|+++....+..++..+++++|||.|+++|++.+..|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999887666553 345789999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 97 ARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 97 ~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+..||+..+.|+.++.++. ..+.+.+++||||+.. +.+ .++...++..++++|.++||++|.|++-.|-.|++.+.
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 9999999999999998875 4677889999999965 333 44567899999999999999999999999999888664
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=174.31 Aligned_cols=161 Identities=27% Similarity=0.468 Sum_probs=141.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
...+|++++|...+|||+|+-.+..+.|+..+.||.- +.+...+.++ +..+.+.+|||.|++.|..++...++++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3468999999999999999999999999999999996 6666778885 9999999999999999999888889999999
Q ss_pred EEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHHcC-CcEEEEc
Q 030693 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S 153 (173)
+++|++.+++|+.++. +|+.++.+++|++|+++||+|.||.+.. ..++...++++.+ ..|++||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999999976 5999999999999999999999997421 1223446777777 6799999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 030693 154 AKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~ 172 (173)
|++..|++++|+...+.++
T Consensus 161 a~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhCCcHHHHHHHHHHHh
Confidence 9999999999999888764
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=170.10 Aligned_cols=150 Identities=21% Similarity=0.315 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|++++|||||++++..+.+.. ..++.+.+..... ...+.+++||+||++.+...+..+++.++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVETVT----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEEEE----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999987766543 4566665544322 245789999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHHHHHH
Q 030693 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
++++.++.....++..+.+. ..+.|+++|+||+|+.+.....+...... ..+.+++++||++|.|++++|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 99998877766655544332 25799999999999976432222222111 123469999999999999999998
Q ss_pred HH
Q 030693 168 AR 169 (173)
Q Consensus 168 ~~ 169 (173)
++
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 75
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=162.37 Aligned_cols=157 Identities=20% Similarity=0.347 Sum_probs=131.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.++++|+++|..||||||++++|. +...+...||.|.......+ +.+.+.+||.+|+...+..|+.||..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~-~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLL-GEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhc-CCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 448999999999999999999955 55577778999988877776 7789999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhh--hcCCCCEEEEEeCCCCccccccH------HHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKA------KQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
+|+|.+++..+++-...+..+.. .....|+++++||.|+......+ +..+++....+..+.||+.+|+++.+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 99999999888777665555533 23578999999999998533222 22355567788999999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
.++|++++++
T Consensus 169 gidWL~~~l~ 178 (185)
T KOG0073|consen 169 GIDWLCDDLM 178 (185)
T ss_pred HHHHHHHHHH
Confidence 9999999886
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=171.06 Aligned_cols=151 Identities=19% Similarity=0.303 Sum_probs=118.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
+|+++|++|+|||||++++..+.+.. ..++.+.+...... ...+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEe---CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999998877654 46676655443332 355899999999999998899999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHH------HHHcCCcEEEEccCCCCChHHHHHH
Q 030693 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++++.++.....|+..+.+. ..+.|+++|+||+|+.......+.... +...+.+++++||++|+|++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 99999888888877776543 258999999999999653222222211 1223456899999999999999999
Q ss_pred HHH
Q 030693 167 LAR 169 (173)
Q Consensus 167 i~~ 169 (173)
|.+
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=168.82 Aligned_cols=150 Identities=23% Similarity=0.376 Sum_probs=121.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|.+|+|||||++++..+. ...+.++.+.+.....+ ..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999988776 44557777766654443 46789999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHHHHHH
Q 030693 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+++++++.....|+..+... ..+.|+++++||+|+.......+..+.. .....+++++||++|.|+.++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 99999999888877776554 2589999999999997654333333222 2235679999999999999999998
Q ss_pred HH
Q 030693 168 AR 169 (173)
Q Consensus 168 ~~ 169 (173)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 75
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=172.16 Aligned_cols=155 Identities=17% Similarity=0.278 Sum_probs=120.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.++|+++|.+|+|||||++++..+.+. .+.++.+.+...... ..+.+.+||+||++.++..+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAI----GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 44699999999999999999998876654 345555544333222 4578999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH------------cCCcEEEEccCC
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK------------KNLQYYEISAKS 156 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~S~~~ 156 (173)
+|+|+++++++.....++..+.+. ..+.|+++|+||+|+.......+..+.... ....++++||++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 999999999888888777766543 258999999999999764433333322211 234589999999
Q ss_pred CCChHHHHHHHHHH
Q 030693 157 NYNFEKPFLYLARK 170 (173)
Q Consensus 157 ~~~i~~~~~~i~~~ 170 (173)
|.|++++++||.++
T Consensus 170 ~~g~~~~~~wl~~~ 183 (184)
T smart00178 170 RMGYGEGFKWLSQY 183 (184)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999875
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=166.27 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC-------ccccccc------ceeEEEEEEEEEe-----cCcEEEEEEEeCCCccccc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~~~~ 76 (173)
+|+++|.+++|||||+++|+... +...+.+ +.|.+........ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999987632 1112222 2234444333222 5567899999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC---cEEEEc
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS 153 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~S 153 (173)
..+..+++.+|++++|+|++++.+.+....|.... . .++|+++|+||+|+.+........+++...++ .++++|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E--NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence 99999999999999999999876666655554332 2 37899999999998653322222345555555 489999
Q ss_pred cCCCCChHHHHHHHHHHh
Q 030693 154 AKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i 171 (173)
|++|.|++++++++.+.+
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 159 AKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccCCCCHHHHHHHHHhhC
Confidence 999999999999998865
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=161.82 Aligned_cols=159 Identities=23% Similarity=0.340 Sum_probs=135.1
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+.++.+|+++|-.++||||++.+|..+..... .||+|.....+++ .++.|++||.+|+++++.+|.+|+++.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence 456789999999999999999999887777655 9999999988887 68999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHHHHHHHcC-----CcEEEEccCCCCChH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-----LQYYEISAKSNYNFE 161 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~ 161 (173)
+|||+|.++++.+..++..+..+.... .+.|+++++||.|+++.-...+..+...... -.+..++|.+|+|+.
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 999999999999999888777776554 5899999999999998766555544333332 235679999999999
Q ss_pred HHHHHHHHHhh
Q 030693 162 KPFLYLARKLA 172 (173)
Q Consensus 162 ~~~~~i~~~i~ 172 (173)
|.++|+.+.+-
T Consensus 168 egl~wl~~~~~ 178 (181)
T KOG0070|consen 168 EGLDWLSNNLK 178 (181)
T ss_pred HHHHHHHHHHh
Confidence 99999988763
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=174.69 Aligned_cols=138 Identities=22% Similarity=0.403 Sum_probs=117.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-------------CcEEEEEEEeCCCccccc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-------------CGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~ 76 (173)
+...+||+++|..|+|||||+++|..+.+...+.+|+|.++....+.++ +..+.+.+||++|+++|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 4557999999999999999999999998888888999988766555543 246889999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-------------CCCCEEEEEeCCCCcccc--------cc
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNRQ--------VK 135 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~Dl~~~~--------~~ 135 (173)
.++..++++++++|+|||++++++++.+..|+..+.... .++|++||+||+||..+. ..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 999999999999999999999999999999999998752 258999999999996532 23
Q ss_pred HHHHHHHHHcCC
Q 030693 136 AKQVTFHRKKNL 147 (173)
Q Consensus 136 ~~~~~~~~~~~~ 147 (173)
++..+++.++++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 445678887764
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=159.95 Aligned_cols=150 Identities=24% Similarity=0.421 Sum_probs=119.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEEC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 95 (173)
|+++|++|+|||||++++..+.+...+.++.+.+...... ..+.+.+||+||++.++..+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTK----GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEE----CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999888888888887766553322 347899999999999999999999999999999999
Q ss_pred CChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 96 TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++..++.....|+..+... ..+.|+++|+||+|+.+.....+..... .....+++++|++++.|+.++++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 9998888777766665442 2588999999999987643322222211 12346789999999999999999987
Q ss_pred H
Q 030693 169 R 169 (173)
Q Consensus 169 ~ 169 (173)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=163.86 Aligned_cols=155 Identities=17% Similarity=0.316 Sum_probs=117.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.++|+++|++|+|||||++++.+..+. .+.++.|.+...... ....+.+||+||+..+...+..+++.++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQS----DGFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345799999999999999999997765543 346666655544333 357899999999998888888899999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHHc-----CCcEEEEccCCCCChHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
++|+|+++..++.....++..+.+. ..+.|+++++||+|+.+.....+..+..... ...++++||++|+|+++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 9999999988888777766665443 2479999999999987643222222211111 12468999999999999
Q ss_pred HHHHHHH
Q 030693 163 PFLYLAR 169 (173)
Q Consensus 163 ~~~~i~~ 169 (173)
+|+||++
T Consensus 166 ~~~~l~~ 172 (173)
T cd04155 166 GMNWVCK 172 (173)
T ss_pred HHHHHhc
Confidence 9999976
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=160.49 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc---------hhhccC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR---------DGYYIH 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~---------~~~~~~ 85 (173)
+|+++|.+|+|||||++++..+.+... +..+.+..............+++|||||+....... ......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 789999999999999999887665321 111222222222222345799999999974311100 011123
Q ss_pred CCEEEEEEECCChhhh--hcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 86 GQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|++++|+|++++.++ .....|+..+.....+.|+++|+||+|+.+.....+..++....+.+++++||++|.|++++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence 6899999999987653 45556777776655689999999999997644333344555556788999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
++++.+.++
T Consensus 160 ~~~l~~~~~ 168 (168)
T cd01897 160 KNKACELLL 168 (168)
T ss_pred HHHHHHHhC
Confidence 999998764
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-30 Score=166.75 Aligned_cols=161 Identities=32% Similarity=0.580 Sum_probs=147.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.-+|++++|..++||||++.+++.+-|...+..++|+++....+.+....+...+||++|++++..++.+|++++++.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 45999999999999999999999999999999999999988888777788888999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||+.+++.||+....|.+.+...+.++|.++|-||+|+.+... . .+...+++..++.++.+|++...|+..+|.+++.
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999977433 2 3445788889999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
++.
T Consensus 179 K~~ 181 (246)
T KOG4252|consen 179 KLT 181 (246)
T ss_pred HHH
Confidence 763
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=158.57 Aligned_cols=137 Identities=31% Similarity=0.571 Sum_probs=119.5
Q ss_pred CCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc
Q 030693 36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115 (173)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (173)
+.|.+.+.+|.|.++....+.+++..+.+.+|||+|++++..++..+++++|++++|||++++++++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677889999999988888888889999999999999999999999999999999999999999999999999887654
Q ss_pred -CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 116 -ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 116 -~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++.|+++|+||+|+.+ +.. ..+...++..+++.++++||++|.|+.++|++|++.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999965 222 33445777788889999999999999999999998763
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-27 Score=157.31 Aligned_cols=154 Identities=15% Similarity=0.098 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCccc----ccCcchhhcc---CC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEK----FGGLRDGYYI---HG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~----~~~~~~~~~~---~~ 86 (173)
+|+++|.+|+|||||++++....... ....+.+......... .....+.+|||||+.. .+.+...+++ .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v--~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc--cCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 68999999999999999977543211 1111122221111111 1224899999999642 2233444444 59
Q ss_pred CEEEEEEECCCh-hhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHH-HHHHHHH-cCCcEEEEccCCCCCh
Q 030693 87 QCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRK-KNLQYYEISAKSNYNF 160 (173)
Q Consensus 87 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~S~~~~~~i 160 (173)
|++++|+|++++ .+++.+..|...+.... .+.|+++|+||+|+.++....+ ...+... .+.+++++|++++.|+
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 999999999999 78888888888887653 3789999999999976544333 3344444 3788999999999999
Q ss_pred HHHHHHHHHH
Q 030693 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=154.97 Aligned_cols=169 Identities=81% Similarity=1.289 Sum_probs=154.9
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030693 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|.++..+ ...++++++|..|.||||++++.+.+.+...+.+|.|.......+.-+...+.|..|||.|++.+..+..
T Consensus 1 M~~p~~~---~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd 77 (216)
T KOG0096|consen 1 MTSPPQQ---GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD 77 (216)
T ss_pred CCCCccc---cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc
Confidence 4444444 5689999999999999999999999999999999999999988877666679999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.|+-++..+++++|++.+-.+..+..|.+.+.+.+.|+|+++++||.|...+....+...+.+..+++++++|++.+.|.
T Consensus 78 gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 78 GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccc
Confidence 99999999999999999999999999999999999999999999999999988777778888899999999999999999
Q ss_pred HHHHHHHHHHhh
Q 030693 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
..-|-|+++++.
T Consensus 158 ekPFl~LarKl~ 169 (216)
T KOG0096|consen 158 ERPFLWLARKLT 169 (216)
T ss_pred ccchHHHhhhhc
Confidence 999999998864
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=150.54 Aligned_cols=156 Identities=22% Similarity=0.362 Sum_probs=131.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.++.+.++|-.++|||||++....+.+.+...|+.|.....++- ..+.+.+||.||+.+++++|..|++++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tk----gnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEecc----CceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 46889999999999999999988889888889999987766553 77899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHHHHHHH-----cCCcEEEEccCCCCChHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----KNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+|+.+++.+...+..+..+.... ..+|+++++||.|+++.-.......-... ..+..|.+||++..|++.+.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 999999998888887666665543 58999999999999987655544432222 23457999999999999999
Q ss_pred HHHHHHh
Q 030693 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+|+.++.
T Consensus 175 ~Wli~hs 181 (186)
T KOG0075|consen 175 DWLIEHS 181 (186)
T ss_pred HHHHHHh
Confidence 9998863
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=150.99 Aligned_cols=156 Identities=27% Similarity=0.469 Sum_probs=123.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999988887666666766666655566666668999999999999988898889999999999
Q ss_pred EECCCh-hhhhcHH-HHHHHHhhhcC-CCCEEEEEeCCCCccccccHHHH-HHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 93 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|.... .++.... .|...+..... +.|+++++||+|+.......... .+......+++++||+++.|+.+++++|.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 999877 5665554 56666665544 88999999999997754333333 33344467899999999999999999864
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=152.48 Aligned_cols=149 Identities=15% Similarity=0.056 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC---CcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.|+++|.+|+|||||+++|... .+.....++...+.......... ...+.+|||||++++......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999998743 22222222222222222233321 4689999999999887766777889999999
Q ss_pred EEECCC---hhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHHHHH---cCCcEEEEccCCCCChH
Q 030693 92 MFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNFE 161 (173)
Q Consensus 92 v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~---~~~~~~~~S~~~~~~i~ 161 (173)
|+|+++ +++.+.+ ..+... ...|+++++||+|+.+... ..+..+.... .+.+++++|++++.|++
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence 999987 3332222 222222 2349999999999976421 1222333333 46789999999999999
Q ss_pred HHHHHHHH
Q 030693 162 KPFLYLAR 169 (173)
Q Consensus 162 ~~~~~i~~ 169 (173)
++++.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=157.02 Aligned_cols=157 Identities=15% Similarity=0.071 Sum_probs=108.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--c------chhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--L------RDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--~------~~~~ 82 (173)
...++|+++|++|+|||||++++..........+....+.....+..++ ...+.+|||||...... . ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999887653322111111122222222322 23799999999732111 1 1112
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
+..+|++++|+|++++.+......|...+.... .+.|+++|+||+|+.+..... ..+...+.+++++||+++.|+.
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGLD 194 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCHH
Confidence 568999999999999888777766666665543 468999999999997643222 3445567789999999999999
Q ss_pred HHHHHHHHHh
Q 030693 162 KPFLYLARKL 171 (173)
Q Consensus 162 ~~~~~i~~~i 171 (173)
+++++|.+.+
T Consensus 195 ~l~~~L~~~~ 204 (204)
T cd01878 195 ELLEAIEELL 204 (204)
T ss_pred HHHHHHHhhC
Confidence 9999998754
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=150.29 Aligned_cols=133 Identities=21% Similarity=0.256 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc-----cccCcchhhccCCCEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCA 89 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~~~~ 89 (173)
||+++|++|+|||||++++..+.+ .+.++.+.+. . -.+|||||+. .++.+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999876654 2233332221 1 1689999972 2333333 47899999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-HHHHHHHHcCC-cEEEEccCCCCChHHHHHHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i 167 (173)
++|+|++++.++.. ..|...+ ..|+++|+||+|+.++.... +..+++...+. +++++||++|.|++++|+++
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999988765 2343322 34999999999997643333 33456666665 79999999999999999987
Q ss_pred H
Q 030693 168 A 168 (173)
Q Consensus 168 ~ 168 (173)
.
T Consensus 141 ~ 141 (142)
T TIGR02528 141 N 141 (142)
T ss_pred h
Confidence 5
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=141.27 Aligned_cols=156 Identities=21% Similarity=0.313 Sum_probs=129.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.++++|+.+|-.++||||++..|..+. +....||.|.....+++ +++.|.+||.+|+++.+.+|++||.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 458999999999999999999976665 44568999999888887 8899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHHc-----CCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~~ 163 (173)
||+|..++...++++..+..+... ..+.|+++.+||.|+++...+.+........ .--+.++++.+|+|+.|-
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 999999998888887755554332 2588999999999999977766665433322 223578999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
|.|+.+.+
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 99998765
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=154.77 Aligned_cols=161 Identities=35% Similarity=0.535 Sum_probs=130.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||+++|..+.+...+.++.+..............+.+.+|||+|+++++.++..|+.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34999999999999999999999999998888898877777666665558899999999999999999999999999999
Q ss_pred EEECCChh-hhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccccc-------------HHH-HHHHHH---cCCcEEEE
Q 030693 92 MFDVTARL-TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-------------AKQ-VTFHRK---KNLQYYEI 152 (173)
Q Consensus 92 v~d~~~~~-s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~-------------~~~-~~~~~~---~~~~~~~~ 152 (173)
|+|..+.. +.+....|...+.... .+.|+++++||+|+..+... ... ...... ....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 99999955 4445556988888876 47999999999999875321 111 111111 23348999
Q ss_pred ccC--CCCChHHHHHHHHHHhh
Q 030693 153 SAK--SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 153 S~~--~~~~i~~~~~~i~~~i~ 172 (173)
|++ .+.++.++|..+.+.+.
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHH
Confidence 999 99999999999887663
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-26 Score=155.57 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CCccccc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 79 (173)
.+|+++|.+++|||||+++|+. +.+...+ ..+.|.+.......+......+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999886 4443322 2234555555555555567899999999999999999
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc---HHHHHHHH-------HcCCcE
Q 030693 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNLQY 149 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~-------~~~~~~ 149 (173)
..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+.+.... .+..+++. ..++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV 159 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence 99999999999999998742 1222333444333 37899999999999653321 22223331 236789
Q ss_pred EEEccCCCCChHH
Q 030693 150 YEISAKSNYNFEK 162 (173)
Q Consensus 150 ~~~S~~~~~~i~~ 162 (173)
+++||++|.|+.+
T Consensus 160 v~~Sa~~g~~~~~ 172 (194)
T cd01891 160 LYASAKNGWASLN 172 (194)
T ss_pred EEeehhccccccc
Confidence 9999999977643
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=148.89 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=106.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
.|+++|.+|+|||||+++|..+.+.....+....+......... .....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999988777654433322222222222222 14678999999999998888888899999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHHHHH------HcCCcEEEEccCCCCChHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHR------KKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~------~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+++....+. ...+..+.. .++|+++|+||+|+....... ....... ...++++++|+++|.|+.+++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 9997532111 112222333 388999999999987532211 1111111 123679999999999999999
Q ss_pred HHHHHHh
Q 030693 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+++.+..
T Consensus 159 ~~l~~~~ 165 (168)
T cd01887 159 EAILLLA 165 (168)
T ss_pred HHHHHhh
Confidence 9998754
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=162.47 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCccc----ccCcchh---hccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEK----FGGLRDG---YYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~----~~~~~~~---~~~~ 85 (173)
..|+++|.||||||||++++...+. . .....++|.......+. .....+.+||+||..+ ...+... .+..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-K-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-c-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 3589999999999999999765432 1 12222334433333222 2445799999999642 1223333 3457
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccc-cHH-HHHHHHHcCCcEEEEccCCCCCh
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
++++++|+|+++.++++.+..|..++..+. .++|+++|+||+|+.+... ..+ ...++...+.+++++||++++|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 899999999998878888888888887764 3789999999999975432 222 22344556688999999999999
Q ss_pred HHHHHHHHHHhh
Q 030693 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
++++++|.+.+.
T Consensus 317 ~eL~~~L~~~l~ 328 (335)
T PRK12299 317 DELLRALWELLE 328 (335)
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=155.43 Aligned_cols=151 Identities=21% Similarity=0.193 Sum_probs=101.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC-----------cccccCcc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLR 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~ 79 (173)
...++|+++|.+|+|||||++++.++.+.... ..+++.....+... .+.+||||| +++++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~--~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGK--RPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 34689999999999999999998876654333 33555554444332 689999999 45565555
Q ss_pred hhhcc----CCCEEEEEEECCChhhhh-c--------H-HHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHc
Q 030693 80 DGYYI----HGQCAIIMFDVTARLTYK-N--------V-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK 145 (173)
Q Consensus 80 ~~~~~----~~~~~i~v~d~~~~~s~~-~--------~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 145 (173)
..++. .++++++|+|.++...+. . . ......+.. .++|+++|+||+|+.+.. .....+++...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-DEVLDEIAERL 157 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence 55554 357888888876532210 0 0 111222222 389999999999996543 22233444444
Q ss_pred CC---------cEEEEccCCCCChHHHHHHHHHHh
Q 030693 146 NL---------QYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 146 ~~---------~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
++ +++++||++| |+++++++|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 44 5799999999 9999999999865
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-25 Score=145.74 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=105.4
Q ss_pred EEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc------chhhcc--CCCEE
Q 030693 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYYI--HGQCA 89 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~~--~~~~~ 89 (173)
++|.+|+|||||++++.+........+..+.+.....+..+ ...+.+|||||+..+... +..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 57999999999999987665333223332333333334443 357999999998876643 455664 89999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++|+|+.+++... .+...+... ++|+++|+||+|+.+.. ...+...++...+.+++++|++++.|+.++++++.
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc--CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 9999999865422 333344433 78999999999997643 23334466677789999999999999999999998
Q ss_pred HHh
Q 030693 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+..
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 754
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=157.88 Aligned_cols=152 Identities=16% Similarity=0.093 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cchhhccCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~ 86 (173)
+|+++|.+|+|||||+|+|++.+... ..+..++|..............+.+|||||...... ....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999988766432 233344444433332223345789999999754321 123457899
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-HHHHHHHHcCC-cEEEEccCCCCChHHHH
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~-~~~~~S~~~~~~i~~~~ 164 (173)
|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+..... ....++...+. .++++||++|.|+++++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 9999999999876543 334444444 378999999999997533222 22233333443 78999999999999999
Q ss_pred HHHHHHh
Q 030693 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+++.+.+
T Consensus 157 ~~l~~~l 163 (270)
T TIGR00436 157 AFIEVHL 163 (270)
T ss_pred HHHHHhC
Confidence 9998765
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=146.06 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------cchhhc--cC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY--IH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~ 85 (173)
++|+++|.||+|||||+|+|.+.+. ......|+|.......+......+.++|+||.-.... .+..++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~--~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ--KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE--EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc--eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999776663 2345566666666555443458899999999533332 233343 57
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
.|++++|+|+++.+.-.. +..++.+. ++|+++++||+|...+.. ..+...+.+..+++++++||++++|+++++
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 999999999987653222 33444444 899999999999877443 335667888899999999999999999999
Q ss_pred HHH
Q 030693 165 LYL 167 (173)
Q Consensus 165 ~~i 167 (173)
++|
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=143.24 Aligned_cols=150 Identities=39% Similarity=0.667 Sum_probs=119.3
Q ss_pred EEcCCCCCHHHHHHHHhhCCc-ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECC
Q 030693 18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 96 (173)
++|++|+|||||++++..... .....++. .+..............+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999887766 34444554 5666666666667889999999999888888888999999999999999
Q ss_pred ChhhhhcHHHHH--HHHhhhcCCCCEEEEEeCCCCccccccHHH---HHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 97 ARLTYKNVPTWH--RDLCRVCENIPIVLCGNKVDVKNRQVKAKQ---VTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 97 ~~~s~~~~~~~~--~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++.+...+..|. ........+.|+++++||+|+......... .........+++++|+..+.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888887762 222333468999999999999775444332 344555678999999999999999999975
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=160.55 Aligned_cols=155 Identities=17% Similarity=0.282 Sum_probs=106.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc-ccCcch-------hh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRD-------GY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~-------~~ 82 (173)
.+.++|+++|.+|+|||||+++|++..+. ...+..++|.......+......+.+|||||... +..+.. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 34579999999999999999998876653 2234444444333222222445789999999843 332222 23
Q ss_pred ccCCCEEEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcC--CcEEEEccCCCCC
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYN 159 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~ 159 (173)
+..+|++++|+|..+ ++.... .|+..+... +.|.++|+||+|+.+.. ..+..+.+.... ..++++||++|.|
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 678999999999765 334443 355555443 67888999999997542 233444444443 5799999999999
Q ss_pred hHHHHHHHHHHh
Q 030693 160 FEKPFLYLARKL 171 (173)
Q Consensus 160 i~~~~~~i~~~i 171 (173)
++++++++.+.+
T Consensus 204 v~eL~~~L~~~l 215 (339)
T PRK15494 204 IDGLLEYITSKA 215 (339)
T ss_pred HHHHHHHHHHhC
Confidence 999999998765
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=169.38 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=115.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC-------cccccc------cceeEEEEEEEEEe-----cCcEEEEEEEeCCCccc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYE------PTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~~ 74 (173)
-.+++++|+.++|||||+++|+... +...+. ...|.++......+ ++..+.+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999987542 111221 12355554433322 45668999999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC---cEEE
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYE 151 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~ 151 (173)
|...+..++..+|++++|+|++++.+.+....|...+. .++|+++|+||+|+.+........++....++ .+++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~ 159 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAIL 159 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEE
Confidence 99999999999999999999998776666665554432 37899999999999754322222344444554 4899
Q ss_pred EccCCCCChHHHHHHHHHHh
Q 030693 152 ISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i 171 (173)
+||++|.|+.++|+++.+.+
T Consensus 160 vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 160 ASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred eeccCCCCHHHHHHHHHHhC
Confidence 99999999999999998765
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=166.86 Aligned_cols=153 Identities=22% Similarity=0.219 Sum_probs=107.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc--------ccCcchhhcc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYI 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~ 84 (173)
..+|+++|.+|+|||||+++|+.+... ....+.|++...........+..+.+|||||.+. +...+..+++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~-~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREA-VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcc-cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 368999999999999999998866532 2344556555544444333445789999999763 2233556788
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHH
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 163 (173)
.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+..... +..++. ..++ ..+++||++|.|++++
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHGRGVGDL 190 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCCCCcHHH
Confidence 9999999999998755432 234444443 3899999999999865321 122222 2232 4579999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
++++.+.+.
T Consensus 191 ~~~i~~~l~ 199 (472)
T PRK03003 191 LDAVLAALP 199 (472)
T ss_pred HHHHHhhcc
Confidence 999988753
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=142.19 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhhccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~~~ 85 (173)
++|+++|++|+|||||++++....... ..+..+++..............+.+|||||...+... ...++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI-VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe-ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 589999999999999999987665321 1222333333222222234568899999997665432 2345678
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|++++++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence 999999999998776555443322 348999999999999764433 3344567899999999999999999
Q ss_pred HHHHHh
Q 030693 166 YLARKL 171 (173)
Q Consensus 166 ~i~~~i 171 (173)
+|.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=163.23 Aligned_cols=151 Identities=23% Similarity=0.250 Sum_probs=109.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhhc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 83 (173)
..+||+++|.+|+|||||+|+|+..... ...+..|++.......+.-.+..+.+|||||...+... ...++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~a-ivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRA-IVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 4589999999999999999998765421 12233444554444333334567899999998665432 23577
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+.+|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+.+. +...++...+.+++++|+++ .|++++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~~ 351 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKAL 351 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHHH
Confidence 899999999999988776554 5555543 37899999999999654 12344556678899999998 699999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
++.+.+.+.
T Consensus 352 ~~~L~~~i~ 360 (442)
T TIGR00450 352 VDLLTQKIN 360 (442)
T ss_pred HHHHHHHHH
Confidence 998887653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=138.08 Aligned_cols=114 Identities=28% Similarity=0.536 Sum_probs=88.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcc--cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
||+|+|.+|+|||||+++|...... ....++.+.+..............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999887765 12233333344434455555666799999999999888888889999999999
Q ss_pred EECCChhhhhcHHH---HHHHHhhhcCCCCEEEEEeCCC
Q 030693 93 FDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 93 ~d~~~~~s~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 128 (173)
||++++++++.+.. |+..+....++.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999988754 5666666667899999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=142.46 Aligned_cols=148 Identities=21% Similarity=0.150 Sum_probs=100.7
Q ss_pred EEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cchhhccCCCE
Q 030693 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQC 88 (173)
Q Consensus 17 ~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~~~ 88 (173)
+++|.+|+|||||++++...... ......+++..............+.+|||||+..+.. .+...++.+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA-IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE-eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 47899999999999998765421 1122223333333323333457899999999887544 33456788999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHHHHHH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i 167 (173)
+++|+|..++.+.... .....+... +.|+++|+||+|+.+.... .......+. +++++|++++.|++++++++
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 9999999875433322 223333333 6899999999999765332 222333454 78999999999999999999
Q ss_pred HHHh
Q 030693 168 ARKL 171 (173)
Q Consensus 168 ~~~i 171 (173)
.+.+
T Consensus 154 ~~~~ 157 (157)
T cd01894 154 LELL 157 (157)
T ss_pred HhhC
Confidence 8753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-24 Score=146.63 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC----Cccccc-----ccceeEEEEEEEEE----------ecCcEEEEEEEeCCCccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG----EFEKKY-----EPTIGVEVHPLDFF----------TNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~~~D~~G~~~ 74 (173)
++|+++|++++|||||+++|+.. .+.... ..|.+.......+. .....+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999998752 111111 12333333333332 123467899999999865
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----HHHHHHH-------
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHR------- 143 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~------- 143 (173)
+........+.+|++++|+|+++.........+. +... .+.|+++++||+|+....... +..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4333333455689999999998754333322221 1122 267999999999987432211 1111111
Q ss_pred HcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 144 KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 144 ~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
..+.+++++||++|.|+.++++++.++++
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23578999999999999999999998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=154.44 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccc----cCcchhh---ccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF----GGLRDGY---YIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~----~~~~~~~---~~~ 85 (173)
..|+++|.+|+|||||++++....... .....+|.......+. .....+++||+||.... ..+...+ +..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~v--a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 469999999999999999977654211 1111122221111111 13368899999997432 2333344 346
Q ss_pred CCEEEEEEECCCh---hhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHHH-HHHHHHcCCcEEEEccCCCC
Q 030693 86 GQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 86 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~S~~~~~ 158 (173)
++++++|+|+++. ++++.+..|..++..+. .+.|+++|+||+|+.+.....+. ..+....+.+++++||++++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 9999999999976 56677777777776553 47899999999999765332222 24555567889999999999
Q ss_pred ChHHHHHHHHHHh
Q 030693 159 NFEKPFLYLARKL 171 (173)
Q Consensus 159 ~i~~~~~~i~~~i 171 (173)
|++++++++.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=156.75 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccc--cccceeEEEEEEEEEecCcEEEEEEEeCCCcc---------cccCcchh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDG 81 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~ 81 (173)
.++|+++|.+|+|||||+|+|.+...... ..+|... ....+... ....+.+|||+|.. .++.. ..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~--~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~t-le 264 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDP--TTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRAT-LE 264 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCC--EEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 48999999999999999999887653211 1223222 22233332 23589999999972 12221 12
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.+.++|++++|+|++++.+.+....|...+.... .+.|+++|+||+|+.+... .... .....+++++||++|.|+
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~---v~~~-~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR---IERL-EEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh---HHHH-HhCCCCEEEEEccCCCCH
Confidence 4678999999999999887777666655555442 4789999999999965321 1111 122346899999999999
Q ss_pred HHHHHHHHHH
Q 030693 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
++++++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=144.98 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=103.2
Q ss_pred EEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCc-EEEEEEEeCCCccc----ccCcc---hhhccCCCEE
Q 030693 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLR---DGYYIHGQCA 89 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~----~~~~~---~~~~~~~~~~ 89 (173)
++|++|+|||||++++.+..... ....+++........... ...+.+||+||... .+.++ ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV--ANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccc--cCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 57999999999999987765411 111122222211112123 56789999999632 22232 2346789999
Q ss_pred EEEEECCCh------hhhhcHHHHHHHHhhhc--------CCCCEEEEEeCCCCccccccHHH--HHHHHHcCCcEEEEc
Q 030693 90 IIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~S 153 (173)
++|+|++++ .++.....|...+.... .+.|+++|+||+|+.......+. .......+..++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999988 46777766766665432 37899999999999764433322 233444567899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 030693 154 AKSNYNFEKPFLYLARK 170 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~ 170 (173)
++++.|+.++++++++.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=162.97 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=107.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhhc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 83 (173)
..++|+++|.+|+|||||+|+|+..... ...+..+++.......+.-.+..+.+|||||.+.+... ...++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERA-IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3489999999999999999998765431 11233344444333333324567899999998765432 23467
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|++++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence 88999999999998876665433332 4588999999999997543221 344578999999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
++++.+.+
T Consensus 362 ~~~L~~~l 369 (449)
T PRK05291 362 REAIKELA 369 (449)
T ss_pred HHHHHHHH
Confidence 99998765
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-25 Score=142.34 Aligned_cols=157 Identities=24% Similarity=0.391 Sum_probs=125.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC-------CcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhcc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG-------EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 84 (173)
..+.++++|..++|||||+.+.... -.+..-.+|.|.....+.+ ....+.+||.+|++..+++|..||.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHHHH
Confidence 4688999999999999999885432 1123445677776666555 3678999999999999999999999
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH------HcCCcEEEEccCC
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKS 156 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~S~~~ 156 (173)
.++++++++|+++++.++.....++.+... ..+.|+++.+||.|+.+.....+...... +..+.+.++||.+
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~ 171 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALT 171 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhh
Confidence 999999999999999888877766665443 36999999999999998776665543332 2347799999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030693 157 NYNFEKPFLYLARKLA 172 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i~ 172 (173)
|+|+++..+|+...+.
T Consensus 172 gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 172 GEGVKEGIEWLVKKLE 187 (197)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999988764
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=143.36 Aligned_cols=155 Identities=19% Similarity=0.126 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccc--------------eeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--------------IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
+|+++|.+|+|||||++++............ .+.+..............+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999998776554332111 11222222222233457899999999998888888
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc----HHHHHHHHH------------
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRK------------ 144 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~------------ 144 (173)
.+++.+|++++|+|+.++.+... ..++..+.. .+.|+++++||+|+...... ....+....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR 157 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence 89999999999999987654332 233334433 48999999999999762221 112222222
Q ss_pred --cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 145 --KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 145 --~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
...+++++||++|.|+.++++++.+.+.
T Consensus 158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 158 NGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3577899999999999999999988753
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=158.22 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=108.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc-----------
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------- 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----------- 79 (173)
...++|+++|.+|+|||||+++++..... ...+..|++.......+...+..+.+|||||..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERV-IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCee-ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 34589999999999999999998765432 123344555554444333334578999999986655432
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc-cccccHHHH-HHHHH----cCCcEEEEc
Q 030693 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRK----KNLQYYEIS 153 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~-~~~~~----~~~~~~~~S 153 (173)
..+++.+|++++|+|++++.+.++.. ++..+.. .+.|+++|+||+|+. +.....+.. ..... ..++++++|
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 23578999999999999876655542 3333333 378999999999997 222112222 11111 247899999
Q ss_pred cCCCCChHHHHHHHHHHh
Q 030693 154 AKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i 171 (173)
|++|.|+.++|+++.+..
T Consensus 326 A~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987643
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=155.34 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=107.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC-cEEEEEEEeCCCccc----ccCcchhhc---cCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEK----FGGLRDGYY---IHG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~----~~~~~~~~~---~~~ 86 (173)
.|+++|.||||||||++++...+.. ......+|..+....+.. ....+.+||+||... ...+...|+ ..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 7999999999999999997755422 122223333333222221 256799999999643 223344444 458
Q ss_pred CEEEEEEECCCh---hhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
+++++|+|+++. +.++....|...+..+. .++|+++|+||+|+... ......+....+.+++++||++++|+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 999999999864 56666667777776653 37899999999998542 22234455555678999999999999
Q ss_pred HHHHHHHHHHh
Q 030693 161 EKPFLYLARKL 171 (173)
Q Consensus 161 ~~~~~~i~~~i 171 (173)
+++++++.+.+
T Consensus 316 ~eL~~~L~~~l 326 (424)
T PRK12297 316 DELLYAVAELL 326 (424)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=161.32 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=106.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc----------cCc-ch
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGL-RD 80 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~-~~ 80 (173)
..++|+++|.+|+|||||+++|+..... ...+..|++.......+...+..+.+|||||..+. ..+ ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~-~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS-VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 4589999999999999999998876542 12334444444333222223346789999996422 111 12
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH----HH-HHHHHcCCcEEEEccC
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QV-TFHRKKNLQYYEISAK 155 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~-~~~~~~~~~~~~~S~~ 155 (173)
.+++.+|++++|+|++++.+.+... ++..+.. .+.|+++|+||+|+.+...... .. .+.....++++++||+
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence 3568999999999999987776653 3444433 3899999999999975321111 11 1222234789999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030693 156 SNYNFEKPFLYLARKL 171 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i 171 (173)
+|.|++++|+.+.+.+
T Consensus 366 ~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 366 TGRAVDKLVPALETAL 381 (472)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998754
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=135.54 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=103.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cchhhc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~ 83 (173)
...+|+++|++|+|||||++++.+...... .+....+..............+.+||+||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIV-SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEec-cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 357899999999999999999876543222 11122222222333334557899999999754432 233457
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHHHH-HHHHHc-CCcEEEEccCCCCCh
Q 030693 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNF 160 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~-~~~~~~-~~~~~~~S~~~~~~i 160 (173)
..+|++++|+|++++.+ +....+...+... +.|+++++||+|+.. .....+.. .+.... ..+++++|++++.|+
T Consensus 81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HhCCEEEEEEECCCccC-chHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 88999999999998721 1222333444333 689999999999974 33222222 333333 368999999999999
Q ss_pred HHHHHHHHHH
Q 030693 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999765
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=158.43 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=106.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+..+|+++|++++|||||++++....+.....+....+.....+...+. ..+.+|||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 345689999999999999999998876665433322222222223333222 2789999999999999998889999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHc---------CCcEEEEccCCCCCh
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---------NLQYYEISAKSNYNF 160 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~S~~~~~~i 160 (173)
++|+|+++...-+... .+..... .++|+++++||+|+.+... .+..+.+... ..+++++||++|+|+
T Consensus 163 ILVVda~dgv~~qT~e-~i~~~~~--~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 163 VLVVAADDGVMPQTIE-AISHAKA--ANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEEEECCCCCCHhHHH-HHHHHHH--cCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9999998753222221 1222222 3899999999999965321 1222222222 246999999999999
Q ss_pred HHHHHHHHH
Q 030693 161 EKPFLYLAR 169 (173)
Q Consensus 161 ~~~~~~i~~ 169 (173)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=136.62 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=100.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc-----------chh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDG 81 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~~~ 81 (173)
.++|+++|.+|+|||||++++........ ....+++..............+.+||+||....... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 57899999999999999999876543211 112222322222222223446889999997543211 123
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--ccHHHH-HHHHHc----CCcEEEEcc
Q 030693 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV-TFHRKK----NLQYYEISA 154 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~-~~~~~~----~~~~~~~S~ 154 (173)
.+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+.. ...... ...... ..+++++||
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 46789999999999988664443 23333332 378999999999997652 222212 222222 368999999
Q ss_pred CCCCChHHHHHHHHHH
Q 030693 155 KSNYNFEKPFLYLARK 170 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~ 170 (173)
+++.|+.++++++.+.
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999998763
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=139.96 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=105.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc----------cccCcch
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLRD 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~ 80 (173)
....+|+++|.+|+|||||+++++...+...+.++.+.+........ ...+.+|||||.. .+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 35689999999999999999998876655555666665554333222 3679999999953 2223334
Q ss_pred hhccCC---CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH----HHHHHHHcCCcEEEEc
Q 030693 81 GYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYEIS 153 (173)
Q Consensus 81 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~S 153 (173)
.+++.+ +++++++|.+.+.+.... .....+.. .+.|+++++||+|+.+...... ...........++++|
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~S 175 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFS 175 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 455543 678888998765432221 11222222 3789999999999865322221 2233333367899999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 030693 154 AKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~ 172 (173)
++++.|++++++.|.+.+.
T Consensus 176 a~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 176 SLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCCCCHHHHHHHHHHHhc
Confidence 9999999999999987654
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-23 Score=130.98 Aligned_cols=162 Identities=25% Similarity=0.396 Sum_probs=139.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+.-.+||.++|.+..|||||+-.++++.+.+.+..+.|.++...++.+.+..+.|.+||.+|++++..+..-...++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 34469999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccccc-------cHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV-------KAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
++++|++.++.+..+..|+++-+..+. -+| ++|++|-|+--+.. .......++-.+.+.+.+|+..+.|++
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 999999999999999999999887753 344 56799999643222 222335666678999999999999999
Q ss_pred HHHHHHHHHhh
Q 030693 162 KPFLYLARKLA 172 (173)
Q Consensus 162 ~~~~~i~~~i~ 172 (173)
.+|.-+.-+++
T Consensus 176 KIFK~vlAklF 186 (205)
T KOG1673|consen 176 KIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHHh
Confidence 99998877765
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=136.71 Aligned_cols=138 Identities=17% Similarity=0.094 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc----hhhccCCCEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI 90 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----~~~~~~~~~~i 90 (173)
+|+++|.+|+|||||++++. +.+.. ...+.+. .+... .+||+||.......+ ...+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~-~~~~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ-GNYTL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc-CCCcc-CccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999955 43321 1222221 11212 269999973222211 22368999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC--cEEEEccCCCCChHHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|+|+++..++.. .|+..+ ..+.|+++++||+|+.+.. .....+++...+. +++++||++++|++++|+++.
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 9999998876533 333332 2377999999999996532 2334456666664 899999999999999999998
Q ss_pred HHh
Q 030693 169 RKL 171 (173)
Q Consensus 169 ~~i 171 (173)
+.+
T Consensus 144 ~~~ 146 (158)
T PRK15467 144 SLT 146 (158)
T ss_pred Hhc
Confidence 754
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=131.00 Aligned_cols=157 Identities=20% Similarity=0.319 Sum_probs=126.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+++||+++|-.++|||||+++ +.+..+....||.|.....+.. ..++++.+||++|+...+..|..||.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccceE
Confidence 35789999999999999999999 6677777788999888776665 2668999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~ 162 (173)
|||+|.+++..|+++...+-++.+. ...+|+++..||.|+.-....++...-+ +.....+-+||+.+++|+..
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence 9999999998888887766666543 3589999999999986544333332211 12223467899999999999
Q ss_pred HHHHHHHH
Q 030693 163 PFLYLARK 170 (173)
Q Consensus 163 ~~~~i~~~ 170 (173)
-.+|+++.
T Consensus 170 g~~wv~sn 177 (185)
T KOG0074|consen 170 GSDWVQSN 177 (185)
T ss_pred cchhhhcC
Confidence 99988764
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-23 Score=139.21 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=98.0
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc----------cc
Q 030693 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FG 76 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~ 76 (173)
+..+....+|+++|.+|+|||||++++....+...+.++.+.+.....+..+. .+.+|||||... +.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 33445678999999999999999999887654444455666555443333332 689999999532 22
Q ss_pred CcchhhccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHHHHHcC--C
Q 030693 77 GLRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--L 147 (173)
Q Consensus 77 ~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~--~ 147 (173)
.....+++. ++++++|+|++.+-+.... .++..+... +.|+++++||+|+..... ..+..+.+...+ .
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 223345543 5799999999875443333 223333333 789999999999875321 122233444432 4
Q ss_pred cEEEEccCCCCChH
Q 030693 148 QYYEISAKSNYNFE 161 (173)
Q Consensus 148 ~~~~~S~~~~~~i~ 161 (173)
.++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=142.41 Aligned_cols=157 Identities=19% Similarity=0.183 Sum_probs=107.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCc--cc--------------ccccceeEEEEEEEEEec--CcEEEEEEEeCCCcc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EK--------------KYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQE 73 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~ 73 (173)
+.++|+++|+.++|||||+++|+.... .. ......+.+......... .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 468999999999999999999874331 11 000111222222222222 567899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH----HHHHHc----
Q 030693 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRKK---- 145 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~~---- 145 (173)
.|.......+..+|++++|+|+.++...+. ...+..+... ++|+++|+||+|+.......... .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 988888888999999999999987643222 2333444443 88999999999998433222222 232222
Q ss_pred --CCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 146 --NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 146 --~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.++++++||++|.|+.++++.+.+.+
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999998865
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=153.95 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc----cCcc---hhhccCC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLR---DGYYIHG 86 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~---~~~~~~~ 86 (173)
..|+++|.||||||||+++|...+.. .....++|.......+......|++||+||.... ..+. ...+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 47999999999999999997755432 1233344444444333334568999999995321 1121 2235679
Q ss_pred CEEEEEEECCCh----hhhhcHHHHHHHHhhh------------cCCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcE
Q 030693 87 QCAIIMFDVTAR----LTYKNVPTWHRDLCRV------------CENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQY 149 (173)
Q Consensus 87 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~~------------~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~ 149 (173)
+++++|+|+++. ..+..+..+..++..+ ..++|+++|+||+|+.+..... .........+.++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV 317 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence 999999999853 2344444444444333 2378999999999997543222 2223334557889
Q ss_pred EEEccCCCCChHHHHHHHHHHh
Q 030693 150 YEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 150 ~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+++||++++|+++++++|.+.+
T Consensus 318 f~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 318 FEVSAASREGLRELSFALAELV 339 (500)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=132.25 Aligned_cols=155 Identities=22% Similarity=0.354 Sum_probs=124.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.+.+|+++|-.|+||+|+..++..+.. ....|++|.....+++ ++.++++||.+|+.+.+..|++|+.+.+++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 679999999999999999998655554 3457888877776665 88999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHH-----HHHHcCCcEEEEccCCCCChHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+|.+|+.........+-.+.+. ..+..+++++||.|...+....+... ..+..-.++|+.||.+|+|+++.+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 99999988766665544433332 24677889999999988766555442 223344789999999999999999
Q ss_pred HHHHHHh
Q 030693 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+|+.+.+
T Consensus 172 DWL~~~l 178 (182)
T KOG0072|consen 172 DWLQRPL 178 (182)
T ss_pred HHHHHHH
Confidence 9998865
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=160.45 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=116.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc----------chh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDG 81 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------~~~ 81 (173)
+.++|+++|.+|+|||||+|++.+... ......|+|.......+......+.+||+||..++... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 457999999999999999999875543 33556778887777666667789999999998766432 122
Q ss_pred hc--cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHHHHHHHHHcCCcEEEEccCCCC
Q 030693 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (173)
++ ..+|++++|+|+++.+... .+..++.+. ++|+++++||+|+.+ +....+..++.+..+++++++|+++++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~ 154 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNL---YLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGR 154 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhH---HHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCC
Confidence 32 3789999999999865432 233444443 899999999999875 344445567778889999999999999
Q ss_pred ChHHHHHHHHHH
Q 030693 159 NFEKPFLYLARK 170 (173)
Q Consensus 159 ~i~~~~~~i~~~ 170 (173)
|++++++.+.+.
T Consensus 155 GIdeL~~~I~~~ 166 (772)
T PRK09554 155 GIEALKLAIDRH 166 (772)
T ss_pred CHHHHHHHHHHh
Confidence 999999988653
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=139.92 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=76.5
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----H
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----K 137 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~ 137 (173)
..+.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+..... +
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~ 161 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQ 161 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHH
Confidence 67899999999988777777788899999999999742111112222222222 234799999999997532211 1
Q ss_pred HHHHHHH---cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 138 ~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
..+++.. .+.+++++||++|+|++++++++.+.+.
T Consensus 162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 2233332 2578999999999999999999988764
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=159.36 Aligned_cols=156 Identities=14% Similarity=0.175 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC--Cccc-----cc------ccceeEEEEEEEEEe-----cCcEEEEEEEeCCCccc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEK-----KY------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~--~~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~~ 74 (173)
..+++++|+.++|||||+++|+.. .... .+ ....|.+.......+ ++..+.+.+|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 358999999999999999998752 1111 00 112344443322222 45578999999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCc---EEE
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---YYE 151 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 151 (173)
|...+..++..+|++++|+|++++...+....|.... . .+.|+++|+||+|+.+........++....++. +++
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~--~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~ 163 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E--NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVL 163 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H--CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEE
Confidence 9988999999999999999999876555554554332 2 388999999999997543322223444444543 899
Q ss_pred EccCCCCChHHHHHHHHHHh
Q 030693 152 ISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i 171 (173)
+||++|.|+.+++++|.+.+
T Consensus 164 iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 164 VSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred EecCCCCCHHHHHHHHHHhC
Confidence 99999999999999998765
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=151.05 Aligned_cols=154 Identities=16% Similarity=0.096 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc--cCcchh------hccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRDG------YYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~~~------~~~~ 85 (173)
.+|+++|.+|+|||||+|+|..........+....+.....+...+ ...+.+|||+|..+. ...+.. .+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 5899999999999999999876543211111111122212222322 236789999997432 222332 3578
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcCCc-EEEEccCCCCChHHH
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKP 163 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~ 163 (173)
+|++++|+|++++.+...+..|...+.... .+.|+++|+||+|+.+..... ... ...+.+ ++++||++|.|++++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~-~~~~~~~~v~ISAktG~GIdeL 353 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDR-DEENKPIRVWLSAQTGAGIPLL 353 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHH-HhcCCCceEEEeCCCCCCHHHH
Confidence 999999999999887777654444444332 378999999999996532111 111 123444 488999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
++++.+.+
T Consensus 354 ~e~I~~~l 361 (426)
T PRK11058 354 FQALTERL 361 (426)
T ss_pred HHHHHHHh
Confidence 99998876
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=145.16 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=104.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cchhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~ 82 (173)
.+.-.|+++|.+|+|||||+|++++..... ..+...++..............+.+|||||...... .....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~-vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISI-VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceee-cCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 345679999999999999999987665432 233333444433333333447899999999754332 22335
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHH-HHHHHHHc-CCcEEEEccCCCCC
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYN 159 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~-~~~~~~~~-~~~~~~~S~~~~~~ 159 (173)
+..+|++++|+|+++..+ ......+..+.. .+.|+++|+||+|+.. .....+ ...+.... ...++++||+++.|
T Consensus 82 ~~~~D~il~vvd~~~~~~-~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG-PGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred HhcCCEEEEEEeCCCCCC-hhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 678999999999988321 111222333332 3789999999999973 222222 22333333 36789999999999
Q ss_pred hHHHHHHHHHHh
Q 030693 160 FEKPFLYLARKL 171 (173)
Q Consensus 160 i~~~~~~i~~~i 171 (173)
++++++++.+.+
T Consensus 159 v~~L~~~L~~~l 170 (292)
T PRK00089 159 VDELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHHhC
Confidence 999999998765
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=138.37 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=87.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC-CEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-~~~i~v~ 93 (173)
+|+++|++++|||+|+++|..+.+...+.++ .................+.+||+||+++++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999998888766554433 2222222222123457899999999999998888899998 9999999
Q ss_pred ECCCh-hhhhcHHHHHHHHhh----hcCCCCEEEEEeCCCCcc
Q 030693 94 DVTAR-LTYKNVPTWHRDLCR----VCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 94 d~~~~-~s~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~ 131 (173)
|+.+. +++.....++..+.. ..++.|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 667766665544432 225899999999999865
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=153.91 Aligned_cols=150 Identities=20% Similarity=0.164 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc--------cccCcchhhccCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYIHG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~~~ 86 (173)
+|+++|.+|+|||||+|+|.++.. .......|++...........+..+.+|||||.. .+......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 589999999999999999876553 2234455555554444433345679999999963 3334455678899
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHHHH
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~ 165 (173)
|++++|+|+.++.+..+ ..+...+++. ++|+++|+||+|+.+.... ..+ +...++ .++++||.+|.|+.++++
T Consensus 80 d~vl~vvD~~~~~~~~d-~~i~~~l~~~--~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPED-EEIAKWLRKS--GKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHH-HHHHHHHHHh--CCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCChHHHHH
Confidence 99999999987533222 1222333332 7899999999998754321 222 334555 799999999999999999
Q ss_pred HHHHHh
Q 030693 166 YLARKL 171 (173)
Q Consensus 166 ~i~~~i 171 (173)
++.+.+
T Consensus 154 ~i~~~l 159 (429)
T TIGR03594 154 AILELL 159 (429)
T ss_pred HHHHhc
Confidence 998765
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=158.41 Aligned_cols=157 Identities=19% Similarity=0.212 Sum_probs=109.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc--ceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+..+|+++|.+++|||||+++|....+.....+ |.............+....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4567999999999999999999876655432222 21112222333333456899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHH------HHHcC--CcEEEEccCCCCCh
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYNF 160 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~------~~~~~--~~~~~~S~~~~~~i 160 (173)
+++|+|++++...+.... +..+.. .++|+++++||+|+.+.....-...+ ....+ ++++++||++|.|+
T Consensus 322 aILVVDA~dGv~~QT~E~-I~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GI 398 (742)
T CHL00189 322 AILIIAADDGVKPQTIEA-INYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNI 398 (742)
T ss_pred EEEEEECcCCCChhhHHH-HHHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCH
Confidence 999999987533222221 222222 38999999999999764321111111 11222 68999999999999
Q ss_pred HHHHHHHHHH
Q 030693 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
.++++++...
T Consensus 399 deLle~I~~l 408 (742)
T CHL00189 399 DKLLETILLL 408 (742)
T ss_pred HHHHHhhhhh
Confidence 9999998753
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=124.38 Aligned_cols=160 Identities=21% Similarity=0.372 Sum_probs=124.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcc--cccccceeEEEEEEEEE-ecCcEEEEEEEeCCCcccc-cCcchhhccCCC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFF-TNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQ 87 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~-~~~~~~~~~~~~ 87 (173)
+-.|++++|..++|||+|+++++.+... ..+.+|+.. .+...+. -.+..-.+.++||.|-..+ ..+-++|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 4579999999999999999998876543 345566653 3333332 2344568999999996655 678899999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
++++|||..+++||+.+..+-..|.+.. ..+|+++++||+|+.+ +.. ..-...|+.+..+.++++++.+...+-|.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 9999999999999987765545554432 4789999999999965 333 33445799999999999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|-+++..+.
T Consensus 167 f~~l~~rl~ 175 (198)
T KOG3883|consen 167 FTYLASRLH 175 (198)
T ss_pred HHHHHHhcc
Confidence 999988754
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=155.22 Aligned_cols=150 Identities=19% Similarity=0.121 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh---CCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT---GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
+.|+++|.+++|||||+++|.+ +.++....+....+.....+..+ ...+.+||+||++.|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--DYRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--CEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4689999999999999999774 23333333333333332233333 378999999999999888888889999999
Q ss_pred EEEECCCh---hhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccccc----HHHHHHHHHc----CCcEEEEccCCCC
Q 030693 91 IMFDVTAR---LTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEISAKSNY 158 (173)
Q Consensus 91 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~----~~~~~~~~~~----~~~~~~~S~~~~~ 158 (173)
+|+|++++ .+.+.+ ..+.. .++| +++|+||+|+.+.... .+..++.... +++++++|+++|.
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 99999974 333222 22222 2677 9999999999764321 2223444433 5789999999999
Q ss_pred ChHHHHHHHHHHh
Q 030693 159 NFEKPFLYLARKL 171 (173)
Q Consensus 159 ~i~~~~~~i~~~i 171 (173)
|++++++++.+.+
T Consensus 153 GI~eL~~~L~~l~ 165 (581)
T TIGR00475 153 GIGELKKELKNLL 165 (581)
T ss_pred CchhHHHHHHHHH
Confidence 9999999887643
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=149.44 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=107.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc-----------c
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------R 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~ 79 (173)
...++|+++|.+|+|||||++++++.... ...+..|++.......+......+.+|||||..+.... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERV-IVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 34699999999999999999998755421 22344556666555444445567899999997543322 1
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHH----HcCCcEEEEcc
Q 030693 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHR----KKNLQYYEISA 154 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~----~~~~~~~~~S~ 154 (173)
..+++.+|++++|+|++++.+.++.. +...+... ++|+++++||+|+.+.....+.. .... ...++++++||
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 23577899999999999876655432 33333332 78999999999997433222221 1111 23578999999
Q ss_pred CCCCChHHHHHHHHHH
Q 030693 155 KSNYNFEKPFLYLARK 170 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~ 170 (173)
++|.|+.++++.+.+.
T Consensus 327 ~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 327 LTGQGVDKLLEAIDEA 342 (435)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988764
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=156.33 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=106.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+...|+++|..++|||||+++|..+.+...... |.+.......+......+.||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~--GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAG--GITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccC--ceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45668899999999999999999876655433222 2332222222222346799999999999999999899999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHH---HHHHc--CCcEEEEccCCCCChH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVT---FHRKK--NLQYYEISAKSNYNFE 161 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~---~~~~~--~~~~~~~S~~~~~~i~ 161 (173)
++|+|+++...-+.... +..... .++|+++++||+|+.+..... +... +...+ .++++++||++|.|++
T Consensus 365 ILVVdAddGv~~qT~e~-i~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 365 VLVVAADDGVMPQTIEA-INHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EEEEECCCCCCHhHHHH-HHHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99999987532122111 122222 389999999999996532111 1111 11222 2689999999999999
Q ss_pred HHHHHHHH
Q 030693 162 KPFLYLAR 169 (173)
Q Consensus 162 ~~~~~i~~ 169 (173)
+++++|..
T Consensus 442 eLle~I~~ 449 (787)
T PRK05306 442 ELLEAILL 449 (787)
T ss_pred HHHHhhhh
Confidence 99999864
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=152.21 Aligned_cols=147 Identities=23% Similarity=0.199 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc--------ccCcchhhccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 85 (173)
.+|+++|.+|+|||||+++|.+.... ......+++...........+..+.+|||||.+. +......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~-~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA-IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 58999999999999999998766532 1233344444333322222347899999999876 22234456789
Q ss_pred CCEEEEEEECCChhhhh--cHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHH
Q 030693 86 GQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~ 162 (173)
+|++++|+|+.++.+.. .+..|+. .. +.|+++|+||+|+.+.. ....++ ...++ .++++||++|.|+.+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~---~~--~~piilv~NK~D~~~~~--~~~~~~-~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILR---KS--NKPVILVVNKVDGPDEE--ADAYEF-YSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH---Hc--CCcEEEEEECccCccch--hhHHHH-HhcCCCCCEEEEeeCCCCHHH
Confidence 99999999998753322 2223333 22 78999999999975522 122233 34455 489999999999999
Q ss_pred HHHHHHH
Q 030693 163 PFLYLAR 169 (173)
Q Consensus 163 ~~~~i~~ 169 (173)
+++++.+
T Consensus 153 l~~~I~~ 159 (435)
T PRK00093 153 LLDAILE 159 (435)
T ss_pred HHHHHHh
Confidence 9999876
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-22 Score=154.25 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=103.8
Q ss_pred cCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc------chhhc--cCCCEEEE
Q 030693 20 GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAII 91 (173)
Q Consensus 20 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~~~~i~ 91 (173)
|.+|+|||||+|++.+..... ....|++...........+..+++|||||+.++... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v--~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTV--GNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCee--cCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999987665432 334455555444333333456899999999877654 33343 37899999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|+|+++.+.. ..+..++.+ .+.|+++++||+|+.++. ...+...+.+..+++++++||++|+|++++++++.+.
T Consensus 79 VvDat~ler~---l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchhh---HHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 9999875421 222333333 389999999999996543 3334567778889999999999999999999999864
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-22 Score=148.13 Aligned_cols=155 Identities=16% Similarity=0.102 Sum_probs=108.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC-cEEEEEEEeCCCcccccC----cch---hhccCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGG----LRD---GYYIHG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~----~~~---~~~~~~ 86 (173)
.|+++|.||||||||+|++...+. ...+...+|.......+.. ....+.++||||...... +.. ..+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 699999999999999999775543 3334444555544443332 234689999999753221 112 246789
Q ss_pred CEEEEEEECC---ChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHH-HHHHHHHcC--CcEEEEccCCC
Q 030693 87 QCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN--LQYYEISAKSN 157 (173)
Q Consensus 87 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~--~~~~~~S~~~~ 157 (173)
+++++|+|++ +.+.++....|+..+..+. .+.|+++|+||+|+.......+ ...+....+ ..++++||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 9999999998 4455666667777776653 4789999999999975432222 223444433 46899999999
Q ss_pred CChHHHHHHHHHHh
Q 030693 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
.|+.+++++|.+.+
T Consensus 319 ~GIdeLl~~I~~~L 332 (390)
T PRK12298 319 LGVKELCWDLMTFI 332 (390)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=156.99 Aligned_cols=153 Identities=23% Similarity=0.183 Sum_probs=107.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc--------cCcchhhc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~ 83 (173)
...+|+++|.+|+|||||+|+|++... .....+.|++...........+..+.+|||||.+.. ......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 347899999999999999999876543 333456677776665554444568999999997632 22334567
Q ss_pred cCCCEEEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 84 IHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
..+|++++|+|+++.. .... .|...+.. .+.|+++|+||+|+.... ....++.....-..+++||++|.|+.+
T Consensus 353 ~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~~~~~~iSA~~g~GI~e 426 (712)
T PRK09518 353 SLADAVVFVVDGQVGL--TSTDERIVRMLRR--AGKPVVLAVNKIDDQASE--YDAAEFWKLGLGEPYPISAMHGRGVGD 426 (712)
T ss_pred HhCCEEEEEEECCCCC--CHHHHHHHHHHHh--cCCCEEEEEECcccccch--hhHHHHHHcCCCCeEEEECCCCCCchH
Confidence 8999999999998642 2222 34444444 489999999999986532 112222222222467999999999999
Q ss_pred HHHHHHHHh
Q 030693 163 PFLYLARKL 171 (173)
Q Consensus 163 ~~~~i~~~i 171 (173)
+++++++.+
T Consensus 427 Ll~~i~~~l 435 (712)
T PRK09518 427 LLDEALDSL 435 (712)
T ss_pred HHHHHHHhc
Confidence 999998765
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=148.81 Aligned_cols=154 Identities=20% Similarity=0.184 Sum_probs=103.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCC--ccc---------------------------ccccceeEEEEEEEEEecCc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
..+.++|+++|.+++|||||+++|+... ... ......|++.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3567999999999999999999987321 100 00113466666666666667
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc------
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------ 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------ 134 (173)
.+.+.+|||||++.|.......+..+|++++|+|++++.+......+...+.......|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 78999999999988876555567889999999999873222222222222222222346899999999975211
Q ss_pred cHHHHHHHHHcC-----CcEEEEccCCCCChHHH
Q 030693 135 KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (173)
Q Consensus 135 ~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 163 (173)
..+..+++...+ .+++++||++|+|+.+.
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 122234444444 56999999999999863
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=128.42 Aligned_cols=150 Identities=18% Similarity=0.218 Sum_probs=102.7
Q ss_pred EEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcc-------hhhccCCCEE
Q 030693 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR-------DGYYIHGQCA 89 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~-------~~~~~~~~~~ 89 (173)
++|++|+|||||++++....... .....+.+......... .....+.+||+||...+.... ..+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 57999999999999977554331 12222223222222222 125689999999987655433 3477899999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-----HHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++|+|+.+..+..... +...... .+.|+++|+||+|+......... .......+.+++++|++++.|+.+++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 9999999876555443 3333333 38999999999998764433322 12333456889999999999999999
Q ss_pred HHHHHHh
Q 030693 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+++.+.+
T Consensus 157 ~~l~~~~ 163 (163)
T cd00880 157 EALIEAL 163 (163)
T ss_pred HHHHhhC
Confidence 9988753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=155.87 Aligned_cols=156 Identities=16% Similarity=0.202 Sum_probs=103.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc-cCc----------ch
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGL----------RD 80 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-~~~----------~~ 80 (173)
..+||+++|.+|+|||||+++++..... ...+..|++.......+...+..+.+|||||..+. +.. ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~-~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERA-VVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc-ccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 3589999999999999999998876532 11223334444333222223345779999996421 111 12
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHH-HHHH----cCCcEEEEccC
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRK----KNLQYYEISAK 155 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~S~~ 155 (173)
.+++.+|++++|+|++++.+.+... ++..+.. .++|+++|+||+|+.+......... +... ...+.+++||+
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 3467899999999999887766654 3334433 3899999999999975332222221 1111 13567999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030693 156 SNYNFEKPFLYLARKL 171 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i 171 (173)
+|.|+.++++.+.+..
T Consensus 605 tg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 605 TGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988754
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=147.22 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=104.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhh--CCcccc---------------------------cccceeEEEEEEEEEecCc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 60 (173)
+.+.++|+++|..++|||||+++|+. +..... .....|.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45679999999999999999999875 222110 0112245555444555666
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-c-----
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-Q----- 133 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~----- 133 (173)
.+.+.+||+||++.|.......+..+|++++|+|++++++..... .+...+.......|+++++||+|+.+. .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 789999999999988766666678999999999999885432211 122222333334579999999999641 1
Q ss_pred ccHHHHHHHHHcC-----CcEEEEccCCCCChHH
Q 030693 134 VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (173)
Q Consensus 134 ~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 162 (173)
...+..+++...+ ++++++||++|.|+.+
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 1122334555444 5799999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=145.43 Aligned_cols=152 Identities=18% Similarity=0.076 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc---------Ccchhhcc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYI 84 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~~~~ 84 (173)
..|+++|.||+|||||.|+|++.+. .....+.|+|++.........+..|.++||+|.+... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 5799999999999999999776654 4456788888888776666666779999999966332 23455688
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
+||++++|+|....-+- ....+..+.. ..++|+++|+||+|-... .....++....--..+++||..|.|+.+++
T Consensus 83 eADvilfvVD~~~Git~--~D~~ia~~Lr-~~~kpviLvvNK~D~~~~--e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 83 EADVILFVVDGREGITP--ADEEIAKILR-RSKKPVILVVNKIDNLKA--EELAYEFYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred hCCEEEEEEeCCCCCCH--HHHHHHHHHH-hcCCCEEEEEEcccCchh--hhhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence 99999999999874321 1222222222 237999999999997622 222345555555679999999999999999
Q ss_pred HHHHHHh
Q 030693 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
+++...+
T Consensus 158 d~v~~~l 164 (444)
T COG1160 158 DAVLELL 164 (444)
T ss_pred HHHHhhc
Confidence 9998764
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=124.62 Aligned_cols=158 Identities=21% Similarity=0.216 Sum_probs=120.1
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCccc--------cc----ccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK--------KY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
.+.....||++.|+.++||||+++++....... .+ ..|...++..... +....+.+++||||+++
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHHH
Confidence 345667999999999999999999965443210 00 1122222222222 23468899999999999
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHc--CCcEEEEc
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEIS 153 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~S 153 (173)
+.+|.-+++++.++++++|.+.+..+ .....++.+.... ..|++|+.||.|+.+....+...+..... ..+.++.+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeee
Confidence 99999999999999999999988776 4444444444442 29999999999999998888877766665 78999999
Q ss_pred cCCCCChHHHHHHHHHH
Q 030693 154 AKSNYNFEKPFLYLARK 170 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~ 170 (173)
+..+++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999999887764
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=142.81 Aligned_cols=152 Identities=17% Similarity=0.192 Sum_probs=116.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhhc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 83 (173)
.-+|++++|.||+|||||+|.|+ +......+.-.|+|++.++..+.-.++++.+.||+|..+.... ....+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~-~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALL-GRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHh-cCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 35899999999999999999955 5555667888899999999988889999999999998755443 34457
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
.+||.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.|+......... ....+.+.+.+|+++++|++.+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHHH
Confidence 899999999999986221221 1111 23358999999999999876543322 2223447899999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
.+.|.+.+
T Consensus 368 ~~~i~~~~ 375 (454)
T COG0486 368 REAIKQLF 375 (454)
T ss_pred HHHHHHHH
Confidence 99987754
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=132.69 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=112.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 82 (173)
.+.--|+++|.||+|||||+|++++.+.. ..++...+|+..+..........+.|+||||..+.+.. ....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~Kis-IvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceE-eecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 45577999999999999999997766643 44666667777776666667889999999996544332 2334
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc-HHHHHHHHHc--CCcEEEEccCCCCC
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKK--NLQYYEISAKSNYN 159 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~--~~~~~~~S~~~~~~ 159 (173)
+..+|++++|+|++..-.- .....++.++. .+.|+++++||+|....... ....+.+... ....+++||+.|.|
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 6789999999999874321 11223344444 36899999999998775542 3333333222 24689999999999
Q ss_pred hHHHHHHHHHHh
Q 030693 160 FEKPFLYLARKL 171 (173)
Q Consensus 160 i~~~~~~i~~~i 171 (173)
++.+.+.+...+
T Consensus 160 ~~~L~~~i~~~L 171 (298)
T COG1159 160 VDTLLEIIKEYL 171 (298)
T ss_pred HHHHHHHHHHhC
Confidence 999999988765
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=146.43 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=114.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh--CCccccc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
-.+|+++|..++|||||+++|+. +.+.... ..+.|.+.......+....+.+.+|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999885 3332221 234566766666666667899999999999999999
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHHHHH-------HcCCc
Q 030693 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHR-------KKNLQ 148 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~-------~~~~~ 148 (173)
+..+++.+|++++|+|+.+....+. ..++...... ++|.++++||+|+.+..... +...+.. ...++
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence 9999999999999999987643322 2223333333 88999999999987643322 2222221 12467
Q ss_pred EEEEccCCCC----------ChHHHHHHHHHHh
Q 030693 149 YYEISAKSNY----------NFEKPFLYLARKL 171 (173)
Q Consensus 149 ~~~~S~~~~~----------~i~~~~~~i~~~i 171 (173)
++++||++|. ++..+++.+.+.+
T Consensus 162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred EEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 8999999998 5888998887765
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=126.53 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc----------ccCcchhhcc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDGYYI 84 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~~ 84 (173)
.|+++|.+|+|||||++.+..+.......++.+.+........+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 479999999999999999886665555566666655444443332 899999999533 2233333444
Q ss_pred ---CCCEEEEEEECCChhhh--hcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH----HHHHHH--HcCCcEEEEc
Q 030693 85 ---HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHR--KKNLQYYEIS 153 (173)
Q Consensus 85 ---~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~--~~~~~~~~~S 153 (173)
..+++++++|.....+. ..+..|+. .. +.|+++++||+|+........ ...... ....+++++|
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 35788899998865321 22223333 22 689999999999854322111 112222 3456889999
Q ss_pred cCCCCChHHHHHHHHHHh
Q 030693 154 AKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i 171 (173)
++++.++.+++++|.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-23 Score=138.15 Aligned_cols=161 Identities=34% Similarity=0.537 Sum_probs=138.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcE-EEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.-+|++|+|.-|+|||+++.+++...+...+..++|.++.-.....+..+ +++++||+.|++++..+++-|++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 34899999999999999999999999999999999999887776666554 58999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccccccH---HHHHHHHHcCC-cEEEEccCCCCChH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNL-QYYEISAKSNYNFE 161 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~~~S~~~~~~i~ 161 (173)
+|||++....|+...+|...+.... .-+|+++..||||.......+ ...++.+++++ .++++|++.+.+++
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence 9999999999999999999886643 246788999999998754433 23467777775 69999999999999
Q ss_pred HHHHHHHHHhh
Q 030693 162 KPFLYLARKLA 172 (173)
Q Consensus 162 ~~~~~i~~~i~ 172 (173)
|.-+.+.+.++
T Consensus 184 Ea~r~lVe~~l 194 (229)
T KOG4423|consen 184 EAQRELVEKIL 194 (229)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=130.90 Aligned_cols=146 Identities=20% Similarity=0.201 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcc-cc-c---------------------------ccceeEEEEEEEEEecCcEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KK-Y---------------------------EPTIGVEVHPLDFFTNCGKIRFY 65 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~-~~-~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (173)
||+++|.+|+|||||+++|+...-. .. . ....|++.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999998643210 00 0 00134444444444444566889
Q ss_pred EEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc------cHHHH
Q 030693 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV 139 (173)
Q Consensus 66 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~ 139 (173)
+|||||++.+.......+..+|++++|+|++++..-+.. .....+ ......++++|+||+|+.+... ..+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~-~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYIL-SLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHH-HHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 999999988766566678899999999999875322211 111222 2222235788899999865211 11223
Q ss_pred HHHHHcC---CcEEEEccCCCCChHH
Q 030693 140 TFHRKKN---LQYYEISAKSNYNFEK 162 (173)
Q Consensus 140 ~~~~~~~---~~~~~~S~~~~~~i~~ 162 (173)
++....+ .+++++||++|.|+.+
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 3444555 3589999999999874
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=146.69 Aligned_cols=155 Identities=16% Similarity=0.226 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CCccccc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 79 (173)
.+|+++|+.++|||||+++|+. +.+.... ....|.+.......+....+.+.+|||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 3799999999999999999875 3322211 1123455555444455567899999999999998888
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc---cHHHHHHHH-------HcCCcE
Q 030693 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHR-------KKNLQY 149 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~ 149 (173)
..+++.+|++++|+|+.+... .....++..+... ++|+++|+||+|+.+... ..+...++. +..+++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 899999999999999987532 2234455555554 889999999999865332 222233332 235679
Q ss_pred EEEccCCCC----------ChHHHHHHHHHHh
Q 030693 150 YEISAKSNY----------NFEKPFLYLARKL 171 (173)
Q Consensus 150 ~~~S~~~~~----------~i~~~~~~i~~~i 171 (173)
+++||++|. |+..+|+.+.+.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999996 7999999998765
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=130.18 Aligned_cols=150 Identities=15% Similarity=0.063 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-------cchhhccCCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ 87 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~~ 87 (173)
+|+++|.+|+|||||+++|.+..... ....+++.......+......+++||+||..+... ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v--~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV--AAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc--cCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999977554221 11111222222222222457899999999754331 1234688999
Q ss_pred EEEEEEECCChh-hhhcHHHHHHH--------------------------------------------------------
Q 030693 88 CAIIMFDVTARL-TYKNVPTWHRD-------------------------------------------------------- 110 (173)
Q Consensus 88 ~~i~v~d~~~~~-s~~~~~~~~~~-------------------------------------------------------- 110 (173)
++++|+|+++++ +.+.+.+.+..
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 23222222211
Q ss_pred ----------HhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 111 ----------LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 111 ----------~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+.......|+++|+||+|+.... +...++. ...++++||+++.|++++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~---~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE---ELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHH---HHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 01111246999999999986432 2223433 34689999999999999999998754
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=144.58 Aligned_cols=151 Identities=23% Similarity=0.275 Sum_probs=100.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccc----cccceeEEEEEEEEEe------------cCcEEEEEEEeCCCccccc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT------------NCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~G~~~~~ 76 (173)
..-|+++|.+++|||||+++|....+... .+.+.|.+........ ......+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34689999999999999999876655322 1222333222111100 0001238899999999999
Q ss_pred CcchhhccCCCEEEEEEECCCh---hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--------------cHHH-
Q 030693 77 GLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQ- 138 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~~~- 138 (173)
.++..+++.+|++++|+|+++. .+++.+ ..+.. .++|+++++||+|+.+... ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEAL----NILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 9999999999999999999973 333322 22222 3889999999999864100 0000
Q ss_pred -----------HHHHH--------------HcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 139 -----------VTFHR--------------KKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 139 -----------~~~~~--------------~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.++.. ....+++++||++|+|++++++++..
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 00110 01367899999999999999998864
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-20 Score=125.27 Aligned_cols=145 Identities=16% Similarity=0.060 Sum_probs=97.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcc--------------cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
.++|+++|..++|||||+++|+..... .......|.+.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999998753100 001113345555545555556678899999999887776
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc-c----HHHHHHHHHc-----CC
Q 030693 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-K----AKQVTFHRKK-----NL 147 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~----~~~~~~~~~~-----~~ 147 (173)
....+..+|++++|+|+...-.-+ ....+..+... ++| +++++||+|+..... . .+..+..... ++
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v 158 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNT 158 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence 777788999999999998653222 12233333333 676 788999999864221 1 1222333332 36
Q ss_pred cEEEEccCCCCCh
Q 030693 148 QYYEISAKSNYNF 160 (173)
Q Consensus 148 ~~~~~S~~~~~~i 160 (173)
+++++||++|.++
T Consensus 159 ~iipiSa~~g~n~ 171 (195)
T cd01884 159 PIVRGSALKALEG 171 (195)
T ss_pred eEEEeeCccccCC
Confidence 7999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=140.03 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=102.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc------ceeEEEEEEE--------------E--EecC------cEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP------TIGVEVHPLD--------------F--FTNC------GKI 62 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~------~~~~~~~~~~--------------~--~~~~------~~~ 62 (173)
.+.++|+++|.+++|||||+++|.. .+...+.+ |....+.... . .++. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~-~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTG-VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhC-eecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 4679999999999999999999643 22111111 1111111000 0 0011 146
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc----HHH
Q 030693 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQ 138 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~ 138 (173)
.+.+||+||+++|...+......+|++++|+|++++.........+..+ ......|+++++||+|+.+.... .+.
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 7999999999999888888888899999999999653111222222222 22223468999999999753221 122
Q ss_pred HHHHHHc---CCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 139 VTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 139 ~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.++.... +++++++||++|+|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 2333332 57899999999999999999998753
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=124.81 Aligned_cols=156 Identities=14% Similarity=0.197 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccC-----cchhhccCCCE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGG-----LRDGYYIHGQC 88 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~~~ 88 (173)
||+++|+.+|||||+.+.+..+. ++......|.|...-...+ ....+.+.+||+||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999855444 4333445555544433333 24567999999999875543 45667899999
Q ss_pred EEEEEECCChh---hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH--------HHHHHHHHcC---CcEEEEcc
Q 030693 89 AIIMFDVTARL---TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--------KQVTFHRKKN---LQYYEISA 154 (173)
Q Consensus 89 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--------~~~~~~~~~~---~~~~~~S~ 154 (173)
+|||+|+.+.+ .+..+...+..+.+..|+..+-++++|+|+....... ...+.+...+ +.++.+|.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999999443 4445556677777888999999999999986532222 2223333444 77899998
Q ss_pred CCCCChHHHHHHHHHHhh
Q 030693 155 KSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~ 172 (173)
.+ +.+-+.|..+.+.++
T Consensus 160 ~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp TS-THHHHHHHHHHHTTS
T ss_pred cC-cHHHHHHHHHHHHHc
Confidence 88 689999998888664
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=141.05 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=122.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|..|+||||||-+++...+++..++... ...+...+....++..+.|++..++-+.....-++++|++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 5679999999999999999999999988776555432 11222333345567899999866655555566789999999
Q ss_pred EEEECCChhhhhcHHH-HHHHHhhhc---CCCCEEEEEeCCCCcccccc--H-HHHHHHHHcC--CcEEEEccCCCCChH
Q 030693 91 IMFDVTARLTYKNVPT-WHRDLCRVC---ENIPIVLCGNKVDVKNRQVK--A-KQVTFHRKKN--LQYYEISAKSNYNFE 161 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~-~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~--~-~~~~~~~~~~--~~~~~~S~~~~~~i~ 161 (173)
++|+.+++++++.++. |+..+++.. .++|+|+|+||+|+...... + +...+...+. -..++|||++..++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 9999999999999984 999999887 68999999999998763322 1 1222333322 346899999999999
Q ss_pred HHHHHHHHHhhC
Q 030693 162 KPFLYLARKLAG 173 (173)
Q Consensus 162 ~~~~~i~~~i~~ 173 (173)
|+|....+.++|
T Consensus 165 e~fYyaqKaVih 176 (625)
T KOG1707|consen 165 ELFYYAQKAVIH 176 (625)
T ss_pred hhhhhhhheeec
Confidence 999887776653
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=132.30 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=114.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-----------cch
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-----------LRD 80 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~~ 80 (173)
..+||+++|.||+|||||+|++++ .......+..|+|++.+...++.....+.++||+|..+-.. ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilg-eeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILG-EERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhcc-CceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 469999999999999999999664 44555677889999999888887788999999999543222 233
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccH-HHH-HHHHH----cCCcEEEEc
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-KQV-TFHRK----KNLQYYEIS 153 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~-~~~-~~~~~----~~~~~~~~S 153 (173)
..+..++++++|+|++.+-+-++.+ ....+.+ .+.++++|+||.|+.+.. ... +.. .+-+. ...+.+.+|
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 3567899999999999876555543 2223333 388999999999987641 222 111 22222 246789999
Q ss_pred cCCCCChHHHHHHHHHH
Q 030693 154 AKSNYNFEKPFLYLARK 170 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~ 170 (173)
|++|.++.++|+++...
T Consensus 333 A~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 333 ALTGQGLDKLFEAIKEI 349 (444)
T ss_pred ecCCCChHHHHHHHHHH
Confidence 99999999999998753
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=136.49 Aligned_cols=162 Identities=16% Similarity=0.112 Sum_probs=101.0
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccc--cceeEEEEE----EEEE----------------ec--C---
Q 030693 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHP----LDFF----------------TN--C--- 59 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~----~~~~----------------~~--~--- 59 (173)
+....+.++|+++|..++|||||+.+|.. .+..... ...|.+... .... .+ +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~-~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTG-VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhC-eecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence 34556689999999999999999998643 2211111 011222211 0100 00 0
Q ss_pred -cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-
Q 030693 60 -GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA- 136 (173)
Q Consensus 60 -~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~- 136 (173)
....+.+||+||++.|..........+|++++|+|++++. ..+. ...+..+.. ....|+++|+||+|+.+.....
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~-~~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDI-IGIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHH-cCCCcEEEEEEeeccccchhHHH
Confidence 1367899999999887665555556679999999999643 1121 112222222 2234689999999997633221
Q ss_pred ---HHHHHHHH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 137 ---KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 137 ---~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+...++.. .+.+++++||++|.|+++++++|.+.+
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 12233322 247899999999999999999998754
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=116.66 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=90.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc----cccCcchhhccCCCEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----KFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~~~~i 90 (173)
||+++|+.|+|||||+++|.+... .+..|..+.+.. .++||||.- .+..-......++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999655433 334444322221 347999931 11111222345899999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHHHHHHHHHcCC-cEEEEccCCCCChHHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i~ 168 (173)
++.|++++.+.-. ..+.... +.|++-|+||+|+.. ....+...++.+.-|+ ..|++|+.+|+|++++.++|.
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEecCCCCCccCC-----chhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 9999998753222 1222222 689999999999993 3333334456666565 479999999999999999874
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-20 Score=128.47 Aligned_cols=146 Identities=19% Similarity=0.153 Sum_probs=94.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC--Ccc---------------------------cccccceeEEEEEEEEEecCcEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG--EFE---------------------------KKYEPTIGVEVHPLDFFTNCGKIRFY 65 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (173)
+|+++|..++|||||+++|+.. ... .......|++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999998632 110 00011234555555555555678999
Q ss_pred EEeCCCcccccCcchhhccCCCEEEEEEECCChhh---h---hcHHHHHHHHhhhcCCCCEEEEEeCCCCccc----ccc
Q 030693 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y---KNVPTWHRDLCRVCENIPIVLCGNKVDVKNR----QVK 135 (173)
Q Consensus 66 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~ 135 (173)
+|||||+..+...+...+..+|++++|+|++++.. + ......+... ......|+++++||+|+... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCCCeEEEEEEccccccccccHHHH
Confidence 99999998777666667788999999999998521 1 1112212222 22234689999999999732 111
Q ss_pred H----HHHHHHHHc-----CCcEEEEccCCCCChH
Q 030693 136 A----KQVTFHRKK-----NLQYYEISAKSNYNFE 161 (173)
Q Consensus 136 ~----~~~~~~~~~-----~~~~~~~S~~~~~~i~ 161 (173)
. +........ +.+++++||++|.|+.
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 111223333 3569999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=120.40 Aligned_cols=155 Identities=18% Similarity=0.295 Sum_probs=123.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.-|++++|-.|+|||||++.|..++.. .+.||...+.....+ .+.+|+.+|.+|+...+..|..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 4568999999999999999996665544 457887777776666 77899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHH------HHHHHcC-----------CcEEEE
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKN-----------LQYYEI 152 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~~-----------~~~~~~ 152 (173)
.+|+.+.+.+.+.+..++.+.... .++|+++.+||+|.+......+.. ++....+ ...+.|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 999999999999888777775543 699999999999998865433332 2222111 236789
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030693 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
|...+.+..+.|.|+.+.+
T Consensus 174 si~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEccCccceeeeehhhhc
Confidence 9999999999998877643
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=125.03 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=100.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccc-----------c------ccceeEEEEEEEE--Ee---cCcEEEEEEEeCCCc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------Y------EPTIGVEVHPLDF--FT---NCGKIRFYCWDTAGQ 72 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~-----------~------~~~~~~~~~~~~~--~~---~~~~~~~~~~D~~G~ 72 (173)
+|+++|+.++|||||+++|+....... + ....|.+...... .. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999886432211 0 0112233222222 11 345689999999999
Q ss_pred ccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-------cc-------cHHH
Q 030693 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------QV-------KAKQ 138 (173)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~-------~~~~ 138 (173)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+... .. ..+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~ 158 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEV 158 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence 9998888888999999999999987654432 233343333 36899999999997521 10 0111
Q ss_pred HHHHHHcCC-----------cEEEEccCCCCChH--------HHHHHHHHHh
Q 030693 139 VTFHRKKNL-----------QYYEISAKSNYNFE--------KPFLYLARKL 171 (173)
Q Consensus 139 ~~~~~~~~~-----------~~~~~S~~~~~~i~--------~~~~~i~~~i 171 (173)
...+...+. .+++.|++.+.++. ++++.|.+.+
T Consensus 159 n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 159 NNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 122222222 26788999888776 7777776654
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-19 Score=138.29 Aligned_cols=153 Identities=24% Similarity=0.287 Sum_probs=98.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccc----cccceeEEEEEEEEEe--cCcE-----E-----EEEEEeCCCccc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT--NCGK-----I-----RFYCWDTAGQEK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~-----~-----~~~~~D~~G~~~ 74 (173)
.+...|+++|.+++|||||++++.+...... ...+.|.+........ .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4456799999999999999999764432211 1123333222211100 0111 1 268999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCC---hhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-----------------
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----------------- 134 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------------- 134 (173)
|..++...+..+|++++|+|+++ +.++..+ ..+.. .++|+++++||+|+.....
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI----NILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 99888888899999999999997 3443333 22222 3889999999999852100
Q ss_pred -cH-------HHHHHHHH---------------cCCcEEEEccCCCCChHHHHHHHHH
Q 030693 135 -KA-------KQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 135 -~~-------~~~~~~~~---------------~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.. +....... ...+++++||++|+|+.++++.+..
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 00011111 1357899999999999999988764
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=133.52 Aligned_cols=158 Identities=12% Similarity=0.036 Sum_probs=104.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC-----C--c-------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG-----E--F-------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~-----~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|.+++|||||+++|+.. . . ........|.+.......+......+.++||||++.|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 356799999999999999999998752 0 0 0011123455555544455555668899999999887
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEE-EEEeCCCCcccccc-----HHHHHHHHHc----
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVK-----AKQVTFHRKK---- 145 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~-----~~~~~~~~~~---- 145 (173)
.......+..+|++++|+|+.+....+. ...+..+.. .++|.+ +++||+|+.+.... .+...+....
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 7666667788999999999987532221 223333332 277855 57999999742211 1223344443
Q ss_pred -CCcEEEEccCCCC----------ChHHHHHHHHHH
Q 030693 146 -NLQYYEISAKSNY----------NFEKPFLYLARK 170 (173)
Q Consensus 146 -~~~~~~~S~~~~~----------~i~~~~~~i~~~ 170 (173)
+++++++|+++|. ++.++++.|.+.
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 3678999999984 677888877654
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=133.58 Aligned_cols=159 Identities=15% Similarity=0.082 Sum_probs=106.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcc--------------cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|..++|||||+++|+..... .......|.+.......+......+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 456799999999999999999998742100 011113455555555555556678899999999988
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccccc-----HHHHHHHHHcC---
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN--- 146 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~--- 146 (173)
.......+..+|++++|+|+.....-+. ...+..+... ++| +++++||+|+.+.... .+..++....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 7666666788999999999987532222 2223333333 778 6788999998743211 12223333333
Q ss_pred --CcEEEEccCCCC--------ChHHHHHHHHHHh
Q 030693 147 --LQYYEISAKSNY--------NFEKPFLYLARKL 171 (173)
Q Consensus 147 --~~~~~~S~~~~~--------~i~~~~~~i~~~i 171 (173)
++++++||++|. ++.++++.+.+.+
T Consensus 166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 579999999983 5788888876653
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=137.35 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=116.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc------Ccchhhcc-
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGYYI- 84 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~- 84 (173)
+..+|+++|+||+|||||.|++.+.+. ......|+|.+..+......+..+++.|+||.-... ...+.|+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 356799999999999999999766554 234566788888888777777789999999953332 23344443
Q ss_pred -CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 85 -HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 85 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
..|+++-|+|+++.+.--.+. -++.+. +.|++++.|++|..++. ...+..++.+..+++++++||++|.|+++
T Consensus 80 ~~~D~ivnVvDAtnLeRnLylt---lQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLT---LQLLEL--GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHH---HHHHHc--CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 469999999999876433332 223333 89999999999997744 45567788899999999999999999999
Q ss_pred HHHHHHHH
Q 030693 163 PFLYLARK 170 (173)
Q Consensus 163 ~~~~i~~~ 170 (173)
+++.+.+.
T Consensus 155 l~~~i~~~ 162 (653)
T COG0370 155 LKRAIIEL 162 (653)
T ss_pred HHHHHHHh
Confidence 99988753
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=133.65 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=102.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC-----Cc---------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG-----EF---------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|..++|||||+++|+.. .. ........|.+.......++.....+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 466799999999999999999998632 00 0011122455555555556666778999999999988
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEE-EEEeCCCCccccc-c----HHHHHHHHHcC---
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV-K----AKQVTFHRKKN--- 146 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~-~----~~~~~~~~~~~--- 146 (173)
..........+|++++|+|+.+....+. ...+..+... ++|.+ +++||+|+.+... . .+..+++...+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 7655556678899999999987432222 1222333332 67755 6899999875322 1 12334454443
Q ss_pred --CcEEEEccCCCC--------ChHHHHHHHH
Q 030693 147 --LQYYEISAKSNY--------NFEKPFLYLA 168 (173)
Q Consensus 147 --~~~~~~S~~~~~--------~i~~~~~~i~ 168 (173)
++++++|+.++. ++.++++++.
T Consensus 166 ~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~ 197 (394)
T TIGR00485 166 DDTPIIRGSALKALEGDAEWEAKILELMDAVD 197 (394)
T ss_pred cCccEEECccccccccCCchhHhHHHHHHHHH
Confidence 789999999875 3445555554
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.5e-19 Score=122.66 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCccccccc-----------------------ceeEEEEEE-------------EEEec
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----------------------TIGVEVHPL-------------DFFTN 58 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~~ 58 (173)
||+++|..++|||||++++..+.+...... ..|.+.... ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999887655321110 011110000 00112
Q ss_pred CcEEEEEEEeCCCcccccCcchhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH
Q 030693 59 CGKIRFYCWDTAGQEKFGGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (173)
Q Consensus 59 ~~~~~~~~~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (173)
.....+.++|+||+++|.......+. .+|++++|+|+..+..-. ...++..+... ++|+++|+||+|+.++....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDLAPANILQ 157 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccccCHHHHH
Confidence 23467899999999988655444443 689999999998654322 12333444433 78999999999986543222
Q ss_pred HHH----HHHH--------------------------HcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 137 KQV----TFHR--------------------------KKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 137 ~~~----~~~~--------------------------~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+.. ++.. ...+++|.+|+.+|+|++++.+.|..
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 211 1211 11247899999999999999987654
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=136.48 Aligned_cols=151 Identities=13% Similarity=0.032 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC---CcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
-|+++|..++|||||+++|.+- .++... ..|.+........ ......+.+||+||+++|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~--~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEK--KRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcc--cCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 5789999999999999997642 222221 1233333221112 112346899999999998777777788999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccccc----HHHHHHHHHcC---CcEEEEccCCCCChHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKKN---LQYYEISAKSNYNFEK 162 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~----~~~~~~~~~~~---~~~~~~S~~~~~~i~~ 162 (173)
+|+|+++...-+. ...+..+... ++| +++|+||+|+.+.... .+..++....+ .+++++|+++|.|+++
T Consensus 80 LVVda~eg~~~qT-~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 80 LVVACDDGVMAQT-REHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9999987421111 1122222222 556 5799999999753221 12223433333 6899999999999999
Q ss_pred HHHHHHHH
Q 030693 163 PFLYLARK 170 (173)
Q Consensus 163 ~~~~i~~~ 170 (173)
++++|.+.
T Consensus 157 L~~~L~~~ 164 (614)
T PRK10512 157 LREHLLQL 164 (614)
T ss_pred HHHHHHHh
Confidence 99998764
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-19 Score=124.70 Aligned_cols=132 Identities=18% Similarity=0.165 Sum_probs=89.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcc--------c-----cc---ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFE--------K-----KY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
+|+++|..|+|||||+++++...-. . .+ ....+.+.......+......+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999998753110 0 00 112233333333444446688999999999999888
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcE
Q 030693 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 149 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (173)
+..+++.+|++++|+|+.+..+. ....++..+... ++|+++++||+|+.......-..++....+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~ 148 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDI 148 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCe
Confidence 88899999999999999986432 223444555443 889999999999986543333334444444433
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=124.88 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC--cccc---------------cc---cceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------------YE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~--~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
.+|+++|.+|+|||||+++++... .... +. ...+.+.......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999987421 1000 00 011223333333455567899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
+|......+++.+|++++|+|+++..... ...++..... .++|+++++||+|+.....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRDP 140 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCCH
Confidence 88877777889999999999998753222 2233333333 3889999999999876543
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-18 Score=113.70 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=108.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc----------ccccCcchh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLRDG 81 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~~ 81 (173)
....|+++|.+|+|||||+|++++.+--.....|+|.|...-.+..++. +.+.|.||. +....+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 4568999999999999999998876755566778888887766665544 889999993 233344455
Q ss_pred hccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHHHc----CCc--EEE
Q 030693 82 YYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQ--YYE 151 (173)
Q Consensus 82 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~----~~~--~~~ 151 (173)
|+.. -.++++++|+..+....+. .+++.+... ++|+++++||+|-.......... ..+... ... ++.
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~ 176 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVL 176 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEE
Confidence 5543 4688889998865432221 344444444 99999999999977644333222 222222 222 788
Q ss_pred EccCCCCChHHHHHHHHHHh
Q 030693 152 ISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i 171 (173)
.|+..+.|++++.+.|.+.+
T Consensus 177 ~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 177 FSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EecccccCHHHHHHHHHHHh
Confidence 99999999999999988765
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=122.41 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=107.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc------------cCc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF------------GGL 78 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------------~~~ 78 (173)
.+.++|+++|+||+|||||.|.+++.+..+. .....+|+......+......+.|+||||.-.. ...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~v-S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV-SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccc-cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4568999999999999999999888776655 444456777777777777889999999993211 122
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHH
Q 030693 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRK 144 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~ 144 (173)
....+..||.+++|+|+++....-. ...+..+..+ .++|-++|.||.|..... ......++...
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 3345678999999999997432111 1233334333 478989999999965311 11001111111
Q ss_pred c-----------------CCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 145 K-----------------NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 145 ~-----------------~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
. --.+|.+||++|+|++++.++|..+.
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 1 11378999999999999999998764
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-18 Score=128.59 Aligned_cols=147 Identities=15% Similarity=0.071 Sum_probs=98.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCc--------------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|.+++|||||+++|+...- ........|.+.......+......+.+.||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 45679999999999999999999875311 0011112455555544455556678889999999887
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccccc-----HHHHHHHHHcC---
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN--- 146 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~--- 146 (173)
.......+..+|++++|+|+.....-+. ...+..+... ++| +++++||+|+.+.... .+...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~ 165 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG 165 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7666677789999999999986532222 2223333333 778 7789999999753221 12223333332
Q ss_pred --CcEEEEccCCCCC
Q 030693 147 --LQYYEISAKSNYN 159 (173)
Q Consensus 147 --~~~~~~S~~~~~~ 159 (173)
.+++++|+.+|.+
T Consensus 166 ~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 166 DDIPIVSGSALLALE 180 (409)
T ss_pred CcceEEEcchhhccc
Confidence 6799999998874
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=117.85 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=78.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCc--cccc------------ccceeEEEE--EEEEEec--------CcEEEEEEEeCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEF--EKKY------------EPTIGVEVH--PLDFFTN--------CGKIRFYCWDTA 70 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~--~~~~------------~~~~~~~~~--~~~~~~~--------~~~~~~~~~D~~ 70 (173)
+|+++|..++|||||+++|+...- .... ....|.+.. ....... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 789999999999999999874321 1000 001122221 1222222 347889999999
Q ss_pred CcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
|++.|......+++.+|++++|+|+.++.+.+.. ..+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCcc
Confidence 9999999999999999999999999987544432 22233322 378999999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=118.43 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCc----chhh---ccCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGL----RDGY---YIHG 86 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~----~~~~---~~~~ 86 (173)
.+.++|.||+|||||++.+...+. ...+..-+|..+....+. ++...+.+-|+||.-+...+ -..| +..+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 578999999999999999665443 223333334433322222 23334899999996544333 3334 4568
Q ss_pred CEEEEEEECCCh---hhhhcHHHHHHHH---hhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcC-CcEEEEccCCCCC
Q 030693 87 QCAIIMFDVTAR---LTYKNVPTWHRDL---CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYN 159 (173)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~---~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 159 (173)
..++||+|++.. +-++.++.+..++ .+...+.|.++|+||+|+++.+... ..++++... ..++++||+.+++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcCCCcEEEeeeccccc
Confidence 999999999987 5555555544444 4445689999999999997433221 345555554 3489999999999
Q ss_pred hHHHHHHHHHH
Q 030693 160 FEKPFLYLARK 170 (173)
Q Consensus 160 i~~~~~~i~~~ 170 (173)
+.++++.|.+.
T Consensus 355 l~~ll~~lr~~ 365 (366)
T KOG1489|consen 355 LEELLNGLREL 365 (366)
T ss_pred hHHHHHHHhhc
Confidence 99999988654
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=114.30 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=93.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeE---EEEEEEEEecCcEEEEEEEeCCCcccccCcchhh-----cc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----YI 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~-----~~ 84 (173)
++||+++|.+|+|||||+|.+++.........+.+. +.....+.. .....+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999998775443322222221 111111111 122468999999976433333333 56
Q ss_pred CCCEEEEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccccc---------cHH----HH----HHHHHc-
Q 030693 85 HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQV---------KAK----QV----TFHRKK- 145 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~----~~----~~~~~~- 145 (173)
++|+++++.+.. +... ..++..+.+. +.|+++|+||+|+..... ..+ .. ......
T Consensus 80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISSTR----FSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCCC----CCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 789988874422 2222 2455666554 789999999999843111 111 11 111121
Q ss_pred --CCcEEEEccC--CCCChHHHHHHHHHHhh
Q 030693 146 --NLQYYEISAK--SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 146 --~~~~~~~S~~--~~~~i~~~~~~i~~~i~ 172 (173)
...+|.+|+. .+.++..+.+.+...+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 2368899998 67899999999988764
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-18 Score=128.91 Aligned_cols=147 Identities=14% Similarity=0.060 Sum_probs=99.3
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCC------ccc--------ccccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE------FEK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
...+.++|+++|.+++|||||+++|+... ... ......|.+.......++.....+.++|+||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 45667999999999999999999988421 110 1122345555544444555567889999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc-cH----HHHHHHHHc---
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-KA----KQVTFHRKK--- 145 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~----~~~~~~~~~--- 145 (173)
|.......+..+|++++|+|+.+...-+. ..++..+... ++| +++++||+|+.+.+. .+ +...+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 87777777889999999999987643222 2233333333 778 778999999975321 11 222333332
Q ss_pred --CCcEEEEccCCCC
Q 030693 146 --NLQYYEISAKSNY 158 (173)
Q Consensus 146 --~~~~~~~S~~~~~ 158 (173)
+.+++++|+.++.
T Consensus 234 ~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 234 GDDIPIISGSALLAL 248 (478)
T ss_pred cCcceEEEEEccccc
Confidence 5679999998875
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=127.68 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=102.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCC--ccc---------------------------ccccceeEEEEEEEEEecCc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
..+.++|+++|..++|||||+.+|+... ... ......|.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 4567999999999999999999987421 000 00112244444444455667
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhh-------cHHHHHHHHhhhcCCCC-EEEEEeCCCCccc
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 132 (173)
...+.++|+||+++|.......+..+|++++|+|+++.. ++ .....+..... .++| +++++||+|+.+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDATTP 160 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCCch
Confidence 789999999999999988888999999999999998742 21 12222222222 2665 7889999998631
Q ss_pred c--------ccHHHHHHHHHcC-----CcEEEEccCCCCChHH
Q 030693 133 Q--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (173)
Q Consensus 133 ~--------~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 162 (173)
. ...+...++.+.+ ++++++|+++|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 1223445555554 6799999999999853
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=119.35 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=109.9
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc--cccCc------
Q 030693 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--KFGGL------ 78 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--~~~~~------ 78 (173)
+..+.....|+|.|.||+|||||++.+.+.+ ++. .+.+-+|-......++.....++++||||.= .....
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEv-A~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~q 239 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEV-APYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQ 239 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCC-Ccc-CCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHH
Confidence 3445566889999999999999999965544 332 4444344444455666677799999999931 11111
Q ss_pred chhhccC-CCEEEEEEECCChh--hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHHHcCCcEEEEcc
Q 030693 79 RDGYYIH-GQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISA 154 (173)
Q Consensus 79 ~~~~~~~-~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~S~ 154 (173)
.-..+++ .++++|++|.+... +.+.-..++..+..... .|+++|+||+|..+.....+.. ......+.....+++
T Consensus 240 Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~ 318 (346)
T COG1084 240 AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISA 318 (346)
T ss_pred HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceee
Confidence 1112222 68999999999643 55555667888887765 8999999999998755444433 344445556788999
Q ss_pred CCCCChHHHHHHHHHH
Q 030693 155 KSNYNFEKPFLYLARK 170 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~ 170 (173)
..+.+++.+-+.+...
T Consensus 319 ~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 319 TKGCGLDKLREEVRKT 334 (346)
T ss_pred eehhhHHHHHHHHHHH
Confidence 9999988877766554
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=119.73 Aligned_cols=140 Identities=17% Similarity=0.289 Sum_probs=89.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccc----------cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-----
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----- 77 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----- 77 (173)
.++|+++|.+|+|||||+|+|+....... ..++.+.+.....+..++..+.+.+|||||......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999887765432 234444445445555566778999999999433211
Q ss_pred ---------------------cchhhcc--CCCEEEEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcccc
Q 030693 78 ---------------------LRDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (173)
Q Consensus 78 ---------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (173)
.+...+. .+|+++|+++.+.. .+... ...+..+. .++|+++|+||+|+....
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHH
Confidence 1112333 36777777776642 12222 22333333 378999999999985422
Q ss_pred ----ccHHHHHHHHHcCCcEEEEccCC
Q 030693 134 ----VKAKQVTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~S~~~ 156 (173)
......+.+..+++.++......
T Consensus 160 e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 160 ELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 22233466777888888766543
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-18 Score=127.43 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC--ccc------------cc-----------------ccceeEEEEEEEEEecCcEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGE--FEK------------KY-----------------EPTIGVEVHPLDFFTNCGKI 62 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~--~~~------------~~-----------------~~~~~~~~~~~~~~~~~~~~ 62 (173)
+||+++|..++|||||+++|+... ... .. ....|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999986321 110 00 00113334333334444567
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--c----H
Q 030693 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--K----A 136 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~----~ 136 (173)
.+.++||||++.|.......+..+|++++|+|+.....-+....+ .+.......++++++||+|+.+... . .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~--~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS--YIASLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH--HHHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence 899999999998876666678899999999999866432222221 1222222345889999999865221 1 1
Q ss_pred HHHHHHHHcC---CcEEEEccCCCCChHH
Q 030693 137 KQVTFHRKKN---LQYYEISAKSNYNFEK 162 (173)
Q Consensus 137 ~~~~~~~~~~---~~~~~~S~~~~~~i~~ 162 (173)
+...+....+ ++++++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1112333333 5699999999999875
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=121.15 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=105.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcc--cccccceeEEEEEEEEEecCcEEEEEEEeCCCccc--ccCcchhh----
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGY---- 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~---- 82 (173)
..-..|.++|..|+|||||+|++...... .....|...+..... +. .+..+.+.||.|.-+ ...+...|
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~--l~-~g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIE--LG-DGRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEE--eC-CCceEEEecCccCcccCChHHHHHHHHHH
Confidence 34578999999999999999997744332 222234333333333 33 256788999999432 11222222
Q ss_pred --ccCCCEEEEEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCC
Q 030693 83 --YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (173)
Q Consensus 83 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (173)
...+|+++.|+|++++.....+....+.+.+. ..+.|+++|.||+|+....... ........ ..+.+||++|.|
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~--~~~~~~~~-~~v~iSA~~~~g 343 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEIL--AELERGSP-NPVFISAKTGEG 343 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhh--hhhhhcCC-CeEEEEeccCcC
Confidence 35799999999999997777776666666654 3578999999999976544311 11111122 689999999999
Q ss_pred hHHHHHHHHHHhh
Q 030693 160 FEKPFLYLARKLA 172 (173)
Q Consensus 160 i~~~~~~i~~~i~ 172 (173)
++.+++.|...+.
T Consensus 344 l~~L~~~i~~~l~ 356 (411)
T COG2262 344 LDLLRERIIELLS 356 (411)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=123.38 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=104.5
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcc--------------cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|..++|||||+++|+..... .......|.+.......+......+.++||||+..|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356799999999999999999998752110 011113455655555555555678899999999887
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEE-EEEeCCCCcccccc-----HHHHHHHHHc----
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVK-----AKQVTFHRKK---- 145 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~-----~~~~~~~~~~---- 145 (173)
.......+..+|++++|+|+..+..-+ ....+..+... ++|.+ +++||+|+.+.... .+...+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 766666778999999999998753222 22233333333 78875 58999999742211 1222333332
Q ss_pred -CCcEEEEccCCCC----------ChHHHHHHHHH
Q 030693 146 -NLQYYEISAKSNY----------NFEKPFLYLAR 169 (173)
Q Consensus 146 -~~~~~~~S~~~~~----------~i~~~~~~i~~ 169 (173)
+++++++|++++. ++.++++.|.+
T Consensus 166 ~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~ 200 (396)
T PRK00049 166 DDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS 200 (396)
T ss_pred cCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence 4689999999875 46677777765
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=120.02 Aligned_cols=115 Identities=24% Similarity=0.238 Sum_probs=80.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh--CCccc--------------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
+|+++|.+++|||||+++++. +.... ......|++.......+......+.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999864 21100 00112244444444444445678999999999888888
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030693 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
+..+++.+|++++|+|+.+...-+. ...+..+... ++|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 8889999999999999987542222 2333334333 7899999999999764
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=120.27 Aligned_cols=143 Identities=14% Similarity=0.143 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccc------c----------ceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYE------P----------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
+|+++|.+|+|||||+++++......... . ..+.+.......+....+.+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999987432110000 0 0011111112223335578999999999888777
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEE--EEccCC
Q 030693 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY--EISAKS 156 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~S~~~ 156 (173)
+..+++.+|++++|+|+++....... ..+..+... ++|.++++||+|+...........+....+..++ .+...+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~~--~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADEA--GIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 88889999999999999976543322 222333333 7899999999999875433333344444454443 333444
Q ss_pred CCCh
Q 030693 157 NYNF 160 (173)
Q Consensus 157 ~~~i 160 (173)
+.++
T Consensus 158 ~~~~ 161 (268)
T cd04170 158 GDDF 161 (268)
T ss_pred CCce
Confidence 4443
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.8e-18 Score=128.82 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=95.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCC--cccc-----------cc------------------cceeEEEEEEEEEec
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK-----------YE------------------PTIGVEVHPLDFFTN 58 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~-----------~~------------------~~~~~~~~~~~~~~~ 58 (173)
..+.++|+++|..++|||||+++|+... .... .. ...|.+.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3567999999999999999999987432 1100 00 011233333333344
Q ss_pred CcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cH
Q 030693 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA 136 (173)
Q Consensus 59 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~ 136 (173)
.....+.++||||++.|.......+..+|++++|+|+.....-+....+ .+.......|+++++||+|+.+... ..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLGIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhCCCceEEEEEeeccccchhHHHH
Confidence 4567889999999988865555557899999999999865322222211 1222222347899999999874211 11
Q ss_pred HHH----HHHHHc----CCcEEEEccCCCCChHHH
Q 030693 137 KQV----TFHRKK----NLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 137 ~~~----~~~~~~----~~~~~~~S~~~~~~i~~~ 163 (173)
+.. .+.... ..+++++||++|+|+.++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 111 222222 467999999999998763
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=124.85 Aligned_cols=151 Identities=20% Similarity=0.242 Sum_probs=99.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhh--CCccc---------------------------ccccceeEEEEEEEEEecCc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
..+.++|+++|..++|||||+.+|+. +.... ......|.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 35679999999999999999999875 11110 00112244544444455667
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hh---hcHHHHHHHHhhhcCCCC-EEEEEeCCCCcc--
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY---KNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-- 131 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~-- 131 (173)
...+.++|+||+++|.......+..+|++++|+|+.... .+ ......+..+... ++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVN 161 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccch
Confidence 789999999999999888888889999999999998753 11 1122222223222 666 678999999532
Q ss_pred --cc----ccHHHHHHHHHc-----CCcEEEEccCCCCChHH
Q 030693 132 --RQ----VKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 132 --~~----~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
.. ...+..+..... +++++++|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11 112222333332 36799999999999864
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-17 Score=123.18 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=102.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC-----Ccc---------cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG-----EFE---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|..++|||||+++|..- ... .......|++.......+......+.++||||+++|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456799999999999999999997521 100 001122455666555556666678999999999887
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccccH-----HHHHHHHHc----
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK---- 145 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~-----~~~~~~~~~---- 145 (173)
..........+|++++|+|+.+...-+. ...+..+... ++| +++++||+|+.+..... +..++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~ 214 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG 214 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6666666678999999999986532221 2223333333 788 57889999997522111 111222221
Q ss_pred -CCcEEEEccC---CCCC-------hHHHHHHHHHH
Q 030693 146 -NLQYYEISAK---SNYN-------FEKPFLYLARK 170 (173)
Q Consensus 146 -~~~~~~~S~~---~~~~-------i~~~~~~i~~~ 170 (173)
.++++++|+. ++.| +.++++++.+.
T Consensus 215 ~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 215 DEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 3678888876 4544 67888877654
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=123.04 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=119.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCc--cc-----------ccccceeEEEEEEEE---EecCcEEEEEEEeCCCccccc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEF--EK-----------KYEPTIGVEVHPLDF---FTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~--~~-----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~G~~~~~ 76 (173)
--++.|+-....|||||..+|+.-.- .. ......|+|....+. ..++..+.+.++|||||-.|+
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 35789999999999999999874211 00 111233455444332 223566999999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHHHHHHcCCcEEEEc
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~S 153 (173)
.--..-+..++++++|+|++..-..+....++..+.. +..+|.|+||+|++...... ...+.......+.+.+|
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vS 216 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVS 216 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEE
Confidence 8888888999999999999998777777776666655 88899999999998755433 33455556667899999
Q ss_pred cCCCCChHHHHHHHHHHh
Q 030693 154 AKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i 171 (173)
|++|.|+.+++++|++.+
T Consensus 217 AK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 217 AKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eccCccHHHHHHHHHhhC
Confidence 999999999999999876
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-17 Score=130.95 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=82.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcc-------------cccc---cceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-------------KKYE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
+..+|+++|..++|||||+++|+...-. ..+. ...+.+.......+......+.+|||||+..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 4579999999999999999998742110 0000 01122222222223335678999999999998
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
...+..+++.+|++++|+|+++..+.+....| ..+... ++|+++++||+|+..
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~--~~p~iiviNK~D~~~ 139 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY--GIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc--CCCEEEEEECCCCCC
Confidence 88889999999999999999987655543333 334333 889999999999864
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-17 Score=129.06 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=94.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCc--ccc-----------cc---c---------------ceeEEEEEEEEEec
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK-----------YE---P---------------TIGVEVHPLDFFTN 58 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~-----------~~---~---------------~~~~~~~~~~~~~~ 58 (173)
..+.++|+++|.+++|||||+++|+...- ... .. . ..|.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34568999999999999999999875321 100 00 0 11233333233344
Q ss_pred CcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc--ccccH
Q 030693 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVKA 136 (173)
Q Consensus 59 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~ 136 (173)
.....+.++||||++.|.......+..+|++++|+|+..+..-+.... +..+.. ....|+++++||+|+.+ .....
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~-~~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASL-LGIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHH-hCCCeEEEEEEecccccchhHHHH
Confidence 455678899999998876555556789999999999986543222221 112222 22357889999999864 11111
Q ss_pred ----HHHHHHHHcC---CcEEEEccCCCCChHH
Q 030693 137 ----KQVTFHRKKN---LQYYEISAKSNYNFEK 162 (173)
Q Consensus 137 ----~~~~~~~~~~---~~~~~~S~~~~~~i~~ 162 (173)
+..++....+ .+++++||++|.|+.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1122333434 4689999999999874
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-17 Score=125.64 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=87.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh--CCccc----------c--------cccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK----------K--------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~--~~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
+..+|+++|.+++|||||+++|+. +.... . .....|.+.......+....+.+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 457999999999999999999863 11100 0 001113333333334445678899999999
Q ss_pred cccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC
Q 030693 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (173)
+..|......+++.+|++++|+|+++.-... ...++..... .++|+++++||+|+.......-..++....+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~--~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL--RDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh--cCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 9998887777889999999999998753221 2333333333 38999999999998765433222333333443
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=119.50 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=107.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC---cEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
+..=|.++|+...|||||+..+...+... ...-|.|...--+.+.. ..-.+.|+|||||+.|..+...-..-+|.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~--~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccc--ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 34568999999999999999966544322 23334554443333332 23578999999999999999998899999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccccccHHHHHHHHHcC---------CcEEEEccCCCC
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN---------LQYYEISAKSNY 158 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~ 158 (173)
+++|+++++.-- .+..+.+.+. ..++|+++++||+|.++.++.....++. +++ ..++++||++|+
T Consensus 82 aILVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~-~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 82 AILVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQ-EYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHH-HcCCCHhhcCCceEEEEeeccCCC
Confidence 999999998532 1222333332 1499999999999998654433322222 222 568999999999
Q ss_pred ChHHHHHHHHH
Q 030693 159 NFEKPFLYLAR 169 (173)
Q Consensus 159 ~i~~~~~~i~~ 169 (173)
|++++++.++-
T Consensus 157 Gi~eLL~~ill 167 (509)
T COG0532 157 GIDELLELILL 167 (509)
T ss_pred CHHHHHHHHHH
Confidence 99999988764
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-16 Score=110.31 Aligned_cols=152 Identities=18% Similarity=0.100 Sum_probs=104.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-------CcchhhccC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLRDGYYIH 85 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~ 85 (173)
-.+++++|.|++|||||++.| ++..++. ....-+|.......++.++..+++.|+||.-... ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~L-Tnt~sev-a~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKL-TNTKSEV-ADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHH-hCCCccc-cccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 468999999999999999994 4544443 2233356666666677788999999999843221 234456889
Q ss_pred CCEEEEEEECCChhh-hhcHHHHHHH------------------------------------------------------
Q 030693 86 GQCAIIMFDVTARLT-YKNVPTWHRD------------------------------------------------------ 110 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s-~~~~~~~~~~------------------------------------------------------ 110 (173)
||++++|+|+..... .+.+.+++..
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999996543 2222222221
Q ss_pred ------------HhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 111 ------------LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 111 ------------~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+......+|.++|.||+|+...+ +...+.+.. ..+.+||..+.|++++.+.|.+.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e---~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE---ELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH---HHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 11111246999999999998733 233333333 789999999999999999998764
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=116.63 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC--ccc-----------ccccceeEEEEEEEE----Ee-cCcEEEEEEEeCCCcccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGE--FEK-----------KYEPTIGVEVHPLDF----FT-NCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~--~~~-----------~~~~~~~~~~~~~~~----~~-~~~~~~~~~~D~~G~~~~ 75 (173)
.+..++-.-..|||||..|++... ... ......|+|.....+ .. ++..+.++++|||||-.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 467888889999999999987521 111 011122444433322 22 457799999999999988
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC---cEEEE
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI 152 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~ 152 (173)
.--...-+..|.++++|+|++..-..+.+.+.+..+.. +.-++.|+||+||+...+..-..+...-.++ ..+.+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~ 166 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV 166 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence 87777777889999999999998777777777777766 8889999999999987665555555555554 47899
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030693 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|.|+++++++|.+.+
T Consensus 167 SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 167 SAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred ecccCCCHHHHHHHHHhhC
Confidence 9999999999999999876
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=116.05 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=105.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC--Cccc---------------------------ccccceeEEEEEEEEEecCc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
..+.++++++|+..+|||||+.+|+.. .... ......|.|...-...++..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 456799999999999999999997742 1110 00112255555555566667
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---h--hhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-c--
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---T--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-R-- 132 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~-- 132 (173)
.+.++++|+||+..|-........+||++|+|+|+.+.+ + ..........+.....-..+++++||+|+.+ +
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 789999999999988888888888999999999999874 1 2233344444444443445889999999986 1
Q ss_pred ---cccHHHHHHHHHc-----CCcEEEEccCCCCChHH
Q 030693 133 ---QVKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 133 ---~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
+...+...+.+.. +++|+++|+..|+|+.+
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 1122222333333 36699999999999864
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-16 Score=112.75 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=54.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcc------cccccceeEEEEEEEEE---------------ecC-cEEEEEEEeCCCc-
Q 030693 16 LVIVGDGGTGKTTFVKRHLTGEFE------KKYEPTIGVEVHPLDFF---------------TNC-GKIRFYCWDTAGQ- 72 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~D~~G~- 72 (173)
|+++|.+++|||||++++...... ....|+.|......... .++ ..+++++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999998766532 12233444333211100 112 3368999999997
Q ss_pred ---ccccCcchhh---ccCCCEEEEEEECC
Q 030693 73 ---EKFGGLRDGY---YIHGQCAIIMFDVT 96 (173)
Q Consensus 73 ---~~~~~~~~~~---~~~~~~~i~v~d~~ 96 (173)
++++.+...+ ++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4455554554 88999999999997
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-17 Score=120.40 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=110.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-C--------cchhhc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-G--------LRDGYY 83 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~--------~~~~~~ 83 (173)
.++|+++|+||+|||||+|.|. +.......|-.|+|++.++..++-.++++.+.||+|..+-. . ..+..+
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~-~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALS-REDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHh-cCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 4899999999999999999955 55556678889999999999888888999999999976511 1 233347
Q ss_pred cCCCEEEEEEECCC--hhhhhcHHHHHHHHhhhc-------CCCCEEEEEeCCCCccccccHH--HHHHHHH---cCC-c
Q 030693 84 IHGQCAIIMFDVTA--RLTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNRQVKAK--QVTFHRK---KNL-Q 148 (173)
Q Consensus 84 ~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~---~~~-~ 148 (173)
..+|++++|+|+.. -++...+...+......+ ...|++++.||.|+........ ...+... ... .
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i 426 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPI 426 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccce
Confidence 78999999999943 333223223333332221 1368999999999876421111 1111111 122 3
Q ss_pred EEEEccCCCCChHHHHHHHHHHh
Q 030693 149 YYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 149 ~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+.++|+++++|+..+..++.+.+
T Consensus 427 ~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 427 VVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred EEEeeechhhhHHHHHHHHHHHH
Confidence 45699999999999999988765
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=122.71 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=82.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh-CCcccc-------------------cccceeEEEEEEEEEecCcEEEEEEEeCC
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT-GEFEKK-------------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (173)
.+..+|+++|.+++|||||+++++. ...... .....|.+.......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3467999999999999999999763 211100 00122344444444555567899999999
Q ss_pred CcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030693 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
|+..|.......++.+|++++|+|+++.-. .....++..... .++|+++++||+|+...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccCC
Confidence 999888777778899999999999987421 112333333333 37899999999998753
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-16 Score=106.51 Aligned_cols=156 Identities=12% Similarity=-0.000 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------c---chhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------L---RDGY 82 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~---~~~~ 82 (173)
++|+++|.+|+|||||+|.+++...........+.+...........+..+.++||||...... + ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999886654322211223333222222222456899999999654321 1 1112
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcC---CCCEEEEEeCCCCcccc--------ccHHHHHHHHHcCCcEEE
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQ--------VKAKQVTFHRKKNLQYYE 151 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~ 151 (173)
..+.|++++|+++... +- .-...++.+.+.+. -.++++++|+.|..... .......+....+-.++.
T Consensus 81 ~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 4578999999998862 21 11233444444322 35788999999965422 122334455555656655
Q ss_pred Ecc-----CCCCChHHHHHHHHHHh
Q 030693 152 ISA-----KSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~-----~~~~~i~~~~~~i~~~i 171 (173)
.+. ..+.++.++++.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHH
Confidence 554 45678999998887655
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=100.56 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=66.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---------cchhhccC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIH 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~~~~~~~ 85 (173)
+|+++|.+|+|||||+|+|+...... .....+.+.......+......+.++||||...... .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK-VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE-ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc-ccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 68999999999999999988643211 122222233222222122445667999999643211 12223478
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeC
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK 126 (173)
+|++++|+|..++.. +.....+..+. .+.|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 999999999877422 22334444453 48999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=119.71 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=100.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCc---ccccc--c--ceeEEEEEE----------EE-EecC------------
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF---EKKYE--P--TIGVEVHPL----------DF-FTNC------------ 59 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~--~--~~~~~~~~~----------~~-~~~~------------ 59 (173)
....++|.++|....|||||+.+|.+-.. .+... - ..|...... .+ ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 35579999999999999999999664211 11100 0 111111100 00 0000
Q ss_pred ----cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCCh-hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 60 ----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 60 ----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
....+.++|+||++.|.......+..+|++++|+|+.++ ...+. ...+ .+.....-.|+++++||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl-~i~~~lgi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHL-AAVEIMKLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHH-HHHHHcCCCcEEEEEecccccCHHH
Confidence 024689999999998877777777899999999999874 22122 1222 2222222346899999999975332
Q ss_pred cHHH----HHHHHH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 135 KAKQ----VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 135 ~~~~----~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
..+. .++... ...+++++||++|+|++++++.|.+.+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 2222 222222 357899999999999999999988543
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=106.88 Aligned_cols=116 Identities=17% Similarity=0.263 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe-cCcEEEEEEEeCCCcccccCcchh---hccCCCE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDG---YYIHGQC 88 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~---~~~~~~~ 88 (173)
.-.|+++|+.|+|||+|..+|..+...+.+.+. .... .... ....-.+.++|+||+++.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 356899999999999999999988665543333 2121 1111 223457899999999988864333 4778999
Q ss_pred EEEEEECCC-hhhhhcHHH-HHHHHhhh---cCCCCEEEEEeCCCCccc
Q 030693 89 AIIMFDVTA-RLTYKNVPT-WHRDLCRV---CENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 89 ~i~v~d~~~-~~s~~~~~~-~~~~~~~~---~~~~p~ivv~nK~Dl~~~ 132 (173)
+|||+|.+. ...+.+... ++..+... ....|++|+.||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999984 334444443 33333222 247899999999998653
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-16 Score=123.72 Aligned_cols=117 Identities=21% Similarity=0.162 Sum_probs=81.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC--Cccc--cc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
+..+|+++|.+++|||||+++|+.. .... .. ....|++.......+......+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 4578999999999999999998742 1100 00 012234444333334445678999999999888
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
...+...++.+|++++|+|+.+....+.. ..+..+... ++|.++++||+|+..
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 77888889999999999999876433322 233333333 789999999999874
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=125.16 Aligned_cols=143 Identities=19% Similarity=0.128 Sum_probs=93.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC--Cccc--cc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
+-.+|+++|.+++|||||+++|+.. .... .. ....|++.......+......+.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 3468999999999999999998632 1100 00 012344444444444445678999999999988
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC----cEEE
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYE 151 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~ 151 (173)
...+..+++.+|++++|+|+.+....+.. ..+..+... ++|+++++||+|+...........+....+. ..++
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~--~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY--EVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLP 165 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 88888889999999999999976544332 233334333 7899999999999864422222233333332 1355
Q ss_pred EccCCC
Q 030693 152 ISAKSN 157 (173)
Q Consensus 152 ~S~~~~ 157 (173)
+|+..+
T Consensus 166 is~~~~ 171 (689)
T TIGR00484 166 IGAEDN 171 (689)
T ss_pred cccCCC
Confidence 665544
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=109.42 Aligned_cols=160 Identities=14% Similarity=0.222 Sum_probs=105.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc-------ccCcchhh
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-------FGGLRDGY 82 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~ 82 (173)
..++++|+++|..|+||||++|+|..+...+...-..+.+...... .....-.+.+||+||-+. ++.....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~-~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR-LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-hhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 4567999999999999999999988655433221111222211111 112335789999999654 55567778
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc---------cccHHHHHHHHH---------
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR---------QVKAKQVTFHRK--------- 144 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~~~~--------- 144 (173)
+.+.|+++++.+..++.---+. ++++.+....-+.++++++|.+|.... .......++..+
T Consensus 115 l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDE-DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhhccEEEEeccCCCccccCCH-HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988633332 345555555456899999999996532 111111121111
Q ss_pred -cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 145 -KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 145 -~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.--+++..+...+.|++++..++++.+
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 123577888899999999999998765
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=114.26 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=106.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEE--EEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+..-|-++|....|||||+..|.....- ..+.-|+|...- .+.++ .+-.++|.|||||..|..++..-..-+|.+
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VA--A~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVA--AGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCcee--hhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 4456889999999999999996544332 133334443322 23333 447899999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHH------Hc--CCcEEEEccCCCCCh
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHR------KK--NLQYYEISAKSNYNF 160 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~--~~~~~~~S~~~~~~i 160 (173)
++|+.++|.-- .+..+.|.... .++|+++++||+|.+...+..-..++.. .+ ..+.+++||++|+|+
T Consensus 229 VLVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 229 VLVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 99999998531 22334444432 5999999999999876443222223322 12 257899999999999
Q ss_pred HHHHHHHHH
Q 030693 161 EKPFLYLAR 169 (173)
Q Consensus 161 ~~~~~~i~~ 169 (173)
+.+-+++.-
T Consensus 305 ~~L~eaill 313 (683)
T KOG1145|consen 305 DLLEEAILL 313 (683)
T ss_pred HHHHHHHHH
Confidence 999988764
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=108.86 Aligned_cols=149 Identities=20% Similarity=0.236 Sum_probs=105.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCc-------------cc------------------ccccceeEEEEEEEEEecC
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-------------EK------------------KYEPTIGVEVHPLDFFTNC 59 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~~ 59 (173)
...+|++.+|...-||||||.||+.+.. .. ......|+|++.-...+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3468999999999999999999886311 00 0111235666655555566
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc--c----c
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--R----Q 133 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~----~ 133 (173)
...+|.+-|||||++|..+...-...||++|+++|+... ..+-.+-...+.....-..+++++||+||.+ + +
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHH
Confidence 778999999999999999888888999999999999543 2222223333333333456899999999987 2 2
Q ss_pred ccHHHHHHHHHcCC---cEEEEccCCCCChH
Q 030693 134 VKAKQVTFHRKKNL---QYYEISAKSNYNFE 161 (173)
Q Consensus 134 ~~~~~~~~~~~~~~---~~~~~S~~~~~~i~ 161 (173)
...+-..++.+.+. .++++||..|+|+.
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 22233467777664 68999999999875
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.7e-15 Score=104.98 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEec-CcEEEEEEEeCCCccc----ccCcchhh---ccC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEK----FGGLRDGY---YIH 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~----~~~~~~~~---~~~ 85 (173)
-|.++|.|++|||||++.+...+.. ..|+ -+|..+.-..+. ...-.|.+-|+||.-+ ..-+-..| +..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYp---FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYP---FTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCc---cccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 3778999999999999996644321 1111 122222111111 3445789999999432 22344444 446
Q ss_pred CCEEEEEEECCChh---hhhcHHHHHHHHhh---hcCCCCEEEEEeCCCCcccccc-HHH-HHHHHHcCCcEE-EEccCC
Q 030693 86 GQCAIIMFDVTARL---TYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNRQVK-AKQ-VTFHRKKNLQYY-EISAKS 156 (173)
Q Consensus 86 ~~~~i~v~d~~~~~---s~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~-~~~-~~~~~~~~~~~~-~~S~~~ 156 (173)
+.++++|+|++..+ -.++......++.. ...++|.++|+||+|+...... +.. ..+....+...+ ++|+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 89999999999543 23333333444444 4468999999999996543322 222 233333343322 299999
Q ss_pred CCChHHHHHHHHHHh
Q 030693 157 NYNFEKPFLYLARKL 171 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i 171 (173)
++|++++...+.+.+
T Consensus 318 ~~g~~~L~~~~~~~l 332 (369)
T COG0536 318 REGLDELLRALAELL 332 (369)
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999998887754
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-14 Score=110.38 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=70.2
Q ss_pred EEEEEEeCCCccccc-C----cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--
Q 030693 62 IRFYCWDTAGQEKFG-G----LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~-~----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-- 134 (173)
..+.+.||||..... . .....+..+|++++|+|.....+..+ ....+.+.+...+.|+++|+||+|+.++..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 356789999975421 1 23346889999999999987433222 223344444322369999999999865322
Q ss_pred cHHHHHHHH----Hc---CCcEEEEccCCCCChHHHHHHHHH
Q 030693 135 KAKQVTFHR----KK---NLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 135 ~~~~~~~~~----~~---~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.....++.. .. ...++++||+.|.|++++++.|.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 222223221 22 236899999999999999999876
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-15 Score=118.22 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=74.4
Q ss_pred EcCCCCCHHHHHHHHhhCCcc--c--cc------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhh
Q 030693 19 VGDGGTGKTTFVKRHLTGEFE--K--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (173)
Q Consensus 19 ~G~~~~GKStli~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 82 (173)
+|++++|||||+++|+...-. . .. ....|.+.......+....+.+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999998532110 0 00 0012233332223333356889999999998877777888
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
+..+|++++|+|++......... .+..+.. .++|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET-VWRQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH--cCCCEEEEEECCCCCC
Confidence 99999999999999865444332 2233333 3789999999999764
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.4e-15 Score=117.32 Aligned_cols=143 Identities=19% Similarity=0.135 Sum_probs=92.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh--CCcccc--c------------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--Y------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~--~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
+-.+|+++|.+++|||||+++|+. +..... . ....|++.......+......+.++||||+..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 356999999999999999999873 211100 0 012344444433444445678999999999877
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC----cEEE
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYE 151 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~ 151 (173)
.......+..+|++++|+|+...-..+.. ..+..+... ++|.++++||+|+.+........++....+. ..++
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~~--~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADKY--KVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLP 165 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEec
Confidence 66666778899999999998876443332 223334343 7899999999999865433322333333332 2356
Q ss_pred EccCCC
Q 030693 152 ISAKSN 157 (173)
Q Consensus 152 ~S~~~~ 157 (173)
+|+..+
T Consensus 166 isa~~~ 171 (693)
T PRK00007 166 IGAEDD 171 (693)
T ss_pred CccCCc
Confidence 666554
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-14 Score=105.78 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccc-cc-----ccceeEEEEEEEE---------------Eec-CcEEEEEEEeCCC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLDF---------------FTN-CGKIRFYCWDTAG 71 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~-----~~~~~~~~~~~~~---------------~~~-~~~~~~~~~D~~G 71 (173)
++|+++|.||+|||||+++|....... .+ .|..|........ ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999987665432 11 1222221110000 001 1236789999999
Q ss_pred c----ccccCcchhh---ccCCCEEEEEEECC
Q 030693 72 Q----EKFGGLRDGY---YIHGQCAIIMFDVT 96 (173)
Q Consensus 72 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 96 (173)
. .....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3334444455 88999999999996
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-14 Score=103.93 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=79.0
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCCh----------hhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
....+.+||++|+...+..|.+++.+++++++|+|+++. ..+.+....+..+... ..++|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 467899999999999999999999999999999999974 2333333333333332 2589999999999
Q ss_pred CCcccc------------------ccHHHHHHHH-----H-----cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 128 DVKNRQ------------------VKAKQVTFHR-----K-----KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~------------------~~~~~~~~~~-----~-----~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+-.+. .......+.. . ..+-...++|.+..++..+|+.+.+.++
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~ 311 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL 311 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence 963211 1111222111 1 2234567889999999999998887664
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=92.10 Aligned_cols=136 Identities=19% Similarity=0.141 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc----hhhccCCCEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI 90 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----~~~~~~~~~~i 90 (173)
||+++|..|+|||||.+++.+... .+..|..+++... -.+||||.---...| ......+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999544332 2344444333211 136999842111111 22345789999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|-.++++++.-. ..+... -..|+|-+++|.||++....+...++..+-|. ++|++|+.++.|++++++.+..
T Consensus 70 ~v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred eeecccCccccCC-----cccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 9999998864221 122222 25679999999999976666666677777665 6899999999999999998864
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-15 Score=117.93 Aligned_cols=117 Identities=25% Similarity=0.181 Sum_probs=80.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCC---------------cccc---cccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGE---------------FEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
...+|+++|+.++|||||+++|+... +... +..|............++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45799999999999999999987421 0000 11122222222223355677899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
.|.......++.+|++++|+|+.+.-..+.. ..+..... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH--cCCCEEEEEEChhccc
Confidence 9887788889999999999999875322222 22222222 3778899999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=102.73 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=71.5
Q ss_pred EEEEEeCCCcccc---cCcchhhccC-----CCEEEEEEECCChhhhhcH--HHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030693 63 RFYCWDTAGQEKF---GGLRDGYYIH-----GQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 63 ~~~~~D~~G~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
.+.+||+||+.+. +..+..+++. .+++++++|+.......+. ..|+........+.|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 6899999997653 3444444333 8899999999754432222 2233322222348999999999998764
Q ss_pred cccHHHHH----------------------------HHHHcC--CcEEEEccCCCCChHHHHHHHHHHh
Q 030693 133 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 133 ~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
....+... ..+..+ .+++++|++++.|+++++++|.+.+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 32222111 112223 5789999999999999999998765
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-14 Score=103.60 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=78.8
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCCh----------hhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
....+.+||.+|+...+..|.+++.+++++++|+|+++- ..+.+....+..+... ..++|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 456789999999999999999999999999999999963 2333444444444332 3689999999999
Q ss_pred CCcccc-----------------ccHHHHH-----HHHH------cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 128 DVKNRQ-----------------VKAKQVT-----FHRK------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~-----------------~~~~~~~-----~~~~------~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+..+. ....... +... ..+-.+.++|.+..++..+|+.+...++
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~ 334 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL 334 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence 964311 1111111 1111 1234567889999999999988877654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=107.89 Aligned_cols=166 Identities=14% Similarity=0.108 Sum_probs=112.3
Q ss_pred CCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc----cCcch
Q 030693 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLRD 80 (173)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~~ 80 (173)
..+..+.+.-.++++|.|++|||||++.+..... + ..+...++..-.....+..-..|+++||||.-.. +....
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-e-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-E-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhccccccccc-c-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH
Confidence 3455667788999999999999999998544332 2 2333333333333444555678999999994211 11111
Q ss_pred -----hhccCCCEEEEEEECCCh--hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-cHHH---H-HHHHHcCCc
Q 030693 81 -----GYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQ---V-TFHRKKNLQ 148 (173)
Q Consensus 81 -----~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~---~-~~~~~~~~~ 148 (173)
...+=-.+++|+.|++.. .|...-.+++..++..+.|.|.|+|+||+|+...+. .++. . .+....++.
T Consensus 238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~ 317 (620)
T KOG1490|consen 238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVK 317 (620)
T ss_pred HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCce
Confidence 111113578889999854 455555678888888888999999999999876332 2222 2 344445689
Q ss_pred EEEEccCCCCChHHHHHHHHHHhh
Q 030693 149 YYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 149 ~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+++.|+.+.+|+-++....+..++
T Consensus 318 v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 318 VVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred EEEecccchhceeeHHHHHHHHHH
Confidence 999999999999999888887664
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=96.08 Aligned_cols=108 Identities=14% Similarity=0.215 Sum_probs=62.2
Q ss_pred EEEEEEEeCCCcc-cccC-----cchhhccCC--CEEEEEEECCChhhhhcHHHHHHHHhhh-----cCCCCEEEEEeCC
Q 030693 61 KIRFYCWDTAGQE-KFGG-----LRDGYYIHG--QCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKV 127 (173)
Q Consensus 61 ~~~~~~~D~~G~~-~~~~-----~~~~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~ 127 (173)
...+.++|||||- .|.. +....+... -+++|++|.. .+-.... |.....-. ....|++++.||+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~--rs~~p~t-FMSNMlYAcSilyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTP--RSTSPTT-FMSNMLYACSILYKTKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCC--cCCCchh-HHHHHHHHHHHHHhccCCeEEEEecc
Confidence 4568899999964 3332 222223333 4555566644 3222222 22222221 1489999999999
Q ss_pred CCccccccHH------HHHHH-H---------------------HcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 128 DVKNRQVKAK------QVTFH-R---------------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 128 Dl~~~~~~~~------~~~~~-~---------------------~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
|+.+.....+ ..+.+ . ..++..+-+|+.+|.|++++|.++-..+
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 9987432111 11100 0 0245678999999999999999886653
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-14 Score=98.83 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=78.0
Q ss_pred ccccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-cHHHHHHHHHcCCcEE
Q 030693 73 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYY 150 (173)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 150 (173)
+++..+.+.+++++|.+++|+|++++. ++..+..|+..+.. .+.|+++|+||+||.+... ..+..+.....+++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~ 101 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL 101 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence 678888899999999999999999887 88899899887654 4899999999999965332 2233344456788999
Q ss_pred EEccCCCCChHHHHHHHHH
Q 030693 151 EISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~ 169 (173)
++||++|.|++++|+.+.+
T Consensus 102 ~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEecCCchhHHHHHhhhcC
Confidence 9999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=92.92 Aligned_cols=151 Identities=17% Similarity=0.242 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhcc---CCCEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---HGQCAI 90 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~~~~i 90 (173)
-.|+++|+.+||||+|.-+|..+.....+.+- +.....+.. ....++++|.||+.+.+.-...+++ .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~--gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRL--GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEee--cCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 56899999999999999998888654432221 111122222 2234899999999988766666666 689999
Q ss_pred EEEECCCh-hhhhcHHHH-HHHHhhh---cCCCCEEEEEeCCCCccccccHHHH--------HHH--H------------
Q 030693 91 IMFDVTAR-LTYKNVPTW-HRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV--------TFH--R------------ 143 (173)
Q Consensus 91 ~v~d~~~~-~s~~~~~~~-~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~--------~~~--~------------ 143 (173)
||+|...- ....+...+ +..+... ....|++++-||.|+.-....+..+ ... +
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 99998742 233333333 3333332 2367899999999985321111000 000 0
Q ss_pred ------------------HcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 144 ------------------KKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 144 ------------------~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
...+.|.+.|++++ ++.++-+|+.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 01244788999988 899999998875
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=112.12 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=70.9
Q ss_pred EEEEeCCCcccccCcchhhccCCCEEEEEEECCCh---hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cc-----
Q 030693 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV----- 134 (173)
Q Consensus 64 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~----- 134 (173)
+.+|||||++.|..+....+..+|++++|+|+++. .+++. +..+... ++|+++++||+|+... ..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~----I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~ 601 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEA----INILRQY--KTPFVVAANKIDLIPGWNISEDEP 601 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHH----HHHHHHc--CCCEEEEEECCCCccccccccchh
Confidence 89999999999988877788889999999999863 33222 2233332 7899999999998531 10
Q ss_pred --------cHHH-HHH----------HHH---------------cCCcEEEEccCCCCChHHHHHHHHH
Q 030693 135 --------KAKQ-VTF----------HRK---------------KNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 135 --------~~~~-~~~----------~~~---------------~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.... .++ ..+ ..++++++||++|+|++++++++..
T Consensus 602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 0000 011 111 1357899999999999999988753
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-13 Score=101.29 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=106.4
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhC--------------------Ccc---------cccccceeEEEEEEEEEecC
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG--------------------EFE---------KKYEPTIGVEVHPLDFFTNC 59 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~--------------------~~~---------~~~~~~~~~~~~~~~~~~~~ 59 (173)
.+...++++++|...+|||||+.+++.. +.. ..-....|++.......++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3445799999999999999999987652 100 01112335666666666777
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hhh--cHHHHHHHHhhhcCCCCEEEEEeCCCCcc-c-
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKN-R- 132 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~- 132 (173)
....+++.|.||+..|-.....-...+|++++|+|++..+ +|+ .-.+.+..+.+...-.-++|++||+|+.+ .
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence 8889999999999999888888888999999999998542 222 11234444444444445899999999976 1
Q ss_pred ----cccHHHHHHH-HHc-----CCcEEEEccCCCCChHH
Q 030693 133 ----QVKAKQVTFH-RKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 133 ----~~~~~~~~~~-~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
+.......+. +.. .+.|++||+..|+|+..
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 2222333444 222 35799999999998753
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-13 Score=91.61 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=63.6
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCE--EEEEeCCCCccc--cccHH
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNR--QVKAK 137 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~--ivv~nK~Dl~~~--~~~~~ 137 (173)
....++++.|..-...... . -++.++.|+|+.+..+... .... .+.. ++++||+|+.+. .....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~-------qi~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGP-------GITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHh-------HhhhccEEEEEhhhccccccccHHH
Confidence 5667788888432222222 1 2688999999987665321 1112 2223 788999999852 11222
Q ss_pred HHHHHH--HcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 138 QVTFHR--KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 138 ~~~~~~--~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
..+..+ ..+.+++++|+++|+|+.++++++.+.++
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 223333 35688999999999999999999998653
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-13 Score=95.10 Aligned_cols=120 Identities=9% Similarity=0.037 Sum_probs=70.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---c-------c
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---L-------R 79 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~-------~ 79 (173)
....++|+++|.+|+|||||+|++++...... ....+.+..............+.+|||||...... . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 34579999999999999999999886553222 11111222222222223456789999999654421 1 1
Q ss_pred hhhcc--CCCEEEEEEECCChh-hhhcHHHHHHHHhhhcC---CCCEEEEEeCCCCcc
Q 030693 80 DGYYI--HGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (173)
Q Consensus 80 ~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 131 (173)
..++. ..+++++|..++... ... -...+..+.+.+. -.++++|.||+|...
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 12332 568888887666432 111 1233444443321 246899999999754
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-13 Score=96.73 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=70.2
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccc-cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc-------h
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------D 80 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~ 80 (173)
.+...++|+++|.+|+||||++|++++...... ...+.+.+....... ..+..+.++||||........ .
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~--~~G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE--ECCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 346679999999999999999999886543111 111111121112222 245789999999966432211 1
Q ss_pred hhc--cCCCEEEEEEECCChhhhhcH-HHHHHHHhhhcC---CCCEEEEEeCCCCc
Q 030693 81 GYY--IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (173)
Q Consensus 81 ~~~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~ivv~nK~Dl~ 130 (173)
.++ ...|++++|..++... +... ...+..+...+. -.++++++|++|..
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 122 2589999997665321 1111 223444443321 35689999999965
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-13 Score=98.86 Aligned_cols=154 Identities=17% Similarity=0.209 Sum_probs=97.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC----Ccc----------ccccccee---EEEEEEE-------E-EecCcEEEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG----EFE----------KKYEPTIG---VEVHPLD-------F-FTNCGKIRFYCW 67 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~----~~~----------~~~~~~~~---~~~~~~~-------~-~~~~~~~~~~~~ 67 (173)
++.|.++|+.++|||||+++|... ... +-.++..| +|..+.. + ..++...++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 588999999999999999997764 111 01233444 3333332 2 123456789999
Q ss_pred eCCCccccc--------C---------------------cchhhcc-CCCEEEEEE-ECC----ChhhhhcH-HHHHHHH
Q 030693 68 DTAGQEKFG--------G---------------------LRDGYYI-HGQCAIIMF-DVT----ARLTYKNV-PTWHRDL 111 (173)
Q Consensus 68 D~~G~~~~~--------~---------------------~~~~~~~-~~~~~i~v~-d~~----~~~s~~~~-~~~~~~~ 111 (173)
||+|...-. . -++..+. +++..++|. |.+ .++.+... ..++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999921100 0 0334455 889999988 764 22333333 3577777
Q ss_pred hhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCC--CCChHHHHHHHH
Q 030693 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLA 168 (173)
Q Consensus 112 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~i~ 168 (173)
++. ++|+++++||+|...........++...++.+++.+|+.+ .+.+..+++.++
T Consensus 177 k~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 776 9999999999995433322223356677888888888753 345666665544
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=98.07 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=109.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC--Cccc------------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEK------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 78 (173)
--+|+++-....|||||+..|+.. .|.. ......|+|+-....-+....+.+.+.|||||..|..-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 458999999999999999998742 2221 11223366666666566667789999999999999999
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHHHHH-------HcCCc
Q 030693 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHR-------KKNLQ 148 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~-------~~~~~ 148 (173)
....+.-.|++++++|+.+..--+ .+-.+..-.. .+.+-|+|+||+|.++..... +...+.. +..++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 999999999999999999753111 1111111112 277778889999998754332 3333333 34577
Q ss_pred EEEEccCCCC----------ChHHHHHHHHHHh
Q 030693 149 YYEISAKSNY----------NFEKPFLYLARKL 171 (173)
Q Consensus 149 ~~~~S~~~~~----------~i~~~~~~i~~~i 171 (173)
++..|++.|. ++..+|+.|.+.+
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 8999988764 7889999988765
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-14 Score=90.31 Aligned_cols=113 Identities=24% Similarity=0.268 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccc-cceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+|++++|..|+|||+|+.++..+.+...+. ++.+ +......+.+.++.++.|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999987777654433 3333 233344567788999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
|+.++.++++.+ |...+.... .+.|.++++||.|+.+... +..+.+..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~------~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQ------VATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCc------CCHHHHHHHHHHhCCCcchhh
Confidence 999999988765 666665443 4688999999999854221 111222345678889998874
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-13 Score=107.28 Aligned_cols=116 Identities=22% Similarity=0.206 Sum_probs=77.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCc--cccc---------cc---ceeEEEE----EEEEEecCcEEEEEEEeCCCcc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKY---------EP---TIGVEVH----PLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~---------~~---~~~~~~~----~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
+..+|+++|+.++|||||+++|+...- .... .+ ..|++.. ...+..++..+.+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 446899999999999999999874211 1000 00 0112211 1122224456889999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
.|.......++.+|++++|+|+......+...-| ...... +.|.++++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~--~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE--RVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc--CCCeEEEEECchhh
Confidence 9887788888999999999999876433322222 332232 67889999999975
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=110.93 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=80.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcc--c---------cccc---ceeEEEE--EEEEEe--------------cC
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K---------KYEP---TIGVEVH--PLDFFT--------------NC 59 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--~---------~~~~---~~~~~~~--~~~~~~--------------~~ 59 (173)
+.+-.+|+++|+.++|||||+++|+...-. . .+.+ ..|.+.. ...... +.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345579999999999999999998753210 0 0000 1112222 111211 22
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
..+.+.++||||+..|.......++.+|++++|+|+.++-..+...-| ...... ++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHHC--CCCEEEEEECCccc
Confidence 367889999999999988888888999999999999976544433323 333333 88999999999987
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-13 Score=93.01 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cch---hh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRD---GY 82 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~---~~ 82 (173)
++|+++|.+|+||||++|.+++...........+.+...........+..+.++||||-..... +.. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999887765443322222222222222222457889999999432111 111 12
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcC---CCCEEEEEeCCCCcccccc---------HHHHHHHHHcCCcEE
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQVK---------AKQVTFHRKKNLQYY 150 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~ 150 (173)
..+.|++++|+... +-+..+ ...+..+.+.+. -..++||.|..|....... ....++....+-.|.
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 34689999999998 322111 223333333321 2347888888886543221 123355666777788
Q ss_pred EEccC------CCCChHHHHHHHHHHh
Q 030693 151 EISAK------SNYNFEKPFLYLARKL 171 (173)
Q Consensus 151 ~~S~~------~~~~i~~~~~~i~~~i 171 (173)
.++.+ ....+.++++.+-+.+
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHH
Confidence 87776 3356778777765543
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-13 Score=109.58 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=78.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCc--ccccc------------cceeEEEEE--EEEEec--------CcEEEEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYE------------PTIGVEVHP--LDFFTN--------CGKIRFYCW 67 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~------------~~~~~~~~~--~~~~~~--------~~~~~~~~~ 67 (173)
+..+|+++|..++|||||+++|+...- ..... ...|++... ...... +..+.+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 446999999999999999999875211 00000 011222221 122222 225778999
Q ss_pred eCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 68 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
||||+..+.......++.+|++++|+|+.+.-..+.. ..+..+... ++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc--CCCEEEEEEChhhh
Confidence 9999998887778888999999999999876433332 233344333 78999999999987
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.45 E-value=7e-13 Score=98.12 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=78.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccc-cccc--ceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhh-----
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEP--TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY----- 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~----- 82 (173)
..+++|+|+|.+|+|||||||+|.+-...+ ...+ ...+|.....+.. ...-++.+||+||..........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 456899999999999999999975422221 1122 1222333223322 122369999999976554444444
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc--cc------ccc-----HHHHHHH----HHc
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--NR------QVK-----AKQVTFH----RKK 145 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~------~~~-----~~~~~~~----~~~ 145 (173)
+...|.+|++.+-.-.+. + .++...+.+. ++|+.+|-+|+|.. .. ... ++..+.+ ++.
T Consensus 112 ~~~yD~fiii~s~rf~~n--d-v~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEN--D-VQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GGG-SEEEEEESSS--HH--H-HHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred ccccCEEEEEeCCCCchh--h-HHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 446788888766433221 1 1233445444 88999999999952 11 111 1111111 222
Q ss_pred C---CcEEEEccCCCC--ChHHHHHHHHHHh
Q 030693 146 N---LQYYEISAKSNY--NFEKPFLYLARKL 171 (173)
Q Consensus 146 ~---~~~~~~S~~~~~--~i~~~~~~i~~~i 171 (173)
+ .++|-+|+.+-. ++..+.+.+.+.+
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 2 357888887544 5777888777654
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-12 Score=90.70 Aligned_cols=158 Identities=17% Similarity=0.250 Sum_probs=109.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEe--cCcEEEEEEEeCCCcccccCcchhhccCC---
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCGKIRFYCWDTAGQEKFGGLRDGYYIHG--- 86 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~--- 86 (173)
..-+|+++|..++|||||+.+|.+.. .+.+..|..+....+.- .+....+.+|-.-|.--...+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34689999999999999999955443 33445555655555432 23345778888888765555555554433
Q ss_pred -CEEEEEEECCChh-hhhcHHHHHHHHhh-------------------------hc------------------------
Q 030693 87 -QCAIIMFDVTARL-TYKNVPTWHRDLCR-------------------------VC------------------------ 115 (173)
Q Consensus 87 -~~~i~v~d~~~~~-s~~~~~~~~~~~~~-------------------------~~------------------------ 115 (173)
..+|++.|.+++- -++.+++|..-+.+ ++
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 5788899999983 34445555443211 10
Q ss_pred -------------CCCCEEEEEeCCCCcc-------------ccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 116 -------------ENIPIVLCGNKVDVKN-------------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 116 -------------~~~p~ivv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
-++|++||.+|||... .........||.+++...+.+|++...|++-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 0269999999999732 11233455889999999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 288 r~y 290 (473)
T KOG3905|consen 288 RSY 290 (473)
T ss_pred Hhc
Confidence 764
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=95.00 Aligned_cols=101 Identities=10% Similarity=-0.019 Sum_probs=66.0
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---- 136 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---- 136 (173)
++.+.++||+|..+.... ....+|.++++.+...+..++..+. .+.+. .-++|+||+|+.......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~----aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL----ADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh----hheEEeehhcccchhHHHHHHH
Confidence 578899999997733222 4667999999977555554444332 12222 127889999987643211
Q ss_pred HHHHHHHH-------cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 137 KQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 137 ~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+....... +..+++.+||+++.|++++++.+.+..
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 12222221 235789999999999999999988753
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-12 Score=88.34 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=82.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+...|+++|.+|+|||||++.++............|. ..+. ......+.++|+||.- .. .....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~-~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVV-TGKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEE-ecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 44578999999999999999997754222211112221 1111 1245678899999854 11 223457899999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCE-EEEEeCCCCccccc-cHH----HHH-HHH--HcCCcEEEEccCCCCCh
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQV-KAK----QVT-FHR--KKNLQYYEISAKSNYNF 160 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~~~----~~~-~~~--~~~~~~~~~S~~~~~~i 160 (173)
+++|++....... ...+..+... +.|. ++|+||+|+.+... ..+ ... +.. ..+.+++.+||++.-.+
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 9999986433222 2233333333 6774 55999999864221 111 111 221 12468999999877543
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=95.83 Aligned_cols=138 Identities=19% Similarity=0.183 Sum_probs=99.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh-CCccc------------c-------cccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT-GEFEK------------K-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~-~~~~~------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
++-..+|+-.|.+|||||.+.|+. +.... . ...-.|+......+.++.....+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 356789999999999999999763 21100 0 011225566666667777889999999999
Q ss_pred cccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEE
Q 030693 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (173)
|+.|..-+-..+..+|.+++|+|+...-.-+. .++++-.+- .++|++=++||.|...+.+.+-..+.....++...+
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl--R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~P 167 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL--RDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAP 167 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh--cCCceEEEeeccccccCChHHHHHHHHHHhCcceec
Confidence 99999999999999999999999986532222 233333333 499999999999998887766666666666655444
Q ss_pred E
Q 030693 152 I 152 (173)
Q Consensus 152 ~ 152 (173)
+
T Consensus 168 i 168 (528)
T COG4108 168 I 168 (528)
T ss_pred c
Confidence 3
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-13 Score=97.06 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=54.9
Q ss_pred EEEEEeCCCcccccCcchhhc--------cCCCEEEEEEECCChhhh-hcHHHHHHHHhhh-cCCCCEEEEEeCCCCccc
Q 030693 63 RFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARLTY-KNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~ 132 (173)
.+.++|||||.+.-..+...- ...-++++++|.....+- ..+..++..+.-. .-+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 789999999876544433332 345678888887743221 1122222222111 128999999999999762
Q ss_pred cccH------------------------HHHHHHHHcC-C-cEEEEccCCCCChHHHHHHHHHH
Q 030693 133 QVKA------------------------KQVTFHRKKN-L-QYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 133 ~~~~------------------------~~~~~~~~~~-~-~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
.... +..+.....+ . .++++|+.+++|+.+++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 2000 0001111122 3 69999999999999999887654
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.3e-12 Score=90.13 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=74.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccccc----------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc----
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL---- 78 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---- 78 (173)
.++|+|+|.+|+|||||+|.|+........ ..+............++..+.+.++||||.......
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999998765432221 123333444444555667789999999993221111
Q ss_pred ----------------------c-hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-
Q 030693 79 ----------------------R-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV- 134 (173)
Q Consensus 79 ----------------------~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 134 (173)
. ...=...|+++|.++.+.. .+..+. +..+++....+++|.|+.|+|......
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D--i~~mk~Ls~~vNvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD--IEFMKRLSKRVNVIPVIAKADTLTPEEL 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH--HHHHHHHTTTSEEEEEESTGGGS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH--HHHHHHhcccccEEeEEecccccCHHHH
Confidence 0 0111246899999987643 222222 234444445788999999999754222
Q ss_pred ---cHHHHHHHHHcCCcEEEE
Q 030693 135 ---KAKQVTFHRKKNLQYYEI 152 (173)
Q Consensus 135 ---~~~~~~~~~~~~~~~~~~ 152 (173)
.....+....+++.++..
T Consensus 161 ~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 161 QAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHHHHHHHHHHHTT--S---
T ss_pred HHHHHHHHHHHHHcCceeecc
Confidence 222234445566665543
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-13 Score=92.05 Aligned_cols=143 Identities=19% Similarity=0.271 Sum_probs=92.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCccccc-----CcchhhccCC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFG-----GLRDGYYIHG 86 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~-----~~~~~~~~~~ 86 (173)
.-||+++|.+|+|||++-..+..+.. .......|.+.+....... ..+..+.+||++|++.+- ......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~-a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYI-ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhh-hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 46899999999999998876554432 1112222332222111111 234788999999988432 3556678899
Q ss_pred CEEEEEEECCChhhhh---cHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH----H----HHHHHcCCcEEEEccC
Q 030693 87 QCAIIMFDVTARLTYK---NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----V----TFHRKKNLQYYEISAK 155 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~----~~~~~~~~~~~~~S~~ 155 (173)
+++++|+|+...+-.. ..++.++.+.++.|...+.+..+|.|+......... . ...+..++.++++|..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 9999999999876444 444566777787788889999999999763322211 1 2222345667777766
Q ss_pred C
Q 030693 156 S 156 (173)
Q Consensus 156 ~ 156 (173)
+
T Consensus 163 D 163 (295)
T KOG3886|consen 163 D 163 (295)
T ss_pred h
Confidence 4
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=91.62 Aligned_cols=84 Identities=17% Similarity=0.005 Sum_probs=52.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEE--EecCc---------------EEEEEEEeCCCcc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--FTNCG---------------KIRFYCWDTAGQE 73 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------------~~~~~~~D~~G~~ 73 (173)
...++|+++|.||+|||||+|+|...... .....++|...... .+.+. ...+.++|+||..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVP--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCccc--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 44589999999999999999997544332 12223333332222 22211 2358999999954
Q ss_pred cccC----cchh---hccCCCEEEEEEECC
Q 030693 74 KFGG----LRDG---YYIHGQCAIIMFDVT 96 (173)
Q Consensus 74 ~~~~----~~~~---~~~~~~~~i~v~d~~ 96 (173)
.... +... .++++|++++|+|..
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3221 2222 356899999999974
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=89.66 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=94.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC----Cccccccc-ceeEEE----EEEEEE----e-cCcEEEEEEEeCCCcccccC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG----EFEKKYEP-TIGVEV----HPLDFF----T-NCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~----~~~~~~~~-~~~~~~----~~~~~~----~-~~~~~~~~~~D~~G~~~~~~ 77 (173)
..+++.++|...||||||.+++..- .+.....+ +.|.+. ...... . .++...|.++|+||+..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas--- 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS--- 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence 3499999999999999999996531 11111111 112221 111111 1 34568899999999974
Q ss_pred cchhhccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-cHHHHHHH----HH-----
Q 030693 78 LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFH----RK----- 144 (173)
Q Consensus 78 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~----~~----- 144 (173)
+.+..+.. .|..++|+|+.....-+.+.-+ .+.+.. -...++|+||+|...+.. .....+.+ +.
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~-c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL-CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh-ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 34444433 5899999999977544444321 121211 234577889888654322 11111111 11
Q ss_pred --cCCcEEEEccCCC----CChHHHHHHHHHHhh
Q 030693 145 --KNLQYYEISAKSN----YNFEKPFLYLARKLA 172 (173)
Q Consensus 145 --~~~~~~~~S~~~~----~~i~~~~~~i~~~i~ 172 (173)
.+.+++++|++.| +++.++.+.+.+++.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 2478999999999 899999999888765
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=92.80 Aligned_cols=159 Identities=21% Similarity=0.290 Sum_probs=109.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec--CcEEEEEEEeCCCcccccCcchhhccC---
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIH--- 85 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~--- 85 (173)
...-.|+|+|..++|||||+.+|.+.. ...++.+.++....+.-+ +....+.+|-+.|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 455789999999999999999965433 234566666655554322 233578999998877676666655553
Q ss_pred -CCEEEEEEECCChhhh-hcHHHHHHHH-------------------------hhhc-----------------------
Q 030693 86 -GQCAIIMFDVTARLTY-KNVPTWHRDL-------------------------CRVC----------------------- 115 (173)
Q Consensus 86 -~~~~i~v~d~~~~~s~-~~~~~~~~~~-------------------------~~~~----------------------- 115 (173)
--.+++|.|.+.|..+ +.+.+|+..+ ..+.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 3578889999987433 2333332221 1000
Q ss_pred ---------------CCCCEEEEEeCCCCcc----c---------cccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 116 ---------------ENIPIVLCGNKVDVKN----R---------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 116 ---------------~~~p~ivv~nK~Dl~~----~---------~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
-.+|++||.+|+|... + .+....+.+|..+|+.++.+|++...+++.+..+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 0269999999999632 1 11223457888999999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 260 ~h~l~ 264 (472)
T PF05783_consen 260 LHRLY 264 (472)
T ss_pred HHHhc
Confidence 88764
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-12 Score=91.29 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=99.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccce--eEE--------------------EEEEEEEec------CcEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI--GVE--------------------VHPLDFFTN------CGKI 62 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~--~~~--------------------~~~~~~~~~------~~~~ 62 (173)
.++++|..+|....|||||..++.+ .....+.... |++ .+...-.+. .--.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG-vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG-VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc-eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 4689999999999999999999543 2221111100 000 000000111 1125
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH---
Q 030693 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--- 139 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--- 139 (173)
.+.|.|.||++-.......-..=.|++++|+.++.+.--...+.-+-.+ +...-..++++-||+|+..++...+..
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhccceEEEEecccceecHHHHHHHHHHH
Confidence 7889999999955443333333359999999998754322223323333 222344589999999998865443332
Q ss_pred -HHHHH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 140 -TFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 140 -~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+|.+- .+.+++++||..+.|++-++++|.+.+
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 23322 367899999999999999999998875
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-11 Score=91.85 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=112.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+-+++.++|+.++|||.+++.++++.+...+..+.........+...+....+.+-|.+-. ....+...- ..+|++.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 34589999999999999999999998776655455444444444444566677788887754 222222222 6799999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--ccHHHHHHHHHcCCc-EEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~~~~i 167 (173)
++||.+++.++.......+.-... ...|+++|++|+|+.+.. ......+++++++++ .+.+|.+.... .++|..|
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL 578 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKL 578 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHH
Confidence 999999999988876655444333 689999999999998733 222237888888874 57788885334 8888888
Q ss_pred HHHh
Q 030693 168 ARKL 171 (173)
Q Consensus 168 ~~~i 171 (173)
....
T Consensus 579 ~~~A 582 (625)
T KOG1707|consen 579 ATMA 582 (625)
T ss_pred HHhh
Confidence 7654
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.2e-12 Score=91.17 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=76.9
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh-------hhhcHHHHHHHHhhhc-----CCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRVC-----ENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~ 127 (173)
.+..+.++|.|||..-+.-|.+++.+++++++|+++++-. ..+.+..-+..+...+ .+.++++++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 5688999999999999999999999999999999999632 2233333333333332 589999999999
Q ss_pred CCcccc-----------------ccHHHHH-----HHHHc-----CCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 128 DVKNRQ-----------------VKAKQVT-----FHRKK-----NLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~-----------------~~~~~~~-----~~~~~-----~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+-.+. ..++... +.... .+=...+.|.+-.+|+.+|+++...+.
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii 344 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTII 344 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHH
Confidence 974311 1111111 11111 122345678888899999998877664
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=85.14 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=82.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccc------------cc----cceeEEEEEEEEE----------------ecC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK------------YE----PTIGVEVHPLDFF----------------TNC 59 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~------------~~----~~~~~~~~~~~~~----------------~~~ 59 (173)
....|+++|..|+|||||+++++....... .. ...+.......-. ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 357889999999999999999764311000 00 0001000000000 000
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cHH
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAK 137 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~ 137 (173)
....+.++++.|.-... ..+....+..+.|+|+.+.... ...... . ...|.++++||+|+.+... ..+
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~---~--~~~a~iiv~NK~Dl~~~~~~~~~~ 170 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYPG---M--FKEADLIVINKADLAEAVGFDVEK 170 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhHh---H--HhhCCEEEEEHHHccccchhhHHH
Confidence 13466777777721111 1111234555677887754321 111111 1 1457799999999975322 222
Q ss_pred HHHHHHHc--CCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 138 QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 138 ~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
..+..++. ..+++++||+++.|+.++++++.+..
T Consensus 171 ~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 171 MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 33333333 37899999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=97.38 Aligned_cols=133 Identities=18% Similarity=0.152 Sum_probs=92.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--Cccc---c-----------cccceeEEEEEEEEEecCc-EEEEEEEeCCCcc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK---K-----------YEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE 73 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~---~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~ 73 (173)
....+|.++|+-.+||||+.++++.. .... . .....|+|...-...+... .+.+.++|||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 44578999999999999999998742 1110 0 0112244444444444444 5899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcC
Q 030693 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 146 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (173)
.|..-....++-+|++++|+|+...-..+.-.-|... .++ ++|.++++||+|........-..++....+
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-~~~--~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-DKY--GVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-hhc--CCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 9999999999999999999999987554544444433 343 899999999999876554443344443333
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=95.33 Aligned_cols=157 Identities=22% Similarity=0.207 Sum_probs=98.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc----ceeEEEEEEEE--------Eec-C---cEEEEEEEeCCCccc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----TIGVEVHPLDF--------FTN-C---GKIRFYCWDTAGQEK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~--------~~~-~---~~~~~~~~D~~G~~~ 74 (173)
.+..-++|+|...+|||-|+..+.+.+....-.. -+|.++.+..- .-+ . .---+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 3445689999999999999998655333221111 11222222110 000 0 112367899999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc------cc------------ccH
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN------RQ------------VKA 136 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------~~------------~~~ 136 (173)
|..+......-||.+|+|+|+...-.-+. ..-++.++.. +.|+||++||+|..- .. ...
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqt-iESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQT-IESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcch-hHHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 99999999999999999999985421111 1223455554 899999999999421 00 000
Q ss_pred H-------H-HHHHHHc-C-------------CcEEEEccCCCCChHHHHHHHHHH
Q 030693 137 K-------Q-VTFHRKK-N-------------LQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 137 ~-------~-~~~~~~~-~-------------~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
+ . .+|+.+. + ++++++||.+|+||.+++-+|++.
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 0 0 0122110 1 346899999999999999988764
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.1e-12 Score=87.30 Aligned_cols=101 Identities=7% Similarity=0.014 Sum_probs=64.9
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ- 138 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~- 138 (173)
.++.+.+++|.|-.+.. -....-+|.+++|.-....+..+.++.=+-++-. ++|+||+|.+........
T Consensus 120 aG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD-------i~vVNKaD~~gA~~~~~~l 189 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD-------IFVVNKADRPGADRTVRDL 189 (266)
T ss_dssp TT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S-------EEEEE--SHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc-------EEEEeCCChHHHHHHHHHH
Confidence 35778889988754322 2245569999999999988887777764445533 788999996653322222
Q ss_pred HHHHHH-------cCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 139 VTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 139 ~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
...... +..+++.+||.++.|++++++.|.+.
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 222211 23578999999999999999998763
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=85.08 Aligned_cols=81 Identities=17% Similarity=0.025 Sum_probs=50.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEE--EEEecCc---------------EEEEEEEeCCCccccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEKFG 76 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~~~D~~G~~~~~ 76 (173)
++|+++|.||+|||||+|++...... .....++|.... .+.+.+. ...+.+.|+||.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~--v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE--AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe--ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 78999999999999999997765521 122222332222 1122211 1358999999954321
Q ss_pred C----cchh---hccCCCEEEEEEECC
Q 030693 77 G----LRDG---YYIHGQCAIIMFDVT 96 (173)
Q Consensus 77 ~----~~~~---~~~~~~~~i~v~d~~ 96 (173)
. +... .++++|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 2222 357899999999984
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-11 Score=78.60 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=52.4
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc--HHHHHHH--HHcCCcEEEEccCCCCCh
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFH--RKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~--~~~~~~~~~~S~~~~~~i 160 (173)
..+.-|+|+|++..+-.. .+-.+.+.+ .=++|+||.|+...... +...+-+ -+.+.+++++|+++|+|+
T Consensus 117 ~d~~~v~VidvteGe~~P--~K~gP~i~~-----aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 117 GDHLRVVVIDVTEGEDIP--RKGGPGIFK-----ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred hhceEEEEEECCCCCCCc--ccCCCceeE-----eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 345889999998764211 010111111 22788999999874332 2222323 345789999999999999
Q ss_pred HHHHHHHHHHhh
Q 030693 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
+++++|+.....
T Consensus 190 ~~~~~~i~~~~~ 201 (202)
T COG0378 190 DEWLRFIEPQAL 201 (202)
T ss_pred HHHHHHHHhhcc
Confidence 999999987653
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-11 Score=87.00 Aligned_cols=100 Identities=10% Similarity=-0.002 Sum_probs=63.2
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH--
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-- 138 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-- 138 (173)
++.+.++||+|..... ......+|.++++-..... +++......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence 5788999999854221 2345667888887544332 3333322222 26678999999999764321110
Q ss_pred ------HHHHH---HcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 139 ------VTFHR---KKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 139 ------~~~~~---~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
..+.. ....+++++||+++.|++++++++.+.
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 01111 122468999999999999999999875
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=81.30 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=43.3
Q ss_pred EEEEEeCCCccc----ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030693 63 RFYCWDTAGQEK----FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 63 ~~~~~D~~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
.+.++|+||... ....+..++..+|++++|.+++...+-.....+....... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 477999999532 3356778889999999999999865544444444444443 33488888984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-11 Score=83.84 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=100.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh---CC-------cc----cccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT---GE-------FE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~---~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
.+.++|..+|....|||||..++.. .. +. .......|+++....+.++.....+-..|+||+..|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 4579999999999999999887542 11 00 1112244667666666666677888999999999887
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc-----cHHHHHHHHHcCCc--
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKNLQ-- 148 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~-- 148 (173)
.+...-..+.|+.|+|+++++..--+.- .-+..-++. .+| +++++||+|+.++.. ..+..++..+++++
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTr-EHiLlarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd 166 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGD 166 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcch-hhhhhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7666666788999999999986532221 111122222 676 667889999987332 33445667777643
Q ss_pred ---EEEEccCC--------CCChHHHHHHHHH
Q 030693 149 ---YYEISAKS--------NYNFEKPFLYLAR 169 (173)
Q Consensus 149 ---~~~~S~~~--------~~~i~~~~~~i~~ 169 (173)
++.-|+.. ...+.++++++-+
T Consensus 167 ~~Pii~gSal~ale~~~~~~~~i~eLm~avd~ 198 (394)
T COG0050 167 DTPIIRGSALKALEGDAKWEAKIEELMDAVDS 198 (394)
T ss_pred CcceeechhhhhhcCCcchHHHHHHHHHHHHh
Confidence 45444431 1134566665544
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-10 Score=77.82 Aligned_cols=87 Identities=9% Similarity=0.039 Sum_probs=59.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-------cchhhcc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYI 84 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~ 84 (173)
-..+++++|.|.+|||||+..+. ....+. .+..-++...+.......+..+++.|.||.-...+ ......+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT-~T~Sea-A~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKIT-STHSEA-ASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhh-cchhhh-hceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 35799999999999999999844 433332 22233455555555555677899999999532221 2233467
Q ss_pred CCCEEEEEEECCChhh
Q 030693 85 HGQCAIIMFDVTARLT 100 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s 100 (173)
.+|++++|.|++..+.
T Consensus 139 taDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 139 TADLILMVLDATKSED 154 (364)
T ss_pred cccEEEEEecCCcchh
Confidence 8999999999997553
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-11 Score=86.92 Aligned_cols=101 Identities=10% Similarity=0.020 Sum_probs=69.1
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 139 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 139 (173)
.++.+.+++|.|-.+.. ......+|.+++|.=..-....+.++.=+-++-. ++|+||.|....+......
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD-------i~vINKaD~~~A~~a~r~l 211 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD-------IIVINKADRKGAEKAAREL 211 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh-------eeeEeccChhhHHHHHHHH
Confidence 46788899998865433 2244568999998887777777777664444444 7889999976643322222
Q ss_pred HHHHH----------cCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 140 TFHRK----------KNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 140 ~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
.++.. +.-+.+.+||..|+|++++++.+.+.
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence 22211 23568999999999999999998764
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-10 Score=80.46 Aligned_cols=91 Identities=9% Similarity=0.093 Sum_probs=52.9
Q ss_pred EEEEEEeCCCcccc-------------cCcchhhcc-CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030693 62 IRFYCWDTAGQEKF-------------GGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 62 ~~~~~~D~~G~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
..++++|+||.... ..+...|+. ..+.+++|+|+...-.-.........+.. .+.|+++|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence 57889999996421 123455666 45689999988743221222233333333 378999999999
Q ss_pred CCccccccHHHHHHHHH----cCCcEEEEccCC
Q 030693 128 DVKNRQVKAKQVTFHRK----KNLQYYEISAKS 156 (173)
Q Consensus 128 Dl~~~~~~~~~~~~~~~----~~~~~~~~S~~~ 156 (173)
|..++... ....... ....|+-+-...
T Consensus 203 D~~~~~~~--~~~~~~~~~~~l~~g~~~v~nr~ 233 (240)
T smart00053 203 DLMDEGTD--ARDILENKLLPLRRGYIGVVNRS 233 (240)
T ss_pred CCCCccHH--HHHHHhCCccccCCCEEEEECCC
Confidence 98764322 3333332 234566554443
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=85.74 Aligned_cols=155 Identities=15% Similarity=0.060 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
.|+..|.-..|||||+..+.+..... .-....|++.+.--...+.....+.|+|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 46778999999999999965443211 11223455555444444445568999999999988877777778899999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-HHHH---HHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFH---RKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~---~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+.++.-..+.. ..-.+.+.......++|+||+|..+....+.. .+.. ...+.+++.+|+.+|+|+.++.++|.+
T Consensus 82 ~~deGl~~qtg--EhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~ 159 (447)
T COG3276 82 AADEGLMAQTG--EHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELID 159 (447)
T ss_pred eCccCcchhhH--HHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence 99754322221 22233333334446999999999874322221 1222 233567899999999999999999876
Q ss_pred Hh
Q 030693 170 KL 171 (173)
Q Consensus 170 ~i 171 (173)
..
T Consensus 160 L~ 161 (447)
T COG3276 160 LL 161 (447)
T ss_pred hh
Confidence 53
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.9e-11 Score=78.50 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=63.3
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCC
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (173)
.+.++..+++|++++|+|++++...... .+...+.. .+.|+++|+||+|+.+.........+....+.+++++||++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 4566778889999999999876533331 22222222 37899999999998643222221123334567899999999
Q ss_pred CCChHHHHHHHHHHh
Q 030693 157 NYNFEKPFLYLARKL 171 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i 171 (173)
+.|++++++.+.+.+
T Consensus 81 ~~gi~~L~~~l~~~~ 95 (156)
T cd01859 81 RLGTKILRRTIKELA 95 (156)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999987653
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-11 Score=85.57 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=90.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccccc--ccceeEEEEEEEEEecCcEEEEEEEeCCCccccc--Ccchh------h
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG--GLRDG------Y 82 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~~~~~------~ 82 (173)
.--|+++|..|+|||||+++|..-...+.. -.|...|...... . .+-.+-+.||.|.-+-- .+... -
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~L--p-sg~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHL--P-SGNFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccC--C-CCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 456899999999999999997743333221 2233333322222 2 34567788999842211 12222 2
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CC----CCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCC
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN----IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~----~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
...+|+++.|.|++.|..-......+.-+.+.- +. ..++=|-||+|........+. ++ -+.+||++|
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~------n~--~v~isaltg 326 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK------NL--DVGISALTG 326 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcccc------CC--ccccccccC
Confidence 457999999999999865444444444444431 11 124556688887665443321 11 477999999
Q ss_pred CChHHHHHHHHHHh
Q 030693 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
+|+.++.+.+-.++
T Consensus 327 dgl~el~~a~~~kv 340 (410)
T KOG0410|consen 327 DGLEELLKAEETKV 340 (410)
T ss_pred ccHHHHHHHHHHHh
Confidence 99999998876554
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=90.08 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=82.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc-----------------ceeEEEEEEEEE---ecCcEEEEEEEeC
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----------------TIGVEVHPLDFF---TNCGKIRFYCWDT 69 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~~~D~ 69 (173)
+....+++++|+-++|||+|+..|.....+..... ..++.....+.. ..++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34457899999999999999998765443322111 111222222322 2467789999999
Q ss_pred CCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030693 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (173)
Q Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (173)
||+-.|..-....++.+|++++++|+.+.-.++.-+ .+....+ .+.|+++|+||+|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHh--ccCcEEEEEehhHH
Confidence 999999998889999999999999999876554422 2222222 38999999999995
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.5e-11 Score=87.02 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=69.3
Q ss_pred ccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEc
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S 153 (173)
-..+.+..+.++|.+++|+|+.++. ....+..|+..... .++|+++|+||+||.+..............++.++.+|
T Consensus 79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEE
Confidence 3455666789999999999998765 33345666665533 48999999999999754322222334456788999999
Q ss_pred cCCCCChHHHHHHHHHH
Q 030693 154 AKSNYNFEKPFLYLARK 170 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~ 170 (173)
|+++.|++++++.+...
T Consensus 157 A~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 157 VETGIGLEALLEQLRNK 173 (352)
T ss_pred cCCCCCHHHHhhhhccc
Confidence 99999999999987653
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=78.86 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---cchhhccCCCEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQCAI 90 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~~~~i 90 (173)
.+|+++|...+|||++.+....+..+.. .-....+.....-.+...-+.|.+||.||+-.+-. -....++++-+++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 4599999999999999987444443322 11111111111112223557899999999865432 3455688999999
Q ss_pred EEEECCChh--hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH--------H-HHHH--Hc--CCcEEEEccC
Q 030693 91 IMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--------V-TFHR--KK--NLQYYEISAK 155 (173)
Q Consensus 91 ~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--------~-~~~~--~~--~~~~~~~S~~ 155 (173)
+|+|+.+.- .+..+...+....+.++++.+=+++.|.|-..+....+. . +++. .. .++|+-+| .
T Consensus 107 fvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS-I 185 (347)
T KOG3887|consen 107 FVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS-I 185 (347)
T ss_pred EEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee-e
Confidence 999987542 222222233333344588999999999995432211111 1 1111 11 23344444 4
Q ss_pred CCCChHHHHHHHHHHhh
Q 030693 156 SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i~ 172 (173)
...++-|.|..+.++++
T Consensus 186 yDHSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 186 YDHSIFEAFSKVVQKLI 202 (347)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 56789999998888764
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=79.42 Aligned_cols=137 Identities=16% Similarity=0.267 Sum_probs=83.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccc----------cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc---
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--- 78 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--- 78 (173)
-.++|+++|+.|+|||||+|.|++...... ..++.........+..++..+.+.++||||...+-..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 358999999999999999999876522111 2244444455555555677789999999994332211
Q ss_pred chh-----------------------hcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc
Q 030693 79 RDG-----------------------YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (173)
Q Consensus 79 ~~~-----------------------~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (173)
|.. -+. ..|+++|.+..+. .++..+. +..+++....+-+|.|+.|+|.--..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLD--IEAMKRLSKRVNLIPVIAKADTLTDD 178 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHH--HHHHHHHhcccCeeeeeeccccCCHH
Confidence 111 111 3577777776553 3333333 23334444467789999999975422
Q ss_pred ----ccHHHHHHHHHcCCcEEE
Q 030693 134 ----VKAKQVTFHRKKNLQYYE 151 (173)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~ 151 (173)
......+....+++++|.
T Consensus 179 El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 179 ELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHhCCceeC
Confidence 222334556667777764
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=83.63 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=68.7
Q ss_pred hhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCC
Q 030693 80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (173)
+..+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+.+..............+.+++++|++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 44588999999999999887 777777887776654 899999999999976422122233445568899999999999
Q ss_pred ChHHHHHHHHH
Q 030693 159 NFEKPFLYLAR 169 (173)
Q Consensus 159 ~i~~~~~~i~~ 169 (173)
|++++++.+..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999988754
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.2e-10 Score=87.81 Aligned_cols=118 Identities=10% Similarity=0.092 Sum_probs=69.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-------c---chhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------L---RDGY 82 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~---~~~~ 82 (173)
.++|+++|.+|+||||++|.+++...........+++.. ........+..+.++||||...... . ...+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 479999999999999999998876533222211222222 2221112346799999999654321 0 1113
Q ss_pred cc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcC---CCCEEEEEeCCCCcc
Q 030693 83 YI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (173)
Q Consensus 83 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 131 (173)
+. ..|++++|..++.......-..+++.+.+.+. -.-+|||+|+.|...
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 33 47999999987643222122244555544432 234788899999764
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=78.89 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=64.3
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH-HHHHH-----HHcCC-
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL- 147 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~-----~~~~~- 147 (173)
++.++..+++++|++++|+|++++.. .|...+.....+.|+++|+||+|+.......+ ...+. ...+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 46677888999999999999987642 12222222234789999999999875433222 22332 22332
Q ss_pred --cEEEEccCCCCChHHHHHHHHHHh
Q 030693 148 --QYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 148 --~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.++++||+++.|++++++++.+.+
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998753
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=82.63 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=64.6
Q ss_pred hccCCCEEEEEEECCChhhhhc-HHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHHHHHHHHHcCCcEEEEccCCCCC
Q 030693 82 YYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (173)
...++|.+++|+|+.++..... +..|+..+.. .++|+++|+||+|+.+ .....+........+.+++++|++++.|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 3589999999999988765444 4567666554 3899999999999963 2222223345556688999999999999
Q ss_pred hHHHHHHHHH
Q 030693 160 FEKPFLYLAR 169 (173)
Q Consensus 160 i~~~~~~i~~ 169 (173)
++++++.+..
T Consensus 155 i~~L~~~l~g 164 (298)
T PRK00098 155 LDELKPLLAG 164 (298)
T ss_pred HHHHHhhccC
Confidence 9999988753
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-10 Score=86.28 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=76.0
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh-------hhhcHHHHHHHHhhh-----cCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRV-----CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~ 127 (173)
....+.++|++|+...+.-|.+++.++++++||+++++-. ....+..-+..+... ..+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 5568899999999999999999999999999999998532 223343333333332 2589999999999
Q ss_pred CCcc------c--------------cccHHHHHHHHH------------cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 128 DVKN------R--------------QVKAKQVTFHRK------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 128 Dl~~------~--------------~~~~~~~~~~~~------------~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
|+-. . ........+... ..+-+..++|.+..++..+|+.+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9632 1 011122222211 112356899999999999999887653
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-09 Score=73.87 Aligned_cols=140 Identities=15% Similarity=0.200 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccc---------ccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc---Ccc-
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---GLR- 79 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~~- 79 (173)
.++|+|+|.+|.||||++|.+....... ....|.........+..++...+++++||||...+- ..|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 4899999999999999999976543221 112222222222333445667789999999943221 111
Q ss_pred ----------------------hhhccC--CCEEEEEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCcc---
Q 030693 80 ----------------------DGYYIH--GQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--- 131 (173)
Q Consensus 80 ----------------------~~~~~~--~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~--- 131 (173)
...+.. .+.++|.+..+ ..++..+.- ++..+.+ -+-++-|+-|.|..-
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDtlTleE 201 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLEE 201 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeecccccHHH
Confidence 112333 45555555544 445555442 3333333 455788889999532
Q ss_pred -ccccHHHHHHHHHcCCcEEEEccCC
Q 030693 132 -RQVKAKQVTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (173)
....+...+-...+++.+++-.+-+
T Consensus 202 r~~FkqrI~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 202 RSAFKQRIRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred HHHHHHHHHHHHHhcCcccccccccc
Confidence 2222333455556777766654433
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-10 Score=79.70 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=38.7
Q ss_pred CCEEEEEeCCCCcccc--ccHHHHHHHHH--cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 118 IPIVLCGNKVDVKNRQ--VKAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 118 ~p~ivv~nK~Dl~~~~--~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+-++|+||+|+.... ..+...+..+. ...+++++|+++|+|++++.+||.++.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4558899999997521 12222232322 357899999999999999999998753
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-09 Score=76.20 Aligned_cols=140 Identities=17% Similarity=0.297 Sum_probs=83.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccc---------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------ 77 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------ 77 (173)
.++++++|++|.|||||+|.|+...... ....+..+.........++..+.+++.||||....-.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 4899999999999999999977553221 2222444445545555567778999999999322111
Q ss_pred -------------------cchhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--
Q 030693 78 -------------------LRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (173)
Q Consensus 78 -------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-- 134 (173)
+.+.-+. ..|+++|.+..+. ..+..+. +..+++....+.+|.|+-|+|......
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~D--i~~Mk~l~~~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLD--IEFMKKLSKKVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhh--HHHHHHHhccccccceeeccccCCHHHHH
Confidence 1112223 4677777777653 2333333 223333344778899999999754332
Q ss_pred --cHHHHHHHHHcCCcEEEEccC
Q 030693 135 --KAKQVTFHRKKNLQYYEISAK 155 (173)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~S~~ 155 (173)
.....+....+++.++....-
T Consensus 178 ~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 178 QFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHHHHHcCcceecCCCC
Confidence 222334555666666554433
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-09 Score=76.32 Aligned_cols=85 Identities=22% Similarity=0.141 Sum_probs=53.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccc--eeEEEEEEEEE----------ec-C---cEEEEEEEeCCCc----
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--IGVEVHPLDFF----------TN-C---GKIRFYCWDTAGQ---- 72 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~----------~~-~---~~~~~~~~D~~G~---- 72 (173)
.+++.++|.||+|||||.|++..........|. +..+.....+. .. . ...++.++|++|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 378999999999999999997765533222221 11111111111 01 1 2357899999873
Q ss_pred ccccCcchhh---ccCCCEEEEEEECCC
Q 030693 73 EKFGGLRDGY---YIHGQCAIIMFDVTA 97 (173)
Q Consensus 73 ~~~~~~~~~~---~~~~~~~i~v~d~~~ 97 (173)
.+.+.+-..| ++++|+++.|++...
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3344455555 678999999999883
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-10 Score=85.36 Aligned_cols=156 Identities=21% Similarity=0.364 Sum_probs=116.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+++|+.|+|..++|||+|+.+++.+.+.....+.- .....++..++....+.+.|.+|.. ...|...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 3568999999999999999999999999876533332 3445666677778888888888733 34577789999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCc----cccccHHHH-HHHHHcCCcEEEEccCCCCChHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~----~~~~~~~~~-~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
|+|+.+.+..+++.+..+...+..+. ..+|+++++++--.. +.....+.. ..+....+.+|+.++.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 99999999999988877666665432 467788877764432 222222333 34455678999999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|..++.+++
T Consensus 180 vf~~~~~k~i 189 (749)
T KOG0705|consen 180 VFQEVAQKIV 189 (749)
T ss_pred HHHHHHHHHH
Confidence 9999887654
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-09 Score=79.78 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=67.0
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc---HHHHHHHHHcCCcEEEEccCCCCC
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHRKKNLQYYEISAKSNYN 159 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~S~~~~~~ 159 (173)
..++|.+++|++.....++..+..|+..... .++|.++|+||+|+.+.... .+........+++++++||+++.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 4568999999999877788888888776544 37899999999999754321 222234456678999999999999
Q ss_pred hHHHHHHHHHH
Q 030693 160 FEKPFLYLARK 170 (173)
Q Consensus 160 i~~~~~~i~~~ 170 (173)
++++++++...
T Consensus 196 ideL~~~L~~k 206 (347)
T PRK12288 196 LEELEAALTGR 206 (347)
T ss_pred HHHHHHHHhhC
Confidence 99999998754
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=78.51 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=92.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCccc-----------------------ccccceeEEEEEEEEEe----------c
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-----------------------KYEPTIGVEVHPLDFFT----------N 58 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~----------~ 58 (173)
-+++++++|...+|||||+..|..+.... ......|.+.....+.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 36899999999999999998766543211 11112222222111111 2
Q ss_pred CcEEEEEEEeCCCcccccCcchhhccC--CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH
Q 030693 59 CGKIRFYCWDTAGQEKFGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (173)
Q Consensus 59 ~~~~~~~~~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (173)
...--++++|.+|+.+|...+.+.+.. .|.+.+|++++..-.... +.-+-.+... ++|+.++++|+|+.++....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence 223457899999999998877776664 478888888876532211 1222222222 99999999999997653211
Q ss_pred --------------------------HHHHHHH----HcCCcEEEEccCCCCChHHHHH
Q 030693 137 --------------------------KQVTFHR----KKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 137 --------------------------~~~~~~~----~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+....+. ..-.++|.+|+.+|+|++-+..
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 1111111 1224678999999999886543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=71.38 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
+++++|.+|+|||||+|+++..... ......|.+.....+..+. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999998876654 3344556666555555543 5799999995
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-08 Score=74.34 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=93.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCc--------------ccccccceeEEEE----------EEEEEe-cCcEEEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVH----------PLDFFT-NCGKIRFYCW 67 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~ 67 (173)
.+=|.|+||..+|||||++||..-.. .+-.++..|.+.. ..++.+ ++-.++++++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 36689999999999999999764100 0111122222211 122233 4567899999
Q ss_pred eCCCc-------------cccc-Cc---------------chhhcc--CCCEEEEEEECC----ChhhhhcHH-HHHHHH
Q 030693 68 DTAGQ-------------EKFG-GL---------------RDGYYI--HGQCAIIMFDVT----ARLTYKNVP-TWHRDL 111 (173)
Q Consensus 68 D~~G~-------------~~~~-~~---------------~~~~~~--~~~~~i~v~d~~----~~~s~~~~~-~~~~~~ 111 (173)
|+.|. +++. .- ++..++ ..=++++.-|-+ .++.+..+. ..+.++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99871 1110 01 111122 223566655555 345555544 366677
Q ss_pred hhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCC--CCChHHHHHHHH
Q 030693 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLA 168 (173)
Q Consensus 112 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~i~ 168 (173)
+.. ++|+++++|-.+.....-..-..++..+++++++++++.. .+.+..+++.++
T Consensus 177 k~i--gKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHh--CCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 666 9999999998887766555556678889999999988863 345555555543
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=81.05 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=69.1
Q ss_pred cccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc-HHHH----HHHHHcC
Q 030693 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQV----TFHRKKN 146 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~----~~~~~~~ 146 (173)
.+.|..+...+.+.++++++|+|+.+.. ..|...+.+...+.|+++|+||+|+..+... .+.. +.+...+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 4567777888888999999999997654 2345555555557899999999998654332 2222 3355566
Q ss_pred C---cEEEEccCCCCChHHHHHHHHH
Q 030693 147 L---QYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 147 ~---~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+ .++.+||+++.|++++++.+.+
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 5 4899999999999999999865
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-09 Score=77.64 Aligned_cols=155 Identities=16% Similarity=0.234 Sum_probs=94.0
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCc------------------ccccccceeEEEEEEEE--------------
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF------------------EKKYEPTIGVEVHPLDF-------------- 55 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~-------------- 55 (173)
..+.-+++++++|...+|||||+..|..+.. .....++.|.++-....
T Consensus 128 ~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 128 EKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred CccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 4456679999999999999999876544311 12222333333221111
Q ss_pred -----EecCcEEEEEEEeCCCcccccCcchhhccC--CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 56 -----FTNCGKIRFYCWDTAGQEKFGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 56 -----~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.+++..--++|+|..|+++|-..+..-..+ .|...+++-++.. .-.+.+....+.- .-++|+.+|.+|+|
T Consensus 208 LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLAL-aL~VPVfvVVTKID 284 (641)
T KOG0463|consen 208 LDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLAL-ALHVPVFVVVTKID 284 (641)
T ss_pred ccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhh-hhcCcEEEEEEeec
Confidence 112223357899999999987665544332 5777777766543 1222222222211 12899999999999
Q ss_pred CccccccHHHHHHH----H--------------------------HcCCcEEEEccCCCCChHHHHH
Q 030693 129 VKNRQVKAKQVTFH----R--------------------------KKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 129 l~~~~~~~~~~~~~----~--------------------------~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+...+..++...+. + +.-|++|++|..+|+|+.-+.-
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 98766555443222 1 1226789999999999886543
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-09 Score=70.34 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=40.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
..++|+++|.+|+|||||+|++..... ....+..|++.....+..+ -.+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKV-CKVAPIPGETKVWQYITLM---KRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCc-eeeCCCCCeeEeEEEEEcC---CCEEEEECcCC
Confidence 457899999999999999999776543 3335566666654444332 23789999993
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=71.51 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=42.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
.++++++|.||+|||||+|++.+... ....+..|+|.....+..+ ..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 48999999999999999999775543 3345667777765555443 25789999993
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.5e-09 Score=76.12 Aligned_cols=79 Identities=16% Similarity=0.043 Sum_probs=48.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEE--EEecCc---------------EEEEEEEeCCCcccccC-
Q 030693 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCG---------------KIRFYCWDTAGQEKFGG- 77 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~~~~~D~~G~~~~~~- 77 (173)
|+++|.||+|||||+|++....... ....++|..... +.+.+. ...++++|+||.....+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~--~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA--ANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc--ccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 5789999999999999977655422 112222322221 222221 13589999999543221
Q ss_pred ---cchhh---ccCCCEEEEEEECC
Q 030693 78 ---LRDGY---YIHGQCAIIMFDVT 96 (173)
Q Consensus 78 ---~~~~~---~~~~~~~i~v~d~~ 96 (173)
+...+ ++++|++++|+|..
T Consensus 79 ~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 22223 56799999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8e-09 Score=75.76 Aligned_cols=121 Identities=20% Similarity=0.139 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccc-cceeEEEEEEEEEe------cCc--------------------------
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFT------NCG-------------------------- 60 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~-------------------------- 60 (173)
-=|+++|.-..|||||++.|+.+.++.... +...+++....+.. ++.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 458999999999999999988877764322 12222222222211 110
Q ss_pred -------EEEEEEEeCCCccc-----------ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEE
Q 030693 61 -------KIRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 122 (173)
Q Consensus 61 -------~~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~iv 122 (173)
--.+.++||||.-+ |......|...+|.++++||+...+--++....+..++.+ .-.+-|
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiRV 216 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIRV 216 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeEE
Confidence 01367999999422 2223455678899999999998765545556666666655 445788
Q ss_pred EEeCCCCccccccH
Q 030693 123 CGNKVDVKNRQVKA 136 (173)
Q Consensus 123 v~nK~Dl~~~~~~~ 136 (173)
|+||.|..+.+.-.
T Consensus 217 VLNKADqVdtqqLm 230 (532)
T KOG1954|consen 217 VLNKADQVDTQQLM 230 (532)
T ss_pred EeccccccCHHHHH
Confidence 89999998865433
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-09 Score=75.71 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=89.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc-ceeEEEEEEEEEecCcEEEEEEEeCCCc----------ccccCcc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~ 79 (173)
....+++++|.+|+|||+|++.++.......... +.|.+...--+. ..-.+.+.|.||. ..+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcchHhHhH
Confidence 3458999999999999999999876654433232 444443332232 3347888999992 1223344
Q ss_pred hhhccCCC---EEEEEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCccccc------cHHHH-------HHH
Q 030693 80 DGYYIHGQ---CAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV-------TFH 142 (173)
Q Consensus 80 ~~~~~~~~---~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~-------~~~ 142 (173)
..|+.+-+ -+++.+|++.+- +.... .+..+.+. ++|+.+|+||||-..... ..... +..
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 45544322 344455655432 22222 22333333 999999999999643111 11111 112
Q ss_pred HHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 143 RKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 143 ~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.....+|+.+|+.++.|+++++-.+.+
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhh
Confidence 223456788999999999998766654
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-08 Score=70.53 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-------CcchhhccCC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLRDGYYIHG 86 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 86 (173)
.++.++|.|.+||||++.. +.+.+.+. .+..+++...+.........++++.|.||.-+.. .......+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~-l~g~~s~v-asyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSK-LTGTFSEV-AAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhh-hcCCCCcc-ccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999998 44555543 4455556655555555577789999999943211 1223346789
Q ss_pred CEEEEEEECCChhhh
Q 030693 87 QCAIIMFDVTARLTY 101 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~ 101 (173)
+.+++|.|+..|-+.
T Consensus 138 nli~~vld~~kp~~h 152 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSH 152 (358)
T ss_pred cEEEEEeeccCcccH
Confidence 999999999876443
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.1e-09 Score=76.69 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=95.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc----------------ceeEEEEEEEEE------e----------
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----------------TIGVEVHPLDFF------T---------- 57 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~------~---------- 57 (173)
.+.++.+.+.|..+.|||||+..|..+......-. +...+...+-+. .
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 45679999999999999999988776644221110 111222222111 0
Q ss_pred ---cCcEEEEEEEeCCCcccccCcch--hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030693 58 ---NCGKIRFYCWDTAGQEKFGGLRD--GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 58 ---~~~~~~~~~~D~~G~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
+...--+.|.|+.|++.+-..+. .+-.+.|..++++-+++..+ .+.+..--+.-. -..|++++++|+|+.++
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a-~~lPviVvvTK~D~~~d 270 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA-MELPVIVVVTKIDMVPD 270 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh-hcCCEEEEEEecccCcH
Confidence 11123477999999998764332 23446899999999988753 233322222221 28999999999999763
Q ss_pred cccH----HHHHHHH-------------------------HcCCcEEEEccCCCCChHHHHHHHH
Q 030693 133 QVKA----KQVTFHR-------------------------KKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 133 ~~~~----~~~~~~~-------------------------~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
.... +.....+ +.-.++|.+|+.+|+|++-+.+.+.
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 2211 1111111 1125789999999999987665543
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.1e-09 Score=71.79 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=41.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcc-------cccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
..+++++|.+|+|||||+|+|...... .......|+|.....+..+. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 368999999999999999998764321 12344557777777666543 4799999993
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=67.65 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=56.9
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHHHcCCcEEEEccCCCCCh
Q 030693 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~S~~~~~~i 160 (173)
.+.++|++++|+|+.++..-.. ......+.....++|+++|+||+|+.++....... .+...+....+++|++.+.|+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~ 83 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGK 83 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC-HHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccH
Confidence 4578999999999998642211 12222332223368999999999996543221112 222222233578999999999
Q ss_pred HHHHHHHHHH
Q 030693 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
+++++.+.+.
T Consensus 84 ~~L~~~l~~~ 93 (157)
T cd01858 84 GSLIQLLRQF 93 (157)
T ss_pred HHHHHHHHHH
Confidence 9999998653
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-09 Score=70.45 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=60.9
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCC
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (173)
......+.++|++++|+|+.++...... . +.....+.|+++|+||+|+.+........+........++.+|+++
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 3345567899999999999876543221 1 2222236799999999999643221112233334455689999999
Q ss_pred CCChHHHHHHHHHHh
Q 030693 157 NYNFEKPFLYLARKL 171 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i 171 (173)
+.|++++.+.+...+
T Consensus 86 ~~gi~~L~~~l~~~l 100 (171)
T cd01856 86 GKGVKKLLKAAKKLL 100 (171)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999987753
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=68.85 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=41.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
..++++++|.+|+|||||++++...... ......+++.....+..+ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999998876653 334455566655545443 45789999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=72.68 Aligned_cols=144 Identities=18% Similarity=0.118 Sum_probs=93.4
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhh---C-------Cccc----ccccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT---G-------EFEK----KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~---~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
.+.+.++|.-+|....|||||-.++.. . ++.+ .-....|+++..-.+.++.....+--.|+||+..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 345679999999999999999877432 1 1100 1112446666666666666667788899999998
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-----cHHHHHHHHHcC---
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-----KAKQVTFHRKKN--- 146 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~--- 146 (173)
|-.+...-..+-|++|+|+.++|..--+. +..-.+.+...-..+++++||.|+.++.. ..+..++...++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQT--rEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQT--REHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcch--HHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 87766666677899999999998642111 22223333332334788899999985332 334445666665
Q ss_pred --CcEEEEcc
Q 030693 147 --LQYYEISA 154 (173)
Q Consensus 147 --~~~~~~S~ 154 (173)
++++.-||
T Consensus 208 d~~PvI~GSA 217 (449)
T KOG0460|consen 208 DNTPVIRGSA 217 (449)
T ss_pred CCCCeeecch
Confidence 45666554
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-08 Score=65.80 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=54.6
Q ss_pred CEEEEEEECCChhhhhcHHHHHH--HHhhhcCCCCEEEEEeCCCCccccccHH-HHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHR--DLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~--~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
|++++|+|+.++.+.... ++. .+.. .++|+++|+||+|+.......+ ...+.......++.+|++++.|+.++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 689999999887654432 222 2222 4789999999999965321111 11232334566899999999999999
Q ss_pred HHHHHHH
Q 030693 164 FLYLARK 170 (173)
Q Consensus 164 ~~~i~~~ 170 (173)
++.+.+.
T Consensus 77 ~~~i~~~ 83 (155)
T cd01849 77 ESAFTKQ 83 (155)
T ss_pred HHHHHHH
Confidence 9988653
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=73.42 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=42.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
...++++++|.+|+|||||+|++....... .....|+|.....+.... .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 346899999999999999999987654332 245566666655554432 4789999997
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-08 Score=65.38 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=52.5
Q ss_pred hccCCCEEEEEEECCChhhhh--cHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCC
Q 030693 82 YYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (173)
.+..+|++++|+|+.++.+.. .+..++... ..++|+++|+||+|+.++....+..+.....+..++++|+.++.+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 467899999999999876544 233333322 247899999999999654332333455556678899999998764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=66.55 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=40.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
...+++++|.+++||||+++++.... .....++.|.+.....+..+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKIT---SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence 45789999999999999999977543 44456677766443322222 2689999999
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=71.93 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=43.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
...++++++|.+|+|||||+|++.+.... ...+..|+|.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA-KTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc-ccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 34689999999999999999997765432 3355667776655554432 47899999974
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-08 Score=74.11 Aligned_cols=59 Identities=24% Similarity=0.248 Sum_probs=46.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
...++++++|.||+|||||||+|++... ....+.+|+|.....+..... +.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 4458899999999999999999776554 445667788888777765543 8899999954
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.6e-08 Score=70.07 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=60.2
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCC
Q 030693 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
.....+..+|++++|+|+..+.+.... ++..+ ..+.|+++|+||+|+.+........+.....+..++.+|++++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~---l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 88 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEI---RGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKG 88 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHH---HCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 345567899999999999876543321 11222 1378999999999996532112212223334567899999999
Q ss_pred CChHHHHHHHHHHh
Q 030693 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
.|+.++.+.+.+.+
T Consensus 89 ~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 89 KGVKKIIKAAKKLL 102 (276)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999988887643
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-09 Score=73.92 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=65.6
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH--
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-- 139 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-- 139 (173)
..+.|.|+||++-.......-..-.|++++++..+...--.....-+..+.- ..=..++++-||+|+..++...+..
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei-M~LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI-MKLKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH-hhhceEEEEechhhhhhHHHHHHHHHH
Confidence 4678999999985443322222224666666655532111111111122211 1133578889999998765444333
Q ss_pred --HHHHH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 140 --TFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 140 --~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.|... .+.+++++||.-+.|++-+.++|.+++
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 23322 367899999999999999999998876
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-07 Score=71.02 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=83.9
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030693 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
+...++.+-++|+|+||+|||||++.++...... ++..-..++++ +.++...++|.++|..- ..+ ....+-+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiTv-vsgK~RRiTflEcp~Dl--~~m-iDvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPITV-VSGKTRRITFLECPSDL--HQM-IDVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceEE-eecceeEEEEEeChHHH--HHH-HhHHHhh
Confidence 3445667889999999999999999976543211 22111112222 33577899999998432 111 2233558
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccccHHHH------H-HHHH-cCCcEEEEccCCC
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQV------T-FHRK-KNLQYYEISAKSN 157 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~------~-~~~~-~~~~~~~~S~~~~ 157 (173)
|++++++|.+-.-..+.+ .+++.+..+ +.| ++-|++..|+.......... . |... .++.+|.+|-..+
T Consensus 135 DLVlLlIdgnfGfEMETm-EFLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM-EFLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred heeEEEeccccCceehHH-HHHHHHhhc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 999999998855322222 234444443 555 67888999997644322211 1 2222 3677888886543
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.3e-08 Score=75.75 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=80.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCc--------------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
...-+++++-....|||||+..|+..+- ......+.|+|.....+..-.+.+.+.++|+|||-.|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 3456889999999999999999875421 01112244555555444444577899999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCC
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVD 128 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 128 (173)
+......+=+|++++++|+...-.-+.. ..+++. ..+...++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhh
Confidence 9888888889999999999876432322 122221 12556788899999
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-08 Score=70.47 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=74.1
Q ss_pred EecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh----------hhhcHHHHHHHHhhh--cCCCCEEEE
Q 030693 56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL----------TYKNVPTWHRDLCRV--CENIPIVLC 123 (173)
Q Consensus 56 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~--~~~~p~ivv 123 (173)
.++-..+.|.+.|.+|+..-+.-|.+.+.+.-.+++++.++.-+ ..++.+.++..+..+ ..+.++|++
T Consensus 193 pfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlF 272 (359)
T KOG0085|consen 193 PFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 272 (359)
T ss_pred CcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEE
Confidence 34446678889999999988888999988887777766665321 222233344444443 268999999
Q ss_pred EeCCCCccccc------------------cHHHHHHHH----HcCC------cEEEEccCCCCChHHHHHHHHHHhh
Q 030693 124 GNKVDVKNRQV------------------KAKQVTFHR----KKNL------QYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 124 ~nK~Dl~~~~~------------------~~~~~~~~~----~~~~------~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+||.|+..+.. .....++.. ..+- --..+.|.+.+|+.-+|.++...++
T Consensus 273 LNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiL 349 (359)
T KOG0085|consen 273 LNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 349 (359)
T ss_pred echhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHH
Confidence 99999754221 111112221 1111 1234567788899999988877654
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-08 Score=68.44 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=51.7
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCCh-------hhhhcHH---HHHHHHhhh--cCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-------LTYKNVP---TWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-------~s~~~~~---~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..++|+++|.+|+..-+.-|...+....++|+|+..+.- .+-+.++ +++..+... .....+|+++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 456799999999999999999999999999999987742 1222233 233333222 1467899999999
Q ss_pred CCc
Q 030693 128 DVK 130 (173)
Q Consensus 128 Dl~ 130 (173)
|+.
T Consensus 280 Dll 282 (379)
T KOG0099|consen 280 DLL 282 (379)
T ss_pred HHH
Confidence 974
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.3e-08 Score=64.24 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=39.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
...+++++|.+|+|||||+|.+....... .....+++........+ ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 45889999999999999999977544222 23334555554444432 35889999983
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-08 Score=75.54 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=98.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh--CCc------c-c-------ccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT--GEF------E-K-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~--~~~------~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
-.+|.++..-.+||||..++++. +.. . . ......|++...--+.++.+++.+.++||||+-.|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 35789999999999999998653 111 0 0 011234677777777888899999999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (173)
-.....++--|+++.|+|.+..-..+.+.-|...-+. ++|...++||+|...............+.+.
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrqadk~---~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF---KIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc---CCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 8888899999999999999987666777767554322 7898999999997765554444444444443
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=68.17 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCCcc-cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC
Q 030693 69 TAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (173)
Q Consensus 69 ~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (173)
.|||. +........+..+|++++|+|+.++.+... .++.... .+.|+++|+||+|+.+........+.....+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~ 81 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLADPEVTKKWIEYFEEQGI 81 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence 35543 222334456789999999999987654332 1222222 37899999999999653211122222334457
Q ss_pred cEEEEccCCCCChHHHHHHHHHH
Q 030693 148 QYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 148 ~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
.++.+|++++.|+.++.+.+.+.
T Consensus 82 ~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 82 KALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred eEEEEECCCcccHHHHHHHHHHH
Confidence 78999999999999999887654
|
|
| >KOG4273 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.3e-07 Score=61.98 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=72.2
Q ss_pred eEEEEEcCCCC--CHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 14 FKLVIVGDGGT--GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 14 ~~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..++++|.+|+ ||.+++.+|....+.....+.-.+.+..+++.-......+.+.=.+-...+.-.+........++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 45789999998 9999999987766655544444455555555322222233332222223333333334455688999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
|||.+....+..++.|+....-..-++ .+.++||.|..
T Consensus 85 vfdlse~s~l~alqdwl~htdinsfdi-llcignkvdrv 122 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDINSFDI-LLCIGNKVDRV 122 (418)
T ss_pred EEeccchhhhHHHHhhccccccccchh-heecccccccc
Confidence 999999999999999987543321122 34567898853
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-06 Score=54.77 Aligned_cols=145 Identities=20% Similarity=0.195 Sum_probs=75.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCC-Ccc--------------ccc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQE--------------KFG 76 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-G~~--------------~~~ 76 (173)
..+||.+.|+||+||||++.++.. ....... +.+ -+.+.++..++...-|.+.|+. |.+ +|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e-~L~~~g~-kvg-Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE-KLREKGY-KVG-GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH-HHHhcCc-eee-eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 468999999999999999988542 2222211 121 2333445556666777888876 311 111
Q ss_pred Cc-----------chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHH
Q 030693 77 GL-----------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRK 144 (173)
Q Consensus 77 ~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 144 (173)
-. .+..+..+|++| +|---+-.+. ..++.+.+.+.. ...|++..+.+-+. ....+-.+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr------~P~v~~ik~ 151 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR------HPLVQRIKK 151 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC------ChHHHHhhh
Confidence 10 112234456554 4544332221 123334444333 47888877776543 223333444
Q ss_pred cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 145 KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 145 ~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+.-++. .+.+|=+.+++.+.+.+
T Consensus 152 ~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 152 LGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred cCCEEEE---EccchhhHHHHHHHHHh
Confidence 4444443 44455557777776654
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=69.13 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=97.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC--Cc------------cccccc---------------ceeEEEEEEEEEecCc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EF------------EKKYEP---------------TIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~------------~~~~~~---------------~~~~~~~~~~~~~~~~ 60 (173)
+...++++++|...+||||+-..++.- .. ...... .-|-+...-...++..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 456799999999999999997764431 00 000000 0011222222233445
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hhhcH--HHHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
...|++.|.||+..|......-..++|..++|+++...+ .|+.- ......+.+...-...++++||+|-+.-+..
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 678999999999999888777788999999999986432 22221 1233344444345568889999997653332
Q ss_pred HH--------HHHHHHHcC------CcEEEEccCCCCChHHHH
Q 030693 136 AK--------QVTFHRKKN------LQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 136 ~~--------~~~~~~~~~------~~~~~~S~~~~~~i~~~~ 164 (173)
.+ ...+.+..+ ..|+++|..+|.++.+..
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 22 223444322 458999999999988754
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-07 Score=68.22 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=57.0
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc-HHHH----HHHHHcCC---cEEEEccCCC
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQV----TFHRKKNL---QYYEISAKSN 157 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~----~~~~~~~~---~~~~~S~~~~ 157 (173)
.+.+++|+|+.+.. ..|...+.+...+.|+++|+||+|+...... ++.. .++...++ .++.+||+++
T Consensus 70 ~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g 144 (365)
T PRK13796 70 DALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG 144 (365)
T ss_pred CcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC
Confidence 34999999998743 2345555555558899999999999654322 2222 23445565 5799999999
Q ss_pred CChHHHHHHHHHH
Q 030693 158 YNFEKPFLYLARK 170 (173)
Q Consensus 158 ~~i~~~~~~i~~~ 170 (173)
.|++++++.+.+.
T Consensus 145 ~gI~eL~~~I~~~ 157 (365)
T PRK13796 145 HGIDELLEAIEKY 157 (365)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998653
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=71.08 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc----ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
.++.++|.+|+|||||+|+|+.... .....+..|+|.....+..++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999875331 1123456677777777665433 3799999963
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.8e-07 Score=65.84 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=57.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec---------------CcEEEEEEEeCCCc--
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------------CGKIRFYCWDTAGQ-- 72 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~D~~G~-- 72 (173)
+...+++.++|.|++|||||.|.+.........-|...++...-.+.+. .....++++|++|-
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 4467899999999999999999987766654444433222222222211 12467899999873
Q ss_pred --ccccCcchhh---ccCCCEEEEEEECCC
Q 030693 73 --EKFGGLRDGY---YIHGQCAIIMFDVTA 97 (173)
Q Consensus 73 --~~~~~~~~~~---~~~~~~~i~v~d~~~ 97 (173)
.....+-..| ++++|+++-|+++..
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2333444444 567899999988763
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-07 Score=69.24 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc----ccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
.+++++|.+|+|||||+|+++.... .....+..|+|.....+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 4899999999999999999876432 123345667777666665432 257999999653
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-07 Score=68.73 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccc--cc----cceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK--YE----PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
.++++|.+|+|||||+|+|+....... .. ....+|....-+.+.+.. .++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 378999999999999999876533211 01 111233333333443222 489999987654
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-07 Score=77.69 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=65.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCccccc----c--cceeEEEEEEEEEecCcEEEEEEEeCCCc----c----cccCcchh
Q 030693 16 LVIVGDGGTGKTTFVKRHLTGEFEKKY----E--PTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----E----KFGGLRDG 81 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~----~~~~~~~~ 81 (173)
.+|+|++|+||||++.. .+-.++-.. . ...+-+.. ....+. -.-.++||+|. + .....|..
T Consensus 114 YlviG~~gsGKtt~l~~-sgl~~pl~~~~~~~~~~~~~~t~~-c~wwf~---~~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQN-SGLKFPLAERLGAAALRGVGGTRN-CDWWFT---DEAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHh-CCCCCcCchhhccccccCCCCCcc-cceEec---CCEEEEcCCCccccCCCcccccHHHHHH
Confidence 68999999999999998 443332211 0 01111111 111111 13458999992 1 22334666
Q ss_pred hcc---------CCCEEEEEEECCChh-----hh----hcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc
Q 030693 82 YYI---------HGQCAIIMFDVTARL-----TY----KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131 (173)
Q Consensus 82 ~~~---------~~~~~i~v~d~~~~~-----s~----~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~ 131 (173)
++. -.+++|+++|+.+-- .. ..++..+.++.+.. -+.||.+++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 543 379999999998532 11 23344445554443 4899999999999864
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-06 Score=60.66 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=51.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--CcccccccceeEEEEEEEEEec---CcEEEEEEEeCCCcccccC------cc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN---CGKIRFYCWDTAGQEKFGG------LR 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~G~~~~~~------~~ 79 (173)
.+-.-|+|+|++++|||+|+|++++. .+... .....+|...+..... +....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~-~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVM-DTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEec-CCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 34567899999999999999998877 44322 1112222222222111 2356899999999643322 12
Q ss_pred hhhccC--CCEEEEEEECCC
Q 030693 80 DGYYIH--GQCAIIMFDVTA 97 (173)
Q Consensus 80 ~~~~~~--~~~~i~v~d~~~ 97 (173)
...+.. ++++|+..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 222333 788888777664
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-07 Score=61.82 Aligned_cols=59 Identities=27% Similarity=0.310 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccc------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
-.++++|++|+|||||+|.|+...... .......+|....-+..+.. ..++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 468999999999999999987653211 11111123333333333322 367899996544
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=65.60 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=58.2
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHH-HcCCcEEEEccCCCCChH
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-KKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~ 161 (173)
..++|.+++|+++...-....+..++...... ++|.++|+||+||.+... .....+.. ..+.+++.+|++++.|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~-~~~~~~~~~~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDAE-EKIAEVEALAPGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCHH-HHHHHHHHhCCCCcEEEEECCCCccHH
Confidence 57889999999997443434445555555444 788899999999975411 11112221 346789999999999999
Q ss_pred HHHHHHH
Q 030693 162 KPFLYLA 168 (173)
Q Consensus 162 ~~~~~i~ 168 (173)
++.+++.
T Consensus 187 ~L~~~L~ 193 (356)
T PRK01889 187 VLAAWLS 193 (356)
T ss_pred HHHHHhh
Confidence 9998874
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-06 Score=61.24 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=56.4
Q ss_pred cEEEEEEEeCCCcccccCc----chhh--------ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGL----RDGY--------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
..+.+.++||||....... ...+ -...+..++|.|++... +.+.+ ...+.+. -.+--+|+||.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh--CCCCEEEEECC
Confidence 4478999999996432211 1111 12467889999998543 22222 1222221 12346778999
Q ss_pred CCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
|...... ...+.+...+.++..++ +|++++++
T Consensus 270 D~t~~~G--~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 270 DGTAKGG--VVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCCcc--HHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 9654422 23466677799988887 77777654
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.6e-07 Score=67.59 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCccccccccee-------EEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-------VEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
.++++|++|+|||||+|+|+...... .....+ +|....-+...+.. .++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~-t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELR-VGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccc-cccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 37999999999999999987543221 111112 44444444443322 68999996543
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=65.42 Aligned_cols=81 Identities=17% Similarity=-0.018 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc-cc-ccccc-eeEEEEEEEEEecC---------------cEEEEEEEeCCCcccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEF-EK-KYEPT-IGVEVHPLDFFTNC---------------GKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~-~~-~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~D~~G~~~~ 75 (173)
+++.++|.|++|||||.+.+..... .. .+..+ ......... +.+ ....+.+.|+||....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~--v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVN--PSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEE--echhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 7899999999999999999765554 22 22111 111111111 111 1246789999995432
Q ss_pred ----cCcch---hhccCCCEEEEEEECC
Q 030693 76 ----GGLRD---GYYIHGQCAIIMFDVT 96 (173)
Q Consensus 76 ----~~~~~---~~~~~~~~~i~v~d~~ 96 (173)
..+.. ..++.+|++++|++..
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 12222 2467899999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=62.15 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccc----ccccceeEEEEEEEEEecCcEEEEEEEeCCCc-------ccccCcc--
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EKFGGLR-- 79 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-------~~~~~~~-- 79 (173)
.++|+.+|..|.|||||++.|..-++.. ...|.......+......+..+++++.||.|. +.|+.+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 4899999999999999999977655432 23334444444444444556688999999982 2222211
Q ss_pred ------------------hhhccC--CCEEEEEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 80 ------------------DGYYIH--GQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 80 ------------------~~~~~~--~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
-..++. .++++|.+..+ +.++..+.- ....+.. .+.+|-++-|.|...
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Lds---kVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLDS---KVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHhh---hhhhHHHHHHhhhhh
Confidence 111333 46666666655 345554442 2333333 555677778988654
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.9e-06 Score=59.09 Aligned_cols=95 Identities=12% Similarity=-0.029 Sum_probs=56.9
Q ss_pred cEEEEEEEeCCCcccccCcch-------hh-----ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRD-------GY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~-------~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
..+.+.++||||......... .. -...|..++|+|++... +.+. ....+.+.. .+--+++||.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~--~~~g~IlTKl 227 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV--GLTGIILTKL 227 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC--CCCEEEEEcc
Confidence 347899999999654322110 01 12378999999998542 2222 223333221 1346778999
Q ss_pred CCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
|...+.. ...+.....+.++..++ +|++++++
T Consensus 228 De~~~~G--~~l~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 228 DGTAKGG--IILSIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred CCCCCcc--HHHHHHHHHCcCEEEEe--CCCChHhC
Confidence 9866533 23455556678888887 77777655
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.2e-07 Score=65.79 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=56.1
Q ss_pred EEEEEEEeCCCcccccC-cc---hhh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGG-LR---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... +. ..+ ....+..++|.|+.... +.......+.... + .--+++||.|......
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~-~-~~giIlTKlD~~~~~G 296 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV-G-IDGVILTKVDADAKGG 296 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC-C-CCEEEEeeecCCCCcc
Confidence 35789999999653221 11 111 12468889999997643 2222122222211 2 2356789999866433
Q ss_pred cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
. ....+...+.++..++ +|++++++.
T Consensus 297 ~--~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 297 A--ALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred H--HHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 2 3455556688888886 788887654
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.6e-06 Score=62.16 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=47.3
Q ss_pred EEEEEEEeCCCcccccC-cchh---h--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGG-LRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... +... + ....+-+++|.|++..... ......+.+. -.+--+++||.|...+..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~--~~~~g~IlTKlD~~argG 256 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS--VDVGSVIITKLDGHAKGG 256 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc--cCCcEEEEECccCCCCcc
Confidence 57899999999543221 1111 1 2246789999998755322 2222333332 224567789999865432
Q ss_pred cHHHHHHHHHcCCcEEEE
Q 030693 135 KAKQVTFHRKKNLQYYEI 152 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~ 152 (173)
. ........+.++..+
T Consensus 257 ~--aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 257 G--ALSAVAATKSPIIFI 272 (429)
T ss_pred H--HhhhHHHHCCCeEEE
Confidence 2 234444555555544
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-05 Score=63.29 Aligned_cols=66 Identities=15% Similarity=0.306 Sum_probs=40.7
Q ss_pred EEEEEeCCCccc---ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccc
Q 030693 63 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (173)
Q Consensus 63 ~~~~~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 132 (173)
.+.+.|.||-.- ..+-...+...+|++|+|.++.+..... .++++....+ .+| +.++.||.|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~---~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSE---EKPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhc---cCCcEEEEechhhhhcc
Confidence 466888898543 2333445667899999999987654322 2334444433 355 5566678897653
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.5e-06 Score=65.72 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=85.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCc-----ccc-----------cccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEF-----EKK-----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
.-+|.+.-.-.+||||+-++.+...- .+. .....|++...--..+....+.+.++||||+-.|.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 35677778888999999998663210 000 01112334433333344457889999999999998
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHH
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF 141 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 141 (173)
.--...++--|+++++++...+-.-+...-| ++..++ ++|-+.++||.|......-.-...+
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry--~vP~i~FiNKmDRmGa~~~~~l~~i 180 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY--NVPRICFINKMDRMGASPFRTLNQI 180 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc--CCCeEEEEehhhhcCCChHHHHHHH
Confidence 8888889999999999999877544554445 344454 9999999999998765543333333
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-06 Score=62.19 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccc--c----ccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK--Y----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
-.++++|.+|+|||||+|+++....... . ....++|....-+... . -.++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~---~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-G---GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-C---cEEEeCCCcccc
Confidence 4689999999999999999875432111 1 1111244443334432 2 268999997654
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-06 Score=45.55 Aligned_cols=43 Identities=14% Similarity=0.352 Sum_probs=30.4
Q ss_pred CCEEEEEEECCChh--hhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 86 GQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 86 ~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.++++|++|++... +.+.-..++..++...+++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 68999999999654 55555678888888888999999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.7e-06 Score=58.67 Aligned_cols=94 Identities=18% Similarity=0.043 Sum_probs=68.4
Q ss_pred ccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH--HHHHHHHHcCCcEEE
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYE 151 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~ 151 (173)
...+.+.-..+.|-.++|+.+.+|+ +...+.+++-..... ++..++++||+||.+..... +........+.+.+.
T Consensus 69 kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 69 KNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF 146 (301)
T ss_pred cCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence 3344555556688888888888876 444444554444443 77778889999998765555 345677788999999
Q ss_pred EccCCCCChHHHHHHHHHH
Q 030693 152 ISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~ 170 (173)
+|+++++++.++.+.+...
T Consensus 147 ~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 147 VSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ecCcCcccHHHHHHHhcCC
Confidence 9999999999999887643
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=62.14 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCc------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
..+++|.+|+|||||+|+|..... .......-.+|....-+.+++.+ .++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 578899999999999999775322 11111222344444444443222 468999987654
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.27 E-value=6e-06 Score=54.32 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=36.5
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.+.+.++||+|.... ...++..+|.++++....-.+.+.-++- ..+. ..=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh-----hcCEEEEeCCC
Confidence 578899999986532 2348889999999888773332222211 2221 12277889987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.7e-06 Score=62.05 Aligned_cols=59 Identities=25% Similarity=0.203 Sum_probs=36.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccccc--c----cceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY--E----PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
-.++++|++|+|||||+|.+++....... . ...+++.....+..... ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 46899999999999999997754332111 1 11123333333333322 258999998765
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-05 Score=52.42 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeC-CCc---------------cccc--
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT-AGQ---------------EKFG-- 76 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~G~---------------~~~~-- 76 (173)
||++.|++|+||||++.+++..... ...+..|.-. .....++...-|.+.|. .|. .+|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~Gf~t--~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGGFYT--EEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEEEEE--EEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc-cCCccceEEe--ecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 6899999999999999996643211 1122333222 23334455555666666 331 0111
Q ss_pred -----Cc----chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcC
Q 030693 77 -----GL----RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 146 (173)
Q Consensus 77 -----~~----~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (173)
.. ....+..++ ++++|---+-.+ ....|.+.+.... +++|++.++.+.- ...-..++....+
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~-----~~~~l~~i~~~~~ 149 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRS-----DNPFLEEIKRRPD 149 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS-------SCCHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCC-----CcHHHHHHHhCCC
Confidence 11 111123445 566665433111 1123333443332 4788888887763 1112345566667
Q ss_pred CcEEEEccCCCCCh
Q 030693 147 LQYYEISAKSNYNF 160 (173)
Q Consensus 147 ~~~~~~S~~~~~~i 160 (173)
+.+++++..+.+.+
T Consensus 150 ~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 150 VKIFEVTEENRDAL 163 (168)
T ss_dssp SEEEE--TTTCCCH
T ss_pred cEEEEeChhHHhhH
Confidence 88888877665544
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=61.89 Aligned_cols=58 Identities=21% Similarity=0.105 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccccc--cc----ceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EP----TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
..++++|++|+|||||+|.++........ .. ...+|.....+..++. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 36899999999999999997754322110 00 0113333333333322 36899999764
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.7e-06 Score=56.64 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=37.4
Q ss_pred EEEEEeC-CCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 63 RFYCWDT-AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 63 ~~~~~D~-~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
.+.+.|| +|.+.+ .+....++|.+++|+|.+.+ |+....+. .++.+...-.++.+|+||.|-.
T Consensus 135 e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~~-sl~taeri-~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSYK-SLRTAERI-KELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhh---ccccccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHHhCCceEEEEEeeccch
Confidence 3445555 234432 34456689999999998754 33433332 2332222237899999999965
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.7e-06 Score=53.93 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCcccccCcchh--------hccCCCEEEEEEECCChhhh-hcHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030693 61 KIRFYCWDTAGQEKFGGLRDG--------YYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (173)
.....++|++|-......... ..-..+.+++++|+...... .....+..++... + ++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a--d---~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA--D---RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC--C---EEEEecccC
Confidence 356788999996433322221 22357899999998654321 1222333444332 2 667899996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-05 Score=53.21 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=45.7
Q ss_pred EEEEEEEeCCCcccccCc----chhh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGGL----RDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++|++|....... ...+ ....+.+++|+|...... ...+...+.+.. + ..-++.||.|...+..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~-~-~~~viltk~D~~~~~g 156 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL-G-ITGVILTKLDGDARGG 156 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC-C-CCEEEEECCcCCCCcc
Confidence 456888999996432111 1111 124899999999875432 223334443332 2 2456779999866443
Q ss_pred cHHHHHHHHHcCCcE
Q 030693 135 KAKQVTFHRKKNLQY 149 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~ 149 (173)
.. .+.+...+.++
T Consensus 157 ~~--~~~~~~~~~p~ 169 (173)
T cd03115 157 AA--LSIRAVTGKPI 169 (173)
T ss_pred hh--hhhHHHHCcCe
Confidence 22 33555555554
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.7e-06 Score=64.36 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=43.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
.+.|.++|.||+||||.||.|.+++-.. ...|+|-|..-.++.+. -.+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls---~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLS---PSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcC---CCceecCCCC
Confidence 5899999999999999999988777554 47788877766666543 2467899999
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00011 Score=49.58 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=29.7
Q ss_pred CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 116 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 116 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+.|++++.+|.... .....+....+..+++++ .+|=+++.+.+.+.+
T Consensus 125 ~~~~~i~v~h~~~~~-----~~~~~i~~~~~~~i~~~~---~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 125 SEKPVIATLHRRSVH-----PFVQEIKSRPGGRVYELT---PENRDSLPFEILNRL 172 (174)
T ss_pred CCCeEEEEECchhhH-----HHHHHHhccCCcEEEEEc---chhhhhHHHHHHHHH
Confidence 378999999985321 123345555666777774 445557777777655
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=51.45 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=62.9
Q ss_pred EEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCC
Q 030693 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97 (173)
Q Consensus 18 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 97 (173)
.-|.+|+|||++.-.+... +......+.-.+.+. ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~-~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALA-LAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHH-HHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 3467899999997664322 111111122122111 111122789999999743 334456788999999999976
Q ss_pred hhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 98 RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 98 ~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
..++..+...++.+.+.....++.+++|+.+..
T Consensus 78 ~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 344444444555554443456788999999754
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.8e-06 Score=69.29 Aligned_cols=114 Identities=19% Similarity=0.160 Sum_probs=63.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccc-cceeEEEEEEEEEec-CcEEEEEEEeCCCcc--------cccCcchhh---
Q 030693 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTN-CGKIRFYCWDTAGQE--------KFGGLRDGY--- 82 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~--------~~~~~~~~~--- 82 (173)
-+|+|++|+||||++.. .+-.++-... ...+..... +..++ .-+-.-.++||.|-. .-+..|..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 57899999999999876 4444432110 011111110 11111 112245688998821 223345544
Q ss_pred ------ccCCCEEEEEEECCChhhh---------hcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc
Q 030693 83 ------YIHGQCAIIMFDVTARLTY---------KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131 (173)
Q Consensus 83 ------~~~~~~~i~v~d~~~~~s~---------~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~ 131 (173)
.+..+++|+.+|+.+--+. ..++.-+.++.... -..|+.+++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2357999999999853211 12222333443332 4899999999999865
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.7e-05 Score=59.92 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=76.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC------------cccc--cccceeEEEEEEEEE----------------ecCcEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGE------------FEKK--YEPTIGVEVHPLDFF----------------TNCGKI 62 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~------------~~~~--~~~~~~~~~~~~~~~----------------~~~~~~ 62 (173)
-.++.++.....|||||...|+... +... .....++++...-+. -++..+
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 3567888999999999999876531 1100 011112332221111 133467
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
-+.++|.||+-.|.+.....++-.|++++|+|.-+.-..+.-.-+...+.+ ++.-+++.||.|..
T Consensus 99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh---hccceEEeehhhHH
Confidence 889999999999999988999999999999999887655554444455544 33445668999953
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.3e-06 Score=59.52 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=42.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCc----ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
..++++.|+|.||+|||+|+|++..... ........|++....+...-...-.+.+.||||.-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil 207 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGIL 207 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcC
Confidence 3568999999999999999998653221 12233455677666553222233458899999954
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=60.63 Aligned_cols=92 Identities=8% Similarity=0.024 Sum_probs=50.5
Q ss_pred EEEEEEEeCCCcccccCc----chhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGGL----RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|....... ...++. ..+.+++|+|++... +++......+... + .--+++||.|......
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~--~-idglI~TKLDET~k~G 394 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI--H-IDGIVFTKFDETASSG 394 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC--C-CCEEEEEcccCCCCcc
Confidence 368999999996432211 122222 346778888876432 2333333444331 1 2356689999876433
Q ss_pred cHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 135 KAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
. ..+++...+.++..++ +|+++.
T Consensus 395 ~--iLni~~~~~lPIsyit--~GQ~VP 417 (436)
T PRK11889 395 E--LLKIPAVSSAPIVLMT--DGQDVK 417 (436)
T ss_pred H--HHHHHHHHCcCEEEEe--CCCCCC
Confidence 2 3466666677765553 344444
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.3e-05 Score=57.02 Aligned_cols=138 Identities=12% Similarity=-0.005 Sum_probs=68.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccc---ccccceeEEEE---------------EEEEE-e-----------cCcEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVH---------------PLDFF-T-----------NCGKI 62 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~---------------~~~~~-~-----------~~~~~ 62 (173)
.-.++++|++|+||||++..|....... ........+.. ...+. . .....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3578899999999999999876431100 00000101110 00000 0 11345
Q ss_pred EEEEEeCCCcccccCcc---hhhc---cCCCEEEEEEECCChh-hhhcHHHHHHHHhhhc-CC--CCEEEEEeCCCCccc
Q 030693 63 RFYCWDTAGQEKFGGLR---DGYY---IHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC-EN--IPIVLCGNKVDVKNR 132 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~---~~~~---~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~-~~--~p~ivv~nK~Dl~~~ 132 (173)
.+.++||+|........ ...+ ....-.++|++++... ....+.+.+....... .. -+--+++||.|....
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 78999999965332211 1112 2234568899988643 3233322222221110 00 123466799997664
Q ss_pred cccHHHHHHHHHcCCcEEEE
Q 030693 133 QVKAKQVTFHRKKNLQYYEI 152 (173)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~ 152 (173)
-.. ..++....+.++..+
T Consensus 297 ~G~--~l~~~~~~~lPi~yv 314 (374)
T PRK14722 297 LGG--VLDTVIRYKLPVHYV 314 (374)
T ss_pred ccH--HHHHHHHHCcCeEEE
Confidence 322 345555566665554
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00013 Score=57.14 Aligned_cols=91 Identities=11% Similarity=0.154 Sum_probs=49.5
Q ss_pred EEEEEEEeCCCcccccCcchh---hcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030693 61 KIRFYCWDTAGQEKFGGLRDG---YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
.+.+.++||+|.......... .+. .....++|++.+. +...+...+..+.. ..+.-+|+||.|.....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~---~~~~gvILTKlDEt~~l-- 500 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH---AKPQGVVLTKLDETGRF-- 500 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh---hCCeEEEEecCcCccch--
Confidence 468899999996432211000 011 1234566677653 22333333444333 34567889999986543
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 136 AKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
-.........+.++..++ +|..+
T Consensus 501 G~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 501 GSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hHHHHHHHHhCCCEEEEe--CCCCc
Confidence 234566667777766663 34444
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.3e-06 Score=55.94 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=42.9
Q ss_pred EEEEEEEeCCCcccccCc--c-hhh--ccCCCEEEEEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGGL--R-DGY--YIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~--~-~~~--~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.....++++.|......+ . ..+ .-..+.++.|+|+..-.....+.. +..++... + ++++||+|+.+...
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A--D---vIvlnK~D~~~~~~ 158 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA--D---VIVLNKIDLVSDEQ 158 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---S---EEEEE-GGGHHHH-
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc--C---EEEEeccccCChhh
Confidence 356677788885444333 0 111 224689999999976533333333 33344322 2 67789999987663
Q ss_pred c-HHHHHHHHHc
Q 030693 135 K-AKQVTFHRKK 145 (173)
Q Consensus 135 ~-~~~~~~~~~~ 145 (173)
. ....+..++.
T Consensus 159 ~i~~~~~~ir~l 170 (178)
T PF02492_consen 159 KIERVREMIREL 170 (178)
T ss_dssp -HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3 4444444443
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3e-06 Score=58.32 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=47.6
Q ss_pred EEEEEEEeCCCcccccC----cchhhc--cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGG----LRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
++.+.++||+|...... ....++ ...+-+++|.+++.... .+. ......+.. +. --+++||.|...+..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~-~~-~~lIlTKlDet~~~G 157 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAF-GI-DGLILTKLDETARLG 157 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHS-ST-CEEEEESTTSSSTTH
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhcc-cC-ceEEEEeecCCCCcc
Confidence 36799999999543321 111111 15678999999886542 222 222222221 22 245589999866542
Q ss_pred cHHHHHHHHHcCCcEEEEc
Q 030693 135 KAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (173)
....++...+.++-.++
T Consensus 158 --~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 158 --ALLSLAYESGLPISYIT 174 (196)
T ss_dssp --HHHHHHHHHTSEEEEEE
T ss_pred --cceeHHHHhCCCeEEEE
Confidence 24566667777765553
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.5e-06 Score=60.39 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=44.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 72 (173)
.+.+++.|+|.|++||||+||+|..+.. .....+.|.|..-.++..+ -.+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheecc---CCceeccCCce
Confidence 4569999999999999999999876664 4446677777665566544 35788999994
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.1e-05 Score=57.95 Aligned_cols=77 Identities=13% Similarity=0.064 Sum_probs=47.3
Q ss_pred EecCcE-EEEEEEeCCCcc-------------cccCcchhhccCCCEEEEEEECCChhhh-hcHHHHHHHHhhhcCCCCE
Q 030693 56 FTNCGK-IRFYCWDTAGQE-------------KFGGLRDGYYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPI 120 (173)
Q Consensus 56 ~~~~~~-~~~~~~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ 120 (173)
.+.+.+ -...+.|.||.- ..-.+..+|..+.+++|+|+--..-+.- ..+.++...+... +...
T Consensus 405 tVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRT 482 (980)
T KOG0447|consen 405 NVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRT 482 (980)
T ss_pred eecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCee
Confidence 334433 357789999932 1224567788899999999864432211 1223334443332 5667
Q ss_pred EEEEeCCCCccccc
Q 030693 121 VLCGNKVDVKNRQV 134 (173)
Q Consensus 121 ivv~nK~Dl~~~~~ 134 (173)
|+|++|.|+...+.
T Consensus 483 IfVLTKVDlAEknl 496 (980)
T KOG0447|consen 483 IFVLTKVDLAEKNV 496 (980)
T ss_pred EEEEeecchhhhcc
Confidence 99999999987543
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00012 Score=56.05 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCc---cccccc--------------------ceeEEEEEEEEE-------ecCcEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEF---EKKYEP--------------------TIGVEVHPLDFF-------TNCGKI 62 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~--------------------~~~~~~~~~~~~-------~~~~~~ 62 (173)
.-.++++|++|+||||++..+..... ...... ..|.......-. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999987654210 000000 001111000000 011235
Q ss_pred EEEEEeCCCcccccC----cchhhc--cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH
Q 030693 63 RFYCWDTAGQEKFGG----LRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (173)
.+.++||+|-..... ....+. ....-.++|+|++... +.+......+.. --+--+++||.|.......
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~---~~~~~~I~TKlDEt~~~G~- 344 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQG---HGIHGCIITKVDEAASLGI- 344 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcC---CCCCEEEEEeeeCCCCccH-
Confidence 678999998543211 111111 1234677888888432 223333333322 1123566899998664322
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCh
Q 030693 137 KQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 137 ~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
...++...+.++..++ +|.++
T Consensus 345 -~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 345 -ALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred -HHHHHHHhCCCEEEEE--CCCCc
Confidence 3456666676666553 44444
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=56.51 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=48.1
Q ss_pred EEEEEEEeCCCcccccC-cch---hh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGG-LRD---GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... ... .+ .-..+.+++|+|+... +++.+....+.+.. + ..-+|+||.|...+..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~-~-i~giIlTKlD~~~rgG 257 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL-G-LTGVILTKLDGDARGG 257 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC-C-CCEEEEeCccCccccc
Confidence 46799999999543211 111 11 1246778999998754 22333333333321 1 1356679999755433
Q ss_pred cHHHHHHHHHcCCcEEEEcc
Q 030693 135 KAKQVTFHRKKNLQYYEISA 154 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~ 154 (173)
. ........+.++..+..
T Consensus 258 ~--alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 258 A--ALSIRAVTGKPIKFIGT 275 (433)
T ss_pred H--HHHHHHHHCcCEEEEeC
Confidence 2 44556666777665543
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0002 Score=55.18 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcccccCc----ch--hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc
Q 030693 62 IRFYCWDTAGQEKFGGL----RD--GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~----~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~ 134 (173)
..+.++||+|....... .. .....+|.+++|+|++... +.......+.. ..+ .-+|+||.|...+..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~---~l~i~gvIlTKlD~~a~~G 249 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE---AVGIGGIIITKLDGTAKGG 249 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh---cCCCCEEEEecccCCCccc
Confidence 47899999996543211 01 1133578999999987652 22222223322 333 356789999765432
Q ss_pred cHHHHHHHHHcCCcEEEEc
Q 030693 135 KAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (173)
.........+.++..++
T Consensus 250 --~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 250 --GALSAVAETGAPIKFIG 266 (437)
T ss_pred --HHHHHHHHHCcCEEEEe
Confidence 23455556666665554
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00028 Score=54.32 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=50.7
Q ss_pred EEEEEEEeCCCccccc----Ccchhhcc---CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc
Q 030693 61 KIRFYCWDTAGQEKFG----GLRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (173)
.+.+.++||+|..... .....++. ...-.++|++++... ..+......+... + +--+++||.|.....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~--~-~~~vI~TKlDet~~~ 373 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL--P-LDGLIFTKLDETSSL 373 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC--C-CCEEEEecccccccc
Confidence 4688999999964332 11222333 234667788876432 2233323333221 1 225778999986543
Q ss_pred ccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 134 VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
. ...++....+.++..++ +|.++
T Consensus 374 G--~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 374 G--SILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred c--HHHHHHHHHCCCEEEEe--CCCCC
Confidence 3 35567777777766664 44444
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.4e-05 Score=55.96 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=67.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccccccccee-EEEEEEEE-----------------Ee------------cCcEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDF-----------------FT------------NCGKI 62 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~-----------------~~------------~~~~~ 62 (173)
.-.|+++|+.|+||||-+-.|.....-.......+ ++.+...+ .+ .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56789999999999988777554332011111111 11111110 00 11346
Q ss_pred EEEEEeCCCcccccC----cchhhccC--CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCE-EEEEeCCCCcccccc
Q 030693 63 RFYCWDTAGQEKFGG----LRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVK 135 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~----~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~ 135 (173)
.+.++||.|...+.. ....++.. ..-..+|++++... +++..-+..+. ..|+ -+++||.|.......
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~----~~~i~~~I~TKlDET~s~G~ 356 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFS----LFPIDGLIFTKLDETTSLGN 356 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhc----cCCcceeEEEcccccCchhH
Confidence 789999999654432 23333333 34455577776432 34443334433 3333 355799997654322
Q ss_pred HHHHHHHHHcCCcEEEE
Q 030693 136 AKQVTFHRKKNLQYYEI 152 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~ 152 (173)
..+...+.+.++-.+
T Consensus 357 --~~s~~~e~~~PV~Yv 371 (407)
T COG1419 357 --LFSLMYETRLPVSYV 371 (407)
T ss_pred --HHHHHHHhCCCeEEE
Confidence 244455555554443
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00037 Score=53.58 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=49.5
Q ss_pred EEEEEEEeCCCcccccC-cch---hh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGG-LRD---GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... ... .+ .-..+.+++|+|+.... ........+.... + ..-++.||.|...+..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v-~-i~giIlTKlD~~~~~G 256 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL-G-LTGVVLTKLDGDARGG 256 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC-C-CCEEEEeCccCccccc
Confidence 46789999999543211 111 11 22468889999987542 3333334443322 1 2356689999755443
Q ss_pred cHHHHHHHHHcCCcEEEEcc
Q 030693 135 KAKQVTFHRKKNLQYYEISA 154 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~ 154 (173)
. ....+...+.++..+..
T Consensus 257 ~--~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 257 A--ALSVRSVTGKPIKFIGV 274 (428)
T ss_pred H--HHHHHHHHCcCEEEEeC
Confidence 3 45566666777666543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.3e-05 Score=53.98 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (173)
.-+++.||+|+||||+++.|+... ....+...+|+.+.....++..|.|.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fv 54 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFV 54 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeC
Confidence 457889999999999999977555 33233333455555555666555543
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00085 Score=49.74 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=49.8
Q ss_pred EEEEEEeCCCcccccCcchhhcc--------CCCEEEEEEECCChhhhhc-HHH-HHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYI--------HGQCAIIMFDVTARLTYKN-VPT-WHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~~-~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
....++++.|..........+.. ..|+++-|+|+..-..... ... ...++... + ++++||.|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A--D---~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA--D---VIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC--c---EEEEecccCCC
Confidence 45667788775544333333322 3578999999886543222 222 23333222 2 78899999998
Q ss_pred ccccHHHHHHHHHcC--CcEEEEcc
Q 030693 132 RQVKAKQVTFHRKKN--LQYYEISA 154 (173)
Q Consensus 132 ~~~~~~~~~~~~~~~--~~~~~~S~ 154 (173)
...........+..+ ..++.++.
T Consensus 160 ~~~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 160 AEELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEccc
Confidence 764344444555443 55666665
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.5e-05 Score=49.37 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+|.|++||||||+++.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999664
|
... |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=44.66 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=58.9
Q ss_pred EEEEc-CCCCCHHHHHHHHhhCCcccc-cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 16 LVIVG-DGGTGKTTFVKRHLTGEFEKK-YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 16 i~v~G-~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
|+++| ..|+||||+...+.. .+... ...+.-.+.+.. ....+.++|+|+... ......+..+|.++++.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~-~~~~~~~~~~~l~d~d~~------~~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv 72 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAV-ALAKEAGRRVLLVDLDLQ------FGDDYVVVDLGRSLD--EVSLAALDQADRVFLVT 72 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHH-HHHhcCCCcEEEEECCCC------CCCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEe
Confidence 44555 578999998776432 22111 122222222111 111789999998643 33445678899999998
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-C-CCCEEEEEeC
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-E-NIPIVLCGNK 126 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~-~~p~ivv~nK 126 (173)
+.+ ..+...+..+++.+.+.. + ..++.+|+|+
T Consensus 73 ~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 73 QQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred cCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 865 445566666666665542 2 3467777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00024 Score=57.94 Aligned_cols=94 Identities=7% Similarity=-0.061 Sum_probs=49.0
Q ss_pred EEEEEEEeCCCcccccC-c---chhh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGG-L---RDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|-..... + .... ....+-.++|+|++... +.+......+.....--+--+|+||.|....-.
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G 340 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DTLNEVVHAYRHGAGEDVDGCIITKLDEATHLG 340 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HHHHHHHHHHhhcccCCCCEEEEeccCCCCCcc
Confidence 45789999999432111 1 1111 12345678899987432 222222333322110012356689999876432
Q ss_pred cHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 135 KAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
. ..++....+.++..++ +|++|
T Consensus 341 ~--iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 341 P--ALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred H--HHHHHHHHCCCeEEEe--cCCCC
Confidence 2 3456666677766653 44555
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=54.69 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=68.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC-cccc---------------------cccceeEEEEEEE-E-----EecCcEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGE-FEKK---------------------YEPTIGVEVHPLD-F-----FTNCGKIRF 64 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~---------------------~~~~~~~~~~~~~-~-----~~~~~~~~~ 64 (173)
..-++++|++|+||||++..|.... .... +....+....... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999998876421 0000 0001111111000 0 001135678
Q ss_pred EEEeCCCcccccC----cchhhcc-----CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030693 65 YCWDTAGQEKFGG----LRDGYYI-----HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 65 ~~~D~~G~~~~~~----~~~~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
.++||+|...... ....++. ...-.++|+|++... +.+......+... + +--+++||.|-...-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~--~-~~glIlTKLDEt~~~G~ 377 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL--N-YRRILLTKLDEADFLGS 377 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC--C-CCEEEEEcccCCCCccH
Confidence 9999999642211 1222222 134678899988653 2222222222211 1 23466899998654332
Q ss_pred HHHHHHHHHcCCcEEEEc
Q 030693 136 AKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S 153 (173)
..+++...+.++..++
T Consensus 378 --il~i~~~~~lPI~ylt 393 (432)
T PRK12724 378 --FLELADTYSKSFTYLS 393 (432)
T ss_pred --HHHHHHHHCCCEEEEe
Confidence 3455666676665553
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.3e-05 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.||+|+|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999996654
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.4e-05 Score=51.80 Aligned_cols=21 Identities=33% Similarity=0.801 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
||+|+|++|||||||...+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998654
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00024 Score=43.62 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=50.0
Q ss_pred EEEEc-CCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 16 LVIVG-DGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 16 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
|++.| ..|+||||+...+...- .....+..-.+ .+ ..+.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~~d-------~d-~~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLLID-------LD-PQYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEEEe-------CC-CCCCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 56777 47899999987644221 11111222111 11 227899999998643 233467788999999998
Q ss_pred CCChhhhhcHHHHHH
Q 030693 95 VTARLTYKNVPTWHR 109 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~ 109 (173)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555544
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.3e-05 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=21.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.+..-|+|+|++|+|||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34566889999999999999997643
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00062 Score=53.63 Aligned_cols=83 Identities=8% Similarity=0.114 Sum_probs=46.0
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhc--CCC-CEEEEEeCCCCccccccH-------H-H--HHHHHHcCCcEEEEc
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI-PIVLCGNKVDVKNRQVKA-------K-Q--VTFHRKKNLQYYEIS 153 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~-p~ivv~nK~Dl~~~~~~~-------~-~--~~~~~~~~~~~~~~S 153 (173)
--+|+|=|.-+--..+. ..+...+.++. .+. |+|+|++-+|........ + . .++....++..+..+
T Consensus 133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FN 211 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDT-SRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFN 211 (519)
T ss_pred ceEEEeeccccccchhH-HHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEec
Confidence 45666667654221111 23333333322 355 999999977643211110 1 1 244555678888888
Q ss_pred cCCCCChHHHHHHHHHH
Q 030693 154 AKSNYNFEKPFLYLARK 170 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~ 170 (173)
+....-+...+..|+..
T Consensus 212 pIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 212 PIAPTFMKKALKRILKK 228 (519)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88877777777776653
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.3e-05 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.=|+++|++|||||||+++|+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 44899999999999999997654
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=4e-05 Score=51.67 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+|+|++|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998653
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0001 Score=57.24 Aligned_cols=91 Identities=9% Similarity=-0.057 Sum_probs=46.3
Q ss_pred EEEEEEEeCCCcccccC---cchhhccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGG---LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~---~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
...+.++||+|-..... .....+.. ..-.++|+|.+... ..+.+....+.. ...--+++||.|......
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~---~~~~g~IlTKlDet~~~G 408 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG---PGLAGCILTKLDEAASLG 408 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc---CCCCEEEEeCCCCcccch
Confidence 34678999999432211 11111211 12367888887432 222222222222 223456689999765332
Q ss_pred cHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 135 KAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.........+.++..++ +|+++
T Consensus 409 --~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 409 --GALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred --HHHHHHHHHCCCeEEEe--cCCCC
Confidence 23566666777766663 45555
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.63 E-value=4.9e-05 Score=49.41 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
|+++|++||||||+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999966
|
... |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.6e-05 Score=41.47 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
..++.|+.|+|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998653
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=2.1e-05 Score=58.80 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=52.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc--CcchhhccCCC
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG--GLRDGYYIHGQ 87 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~~~~~~~~~~~ 87 (173)
+.+++-|.++|.||+|||++||.|.. +-.+...|-.|.|-. +.+ -.-...+-++|+||.--.. +.....+ -
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~-KkVCkvAPIpGETKV-WQY--ItLmkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRK-KKVCKVAPIPGETKV-WQY--ITLMKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhh-cccccccCCCCcchH-HHH--HHHHhceeEecCCCccCCCCCchHHHHh---h
Confidence 56789999999999999999999554 444555666664321 211 1123457789999954222 2233333 3
Q ss_pred EEEEEEECCChh
Q 030693 88 CAIIMFDVTARL 99 (173)
Q Consensus 88 ~~i~v~d~~~~~ 99 (173)
+++=|-.+.+++
T Consensus 377 GvVRVenv~~pe 388 (572)
T KOG2423|consen 377 GVVRVENVKNPE 388 (572)
T ss_pred ceeeeeecCCHH
Confidence 556666777765
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=6e-05 Score=56.64 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=45.5
Q ss_pred EEEEEEEeCCCcccccCc----chhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGGL----RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|....... ...+.. ..+..++|.+++.. ..++...+..+.. --+--+++||.|....-.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~---l~i~glI~TKLDET~~~G 359 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE---IPIDGFIITKMDETTRIG 359 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc---CCCCEEEEEcccCCCCcc
Confidence 468999999996432211 111222 34566677766422 1223222222211 112356689999875432
Q ss_pred cHHHHHHHHHcCCcEEEEc
Q 030693 135 KAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (173)
...+.+...+.++..++
T Consensus 360 --~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 360 --DLYTVMQETNLPVLYMT 376 (407)
T ss_pred --HHHHHHHHHCCCEEEEe
Confidence 23566667777766554
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00091 Score=49.60 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=44.4
Q ss_pred EEEEEEeCCCcccccCcchhhcc--------CCCEEEEEEECCChhhhh-cHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYI--------HGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
....++++.|......+...++. ..+.++.|+|+.+..... .......++... + ++++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A--D---~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA--D---RILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC--C---EEEEeccccCCH
Confidence 45677888886544443333321 247899999997543221 111122233221 2 677899999864
Q ss_pred cccHHHHHHHHHc--CCcEEEE
Q 030693 133 QVKAKQVTFHRKK--NLQYYEI 152 (173)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~ 152 (173)
. .......+.. .++++.+
T Consensus 166 ~--~~~~~~l~~lnp~a~i~~~ 185 (318)
T PRK11537 166 A--EKLRERLARINARAPVYTV 185 (318)
T ss_pred H--HHHHHHHHHhCCCCEEEEe
Confidence 3 2333333333 3445543
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00073 Score=45.76 Aligned_cols=85 Identities=9% Similarity=0.083 Sum_probs=58.8
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 139 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 139 (173)
..+.+.++|+|+... ......+..+|.++++...+.. +...+..+++.+.+. +.|+.+|+||+|...+ ...+..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~~-~~~~~~ 164 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF--GIPVGVVINKYDLNDE-IAEEIE 164 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcc-hHHHHH
Confidence 467899999996542 2334567889999999998743 555666666666554 6788899999997543 233445
Q ss_pred HHHHHcCCcEE
Q 030693 140 TFHRKKNLQYY 150 (173)
Q Consensus 140 ~~~~~~~~~~~ 150 (173)
+++...+++++
T Consensus 165 ~~~~~~~~~vl 175 (179)
T cd03110 165 DYCEEEGIPIL 175 (179)
T ss_pred HHHHHcCCCeE
Confidence 66677777654
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.57 E-value=9.5e-05 Score=47.98 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999996643
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=5.2e-05 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999997644
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00088 Score=40.11 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=43.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc-chhhccCCCEEEEEEE
Q 030693 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFD 94 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~~i~v~d 94 (173)
+++.|..|+||||+...+...-.... ....-.+ .+.++|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~~~-------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVLLID-------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEC-------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999988553221111 1111111 7889999976532211 1456667899999998
Q ss_pred CCCh
Q 030693 95 VTAR 98 (173)
Q Consensus 95 ~~~~ 98 (173)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7754
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=44.41 Aligned_cols=84 Identities=6% Similarity=-0.100 Sum_probs=50.5
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHH
Q 030693 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH 142 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 142 (173)
.+.++|+|+.... .....+..+|.++++.+.+.. ++..+..+++.+... ......+++|+.+............+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~~~~~~~~~~~~ 139 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL-GIKVVGVIVNRVRPDMVEGGDMVEDIE 139 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc-CCceEEEEEeCCcccccchhhHHHHHH
Confidence 7899999975432 344557889999999987643 444455555555442 123467889999875433222223344
Q ss_pred HHcCCcEE
Q 030693 143 RKKNLQYY 150 (173)
Q Consensus 143 ~~~~~~~~ 150 (173)
...+.+++
T Consensus 140 ~~~~~~v~ 147 (179)
T cd02036 140 EILGVPLL 147 (179)
T ss_pred HHhCCCEE
Confidence 44555543
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0015 Score=47.21 Aligned_cols=92 Identities=8% Similarity=0.012 Sum_probs=51.8
Q ss_pred EEEEEEEeCCCcccccC----cchhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGG----LRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~----~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... ....++. ..+-.++|+|++... +++......+... .+--+++||.|......
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~~---~~~~~I~TKlDet~~~G 228 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI---HIDGIVFTKFDETASSG 228 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCCC---CCCEEEEEeecCCCCcc
Confidence 46899999999653221 1112222 346688999987432 2333334444332 22356689999877533
Q ss_pred cHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 135 KAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
...+++...+.++..++ +|+++.
T Consensus 229 --~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 229 --ELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred --HHHHHHHHHCcCEEEEe--CCCCCC
Confidence 23566666677766553 344444
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=41.65 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|++.|++|+||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999998653
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0005 Score=46.61 Aligned_cols=22 Identities=50% Similarity=0.443 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
=.++++|+.|+|||||++.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 3689999999999999998554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0003 Score=49.30 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=59.6
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh--hhhcHHHHHHHHhh-hcCCCCEEEEEeCCCCccccccHH
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAK 137 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~ 137 (173)
.+.|.+.|+.|... ......+..+|.+|+=.-.+..+ ..-..-+|+.+..+ ..+++|..|+.|+++-........
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~~~~ 160 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLTRAQR 160 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhhHHHH
Confidence 46899999988653 34555677899999955555322 22222234444433 346899999999997442111111
Q ss_pred H-HHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 138 Q-VTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 138 ~-~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
. .++.. +++++.+...+..-+.+++.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 1 22222 47777777666655555544
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0022 Score=48.81 Aligned_cols=92 Identities=8% Similarity=-0.060 Sum_probs=49.5
Q ss_pred cEEEEEEEeCCCcccccC----cchhhccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030693 60 GKIRFYCWDTAGQEKFGG----LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~----~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
..+.+.++||+|...... -...++.. ..-.++|.|++... ..+...+..+.. --+--+++||.|....
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~---~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP---FSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC---CCCCEEEEEeccCCCc
Confidence 356889999999643221 11122232 22578899998653 233333333221 1133567899997664
Q ss_pred cccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 133 QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
-.. ..+++...+.++..++ +|+++
T Consensus 328 ~G~--~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 328 VGN--LISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred chH--HHHHHHHHCCCEEEEe--CCCCC
Confidence 332 2455556666655552 44555
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0038 Score=46.83 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567799999999999998753
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00075 Score=43.46 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~ 37 (173)
.-.+++.|++|+|||++++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999966443
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00016 Score=49.68 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+-.+|+|+.||||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46678999999999999998654
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=7.2e-05 Score=52.20 Aligned_cols=19 Identities=37% Similarity=0.789 Sum_probs=16.1
Q ss_pred eEEEEEcCCCCCHHHHHHH
Q 030693 14 FKLVIVGDGGTGKTTFVKR 32 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~ 32 (173)
+--+|+|+|||||||.++.
T Consensus 3 fgqvVIGPPgSGKsTYc~g 21 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNG 21 (290)
T ss_pred cceEEEcCCCCCccchhhh
Confidence 4568999999999999865
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00015 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+|+|+|.+||||||+..+|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999664
|
|
| >PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A [] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.016 Score=38.79 Aligned_cols=136 Identities=7% Similarity=0.009 Sum_probs=90.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+...|+++|..+.++..|.++++..... . . +.+... ... -.|.. . ...=...|.++|
T Consensus 14 n~atiLLVg~e~~~~~~LA~a~l~~~~~------~--~---l~Vh~a-~sL-----PLp~e--~----~~lRprIDlIVF 70 (176)
T PF11111_consen 14 NTATILLVGTEEALLQQLAEAMLEEDKE------F--K---LKVHLA-KSL-----PLPSE--N----NNLRPRIDLIVF 70 (176)
T ss_pred ceeEEEEecccHHHHHHHHHHHHhhccc------e--e---EEEEEe-ccC-----CCccc--c----cCCCceeEEEEE
Confidence 4689999999999999999997742111 1 1 111110 011 11111 1 111246899999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc--ccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
++|.....|++..+.-+..+....---.+.++.+-....+ .....+..+++..+.++++.+.-...++...+-+.+.+
T Consensus 71 vinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~ 150 (176)
T PF11111_consen 71 VINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLR 150 (176)
T ss_pred EEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHH
Confidence 9999999999888877777654432334666666666544 34455677999999999999999988888777777666
Q ss_pred H
Q 030693 170 K 170 (173)
Q Consensus 170 ~ 170 (173)
.
T Consensus 151 ~ 151 (176)
T PF11111_consen 151 M 151 (176)
T ss_pred H
Confidence 4
|
CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival []. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00024 Score=48.16 Aligned_cols=21 Identities=48% Similarity=0.695 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+++|++|+|||||++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999665
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00018 Score=46.48 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5899999999999999985543
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00017 Score=48.95 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+++|++|+||||+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.001 Score=44.90 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=30.0
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
|++++|+|+.++.+... ..+.+.+.-...+.|+++|+||+|+.+...
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCCHHH
Confidence 78999999988643322 122222111113789999999999976443
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00015 Score=50.67 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
-++|+|++|||||||++- +++-
T Consensus 33 ~vaI~GpSGSGKSTLLni-ig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNL-LGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHH-Hhcc
Confidence 389999999999999997 4443
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00018 Score=45.75 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999986643
|
... |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00023 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+-|+|.|.+|||||||.++|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46788999999999999999654
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00025 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+...|+|.|++|||||||++.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998654
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00021 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
|
|
| >smart00072 GuKc Guanylate kinase homologues | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00019 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
-|+++|++||||+|+++.|....
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999976553
|
Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00026 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
++..-|+++|++|+|||||++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999998654
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0002 Score=49.55 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 030693 15 KLVIVGDGGTGKTTFVKRH 33 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l 33 (173)
.++++|++|||||||++.+
T Consensus 30 vv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999874
|
|
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00037 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+.|+++|+|||||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998653
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00028 Score=47.64 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~ 38 (173)
.++|+|++|+|||||+|-+.+-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 689999999999999998665433
|
|
| >PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 | Back alignment and domain information |
|---|
Probab=97.31 E-value=6.9e-05 Score=51.04 Aligned_cols=21 Identities=43% Similarity=0.808 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|+++|++|+||+||.++|+.
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999764
|
7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A .... |
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=51.64 Aligned_cols=84 Identities=8% Similarity=0.086 Sum_probs=48.7
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHH--HHHHHHcCCcEEEEccCCCCChHH
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
-.+|+|=|+-+-.-.+....+.+.++.+ .+..|+|++++-+-.......... ..+-...++..+..+.....-+..
T Consensus 195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK 274 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKK 274 (634)
T ss_pred ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHH
Confidence 3457777776543332333333333322 368899999998876542222211 123345567777777777777777
Q ss_pred HHHHHHHH
Q 030693 163 PFLYLARK 170 (173)
Q Consensus 163 ~~~~i~~~ 170 (173)
.+..|++.
T Consensus 275 ~L~ric~~ 282 (634)
T KOG1970|consen 275 FLKRICRI 282 (634)
T ss_pred HHHHHHHH
Confidence 77777664
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00025 Score=50.15 Aligned_cols=26 Identities=42% Similarity=0.709 Sum_probs=22.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
...++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999887643
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00026 Score=45.17 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999986543
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00024 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999986543
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00028 Score=45.12 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEF 38 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~ 38 (173)
-.++++|++|+||||++..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999665443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00025 Score=50.05 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|++|+|||||++.+.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999998543
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00028 Score=48.18 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|++|+|||||++.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999654
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00042 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
-+++++|.+|+|||||++.+.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47899999999999999997754
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00073 Score=50.19 Aligned_cols=93 Identities=22% Similarity=0.174 Sum_probs=63.7
Q ss_pred eCCCcc-cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHHHc
Q 030693 68 DTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK 145 (173)
Q Consensus 68 D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~ 145 (173)
+.||+. ++.......+..+|+++-|+|+.++.+... ..+.+...+.|.++|+||+|+.+......-. .+....
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~ 90 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEE 90 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 346653 455566667889999999999999875333 2343444466779999999998866544333 344444
Q ss_pred CCcEEEEccCCCCChHHHHH
Q 030693 146 NLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 146 ~~~~~~~S~~~~~~i~~~~~ 165 (173)
+...+.+++..+.+...+..
T Consensus 91 ~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 91 GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred CCccEEEEeecccCccchHH
Confidence 67778888888887666653
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0003 Score=47.34 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+++|++|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998553
|
|
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00029 Score=48.10 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+++|+|||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00034 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.|+|+|+.|+|||||+..++..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999997643
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00028 Score=48.04 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
.|+++|++||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999866
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00035 Score=47.60 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+|+++|+|||||||+...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998643
|
|
| >PLN02924 thymidylate kinase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00063 Score=47.76 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
|+|+.....+....=|++-|..||||||+++.|.
T Consensus 4 ~~~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~ 37 (220)
T PLN02924 4 MGMETESSVESRGALIVLEGLDRSGKSTQCAKLV 37 (220)
T ss_pred cccCCCCCcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 6777777666666779999999999999999854
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0014 Score=42.14 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999997754
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00038 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+++|+|||||||+...+..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999998654
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0003 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
....+|+|.|.||+||||+.+++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 345799999999999999999965
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00039 Score=46.96 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998643
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00038 Score=42.98 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999865
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00034 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.571 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+|+|++||||||+...|..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00037 Score=48.02 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|++.|++|||||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998654
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0055 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.-.+++.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999996543
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00044 Score=44.80 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998653
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00039 Score=46.38 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
.+|+|.|.||+||||+.++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 379999999999999999966
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00056 Score=46.17 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
......|+|.|++||||||+.+.+...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678899999999999999997643
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00044 Score=46.83 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
-.++++|+.|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999864
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00039 Score=47.23 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998654
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00092 Score=49.19 Aligned_cols=143 Identities=16% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC----Ccc----------c-------ccccceeEEEEEEEE-------------E
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG----EFE----------K-------KYEPTIGVEVHPLDF-------------F 56 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~----~~~----------~-------~~~~~~~~~~~~~~~-------------~ 56 (173)
.+..-|+++|-.|+||||-+-.|... ... . .+....|...-.... .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 44688999999999999988775431 100 0 000011211111100 0
Q ss_pred ecCcEEEEEEEeCCCcccccC-cch------hhccC-----CCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEE
Q 030693 57 TNCGKIRFYCWDTAGQEKFGG-LRD------GYYIH-----GQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLC 123 (173)
Q Consensus 57 ~~~~~~~~~~~D~~G~~~~~~-~~~------~~~~~-----~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv 123 (173)
....++.+.++||+|--..+. +.. ..+.. .+=++++.|++-.. ++..++.+.+.+ ++- -++
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-----~l~-GiI 290 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-----GLD-GII 290 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-----CCc-eEE
Confidence 012467899999999432221 111 11222 34488888999764 333333222222 221 466
Q ss_pred EeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+||+|-..+-.. ....+...+.|+..+- .|++++++
T Consensus 291 lTKlDgtAKGG~--il~I~~~l~~PI~fiG--vGE~~~DL 326 (340)
T COG0552 291 LTKLDGTAKGGI--ILSIAYELGIPIKFIG--VGEGYDDL 326 (340)
T ss_pred EEecccCCCcce--eeeHHHHhCCCEEEEe--CCCChhhc
Confidence 799995443221 2456677788876663 34444443
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhhCC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~ 37 (173)
|+++|++|+||||+++.++...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999866543
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00091 Score=52.20 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
=||+++|.+|+||||+++.++.
T Consensus 379 ekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998764
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00062 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
...-++++|++|+||+||+++|...
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhh
Confidence 3446888999999999999997653
|
|
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00039 Score=48.41 Aligned_cols=21 Identities=43% Similarity=0.639 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
||+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 173 | ||||
| 3m1i_A | 219 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 3e-81 | ||
| 3icq_B | 171 | Karyopherin Nuclear State Length = 171 | 2e-80 | ||
| 2x19_A | 172 | Crystal Structure Of Importin13 - Rangtp Complex Le | 3e-80 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 2e-79 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 1e-78 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 1e-78 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 2e-78 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 2e-78 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 3e-78 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 4e-78 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 6e-78 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 1e-77 | ||
| 3ran_A | 216 | Canine Gdp-Ran Q69l Mutant Length = 216 | 1e-77 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 1e-77 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 1e-77 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 5e-77 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 9e-77 | ||
| 4djt_A | 218 | Crystal Structure Of A Nuclear Gtp-Binding Protein | 9e-39 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 4e-27 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 5e-27 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 9e-27 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 4e-26 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 1e-23 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 2e-23 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 2e-23 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 2e-23 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 1e-22 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 1e-22 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 2e-22 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 2e-22 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 3e-22 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 3e-22 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 3e-22 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 3e-22 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 4e-22 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 4e-22 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 5e-22 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 5e-22 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 7e-22 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 1e-21 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 1e-21 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 1e-21 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 1e-21 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 2e-21 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 2e-21 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 2e-21 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 2e-21 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 4e-21 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 5e-21 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 7e-21 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 9e-21 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 1e-20 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 1e-20 | ||
| 2gzd_A | 173 | Crystal Structure Of Rab11 In Complex With Rab11-Fi | 2e-20 | ||
| 2d7c_A | 167 | Crystal Structure Of Human Rab11 In Complex With Fi | 2e-20 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 2e-20 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 2e-20 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 2e-20 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 3e-20 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 4e-20 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 4e-20 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 7e-20 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 7e-20 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 7e-20 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 9e-20 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 9e-20 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 9e-20 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 1e-19 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 1e-19 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 1e-19 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 1e-19 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 1e-19 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 1e-19 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 2e-19 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 2e-19 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 3e-19 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 4e-19 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 4e-19 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 4e-19 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 4e-19 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 4e-19 | ||
| 1c1y_A | 167 | Crystal Structure Of Rap.Gmppnp In Complex With The | 5e-19 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 6e-19 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 6e-19 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 8e-19 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 8e-19 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 9e-19 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 9e-19 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 2e-18 | ||
| 1gua_A | 167 | Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 | 2e-18 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 2e-18 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 2e-18 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 2e-18 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 2e-18 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 3e-18 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 3e-18 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 3e-18 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 3e-18 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 3e-18 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 3e-18 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 3e-18 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 3e-18 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 4e-18 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 4e-18 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 4e-18 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 5e-18 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 5e-18 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 6e-18 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 6e-18 | ||
| 3brw_D | 167 | Structure Of The Rap-Rapgap Complex Length = 167 | 6e-18 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 7e-18 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 9e-18 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 1e-17 | ||
| 1zc3_A | 175 | Crystal Structure Of The Ral-Binding Domain Of Exo8 | 2e-17 | ||
| 3a58_B | 188 | Crystal Structure Of Sec3p - Rho1p Complex From Sac | 2e-17 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 2e-17 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 2e-17 | ||
| 4dxa_A | 169 | Co-Crystal Structure Of Rap1 In Complex With Krit1 | 7e-17 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 8e-17 | ||
| 2j1l_A | 214 | Crystal Structure Of Human Rho-Related Gtp-Binding | 1e-16 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 2e-16 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 2e-16 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 3e-16 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 3e-16 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 3e-16 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 5e-16 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 8e-16 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 9e-16 | ||
| 1agp_A | 166 | Three-Dimensional Structures And Properties Of A Tr | 1e-15 | ||
| 1jah_A | 166 | H-Ras P21 Protein Mutant G12p, Complexed With Guano | 1e-15 | ||
| 1clu_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 1e-15 | ||
| 421p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 1e-15 | ||
| 3msx_A | 180 | Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With | 3e-15 | ||
| 1tx4_B | 177 | RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | 3e-15 | ||
| 1xcg_B | 178 | Crystal Structure Of Human Rhoa In Complex With DhP | 3e-15 | ||
| 4epr_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 3e-15 | ||
| 1cc0_A | 190 | Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le | 4e-15 | ||
| 4dso_A | 189 | Small-Molecule Ligands Bind To A Distinct Pocket In | 4e-15 | ||
| 1ow3_B | 193 | Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With | 4e-15 | ||
| 3lw8_A | 185 | Shigella Ipgb2 In Complex With Human Rhoa, Gdp And | 5e-15 | ||
| 3kz1_E | 182 | Crystal Structure Of The Complex Of Pdz-Rhogef DhPH | 6e-15 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 6e-15 | ||
| 1s1c_A | 183 | Crystal Structure Of The Complex Between The Human | 6e-15 | ||
| 3tvd_A | 193 | Crystal Structure Of Mouse Rhoa-Gtp Complex Length | 7e-15 | ||
| 1lb1_B | 192 | Crystal Structure Of The Dbl And Pleckstrin Homolog | 8e-15 | ||
| 1x86_B | 196 | Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A | 8e-15 | ||
| 4f38_A | 195 | Crystal Structure Of Geranylgeranylated Rhoa In Com | 8e-15 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 8e-15 | ||
| 1z2c_A | 193 | Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With | 2e-14 | ||
| 3clv_A | 208 | Crystal Structure Of Rab5a From Plasmodium Falcipar | 2e-14 | ||
| 1kmq_A | 184 | Crystal Structure Of A Constitutively Activated Rho | 2e-14 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 2e-14 | ||
| 2gcn_A | 201 | Crystal Structure Of The Human Rhoc-Gdp Complex Len | 3e-14 | ||
| 1cxz_A | 182 | Crystal Structure Of Human Rhoa Complexed With The | 5e-14 | ||
| 1dpf_A | 180 | Crystal Structure Of A Mg-Free Form Of Rhoa Complex | 6e-14 | ||
| 2fv8_A | 207 | The Crystal Structure Of Rhob In The Gdp-Bound Stat | 6e-14 | ||
| 2h7v_A | 188 | Co-crystal Structure Of Ypka-rac1 Length = 188 | 8e-14 | ||
| 1mh1_A | 186 | Small G-Protein Length = 186 | 8e-14 | ||
| 1g4u_R | 184 | Crystal Structure Of The Salmonella Tyrosine Phosph | 8e-14 | ||
| 1hh4_A | 192 | Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ | 9e-14 | ||
| 3sbd_A | 187 | Crystal Structure Of Rac1 P29s Mutant Length = 187 | 2e-13 | ||
| 1foe_B | 177 | Crystal Structure Of Rac1 In Complex With The Guani | 3e-13 | ||
| 2fju_A | 178 | Activated Rac1 Bound To Its Effector Phospholipase | 3e-13 | ||
| 1he1_C | 176 | Crystal Structure Of The Complex Between The Gap Do | 3e-13 | ||
| 3sua_A | 184 | Crystal Structure Of The Intracellular Domain Of Pl | 3e-13 | ||
| 2yin_C | 196 | Structure Of The Complex Between Dock2 And Rac1. Le | 3e-13 | ||
| 3th5_A | 204 | Crystal Structure Of Wild-Type Rac1 Length = 204 | 3e-13 | ||
| 2vrw_A | 184 | Critical Structural Role For The Ph And C1 Domains | 3e-13 | ||
| 1i4d_D | 192 | Crystal Structure Analysis Of Rac1-Gdp Complexed Wi | 3e-13 | ||
| 2gco_A | 201 | Crystal Structure Of The Human Rhoc-gppnhp Complex | 4e-13 | ||
| 1ds6_A | 192 | Crystal Structure Of A Rac-Rhogdi Complex Length = | 4e-13 | ||
| 3b13_B | 184 | Crystal Structure Of The Dhr-2 Domain Of Dock2 In C | 1e-12 | ||
| 4gzm_A | 204 | Crystal Structure Of Rac1 F28l Mutant Length = 204 | 1e-12 | ||
| 3bwd_D | 182 | Crystal Structure Of The Plant Rho Protein Rop5 Len | 1e-12 | ||
| 4gzl_A | 204 | Crystal Structure Of Rac1 Q61l Mutant Length = 204 | 2e-12 | ||
| 1e96_A | 192 | Structure Of The RacP67PHOX COMPLEX Length = 192 | 2e-12 | ||
| 3ryt_C | 180 | The Plexin A1 Intracellular Region In Complex With | 2e-12 | ||
| 2j0v_A | 212 | The Crystal Structure Of Arabidopsis Thaliana Rac7- | 2e-12 | ||
| 2ic5_A | 180 | Crystal Structure Of Human Rac3 Grown In The Presen | 2e-12 | ||
| 2g0n_A | 179 | The Crystal Structure Of The Human Rac3 In Complex | 2e-12 | ||
| 1i4t_D | 192 | Crystal Structure Analysis Of Rac1-Gmppnp In Comple | 2e-12 | ||
| 2c2h_A | 192 | Crystal Structure Of The Human Rac3 In Complex With | 3e-12 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 3e-12 | ||
| 2fn4_A | 181 | The Crystal Structure Of Human Ras-Related Protein, | 4e-12 | ||
| 2w2v_A | 184 | Rac2 (G12v) In Complex With Gtpgs Length = 184 | 6e-12 | ||
| 2nty_C | 180 | Rop4-Gdp-Prone8 Length = 180 | 6e-12 | ||
| 2w2t_A | 185 | Rac2 (G12v) In Complex With Gdp Length = 185 | 6e-12 | ||
| 3ddc_A | 166 | Crystal Structure Of Nore1a In Complex With Ras Len | 7e-12 | ||
| 2hxs_A | 178 | Crystal Structure Of Rab28a Gtpase In The Inactive | 7e-12 | ||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 8e-12 | ||
| 3kko_A | 183 | Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX | 8e-12 | ||
| 221p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 1e-11 | ||
| 1lfd_B | 167 | Crystal Structure Of The Active Ras Protein Complex | 1e-11 | ||
| 2wbl_C | 180 | Three-Dimensional Structure Of A Binary Rop-Prone C | 1e-11 | ||
| 3kkm_A | 172 | Crystal Structure Of H-Ras T35s In Complex With Gpp | 1e-11 | ||
| 3pir_A | 183 | Crystal Structure Of M-Rasd41e In Complex With Gppn | 2e-11 | ||
| 3kkp_A | 183 | Crystal Structure Of M-Ras P40d In Complex With Gpp | 2e-11 | ||
| 4efm_A | 171 | Crystal Structure Of H-Ras G12v In Complex With Gpp | 2e-11 | ||
| 4efl_A | 171 | Crystal Structure Of H-Ras Wt In Complex With Gppnh | 2e-11 | ||
| 2cld_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 2e-11 | ||
| 2wkr_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 2e-11 | ||
| 1wq1_R | 166 | Ras-Rasgap Complex Length = 166 | 2e-11 | ||
| 1rvd_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 2e-11 | ||
| 2wkq_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 2e-11 | ||
| 2wkp_A | 332 | Structure Of A Photoactivatable Rac1 Containing Lov | 3e-11 | ||
| 2c5l_A | 173 | Structure Of Plc Epsilon Ras Association Domain Wit | 3e-11 | ||
| 3v4f_A | 166 | H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | 3e-11 | ||
| 1x1r_A | 178 | Crystal Structure Of M-Ras In Complex With Gdp Leng | 3e-11 | ||
| 4q21_A | 189 | Molecular Switch For Signal Transduction: Structura | 3e-11 | ||
| 6q21_A | 171 | Molecular Switch For Signal Transduction: Structura | 3e-11 | ||
| 2q21_A | 171 | Crystal Structures At 2.2 Angstroms Resolution Of T | 3e-11 | ||
| 2quz_A | 166 | Crystal Structure Of The Activating H-Rask117r Muta | 4e-11 | ||
| 3i3s_R | 166 | Crystal Structure Of H-Ras With Thr50 Replaced By I | 4e-11 | ||
| 3lo5_A | 166 | Crystal Structure Of The Dominant Negative S17n Mut | 4e-11 | ||
| 2x1v_A | 166 | Crystal Structure Of The Activating H-Ras I163f Mut | 5e-11 | ||
| 1iaq_A | 166 | C-H-Ras P21 Protein Mutant With Thr 35 Replaced By | 6e-11 | ||
| 2cl0_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 7e-11 | ||
| 3k9n_A | 166 | Allosteric Modulation Of H-Ras Gtpase Length = 166 | 7e-11 | ||
| 3ref_B | 194 | Crystal Structure Of Ehrho1 Bound To Gdp And Magnes | 7e-11 | ||
| 1nvv_Q | 166 | Structural Evidence For Feedback Activation By Rasg | 7e-11 | ||
| 1xcm_A | 167 | Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu | 7e-11 | ||
| 1xj0_A | 166 | Crystal Structure Of The Gdp-Bound Form Of The Rasg | 8e-11 | ||
| 4epx_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 8e-11 | ||
| 4ept_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 8e-11 | ||
| 2rgb_A | 166 | Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | 8e-11 | ||
| 1lf0_A | 166 | Crystal Structure Of Rasa59g In The Gtp-Bound Form | 9e-11 | ||
| 521p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 9e-11 | ||
| 4dvg_A | 188 | Crystal Structure Of E. Histolytica Formin1 Bound T | 1e-10 | ||
| 621p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 1e-10 | ||
| 1zw6_A | 166 | Crystal Structure Of The Gtp-Bound Form Of Rasq61g | 1e-10 | ||
| 4efn_A | 171 | Crystal Structure Of H-Ras Q61l In Complex With Gpp | 2e-10 | ||
| 721p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 2e-10 | ||
| 2rgc_A | 166 | Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | 2e-10 | ||
| 1zvq_A | 166 | Structure Of The Q61g Mutant Of Ras In The Gdp-Boun | 2e-10 | ||
| 2rga_A | 166 | Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | 3e-10 | ||
| 4did_A | 193 | Crystal Structure Of Salmonella Effector N-Terminal | 3e-10 | ||
| 1kz7_B | 188 | Crystal Structure Of The DhPH FRAGMENT OF MURINE DB | 3e-10 | ||
| 3rap_R | 167 | The Small G Protein Rap2 In A Non Catalytic Complex | 3e-10 | ||
| 3con_A | 190 | Crystal Structure Of The Human Nras Gtpase Bound Wi | 3e-10 | ||
| 1grn_A | 191 | Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. | 3e-10 | ||
| 1doa_A | 191 | Structure Of The Rho Family Gtp-Binding Protein Cdc | 3e-10 | ||
| 1am4_D | 177 | Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S | 3e-10 | ||
| 3gcg_A | 182 | Crystal Structure Of Map And Cdc42 Complex Length = | 3e-10 | ||
| 1aje_A | 194 | Cdc42 From Human, Nmr, 20 Structures Length = 194 | 3e-10 | ||
| 1cee_A | 179 | Solution Structure Of Cdc42 In Complex With The Gtp | 3e-10 | ||
| 2odb_A | 192 | The Crystal Structure Of Human Cdc42 In Complex Wit | 4e-10 | ||
| 1gzs_A | 180 | Crystal Structure Of The Complex Between The Gef Do | 4e-10 | ||
| 3eg5_A | 178 | Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W | 4e-10 | ||
| 2dfk_B | 194 | Crystal Structure Of The Cdc42-Collybistin Ii Compl | 4e-10 | ||
| 1ees_A | 178 | Solution Structure Of Cdc42hs Complexed With A Pept | 4e-10 | ||
| 2wm9_B | 190 | Structure Of The Complex Between Dock9 And Cdc42. L | 4e-10 | ||
| 2qrz_A | 189 | Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is | 4e-10 | ||
| 1an0_A | 190 | Cdc42hs-Gdp Complex Length = 190 | 4e-10 | ||
| 3gft_A | 187 | Human K-Ras In Complex With A Gtp Analogue Length = | 5e-10 | ||
| 1ryf_A | 203 | Alternative Splicing Of Rac1 Generates Rac1b, A Sel | 5e-10 | ||
| 2v55_B | 200 | Mechanism Of Multi-site Phosphorylation From A Rock | 6e-10 | ||
| 1gwn_A | 205 | The Crystal Structure Of The Core Domain Of RhoeRND | 7e-10 | ||
| 1m7b_A | 184 | Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI | 7e-10 | ||
| 3qbv_A | 178 | Structure Of Designed Orthogonal Interaction Betwee | 1e-09 | ||
| 2kb0_A | 178 | Cdc42(T35a) Length = 178 | 1e-09 | ||
| 3vhl_B | 195 | Crystal Structure Of The Dhr-2 Domain Of Dock8 In C | 1e-09 | ||
| 2ase_A | 178 | Nmr Structure Of The F28l Mutant Of Cdc42hs Length | 1e-09 | ||
| 2q3h_A | 201 | The Crystal Structure Of Rhoua In The Gdp-bound Sta | 1e-09 | ||
| 1cf4_A | 184 | Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | 2e-09 | ||
| 2atx_A | 194 | Crystal Structure Of The Tc10 Gppnhp Complex Length | 3e-09 | ||
| 1nf3_A | 195 | Structure Of Cdc42 In A Complex With The Gtpase-Bin | 3e-09 | ||
| 1a4r_B | 191 | G12v Mutant Of Human Placental Cdc42 Gtpase In The | 4e-09 | ||
| 3cbq_A | 195 | Crystal Structure Of The Human Rem2 Gtpase With Bou | 3e-08 | ||
| 2gf0_A | 199 | The Crystal Structure Of The Human Diras1 Gtpase In | 6e-08 | ||
| 2atv_A | 196 | The Crystal Structure Of Human Rerg In The Gdp Boun | 6e-08 | ||
| 1xtq_A | 177 | Structure Of Small Gtpase Human Rheb In Complex Wit | 1e-07 | ||
| 3t5g_A | 181 | Structure Of Fully Modified Farnesylated Rheb In Co | 1e-07 | ||
| 2l0x_A | 169 | Solution Structure Of The 21 Kda Gtpase Rheb Bound | 1e-07 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 1e-07 | ||
| 2yc2_C | 208 | Intraflagellar Transport Complex 25-27 From Chlamyd | 7e-07 | ||
| 3q3j_B | 214 | Crystal Structure Of Plexin A2 Rbd In Complex With | 7e-07 | ||
| 2rex_B | 197 | Crystal Structure Of The Effector Domain Of Plxnb1 | 7e-07 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 7e-07 | ||
| 2cls_A | 198 | The Crystal Structure Of The Human Rnd1 Gtpase In T | 7e-07 | ||
| 3sea_A | 167 | Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo | 1e-06 | ||
| 2cjw_B | 192 | Crystal Structure Of The Small Gtpase Gem (Gemdndca | 1e-06 | ||
| 2cjw_A | 192 | Crystal Structure Of The Small Gtpase Gem (Gemdndca | 1e-06 | ||
| 3q85_A | 169 | Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp | 1e-06 | ||
| 4aii_A | 180 | Crystal Structure Of The Rat Rem2 Gtpase - G Domain | 2e-06 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 5e-06 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 6e-06 | ||
| 2g3y_A | 211 | Crystal Structure Of The Human Small Gtpase Gem Len | 1e-05 | ||
| 2ht6_A | 174 | Crystal Structure Of Human Gem G-Domain Bound To Gd | 1e-05 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 5e-05 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 5e-05 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 6e-05 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-04 | ||
| 3ihw_A | 184 | Crystal Structure Of The Ras-Like Domain Of Centg3 | 1e-04 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-04 | ||
| 2nzj_A | 175 | The Crystal Structure Of Rem1 In Complex With Gdp L | 2e-04 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 2e-04 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 3e-04 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 3e-04 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 3e-04 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 3e-04 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 4e-04 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 4e-04 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 4e-04 | ||
| 2dpx_A | 174 | Crystal Structure Of Human Rad Gtpase Length = 174 | 5e-04 | ||
| 2gjs_A | 176 | The Crystal Structure Of Human Rrad In Complex With | 5e-04 | ||
| 3dpu_A | 535 | Roccor Domain Tandem Of Rab Family Protein (Roco) L | 5e-04 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 5e-04 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 6e-04 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 7e-04 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 7e-04 |
| >pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219 | Back alignment and structure |
|
| >pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171 | Back alignment and structure |
|
| >pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173 | Back alignment and structure |
|
| >pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175 | Back alignment and structure |
|
| >pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166 | Back alignment and structure |
|
| >pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166 | Back alignment and structure |
|
| >pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180 | Back alignment and structure |
|
| >pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | Back alignment and structure |
|
| >pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178 | Back alignment and structure |
|
| >pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190 | Back alignment and structure |
|
| >pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189 | Back alignment and structure |
|
| >pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193 | Back alignment and structure |
|
| >pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185 | Back alignment and structure |
|
| >pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183 | Back alignment and structure |
|
| >pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193 | Back alignment and structure |
|
| >pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192 | Back alignment and structure |
|
| >pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196 | Back alignment and structure |
|
| >pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193 | Back alignment and structure |
|
| >pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208 | Back alignment and structure |
|
| >pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201 | Back alignment and structure |
|
| >pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182 | Back alignment and structure |
|
| >pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180 | Back alignment and structure |
|
| >pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207 | Back alignment and structure |
|
| >pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188 | Back alignment and structure |
|
| >pdb|1MH1|A Chain A, Small G-Protein Length = 186 | Back alignment and structure |
|
| >pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192 | Back alignment and structure |
|
| >pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187 | Back alignment and structure |
|
| >pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177 | Back alignment and structure |
|
| >pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178 | Back alignment and structure |
|
| >pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176 | Back alignment and structure |
|
| >pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196 | Back alignment and structure |
|
| >pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204 | Back alignment and structure |
|
| >pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184 | Back alignment and structure |
|
| >pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192 | Back alignment and structure |
|
| >pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201 | Back alignment and structure |
|
| >pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192 | Back alignment and structure |
|
| >pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184 | Back alignment and structure |
|
| >pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182 | Back alignment and structure |
|
| >pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192 | Back alignment and structure |
|
| >pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180 | Back alignment and structure |
|
| >pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212 | Back alignment and structure |
|
| >pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180 | Back alignment and structure |
|
| >pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179 | Back alignment and structure |
|
| >pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192 | Back alignment and structure |
|
| >pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181 | Back alignment and structure |
|
| >pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184 | Back alignment and structure |
|
| >pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180 | Back alignment and structure |
|
| >pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185 | Back alignment and structure |
|
| >pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166 | Back alignment and structure |
|
| >pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178 | Back alignment and structure |
|
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183 | Back alignment and structure |
|
| >pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167 | Back alignment and structure |
|
| >pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180 | Back alignment and structure |
|
| >pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172 | Back alignment and structure |
|
| >pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183 | Back alignment and structure |
|
| >pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183 | Back alignment and structure |
|
| >pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332 | Back alignment and structure |
|
| >pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166 | Back alignment and structure |
|
| >pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332 | Back alignment and structure |
|
| >pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332 | Back alignment and structure |
|
| >pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173 | Back alignment and structure |
|
| >pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | Back alignment and structure |
|
| >pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178 | Back alignment and structure |
|
| >pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189 | Back alignment and structure |
|
| >pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171 | Back alignment and structure |
|
| >pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171 | Back alignment and structure |
|
| >pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166 | Back alignment and structure |
|
| >pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166 | Back alignment and structure |
|
| >pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166 | Back alignment and structure |
|
| >pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194 | Back alignment and structure |
|
| >pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166 | Back alignment and structure |
|
| >pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167 | Back alignment and structure |
|
| >pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166 | Back alignment and structure |
|
| >pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188 | Back alignment and structure |
|
| >pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166 | Back alignment and structure |
|
| >pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193 | Back alignment and structure |
|
| >pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188 | Back alignment and structure |
|
| >pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167 | Back alignment and structure |
|
| >pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190 | Back alignment and structure |
|
| >pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191 | Back alignment and structure |
|
| >pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191 | Back alignment and structure |
|
| >pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177 | Back alignment and structure |
|
| >pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182 | Back alignment and structure |
|
| >pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194 | Back alignment and structure |
|
| >pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179 | Back alignment and structure |
|
| >pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192 | Back alignment and structure |
|
| >pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180 | Back alignment and structure |
|
| >pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178 | Back alignment and structure |
|
| >pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194 | Back alignment and structure |
|
| >pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178 | Back alignment and structure |
|
| >pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190 | Back alignment and structure |
|
| >pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189 | Back alignment and structure |
|
| >pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190 | Back alignment and structure |
|
| >pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187 | Back alignment and structure |
|
| >pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203 | Back alignment and structure |
|
| >pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200 | Back alignment and structure |
|
| >pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205 | Back alignment and structure |
|
| >pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184 | Back alignment and structure |
|
| >pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178 | Back alignment and structure |
|
| >pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178 | Back alignment and structure |
|
| >pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195 | Back alignment and structure |
|
| >pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178 | Back alignment and structure |
|
| >pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201 | Back alignment and structure |
|
| >pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | Back alignment and structure |
|
| >pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194 | Back alignment and structure |
|
| >pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195 | Back alignment and structure |
|
| >pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191 | Back alignment and structure |
|
| >pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195 | Back alignment and structure |
|
| >pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199 | Back alignment and structure |
|
| >pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196 | Back alignment and structure |
|
| >pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177 | Back alignment and structure |
|
| >pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181 | Back alignment and structure |
|
| >pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208 | Back alignment and structure |
|
| >pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214 | Back alignment and structure |
|
| >pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198 | Back alignment and structure |
|
| >pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167 | Back alignment and structure |
|
| >pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192 | Back alignment and structure |
|
| >pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169 | Back alignment and structure |
|
| >pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211 | Back alignment and structure |
|
| >pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176 | Back alignment and structure |
|
| >pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 303 bits (778), Expect = e-107
Identities = 137/173 (79%), Positives = 149/173 (86%), Gaps = 1/173 (0%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MA +Q FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G
Sbjct: 4 MASAAQGEPQV-QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI 122
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 123 VLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 276 bits (707), Expect = 4e-96
Identities = 78/173 (45%), Positives = 111/173 (64%), Gaps = 5/173 (2%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IR 63
S + + ++K+ ++GDGG GKTT++ R L G FEK Y T+G HP+ F + G I+
Sbjct: 4 SMERREL-TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVL 122
F WDTAGQEK L+D YYI AI+ FDVT+R+T +N+ W ++ V PIV+
Sbjct: 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
Query: 123 CGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
C NK+D+KNRQ +K++ + KN +Y+EISAK+ +NF PFL+LAR G
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 2e-46
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 17/170 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
K++I+GD G GKT+ + +++ +F +Y+ TIG DF T + + WD
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVMVDDRLVTMQIWD 63
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLC 123
TAGQE+F L +Y C +++FDVTA T+K + +W + R EN P V+
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 124 GNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK+D++NRQV K+ + K N+ Y+E SAK N E+ F +AR
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 144 bits (367), Expect = 6e-45
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 13/169 (7%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
+ + K+V+VG+G GK++ ++R+ G F K Y+ TIGV DF N +R
Sbjct: 3 EV-AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV-----DFLERQIQVNDEDVRL 56
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
WDTAGQE+F + YY Q +++F T R +++ + +W + +IP L
Sbjct: 57 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ 116
Query: 125 NKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
NK+D+ + +K ++ ++ L++Y S K + N + F YLA K
Sbjct: 117 NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 144 bits (367), Expect = 6e-45
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 17/170 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
FK++++GDGG GK++ + R++T +F+ + TIGV +F + + WD
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV-----EFLNKDLEVDGHFVTMQIWD 62
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLC 123
TAGQE+F LR +Y C ++ F V +++N+ W ++ + E+ P V+
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 124 GNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK+D+ RQV ++ + Y+E SAK N F R++
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 4e-44
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
+KLV+VG GG GK+ + + F + +PTI D + +
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE------DSYRKQVVIDGETCLLDI 55
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 125 NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
NK D+ R V+++Q R + Y E SAK+ E F L R+
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 5e-44
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
+KLV+VG GG GK+ + + F +Y+PTI D + +
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE------DSYRKQVVIDGETCLLDI 73
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
DTAGQE++ +RD Y G+ + +F + ++ ++ + + RV +++P+VL G
Sbjct: 74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133
Query: 125 NKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
NK D+ R V KQ + + + E SAK+ E F L R+
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 6e-44
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK-IRFYCW 67
K++I+GD G GKT+ + R++ ++ ++Y+ TIG DF T + K W
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA-----DFLTKEVTVDGDKVATMQVW 63
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVL 122
DTAGQE+F L +Y C ++++DVT +++N+ +W + E P V+
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123
Query: 123 CGNKVDVK--NRQVKAKQV-TFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
GNK+D + + V K + ++ + SAK+ N + F +AR
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 1e-43
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCW 67
K+V++GDG +GKT+ F K+Y+ TIG+ DFF + W
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL-----DFFLRRITLPGNLNVTLQIW 61
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLC 123
D GQ G + D Y Q ++++D+T +++N+ W+ + +V E + L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK+D+++ R +K ++ F ++ + +SAK+ + F +A ++
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-43
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
KLV+VG GG GK+ + + F Y+PTI D +T + R D
Sbjct: 10 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE------DSYTKICSVDGIPARLDILD 63
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAGQE+FG +R+ Y G +++F + R ++ V + RV ++ P+VL GNK
Sbjct: 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123
Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+++ RQV + F ++ Y+E SAK N ++ F L R +
Sbjct: 124 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-43
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
M+ FKLV +G+ GKT+ + R + F+ Y+ TIG+ DF +
Sbjct: 3 MSSGDFGNPLR-KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI-----DFLSKTM 56
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
+R WDTAGQE+F L Y A++++D+T ++ W D+
Sbjct: 57 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER 116
Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
++ I+L GNK D+ + RQV ++ ++ N+ + E SAK+ YN ++ F +A L
Sbjct: 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176
Query: 173 G 173
G
Sbjct: 177 G 177
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-43
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+KLV+VG G GK+ + + F +Y+PTI D + + D
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE------DSYRKQVVIDGETCLLDILD 58
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAGQE++ +RD Y G+ + +F + +++++ + + RV E++P+VL GNK
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNK 118
Query: 127 VDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ +R V KQ R + + E SAK+ + F L R++
Sbjct: 119 CDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 4e-43
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 1 MALPSQQTVDY-PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-- 57
++ + + K+++VG GG GK+ + + EF + YEPT D +
Sbjct: 5 ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKK 58
Query: 58 ---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
+ +++ DTAGQE + +RD Y+ G+ + +F +T ++ + + RV
Sbjct: 59 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 118
Query: 115 --CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
EN+P +L GNK D+++ RQV ++ + N+ Y E SAK+ N +K F L R
Sbjct: 119 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 177
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 8e-43
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+K+V++G GG GK+ + +TG F +KY+PTI DF+ + D
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE------DFYRKEIEVDSSPSVLEILD 57
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAG E+F +RD Y +GQ I+++ + + +++++ + RV E +P++L GNK
Sbjct: 58 TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117
Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
VD+++ R+V + + + + E SAKS ++ F + R
Sbjct: 118 VDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 1e-42
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Query: 1 MALPSQQTVDY-PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-- 57
MA + + K+++VG GG GK+ + + EF + YEPT D +
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKK 54
Query: 58 ---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
+ +++ DTAGQE + +RD Y+ G+ + +F +T ++ + + RV
Sbjct: 55 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114
Query: 115 --CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
EN+P +L GNK D RQV ++ + N+ Y E SAK+ N +K F L R
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 1e-42
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
K+++VG GG GK+ + + EF + YEPT D + + +++ D
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKKVVLDGEEVQIDILD 58
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAGQE + +RD Y+ G+ + +F +T ++ + + RV EN+P +L GNK
Sbjct: 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118
Query: 127 VDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
D+++ RQV ++ + N+ Y E SAK+ N +K F L R
Sbjct: 119 SDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 1e-42
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
S K+ I+G GK++ + + G+F Y+PTI + FT N +
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE------NTFTKLITVNGQEYHLQLV 59
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
DTAGQ+++ Y I I+++ VT+ +++ + H L + IPI+L GN
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K D R + ++ N + E SAK N F + +
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 1e-42
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT----- 57
L Q D FK+++VG+ G GK+T + + +EP D +
Sbjct: 14 LYFQGQKDGI-FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPE-----DTYERRIMV 67
Query: 58 NCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-- 114
+ ++ +D Q GG LRD G +I+F VT R ++ VP L
Sbjct: 68 DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 127
Query: 115 CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
++P++L GNK D ++R+V ++ + ++ E SA ++N + F R
Sbjct: 128 HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 1e-42
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 15/181 (8%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE---------VHPLDF 55
S DY K + +GD G GKT+ + ++ G+F K+ T+G++ + D
Sbjct: 4 SDGDYDY-LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 56 FTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR- 113
G+ I WDTAG E+F L ++ +++FD+T ++ NV W L
Sbjct: 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 114 -VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
EN IVLCGNK D+++ R VK ++ K + Y+E SA + N L
Sbjct: 123 AYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182
Query: 171 L 171
+
Sbjct: 183 I 183
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-42
Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
K+VI+G GKT+ + + GEF + Y+PT+ + ++ + + D
Sbjct: 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE------NTYSKIVTLGKDEFHLHLVD 78
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAGQ+++ L + I ++++ VT+ +++ + + ++ L +P+VL GNK
Sbjct: 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138
Query: 127 VDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ R+V+A + + E SA+ N + F + +++
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-42
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 15/165 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+++V+ G GG GK++ V R + G F Y PTI D + + D
Sbjct: 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE------DTYRQVISCDKSVCTLQITD 62
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGN 125
T G +F ++ G I++F VT++ + + + ++ + ++ E+IP++L GN
Sbjct: 63 TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122
Query: 126 KVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
K D R+V ++ ++ + E SAK NYN ++ F L
Sbjct: 123 KCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-42
Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
Y SFK+V++G+G GKT+ V R+ +F K+ T+G F T ++
Sbjct: 4 AY-SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA-----SFLTKKLNIGGKRVNL 57
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
WDTAGQE+F L YY AI+++D+T +++ V W ++L ++ I + +
Sbjct: 58 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 117
Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK+D++ R V ++ ++ ++Y SAK N E+ FL L +++
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-42
Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 2 ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---- 57
++ + + KLV++GD G GK++ V R + +F + E TIG FF+
Sbjct: 2 SMAAAGNKSI-NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA-----AFFSQTLA 55
Query: 58 -NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 115
N ++F WDTAGQE++ L YY AII+FDVT + +++ W ++L
Sbjct: 56 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN 115
Query: 116 ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
N+ + L GNK D+ + R+V A+ T+ ++ L + E SAK+ N ++ F +AR+L
Sbjct: 116 PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 3e-42
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
FK+++VG+ G GK+T + + +E D + + ++ +D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE-----DTYERRIMVDKEEVTLIVYD 57
Query: 69 TAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
Q GG L+D G +I+F VT R ++ VP L ++P++L GN
Sbjct: 58 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 117
Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
K D ++R+V ++ + ++ E SA ++N + F R
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 3e-42
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 15/185 (8%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----------V 50
+ DY KL+ +GD G GKTTF+ R+ +F K+ T+G++
Sbjct: 14 LVPRGSGDYDY-LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72
Query: 51 HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 110
P K+ WDTAGQE+F L ++ ++MFD+T++ ++ NV W
Sbjct: 73 GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 132
Query: 111 LCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166
L CEN IVL GNK D+ + R+V +Q K + Y+E SA + N EK
Sbjct: 133 LQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192
Query: 167 LARKL 171
L +
Sbjct: 193 LLDLI 197
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 3e-42
Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 16/179 (8%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
MA + + + P++KLV+VGDGG GK+ + F Y+PTI D +
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE------DSYLKHT 59
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV- 114
+ DTAGQE+F +R+ Y G +I++ VT + ++++V +H+ + RV
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 115 -CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSN-YNFEKPFLYLAR 169
E+ P++L NKVD+ + R+V Q K N+ Y E SAK N +K F L R
Sbjct: 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 4e-42
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+++ + G GG GK++ V R + G F + Y PT+ D + + D
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE------DTYRQVISCDKSICTLQITD 57
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGN 125
T G +F ++ G I+++ +T+R + + + + +C + E+IPI+L GN
Sbjct: 58 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117
Query: 126 KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
K D +R+V++ + R + E SAK N+N ++ F L
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 6e-42
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 13/167 (7%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
K+ ++GD G GK++ V R + F+ PTIG F T +F W
Sbjct: 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA-----SFMTKTVPCGNELHKFLIW 77
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
DTAGQE+F L YY A+I++D+T + ++ + W ++L ENI + + GNK
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137
Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ + R+V K + E SAK+ N E+ F ++R++
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 7e-42
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
D+ FKL+I+GD G GK++ + R F Y TIGV DF N K++
Sbjct: 7 DH-LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV-----DFKIRTVEINGEKVKL 60
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
WDTAGQE+F + YY I+++DVT+ ++ NV W ++ + C+++ +L G
Sbjct: 61 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVG 120
Query: 125 NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
NK D + V+ + F + +Q +E SAK N N E+ F + +
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 7e-42
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
FKLV +G+ GKT+ + R + F+ Y+ TIG+ DF + +R WD
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI-----DFLSKTMYLEDRTVRLQLWD 71
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKV 127
TAG E+F L Y A++++D+T +++ W D+ ++ I+L GNK
Sbjct: 72 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 128 DVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ + RQV ++ ++ N+ + E SAK+ YN ++ F +A L
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 8e-42
Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 13/167 (7%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
FKLV++G+ GK++ V R + G+F + E TIG F T + ++F W
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA-----AFLTQTVCLDDTTVKFEIW 60
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNK 126
DTAGQE++ L YY Q AI+++D+T ++ W ++L R NI I L GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ N R V ++ ++ +L + E SAK++ N + F+ +A+KL
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 9e-42
Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
+ + ++ D K++++GD G GK+ + R + +F + TIG+ DF
Sbjct: 9 ASSGNGKSYDS-IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI-----DFKIKTV 62
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
N K++ WDTAGQE+F + YY I+++DVT T+ N+ W + +
Sbjct: 63 DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA 122
Query: 115 CENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++L GNK D++ R V A Q ++ + + E SAK++ N + F LA+ +
Sbjct: 123 NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-41
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 13/169 (7%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
D K++++GD G GK+ + R + +F + TIG+ DF N K++
Sbjct: 1 DS-IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI-----DFKIKTVDINGKKVKL 54
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
WDTAGQE+F + YY I+++D+T T+ N+ W + + + ++L
Sbjct: 55 QIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV 114
Query: 124 GNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D++ R V A Q ++ + + E SAK++ N + F LA+ +
Sbjct: 115 GNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 1e-41
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
DY FK+V++GD G GK+ + R EF + + TIGV +F T +
Sbjct: 21 TRDDEYDY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-----EFATRSIQVD 74
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
I+ WDTAG E++ + YY A++++D+ LTY+NV W ++L N
Sbjct: 75 GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 134
Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
I I+L GNK D+++ R V + F K L + E SA + N E F + ++
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-41
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
K+ ++GD G GK++ + R + F+ PTIG F T +F W
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGA-----SFMTKTVQYQNELHKFLIW 60
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
DTAG E+F L YY AII++D+T T+ + W R+L + +I + + GNK
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 127 VDVKN-RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ + R+V AK + + + E SAK+ N + F+ ++R++
Sbjct: 121 CDLTDVREVMERDAKD--YADSIHAIFVETSAKNAININELFIEISRRI 167
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 2e-41
Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 14/179 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
+ S + D+ FK+V++G+ G GKT V+R G F TIGV DF
Sbjct: 15 VPRGSMEDYDF-LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV-----DFMIKTV 68
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
N K++ WDTAGQE+F + YY I+ +D+T +++ +P W R++ +
Sbjct: 69 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 128
Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ VL GNK+D+ R+V ++ F +++ Y E SAK + N EK FL LA +L
Sbjct: 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-41
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
+ + ++ FK+V++G+ G GKT + R EF TIGV +F T
Sbjct: 14 LVPRGSEDYNF-VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV-----EFSTRTV 67
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
++ WDTAG E++ + YY A+++FD+T TY V W ++L
Sbjct: 68 MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA 127
Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
I ++L GNK D+ R+V ++ F L + E SA + N E F + +++
Sbjct: 128 EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 3e-41
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
+ Y FK +I+GD G GK+ + + +F TIGV +F T +
Sbjct: 7 TAPYNYSY-IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV-----EFGTRIIEVS 60
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 117
KI+ WDTAGQE+F + YY A++++D+T R TY ++ +W D + N
Sbjct: 61 GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 120
Query: 118 IPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
I+L GNK D++ R V ++ F + L + E SAK+ N E FL A+K+
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-41
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
D+ FK +++G GTGK+ + + + +F++ TIGV +F + ++
Sbjct: 23 DF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV-----EFGSRVVNVGGKTVKL 76
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
WDTAGQE+F + YY A++++D+T+R TY ++ W D + NI ++LC
Sbjct: 77 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILC 136
Query: 124 GNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D+ R+V + F ++ L + E SA + N E+ FL AR +
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 6e-41
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
DY FK+V++GD G GK+ + R EF + + TIGV +F T + I+
Sbjct: 3 DY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-----EFATRSIQVDGKTIKA 56
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
WDTAGQE++ + YY A++++D+ LTY+NV W ++L NI I+L
Sbjct: 57 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 116
Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D+++ R V + F K NL + E SA + N E+ F + ++
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 6e-41
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
+ V + K++I+G+ G GK++ + R F+ + TIGV DF +
Sbjct: 7 GMDEDVLT-TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGV-----DFKVKTISVD 60
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E 116
K + WDTAGQE+F L YY Q I+++DVT R T+ + W +L C
Sbjct: 61 GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN 120
Query: 117 NIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+I +L GNK+D +NR+V + + F RK ++ + E SAK+ + F L K+
Sbjct: 121 DIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 6e-41
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
+T D+ FK +++G+ GTGK+ + + + +F+ TIGV +F +
Sbjct: 5 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGV-----EFGSKIINVGGKY 58
Query: 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120
++ WDTAGQE+F + YY A++++D+T+R TY + W D + +NI I
Sbjct: 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 118
Query: 121 VLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+LCGNK D+ +R+V + F ++ L + E SA + N E+ F+ ARK+
Sbjct: 119 ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 7e-41
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+KLV++G GG GK+ + + G F +KY+PTI D + +C + D
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE------DSYRKQVEVDCQQCMLEILD 57
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAG E+F +RD Y +GQ +++ +TA+ T+ ++ + RV E++P++L GNK
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117
Query: 127 VD-VKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
D R V +Q + N + E SAKS N + F L R
Sbjct: 118 CDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-40
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
L Q DY FKL+I+G+ GKT+F+ R+ F + T+G+ DF
Sbjct: 12 ENLYFQGNFDY-MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI-----DFKVKTV 65
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
+ +++ WDTAGQE++ + YY I+M+D+T ++ V W +
Sbjct: 66 YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS 125
Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+N ++L GNK D++ R V ++ + ++E SAK N + + F L +
Sbjct: 126 WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-40
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
Y FK +I+GD G GK+ + + F+ ++ TIGV +F +
Sbjct: 13 GLVPRGSY-LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV-----EFGARMVNID 66
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 117
+I+ WDTAGQE F + YY A++++D+T R T+ ++ +W D + N
Sbjct: 67 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN 126
Query: 118 IPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ I+L GNK D+++ R V + + F R+ L + E SAK+ N E+ F+ A+++
Sbjct: 127 MVIMLIGNKSDLESRRDVKREEGEA--FAREHGLIFMETSAKTACNVEEAFINTAKEI 182
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-40
Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 39/196 (19%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE------------------------ 49
+K V++G+ GK++ V R F + TIG
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 50 -------------VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96
++ N I+F WDTAGQE++ + YY CAI++FD++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 97 ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAK 155
T TW L ++ N I+L NK+D QV +V + + NL + + SAK
Sbjct: 128 NSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAK 186
Query: 156 SNYNFEKPFLYLARKL 171
+ N + F LA ++
Sbjct: 187 TGTNIKNIFYMLAEEI 202
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-40
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
+ DY FKL+++G+ GKT+F+ R+ F + T+G+ DF +
Sbjct: 15 VPRGSDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI-----DFKVKTVYRHD 68
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
+I+ WDTAGQE++ + YY ++M+D+ + ++ V W + +N
Sbjct: 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128
Query: 119 PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++L GNK D+++ R V A+ +++E SAK N N ++ F L +
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-40
Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 23/185 (12%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKR--HLTGEFEKKYEPTIGVEVHPLDFFT---- 57
P T K+ +VG+ GK+ + +F K Y T GV +
Sbjct: 12 PIDITATL-RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGV-----EVVVAPVT 65
Query: 58 -NCGKIRF--YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--- 111
+ + DTAG + + Y+ AI++FDV++ ++++ W L
Sbjct: 66 IPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSA 125
Query: 112 -CRVCENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAK-SNYNFEKPFLY 166
+ VL NK D+ QV+ + L ++++SA + + PFL
Sbjct: 126 RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLS 185
Query: 167 LARKL 171
+A
Sbjct: 186 IATTF 190
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 3e-40
Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 16/165 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+K++++G G GK+ + G + G + + + +D
Sbjct: 3 YKVLLLGAPGVGKSALARI-FGGVEDGPEAEAAG------HTYDRSIVVDGEEASLMVYD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
Q+ L G +I++ VT + +++ L R +++PI+L GNK
Sbjct: 56 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 115
Query: 127 VD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
D V++R+V + + ++ E SA ++N + F + R
Sbjct: 116 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 5e-40
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
+ ++K+V+ GD GK++F+ R EF + T+GV DF +
Sbjct: 20 AKSFSSQK-AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV-----DFQMKTLIVD 73
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
+ WDTAGQE+F + Y+ ++++DVT ++ N+ W + E
Sbjct: 74 GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET 133
Query: 118 IPIVLCGNKVDVKN-------RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
+PI+L GNK D+++ + V + E SAK N + L+LAR
Sbjct: 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193
Query: 170 KL 171
++
Sbjct: 194 EV 195
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 7e-40
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
DY FKL+++GD G GK+ + R + + Y TIGV DF +
Sbjct: 26 MNPEYDY-LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DFKIRTIELDG 79
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
I+ WDTAGQE+F + YY I+++DVT + ++ NV W +++ R EN+
Sbjct: 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 139
Query: 119 PIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+L GNK D+ + V F + + E SAK+ N E+ F+ +A ++
Sbjct: 140 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 8e-40
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
DY FK++I+G+ GKT+F+ R+ F + T+G+ DF N +I+
Sbjct: 6 DY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI-----DFKVKTIYRNDKRIKL 59
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
WDTAG E++ + YY I+M+D+T ++ V W + +N ++L
Sbjct: 60 QIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 119
Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D+++ R V +++ +++E SAK N N ++ F L +
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 9e-40
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
+T DY FKL+++GD G GKT + R F + TIG+ DF + +
Sbjct: 3 KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGI-----DFKIRTIELDGKR 56
Query: 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPI 120
I+ WDTAGQE+F + YY ++++D+T ++ N+ W R++ ++
Sbjct: 57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 116
Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ GNK DV + RQV ++ +++ E SAK+N N E F LAR +
Sbjct: 117 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 1e-39
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
DY FKL+++GD G GK+ + R + + Y TIGV DF +
Sbjct: 9 MNPEYDY-LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DFKIRTIELDG 62
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
I+ WDTAGQE+F + YY I+++DVT + ++ NV W +++ R EN+
Sbjct: 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 122
Query: 119 PIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+L GNK D+ + V F + + E SAK+ N E+ F+ +A ++
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 3e-39
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
D FK+V++GD G GK+ + R EF + TIGV +F T
Sbjct: 5 DYGYDYDL-LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV-----EFATRTLEIE 58
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
+I+ WDTAGQE++ + YY A+I++D++ +Y+N W +L +N
Sbjct: 59 GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN 118
Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + L GNK D+ + R V ++ TF ++ L + E SA ++ N +K F L +
Sbjct: 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-39
Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+++V++GD G GKT+ + +E D + + D
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE------DVYERTLTVDGEDTTLVVVD 58
Query: 69 TAGQEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
T EK ++ G +I++ + R ++++ L R +++PI+L G
Sbjct: 59 TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118
Query: 125 NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
NK D + R+V ++ + ++ E SA +N + F + R
Sbjct: 119 NKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 7e-39
Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
+ D+ FKLV+VGD GKT V+R TG F ++ TIGV DF
Sbjct: 21 DPDEQYDF-LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV-----DFTMKTLEIQ 74
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
+++ WDTAGQE+F + YY AI+ +D+T R ++ +VP W D+ + N
Sbjct: 75 GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN 134
Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
I +L GNK D+ R+V + + + L E SAK + N E+ FL +A +L
Sbjct: 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 9e-39
Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 23/182 (12%)
Query: 2 ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKR--HLTGEFEKKYEPTIGVEVHPLDFFT-- 57
++ S ++ + +++V++G+ G GK+T + + E D +
Sbjct: 27 SVISSESGNTY-YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE------DTYERT 79
Query: 58 ------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 111
+ I W+ G+ ++ L D G +I++ +T R +++ L
Sbjct: 80 LMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL 137
Query: 112 CRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
R E+IPI+L GNK D V+ R+V + + ++ E SA +N ++ F +
Sbjct: 138 RRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197
Query: 168 AR 169
R
Sbjct: 198 VR 199
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-38
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 14/173 (8%)
Query: 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
DY FKL+++G+ G GK+ + R + Y TIGV DF +
Sbjct: 3 SEYDY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV-----DFKIKTVELDGKT 56
Query: 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120
++ WDTAGQE+F + YY II++DVT + ++ V W +++ R +
Sbjct: 57 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 116
Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+L GNK D+K+ R V+ F + + E SA + N E FL +AR++
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-38
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 15/171 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFT-----NCGKIR 63
D +FK+++VGD G GKT + R G F + T+G+ DF + K++
Sbjct: 8 DV-AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGI-----DFRNKVLDVDGVKVK 61
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVL 122
WDTAGQE+F + YY ++++DVT + ++ N+ W ++ ++ ++L
Sbjct: 62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121
Query: 123 CGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNKVD + R VK + ++ L + E SAK+ N + F +A++L
Sbjct: 122 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-38
Identities = 52/176 (29%), Positives = 96/176 (54%), Gaps = 15/176 (8%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
S + D+ +++I+G G GKT+ ++R F + + T+GV DF
Sbjct: 19 SPRPADF-KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV-----DFKIKTVELRG 72
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
KIR WDTAGQE+F + YY + I+++D+T + T+ ++P W + + + E+
Sbjct: 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132
Query: 119 PIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
++L GNK+D + +R++ +Q F ++ +++ E SAK N+N ++ FL L +
Sbjct: 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-38
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
KL I G G GK+ V R LT F +Y+PT+ + + +
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE------STYRHQATIDDEVVSMEI 80
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
DTAGQE R+G+ G+ ++++D+T R +++ V L + +N+ ++L G
Sbjct: 81 LDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139
Query: 125 NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 171
NK D +RQV ++ + +YE SA + N + F L R++
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-37
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Query: 2 ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-- 59
+L + + FK++++GD GKT R G F + E TIGV DF
Sbjct: 10 SLVPRGSRSR-IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV-----DFRERAVD 63
Query: 60 --GK-IRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-- 113
G+ I+ WDTAGQE+F + YY + + ++D+T ++ ++P W + +
Sbjct: 64 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123
Query: 114 VCENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKS---NYNFEKPFLY 166
+ +IP +L GNK D+++ QV A++ F ++ +E SAK+ N + E F+
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQK--FADTHSMPLFETSAKNPNDNDHVEAIFMT 181
Query: 167 LARKL 171
LA KL
Sbjct: 182 LAHKL 186
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-37
Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--------NCGKIRFY 65
+++V++G+ G GK+T + + E D + + I
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGE----DTYERTLMVDGESATIILLD 62
Query: 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLC 123
W+ G+ ++ L D G +I++ +T R +++ L R E+IPI+L
Sbjct: 63 MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120
Query: 124 GNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D V+ R+V + + ++ E SA +N ++ F + R++
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-37
Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---------EVHPLDFFTNCGKI 62
P K+ IVG+ +GK+ V R+LTG + ++ P G + + L
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLI------- 71
Query: 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
D G + + + +F + ++++ V + LC +P+
Sbjct: 72 ----RDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM 122
Query: 121 VLCGNKVDVKN---RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
VL G + + R + +A++++ K YYE A N E+ F +A+K
Sbjct: 123 VLVGTQDAISAANPRVIDDSRARKLS-TDLKRCTYYETCATYGLNVERVFQDVAQK 177
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-36
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
S KLV++G+ GK++ V R ++ +F + EPTIG F T N ++F W
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA-----AFLTQRVTINEHTVKFEIW 57
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
DTAGQE+F L YY + Q A++++DVT ++ W ++L ++I I L GNK
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117
Query: 127 VDVK----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+D R+V ++ +K L ++E SAK+ N FL + K+
Sbjct: 118 IDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 9e-36
Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 26/174 (14%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
P +L ++GD +GK++ + R LTG ++ E T + + +
Sbjct: 6 PELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTES------EQYKKEMLVDGQTHLVLI 58
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVL 122
+ AG + I +F + +++ V H L + + + L
Sbjct: 59 REEAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113
Query: 123 --CGNKVDVKN-RQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+++ + R V + K YYE A N ++ F +A+K+
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-34
Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 26/179 (14%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFT--------NCGKIR 63
KL+IVG+ G+GKTT +++ + + T+G+ D +
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGI-----DVKDWPIQIRDKRKRDLV 57
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVL 122
WD AG+E+F + + ++D++ + W ++ + P++L
Sbjct: 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVIL 117
Query: 123 CGNKVDVKNRQVKAKQVT-----FHRKKNLQ-----YYEISAKSNYNFEKPFLYLARKL 171
G +DV + + + ++ K+ ++ + + + K + +
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 5e-34
Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
L Q ++ L I+G G GK+ + LT F +Y+P + D ++
Sbjct: 12 ENLYFQGPLEV---NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE------DTYSSEE 62
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115
+ + DTA + + Y ++++ V +R ++ + ++ L
Sbjct: 63 TVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121
Query: 116 ----ENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLA 168
+IP +L GNK+D + RQV + V + ++E+SA ++ + + F
Sbjct: 122 KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
Query: 169 R 169
R
Sbjct: 182 R 182
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 9e-34
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 11/165 (6%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K+V+VGDG GKT + GE Y PT+ E + + WDTAGQ
Sbjct: 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF-ENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E++ LR Y ++ F V R ++ N+ T W ++ + VL G KVD+
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL-- 139
Query: 132 RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
R+ + VT +L Y E S+ + + F
Sbjct: 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 3e-33
Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 13/181 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
+ V K+ ++GDG GKT+ +K+ + F+ K T G+ V G
Sbjct: 29 ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88
Query: 61 --------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 112
+ F+ WD GQE + +++ D T N W R +
Sbjct: 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145
Query: 113 RVCENIPIVLCGNKVD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
+ P+++ NK+D + ++ K++ +++ IS K+ E L
Sbjct: 146 KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205
Query: 171 L 171
+
Sbjct: 206 V 206
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 9e-32
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K V VGDG GKT + + + +F Y PT+ + + + + WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E + LR Y ++ F + ++ +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127
Query: 132 ----RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPFLYLAR 169
+T + Y E S+K+ N + F +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 176
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-31
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K V VGDG GKT + + + F Y PT+ + + N + WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNLGLWDTAGQ 66
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E + LR Y I+ F + ++ +Y+NV W +L +PIVL G K+D+++
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126
Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
A +T + + L Y E S+KS N + F R
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-30
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
+ K V+VGDG GKT + + T F +Y PT+ + + + + + WDTAG
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 87
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
QE + LR Y +I F + + +++NV W+ ++ C N PI+L G K+D++
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147
Query: 131 N--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
+ ++ K +T+ + + +Y E SA + + F
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-30
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K V+VGDG GKT+ V + T + +Y PT + + +R DTAGQ
Sbjct: 20 GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQ 78
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
++F LR Y + ++ F V + +++NV W ++ C PI+L G + D++
Sbjct: 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138
Query: 132 --------RQVKAKQVTFH-------RKKNLQYYEISAKSNYN 159
+ K K V K Y E SA + N
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-30
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 17/168 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K V+VGDG GKT + + F ++Y PT+ + + + + +DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E + LR Y +I F V +++NV W +L N+P +L G ++D+++
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136
Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
+K K + + + L Y E SA + + F
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 6e-30
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 17/173 (9%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
S K+V+VGDGG GKT+ + G F + Y PT+ E + ++ + + WDTAGQ
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
+ + LR +Y ++ FDVT+ ++ N+ W+ ++ C+ +PI++ G K D++
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
R+ + VT+HR + + Y E SA+ + N F A
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-29
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI 62
+P + KLVIVGDG GKT + +F + Y PT+ E + D + ++
Sbjct: 15 VPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQV 73
Query: 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIV 121
WDTAGQE + LR Y ++ F + + + +N+P W ++ C N+PI+
Sbjct: 74 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII 133
Query: 122 LCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
L GNK D++ ++K + V +++ Y E SAK+ + F
Sbjct: 134 LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-29
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 17/161 (10%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGD GKT + F + Y PT+ E + F + +I WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-- 131
+ +R Y +I FD++ T +V W ++ C N ++L G K D++
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
+ V++ + N+ Y E SA + N
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 9e-29
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLV+VGDG GKT + EF + Y PT+ E + D + ++ WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-- 131
+ LR Y ++ F V + + +N+P W ++ C N+PI+L NK D+++
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145
Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
++K + V + + Y E SAK+ + F
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-28
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 17/163 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K+V+VGD GKT + F + Y PT+ E + F + +I WDT+G
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGS 86
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
+ +R Y +I FD++ T +V W ++ C N ++L G K D++
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146
Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
+ V++ + N+ Y E SA + N
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-28
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K V+VGDG GKT + + T F +Y PT+ + + + + + WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E + LR Y ++I F + + +++NV W+ ++ C N PI+L G K+D+++
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 132 --------RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPF 164
++ K +T+ ++Y E SA + + F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 4e-26
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
KLV+VGD GKT ++ + + Y PT+ E + T ++ WDT+G
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTACLETEEQRVELSLWDTSGS 85
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
+ +R Y ++ FD++ T + W ++ C + ++L G K D
Sbjct: 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 1e-21
Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 19/177 (10%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH---PLDFFTNCGK 61
S+ D K+ IV +T F+ + T + K
Sbjct: 86 SRSLEDCVECKMHIVE-----QTEFIDDQTFQP----HRSTALQPYIKRAAATKLASAEK 136
Query: 62 IRFYCWDTAGQEKF--GGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVC-- 115
+ ++C D G E+ + ++ DV+ + + + +L
Sbjct: 137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK 196
Query: 116 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
PIV+ K D R ++ KKNLQ E SA+SN N + F L + +
Sbjct: 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 4e-19
Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 20/163 (12%)
Query: 13 SFKLVIVGDGGTGKTTFVKR-------HLTGE---FEKKYEPTIGVEVHPLDFFTNCG-K 61
+FK+V G G +GKTT +K GE + E T+ + PLD G K
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73
Query: 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----- 116
RF+ + GQ + R + + D N + + E
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133
Query: 117 -NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKS 156
++PIV+ NK D+ + + + V + E A
Sbjct: 134 DDVPIVIQVNKRDLPDA-LPVEMVRAVVDPEGKFPVLEAVATE 175
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 3e-18
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR 63
+ K V+VGDG GKT + + T F +Y PT+ + + + + +
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVN 204
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVL 122
WDTAG E + LR Y +I F + + ++ +V W+ ++ C N PI+L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264
Query: 123 CGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
G K+D+++ ++ K +T+ + + +Y E SA +
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 6e-14
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 15 KLVIVGDGGTGKTTFVKR---HLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
KL+++G G+GK++ + + ++ TI VE L F N + WD G
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCGG 61
Query: 72 QEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR---DLCRVCENIPIVLC 123
Q+ F +D + Q I +FDV + K++ + + L + + I +
Sbjct: 62 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121
Query: 124 GNKVD 128
+K+D
Sbjct: 122 LHKMD 126
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 8e-12
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 11/122 (9%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
+++++G +GK++ K E T + + + + F WD G
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFPG 78
Query: 72 QEKFGGL---RDGYYIHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNK 126
Q F + + I + D + +V ++ + +K
Sbjct: 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138
Query: 127 VD 128
VD
Sbjct: 139 VD 140
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-11
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+L +VG +GKTTFV +G+F + PT+G + + G + WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQP 78
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
+F + + Y + M D + + + +L + + IP+++ GNK D
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 129 VKN 131
+
Sbjct: 136 LPG 138
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-10
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
++++VG GKTT + + GE PTIG V +++ I F WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNICFTVWDVGGQD 84
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
K L Y+ + Q I + D R + V +L ++ + + +++ NK D
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 129 VKN 131
+ N
Sbjct: 142 MPN 144
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-10
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++I+G G GKTT + R GE +PTIG V L + ++ WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSY----KNLKLNVWDLGGQT 73
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
YY I + D T + + T ++L + + + +++ NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDK---DRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 129 VKN 131
Sbjct: 131 QPG 133
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-10
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE PTIG V +++ I F WD GQ+K
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 56
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
L Y+ + Q I + D R + V +L R+ + +++ NK D+
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113
Query: 130 KN 131
N
Sbjct: 114 PN 115
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-10
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++I+G G GKTT + R GE PTIG V + + ++F WD G
Sbjct: 8 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY----KNLKFQVWDLGGLT 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
YY + I + D R + +L + E +V+ NK D
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 119
Query: 129 VKN 131
++
Sbjct: 120 MEQ 122
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 4e-10
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++IVG GKTT + + E PTIG V + RF WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQE 71
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
+ YY + + I++ D T R + + +L ++ +++ NK D
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
Query: 129 VKN 131
VK
Sbjct: 129 VKE 131
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-10
Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+L+++G GKTT +K+ + + PT+G + L+ + WD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNIKTLEH----RGFKLNIWDVGGQK 73
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
Y+ I + D R + + R+L + +++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANKQD 130
Query: 129 VKN 131
+
Sbjct: 131 LPG 133
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-09
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++++G GKT+ + R G+ PT+GV + L + I F WD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETLQY----KNISFEVWDLGGQT 77
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
Y+ I + D T R + +L + + +++ NK D
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 129 VKN 131
+ +
Sbjct: 135 LPD 137
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-09
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++IVG GKTT + + E PTIG V + RF WD GQE
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQE 76
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
+ YY + + I++ D T R + + +L ++ +++ NK D
Sbjct: 77 SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133
Query: 129 VKN 131
VK
Sbjct: 134 VKE 136
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-09
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 13/122 (10%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLV +G GKTT + ++ PT+ L + F +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 81
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
+ Y + + D + + +L + N+PI++ GNK+D
Sbjct: 82 ARRVWKNYLPAINGIVFLVDCADH---ERLLESKEELDSLMTDETIANVPILILGNKIDR 138
Query: 130 KN 131
Sbjct: 139 PE 140
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 7e-09
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
++ +G +GKTT + + + PTIG + + F +D +GQ
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS----SSLSFTVFDMSGQ 77
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-------NIPIVLCGN 125
++ L + YY GQ I + D + R + +L + IPI+ N
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDR---LRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134
Query: 126 KVDVKN 131
K+D+++
Sbjct: 135 KMDLRD 140
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 7e-09
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++++G GKTT +K+ + + PT G + + + WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKSVQS----QGFKLNVWDIGGQR 71
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
K Y+ + I + D R K ++L + E +P+++ NK D
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 129 VKN 131
+
Sbjct: 129 LLT 131
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-07
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
KL+ +G GKTT + +PT L G I+F +D G
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI----GNIKFTTFDLGGH 77
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKV 127
+ L Y+ + + D + +L + ++P V+ GNK+
Sbjct: 78 IQARRLWKDYFPEVNGIVFLVDAADP---ERFDEARVELDALFNIAELKDVPFVILGNKI 134
Query: 128 DVKN 131
D N
Sbjct: 135 DAPN 138
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-06
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 14/126 (11%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++ VG +GKT R LTG++ +I N D G E
Sbjct: 9 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYK-VNNNRGNSLTLIDLPGHES 66
Query: 75 FGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-------IPIVLCGN 125
LR ++F V + + V L +V + +++ N
Sbjct: 67 ---LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 126 KVDVKN 131
K D+
Sbjct: 124 KQDIAM 129
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 5e-06
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 15/122 (12%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
++++G GK++ K + + E T + I + G
Sbjct: 2 VLLMGVRRCGKSSICKV-VFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPG 55
Query: 72 QEKFGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRD----LCRVCENIPIVLCGNK 126
Q + D + +++ + ++ Y N T +V +I I + +K
Sbjct: 56 QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115
Query: 127 VD 128
VD
Sbjct: 116 VD 117
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 18/128 (14%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDFFTNCGKIRFYCWDTAGQE 73
++I G +GKT+ + T + + D D G
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYD------GSGVTLVDFPGHV 102
Query: 74 KFGGLRDGYYIHGQCAI--IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLC 123
K Y + ++F V + + K + T L + I I++
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 162
Query: 124 GNKVDVKN 131
NK ++
Sbjct: 163 CNKSELFT 170
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-05
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++I G +GKT+ + T + + + D G K
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSA------ADYDGSGVTLVDFPGHVK 67
Query: 75 FGGLRDGYYIHGQCAI--IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLCG 124
Y + ++F V + + K + T L + I I++
Sbjct: 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127
Query: 125 NKVDVKN 131
NK ++
Sbjct: 128 NKSELFT 134
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 8e-05
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 13 SFKLVIVGDGGTGKTTFV----KRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
F ++ VG+ G GK+T + GE +P + ++ + D + +++
Sbjct: 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101
Query: 69 TAG 71
T G
Sbjct: 102 TVG 104
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 3e-04
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
+ ++++VG GKTT + + GE PTIG V +++
Sbjct: 153 TPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----K 207
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---- 116
I F WD GQ+K L Y+ + Q I + D R + V +L R+
Sbjct: 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDEL 264
Query: 117 -NIPIVLCGNKVDVKN 131
+ +++ NK D+ N
Sbjct: 265 RDAVLLVFANKQDLPN 280
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 173 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 100.0 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 100.0 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 100.0 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 100.0 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 100.0 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 100.0 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 100.0 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 100.0 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 100.0 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 100.0 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 100.0 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 100.0 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 100.0 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 100.0 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 100.0 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 100.0 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 100.0 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 100.0 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 100.0 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 100.0 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 100.0 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 100.0 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 100.0 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 100.0 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 100.0 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 100.0 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 100.0 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 100.0 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 100.0 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 100.0 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 100.0 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 100.0 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 100.0 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 100.0 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 100.0 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 100.0 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 100.0 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 100.0 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 100.0 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 100.0 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 100.0 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 100.0 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 100.0 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 100.0 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 100.0 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 100.0 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 100.0 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 100.0 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 100.0 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 100.0 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 100.0 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 100.0 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 100.0 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.98 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.95 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.97 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.97 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.97 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.97 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.96 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.96 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.96 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.96 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.96 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.96 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.96 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.96 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.96 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.96 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.95 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.95 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.95 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.95 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.95 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.95 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.95 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.94 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.94 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.94 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.94 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.93 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.93 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.92 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.92 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.92 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.92 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.92 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.91 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.91 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.91 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.91 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.91 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.91 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.91 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.9 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.9 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.9 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.9 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.9 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.9 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.9 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.9 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.9 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.9 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.9 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.9 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.89 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.89 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.89 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.89 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.89 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.89 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.88 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.88 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.88 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.88 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.88 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.87 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.87 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.87 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.87 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.87 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.86 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.85 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.85 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.85 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.84 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.84 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.83 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.82 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.82 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.82 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.81 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.81 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.81 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.81 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.8 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.79 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.78 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.76 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.75 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.75 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.75 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.74 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.73 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.7 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.69 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.69 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.69 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.64 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.64 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.63 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.63 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.61 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.58 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.56 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.56 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.55 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.46 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.45 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.36 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.31 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.21 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.21 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.2 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.12 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.1 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.05 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.05 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.03 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.96 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.77 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.72 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.72 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.62 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.58 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.58 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.44 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.41 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.36 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.35 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 98.29 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.14 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.09 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.84 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.84 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.84 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.81 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.69 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.65 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.58 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.54 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.54 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.53 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.52 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.49 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.46 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.45 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.45 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.41 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.41 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.4 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.38 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.37 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.37 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.36 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.35 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.34 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.33 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.32 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.31 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.29 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.29 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.29 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.28 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.28 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.28 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.28 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.27 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.26 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.26 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.26 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.26 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.26 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.24 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.24 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.24 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.22 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.22 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.22 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.21 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.2 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.18 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.18 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.18 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.18 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.17 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.17 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.17 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.16 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.16 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.16 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.14 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.14 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.14 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.14 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.14 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.14 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.13 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.13 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.13 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.12 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.12 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.12 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.11 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.11 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.1 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.1 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.09 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.09 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.08 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.07 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.07 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.07 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.07 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.06 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.06 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.06 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.06 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.06 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.06 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.04 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.04 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.04 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.04 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.04 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.03 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.03 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.03 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.02 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.02 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.01 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.01 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.01 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.01 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.0 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.0 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 97.0 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.99 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.99 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.98 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.98 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.97 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 96.96 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.96 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.96 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.94 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.94 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.94 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.92 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.91 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.91 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.9 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.88 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.88 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.88 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.87 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.87 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.87 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.86 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.86 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.84 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.84 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.84 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.84 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.84 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.83 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.83 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.83 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.83 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.82 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.82 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.81 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.81 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.8 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.8 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.8 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.8 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.79 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.79 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.79 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.77 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.77 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.74 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.74 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.73 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.73 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.72 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.71 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.7 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.7 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.7 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.69 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.65 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.64 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.63 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.61 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.61 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.6 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.59 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.59 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.59 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.59 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.58 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.58 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.58 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.57 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.55 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.53 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.53 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.51 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.5 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.5 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.49 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.48 | |
| 3uc9_A | 233 | Increased recombination centers protein 6; rossman | 96.48 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.47 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.46 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.43 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.42 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.4 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.39 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.37 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.35 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.33 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.33 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.32 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.32 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.3 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.29 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.29 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.29 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.28 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.28 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.27 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.25 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.24 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.24 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.23 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.22 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.21 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.2 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.2 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.2 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.19 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.18 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.16 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.16 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.14 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.11 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.09 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.08 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.06 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.06 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 96.05 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.04 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.03 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.01 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.01 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.01 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 95.99 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.98 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.96 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 95.96 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 95.94 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.94 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.93 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.93 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.92 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.92 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.92 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.92 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 95.91 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.88 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.87 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.87 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 95.86 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.86 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.85 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.76 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.76 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.74 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.73 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.72 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.71 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.7 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.69 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 95.68 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.67 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.66 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 95.66 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=238.73 Aligned_cols=172 Identities=28% Similarity=0.517 Sum_probs=138.0
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030693 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|+.......+.+++||+++|.+|+|||||+++|+.+.+...+.+|.|.++.......++..+.+.+|||+|+++|..++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 55555555677889999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCC
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
.|++.++++++|||++++++|+.+..|+..+.... ++.|+++|+||+|+.+. .+ .++..+++.++++.|+++||++|
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg 160 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG 160 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence 99999999999999999999999999999987764 68999999999999763 33 34456899999999999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030693 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.||+++|+.|++.+.
T Consensus 161 ~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 161 YNVKQLFRRVAAALP 175 (216)
T ss_dssp BSHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=203.24 Aligned_cols=171 Identities=33% Similarity=0.535 Sum_probs=143.5
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030693 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|.++..+..+.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ......++..+.+.+||+||++.+...+.
T Consensus 6 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 84 (183)
T 3kkq_A 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMRE 84 (183)
T ss_dssp --------CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHH
T ss_pred cccccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHH
Confidence 33444555667789999999999999999999998888888888887666 55667778889999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccC-
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAK- 155 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~- 155 (173)
.+++.+|++++|||++++++++.+..|+..+... ..+.|+++|+||+|+.+ +.. ..+..+++...+++++++||+
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 164 (183)
T 3kkq_A 85 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKD 164 (183)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSS
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCC
Confidence 9999999999999999999999999999888764 36899999999999976 233 334567888889999999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030693 156 SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i~ 172 (173)
++.|++++|+++.+.+.
T Consensus 165 ~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 165 PPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp SCBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998774
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=211.91 Aligned_cols=166 Identities=81% Similarity=1.322 Sum_probs=152.4
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030693 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
+..+...+||+++|.+|+|||||+++++.+.+...+.++.|.+........++..+.+.+|||||++.+...+..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34456789999999999999999999888888888889999999988888888899999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|++++|||++++.++..+..|+..+....++.|+++|+||+|+.++....+...++...++.++++||++|.|+.++|++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999999888899999999999998876666667788888999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 169 l~~~l~ 174 (221)
T 3gj0_A 169 LARKLI 174 (221)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=201.37 Aligned_cols=167 Identities=32% Similarity=0.512 Sum_probs=145.4
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030693 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
+......+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 33445679999999999999999999999888777788888888777777888889999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
|++++|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++++++||++|.|++++
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999887765 68999999999999753 22 33456788888999999999999999999
Q ss_pred HHHHHHHhhC
Q 030693 164 FLYLARKLAG 173 (173)
Q Consensus 164 ~~~i~~~i~~ 173 (173)
|+++.+.+.+
T Consensus 169 ~~~l~~~i~~ 178 (179)
T 1z0f_A 169 FLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999998753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=200.60 Aligned_cols=162 Identities=33% Similarity=0.569 Sum_probs=143.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999988887777888888888778888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|+|+++++++..+..|+..+....++.|+++|+||+|+.+... ..+...++...+++++++||++|.|++++|+++.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT 166 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999988888999999999999976432 2345678888899999999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 167 ~~~~ 170 (181)
T 3tw8_B 167 ELVL 170 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=201.73 Aligned_cols=165 Identities=32% Similarity=0.546 Sum_probs=140.9
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
......+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34456799999999999999999999988887777788887777777777888899999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++++|+|++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...++.++++||+++.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887764 58999999999999763 33 334567888889999999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 176 ~~l~~~i~ 183 (191)
T 2a5j_A 176 INTAKEIY 183 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=201.24 Aligned_cols=163 Identities=31% Similarity=0.566 Sum_probs=145.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
....+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 34569999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.. .. .+...++...+++++++||+++.|++++|++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999987764 478999999999997643 22 3456788889999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 173 l~~~i~ 178 (196)
T 3tkl_A 173 MAAEIK 178 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=197.28 Aligned_cols=163 Identities=30% Similarity=0.596 Sum_probs=144.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 35799999999999999999999998888778888887777777777878899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|+|++++++++.+..|+..+....++.|+++|+||+|+.+. .. ..+...++...+++++++||+++.|++++++++.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999999998877789999999999999763 22 3445678888899999999999999999999999
Q ss_pred HHhhC
Q 030693 169 RKLAG 173 (173)
Q Consensus 169 ~~i~~ 173 (173)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T 1z2a_A 163 EKHLQ 167 (168)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 88753
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=205.99 Aligned_cols=163 Identities=35% Similarity=0.554 Sum_probs=135.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
....+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 34569999999999999999999998888777788888777777777777889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCC-cEEEEccCCCCChHHHHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~ 165 (173)
++|||++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...++ .++++||+++.|++++|+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988765 68999999999999763 33 3345678888898 999999999999999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
+|.+.+.
T Consensus 186 ~l~~~i~ 192 (201)
T 2hup_A 186 RVATELI 192 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=206.49 Aligned_cols=163 Identities=20% Similarity=0.334 Sum_probs=140.3
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.....+||+++|.+|+|||||+++|..+.+...+.++.+.+. ......++..+.+.+||++|++++..++..+++++|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345679999999999999999999999998888888888766 3456667788999999999999999999999999999
Q ss_pred EEEEEECCChhhhhc-HHHHHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcCC-cEEEE
Q 030693 89 AIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEI 152 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~ 152 (173)
+++|||+++++++.. +..|+..+....++.|+++|+||+|+.+. .. ..+..+++...++ +++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 68899999888889999999999999752 23 3345678888999 99999
Q ss_pred ccCCCCC-hHHHHHHHHHHhh
Q 030693 153 SAKSNYN-FEKPFLYLARKLA 172 (173)
Q Consensus 153 S~~~~~~-i~~~~~~i~~~i~ 172 (173)
||++|.| ++++|+++.+.+.
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccHHHHHHHHHHHHh
Confidence 9999998 9999999998775
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=197.60 Aligned_cols=163 Identities=33% Similarity=0.588 Sum_probs=144.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+.+.+||+++|.+|+|||||+++|..+.+...+.++.+.+........++..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34679999999999999999999998888877788888888877888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++|+|++++++++.+..|+..+... .++.|+++|+||+|+.+. .. ..+..+++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999888776 368999999999999753 22 23456788888999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 163 i~~~~~ 168 (170)
T 1r2q_A 163 IAKKLP 168 (170)
T ss_dssp HHHTSC
T ss_pred HHHHHh
Confidence 998764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=197.62 Aligned_cols=163 Identities=29% Similarity=0.529 Sum_probs=137.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999988887777888888877777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++++++||++|.|++++|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 58999999999999763 22 334567888889999999999999999999999
Q ss_pred HHHhhC
Q 030693 168 ARKLAG 173 (173)
Q Consensus 168 ~~~i~~ 173 (173)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=199.05 Aligned_cols=162 Identities=25% Similarity=0.531 Sum_probs=143.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 34699999999999999999999998887777888888887777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.. . ..+..+++...+++++++||++|.|++++|++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999988764 589999999999997632 3 234567888889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 180 ~~~i~ 184 (189)
T 2gf9_A 180 VDVIC 184 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=200.93 Aligned_cols=163 Identities=33% Similarity=0.580 Sum_probs=145.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34579999999999999999999999888888888888888878888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.++... .+..+++...++.++++||+++.|++++|++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999987764 57899999999999765544 3456788888999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 172 l~~~~~ 177 (195)
T 1x3s_A 172 LVEKII 177 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998775
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=198.66 Aligned_cols=165 Identities=33% Similarity=0.536 Sum_probs=143.6
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
..+.+.+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34566799999999999999999999998888777788888887777777888899999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++++|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999999999888764 58999999999999653 22 334567888889999999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 167 ~~l~~~~~ 174 (181)
T 2efe_B 167 YEIARRLP 174 (181)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHH
Confidence 99988654
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=197.01 Aligned_cols=161 Identities=33% Similarity=0.597 Sum_probs=142.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.+||+++|++|+|||||+++++.+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999888887788888888877777788888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc----ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~----~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+. ... .+..+++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998887764 68999999999998653 222 334577788899999999999999999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
++.+.+.
T Consensus 162 ~l~~~i~ 168 (170)
T 1ek0_A 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHHh
Confidence 9988764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=200.13 Aligned_cols=162 Identities=26% Similarity=0.421 Sum_probs=141.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||++++..+.+...+.++.+.+... ....++..+.+.+||+||++.+...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 3457999999999999999999999998888888888766653 566777889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcc---ccc-cHHHHHHHHHcCCc-EEEEccCCCCChHHH
Q 030693 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQV-KAKQVTFHRKKNLQ-YYEISAKSNYNFEKP 163 (173)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~---~~~-~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~ 163 (173)
++|||+++++++..+ ..|+..+....++.|+++|+||+|+.+ +.. ..+..+++...++. ++++||++|.|++++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEV 178 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHH
Confidence 999999999999997 568888888778999999999999975 222 34456788888888 999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+++.+.+.
T Consensus 179 ~~~l~~~i~ 187 (194)
T 3reg_A 179 FEKSVDCIF 187 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=196.24 Aligned_cols=164 Identities=32% Similarity=0.630 Sum_probs=140.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 34579999999999999999999998888877888888888777888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccccccH-HHHHHHH-HcCCcEEEEccCCCCChHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHR-KKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~-~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.++.... +..+++. ..+++++++||++|.|+.+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999999887654 578999999999997654443 4456666 5678999999999999999
Q ss_pred HHHHHHHHhhC
Q 030693 163 PFLYLARKLAG 173 (173)
Q Consensus 163 ~~~~i~~~i~~ 173 (173)
+|+++.+.+++
T Consensus 164 l~~~l~~~~~~ 174 (177)
T 1wms_A 164 AFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=205.59 Aligned_cols=172 Identities=30% Similarity=0.489 Sum_probs=136.1
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch
Q 030693 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
|+.+.........+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++++..++.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 44444444445679999999999999999999999888877788888777777777788889999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCC
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
.+++.+|++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+. ... .+...++...+++++++||+++
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999999999999987764 58899999999999763 333 3456788888999999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030693 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.|++++|++|.+.+.
T Consensus 161 ~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 161 ENVDKAFEELINTIY 175 (223)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=194.82 Aligned_cols=162 Identities=28% Similarity=0.520 Sum_probs=144.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.+.........+....+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 35799999999999999999999999888888889998888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++.+++.+..|+..+... .++.|+++|+||+|+.+. .. ..+...++...+++++++||+++.|++++|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 999999999999999999988876 468899999999999763 33 334557788889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 164 ~~~i~ 168 (170)
T 1z0j_A 164 SRRIP 168 (170)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 98765
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=201.61 Aligned_cols=162 Identities=35% Similarity=0.611 Sum_probs=143.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 34699999999999999999999999888888889888888778888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|+++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999987764 57899999999999753 33 334457778889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 184 ~~~i~ 188 (201)
T 2ew1_A 184 ACRLI 188 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=198.25 Aligned_cols=164 Identities=26% Similarity=0.462 Sum_probs=140.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC-cEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
+.+.+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999998887777778887777666776665 57899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc---CCCC-EEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p-~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
+++|+|++++++++.+..|+..+.... .+.| +++|+||+|+.+. .. .++...++...+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999988887653 3566 8999999999763 33 2345578888899999999999999999
Q ss_pred HHHHHHHHhhC
Q 030693 163 PFLYLARKLAG 173 (173)
Q Consensus 163 ~~~~i~~~i~~ 173 (173)
+|++|.+.+.+
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=197.06 Aligned_cols=161 Identities=25% Similarity=0.341 Sum_probs=141.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+.+. ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3579999999999999999999998888888888888776 556677788899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|+.++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998887664 48999999999999653 23 34456788899999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 163 l~~~~~ 168 (181)
T 3t5g_A 163 IILEAE 168 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=199.05 Aligned_cols=162 Identities=24% Similarity=0.372 Sum_probs=140.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 3569999999999999999999998888777778876554 345566777899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcCC-cEEEEcc
Q 030693 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|||+++++++..+. .|+..+....++.|+++|+||+|+.+. .. ..+..+++...++ +++++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 999999999999987 699999888789999999999999753 22 2344577778887 8999999
Q ss_pred CCCCChHHHHHHHHHHhhC
Q 030693 155 KSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~~ 173 (173)
++|.|++++|+++.+.+++
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=195.44 Aligned_cols=161 Identities=28% Similarity=0.558 Sum_probs=136.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 36899999999999999999999888877778888877777777777788999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.++.... +..+++...+++++++||++|.|++++|+++.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999888765 589999999999996654443 345788888999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 162 ~~~ 164 (170)
T 1g16_A 162 LIQ 164 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=198.25 Aligned_cols=163 Identities=21% Similarity=0.335 Sum_probs=136.4
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+.+.+||+++|.+|+|||||+++|+.+.+...+.++.+.+. ......++..+.+.+||++|++.+..+ ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345679999999999999999999999988888888888665 345666778899999999999988875 678999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEcc-CCCCChH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISA-KSNYNFE 161 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~-~~~~~i~ 161 (173)
+++|||++++++++.+..|+..+.... ++.|+++|+||+|+.+. ... .+..+++...+++++++|| ++|.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999999887764 68999999999999753 333 4456788889999999999 8999999
Q ss_pred HHHHHHHHHhhC
Q 030693 162 KPFLYLARKLAG 173 (173)
Q Consensus 162 ~~~~~i~~~i~~ 173 (173)
++|+++.+.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=193.06 Aligned_cols=161 Identities=32% Similarity=0.575 Sum_probs=138.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|.+|+|||||++++..+.+...+.++.+.... .....++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 5799999999999999999999998887777888775553 455667778999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHc-CCcEEEEccCCCCChHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|||++++++++.+..|+..+.... ++.|+++|+||+|+.+.. . ..+..+++... +++++++||++|.|+++++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988887753 589999999999997643 2 33445677776 789999999999999999999
Q ss_pred HHHHhhC
Q 030693 167 LARKLAG 173 (173)
Q Consensus 167 i~~~i~~ 173 (173)
+.+.+.+
T Consensus 161 l~~~i~~ 167 (167)
T 1c1y_A 161 LVRQINR 167 (167)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 9998753
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=194.97 Aligned_cols=165 Identities=28% Similarity=0.568 Sum_probs=135.1
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
+...+.+||+++|.+|+|||||+++|..+.+. ..+.++.+.+........++..+.+.+||+||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34456799999999999999999999888774 45677877777776777788889999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
|++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.. . ..+...++...+++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888765 589999999999997632 2 23445778888999999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+++.+.+.
T Consensus 165 ~~~l~~~~~ 173 (180)
T 2g6b_A 165 FTAIAKELK 173 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=198.05 Aligned_cols=162 Identities=30% Similarity=0.527 Sum_probs=143.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+........++..+.+.+||+||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 44699999999999999999999998888777888888888778888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...++.++++||++|.|++++|++|
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 58899999999999763 22 334557788889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 183 ~~~i~ 187 (193)
T 2oil_A 183 LKEIF 187 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=199.98 Aligned_cols=162 Identities=30% Similarity=0.568 Sum_probs=114.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 34699999999999999999999888877777888888877777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+. .. .++..+++...+++++++||++|.|++++|+++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887764 58999999999999763 33 344567888889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 166 ~~~i~ 170 (183)
T 2fu5_C 166 ARDIK 170 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=199.18 Aligned_cols=162 Identities=30% Similarity=0.517 Sum_probs=144.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|+.+.+...+.++.+.+........++..+.+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45799999999999999999999998887778889998888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-ccc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+ +.. ..+..+++...+++++++||+++.|++++|++|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 9999999999999999999987765 5899999999999975 233 344567888889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 181 ~~~i~ 185 (192)
T 2fg5_A 181 SRQIP 185 (192)
T ss_dssp HHTCC
T ss_pred HHHHH
Confidence 88654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=195.83 Aligned_cols=164 Identities=29% Similarity=0.553 Sum_probs=143.3
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+++++||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999888888888888888877778888888999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.. . ..+...++...+++++++||+++.|++++|+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887764 589999999999997532 2 3344577788899999999999999999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
+|.+.+.
T Consensus 170 ~l~~~~~ 176 (179)
T 2y8e_A 170 RVAAALP 176 (179)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9988653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=196.86 Aligned_cols=162 Identities=32% Similarity=0.583 Sum_probs=143.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999998888878888888887777788888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++++++.+..|+..+.... ++.|+++|+||+|+.+. ... .+..+++...+++++++||++|.|++++|+++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 68999999999999753 332 34567888889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 168 ~~~~~ 172 (186)
T 2bme_A 168 ARKIL 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=201.07 Aligned_cols=162 Identities=28% Similarity=0.530 Sum_probs=132.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 45699999999999999999999998887777888888887777888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-------ccc-cHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-------RQV-KAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-------~~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+ +.. ..+...++...+++++++||++|.|+.
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 185 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV 185 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence 9999999999999999998887764 5899999999999963 222 233457788889999999999999999
Q ss_pred HHHHHHHHHhh
Q 030693 162 KPFLYLARKLA 172 (173)
Q Consensus 162 ~~~~~i~~~i~ 172 (173)
++|++|.+.+.
T Consensus 186 el~~~l~~~i~ 196 (199)
T 2p5s_A 186 EAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=197.74 Aligned_cols=163 Identities=24% Similarity=0.413 Sum_probs=139.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+...+||+++|++|+|||||+++|..+.+...+.++.+.... ..+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 356799999999999999999999998887777888876653 4566677889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccc-------------ccc-HHHHHHHHHcC-CcEEEEc
Q 030693 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~~~S 153 (173)
++|||++++++++.+ ..|+..+....++.|+++|+||+|+.+. ... ++..+++...+ ++++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999998 6798888887789999999999999742 222 33456777776 7999999
Q ss_pred cC-CCCChHHHHHHHHHHhhC
Q 030693 154 AK-SNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 154 ~~-~~~~i~~~~~~i~~~i~~ 173 (173)
|+ ++.|++++|+++.+.+++
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 99 689999999999998763
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=198.11 Aligned_cols=164 Identities=30% Similarity=0.559 Sum_probs=140.1
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-CcchhhccCCC
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQ 87 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~ 87 (173)
...+.+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++++. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34567999999999999999999999988887778888888777777778888999999999999988 88999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCC---CCh
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN---YNF 160 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~---~~i 160 (173)
++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||+++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 9999999999999999999999988764 68999999999999763 33 33455788888999999999999 999
Q ss_pred HHHHHHHHHHhh
Q 030693 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
.++|++|++.+.
T Consensus 176 ~~l~~~l~~~i~ 187 (189)
T 1z06_A 176 EAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=198.54 Aligned_cols=163 Identities=34% Similarity=0.652 Sum_probs=142.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
....+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35679999999999999999999999888888888888888887888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccccccH-HHHHHHH-HcCCcEEEEccCCCCChHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHR-KKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~-~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.++.... +...++. ..+++++++||++|.|+++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999998887654 478999999999998654443 3445665 6678999999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|++|.+.+.
T Consensus 165 l~~~l~~~~~ 174 (207)
T 1vg8_A 165 AFQTIARNAL 174 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=198.81 Aligned_cols=161 Identities=27% Similarity=0.548 Sum_probs=143.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 46999999999999999999999888877778888888887778788888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|++|.
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999887765 58999999999999763 23 2345578888899999999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 167 ~~i~ 170 (203)
T 1zbd_A 167 DVIC 170 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=198.54 Aligned_cols=163 Identities=26% Similarity=0.389 Sum_probs=131.2
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
...+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++++..++..+++++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345679999999999999999999998887777777776544 3455667778899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcCC-cEEEE
Q 030693 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEI 152 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~ 152 (173)
+++|||++++++++.+. .|+..+....++.|+++|+||+|+.+. .. ..+...++...++ +++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 99999999999999997 699999888789999999999999752 22 2344567777777 89999
Q ss_pred ccCCCCChHHHHHHHHHHhh
Q 030693 153 SAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i~ 172 (173)
||++|.|++++|+++.+.+.
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=193.88 Aligned_cols=163 Identities=31% Similarity=0.533 Sum_probs=140.6
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+.+.+||+++|.+|+|||||+++|+.+.+...+.++.+.... .....++..+.+.+||+||++++...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3466899999999999999999999998888777888876655 456667778899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
+++|||+++++++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 999999999999999999988885542 58999999999999763 33 334557778889999999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 164 ~~l~~~~~ 171 (181)
T 2fn4_A 164 EQLVRAVR 171 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=198.11 Aligned_cols=162 Identities=30% Similarity=0.549 Sum_probs=143.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45699999999999999999999999888888888888887777778888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|+++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887764 57999999999999763 333 34557888889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 166 ~~~i~ 170 (206)
T 2bcg_Y 166 ARQIK 170 (206)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=197.69 Aligned_cols=165 Identities=28% Similarity=0.451 Sum_probs=139.4
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
.+....+||+++|.+|+|||||++++..+.+...+.++.+.+.. ..+..++..+.+.+||+||++++...+..+++.+|
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 34456799999999999999999999998887777777766554 33566777889999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcCC-cEEE
Q 030693 88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYE 151 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~ 151 (173)
++++|||++++++++.+ ..|+..+....++.|+++|+||+|+.+.. . ..+..+++...++ ++++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999998 56888888877899999999999997531 2 2234567777777 8999
Q ss_pred EccCCCCChHHHHHHHHHHhhC
Q 030693 152 ISAKSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i~~ 173 (173)
+||++|.|++++|++|.+.+++
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998764
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=199.48 Aligned_cols=164 Identities=28% Similarity=0.569 Sum_probs=136.0
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.....+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34457999999999999999999998888877778888888887778888888999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHc-CCcEEEEccCCCCChHHHH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKK-NLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~ 164 (173)
+++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+. ... .+..+++... ++.++++||++|.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999988887765 48999999999999763 333 3345666663 7899999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 182 ~~l~~~i~ 189 (192)
T 2il1_A 182 LKLVDDIL 189 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=205.19 Aligned_cols=162 Identities=27% Similarity=0.535 Sum_probs=144.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 35699999999999999999999988887777888888888788888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|+.++|+++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999998865 68999999999999763 22 334557888889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 181 ~~~i~ 185 (191)
T 3dz8_A 181 VDAIC 185 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=195.38 Aligned_cols=158 Identities=22% Similarity=0.419 Sum_probs=133.7
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
..+.+++||+++|.+|+|||||+++++.+.+...+.++.+ .. ...+.+++..+.+.+|||+|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 4456789999999999999999999999988877777743 33 3566778888999999999998876 888999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcc---cccc-HHHHHHHHHcC-CcEEEEccCCCCCh
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVK-AKQVTFHRKKN-LQYYEISAKSNYNF 160 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~---~~~~-~~~~~~~~~~~-~~~~~~S~~~~~~i 160 (173)
++++|||++++++++.+..|+..+.... ++.|+++|+||+|+.. +... .+..+++...+ +.++++||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 9999999999999999999999997763 5899999999999942 3333 34557888876 89999999999999
Q ss_pred HHHHHHHHHHhh
Q 030693 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
+++|+++++.+.
T Consensus 168 ~~lf~~l~~~i~ 179 (184)
T 3ihw_A 168 ERVFQDVAQKVV 179 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=200.11 Aligned_cols=161 Identities=27% Similarity=0.455 Sum_probs=138.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++++..++..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999998888777778877554 345566778899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc----------ccHHHHHHHHHcCC-cEEEEccCCCC
Q 030693 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ----------VKAKQVTFHRKKNL-QYYEISAKSNY 158 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (173)
+|||++++++++.+. .|+..+....++.|+++|+||+|+.+.. ...+..+++...++ +++++||++|.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 999999999999987 6999998877899999999999986532 23345577778886 99999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030693 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++|+++.+.+.
T Consensus 166 gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 166 NVKAVFDTAIKVVL 179 (212)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998775
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=199.03 Aligned_cols=162 Identities=31% Similarity=0.579 Sum_probs=133.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 34699999999999999999999988887777788887777777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...++.++++||++|.|++++|+++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887754 58999999999999753 23 234567888889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 183 ~~~i~ 187 (200)
T 2o52_A 183 ARTIL 187 (200)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=191.64 Aligned_cols=161 Identities=30% Similarity=0.530 Sum_probs=136.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++.+||+++|.+|+|||||++++..+.+...+.++.+.... .....++..+.+.+||+||++++...+..+++.+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 35799999999999999999999988887777777765543 44566777889999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|+|++++++++.+..|+..+..... +.|+++|+||+|+.+. .. ..+..+++...+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999999887754 8999999999999763 22 33456778888999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 161 l~~~i~ 166 (168)
T 1u8z_A 161 LMREIR 166 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=198.11 Aligned_cols=165 Identities=24% Similarity=0.312 Sum_probs=133.2
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-cchhhccCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHG 86 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~ 86 (173)
......+||+++|.+|+|||||+++|..........++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3445679999999999999999999764433323344444455555667788889999999999988764 778889999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
|++++|||+++++++..+..|+..+.... .+.|+++|+||+|+.+. ... .+..+++...++.++++||+++.|+++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 99999999999999999999999887764 48999999999999753 333 345678888899999999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|+++++.+.
T Consensus 178 lf~~l~~~i~ 187 (195)
T 3cbq_A 178 LFEGAVRQIR 187 (195)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998774
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=195.44 Aligned_cols=163 Identities=29% Similarity=0.530 Sum_probs=141.0
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEE-EEEEEecCc---------EEEEEEEeCCCcccccCcc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLR 79 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~G~~~~~~~~ 79 (173)
....+||+++|.+|+|||||+++|..+.+...+.++.+.+.. ......++. .+.+.+||+||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 345799999999999999999999988887777888887776 445555554 7899999999999999999
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccC
Q 030693 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAK 155 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~ 155 (173)
..+++.+|++++|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++++++||+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999999999999988765 58999999999999763 33 334557888889999999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030693 156 SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i~ 172 (173)
++.|++++|++|.+.+.
T Consensus 168 ~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIM 184 (195)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=194.58 Aligned_cols=165 Identities=29% Similarity=0.513 Sum_probs=139.4
Q ss_pred CCCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030693 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
+...++.+||+++|.+|+|||||+++|+.+.+...+.++.+... ...+..++..+.+.+||+||++++...+..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 34456789999999999999999999998888777777776554 34556677788999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
|++++|||++++++++.+..|+..+..... +.|+++|+||+|+.+. .. ..+..+++...+++++++||+++.|+++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 999999999999999999999999887754 8999999999999763 23 3345678888899999999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|++|.+.+.
T Consensus 171 l~~~l~~~i~ 180 (187)
T 2a9k_A 171 VFFDLMREIR 180 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=191.57 Aligned_cols=160 Identities=24% Similarity=0.324 Sum_probs=124.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-cchhhccCCCEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAII 91 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~ 91 (173)
.+||+++|++|+|||||++++..........++.+.+.....+..++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999887666555555555666666677788889999999999998876 78888999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|||++++++++.+..|+..+....+ +.|+++|+||+|+.+ +... .+..+++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999887754 899999999999975 3333 34557888899999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 162 ~~~i~ 166 (169)
T 3q85_A 162 VRQIR 166 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=194.28 Aligned_cols=162 Identities=27% Similarity=0.474 Sum_probs=138.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++.+||+++|.+|+|||||+++|..+.+...+.++.+... ......++..+.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999998888777777776544 345566778899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcCC-cEEEEcc
Q 030693 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+.+. .. ..+...++...++ +++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 999999999999987 688888887779999999999998653 12 2234567777887 9999999
Q ss_pred CCCCChHHHHHHHHHHhhC
Q 030693 155 KSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~~ 173 (173)
++|.|++++|+++.+.+.+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999988753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=199.54 Aligned_cols=162 Identities=24% Similarity=0.415 Sum_probs=138.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
....+||+++|.+|+|||||+++|..+.+...+.++.+.+. ...+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 34579999999999999999999999988877788887665 34566677889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCccc-------------ccc-HHHHHHHHHcC-CcEEEEc
Q 030693 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~~~S 153 (173)
++|||++++++++.+ ..|+..+....++.|+++|+||+|+.+. ... ++..+++...+ +.++++|
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 999999999999998 6799998887789999999999999742 222 33457777776 6999999
Q ss_pred cC-CCCChHHHHHHHHHHhh
Q 030693 154 AK-SNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~-~~~~i~~~~~~i~~~i~ 172 (173)
|+ ++.|++++|+++.+.++
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHh
Confidence 99 68999999999998875
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=197.74 Aligned_cols=162 Identities=28% Similarity=0.549 Sum_probs=141.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999988887777888887777777777888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+.... +...++...+++++++||+++.|++++|++|.
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999998887765 478999999999996554443 34567788899999999999999999999998
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 178 ~~~~ 181 (213)
T 3cph_A 178 KLIQ 181 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=195.55 Aligned_cols=160 Identities=31% Similarity=0.508 Sum_probs=138.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcE------------------------------
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK------------------------------ 61 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 61 (173)
..+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 46999999999999999999999998887788888877776666665544
Q ss_pred -------EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 62 -------IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 62 -------~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+|+..+..
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~~~~ 164 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNKFQV 164 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-CCS
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCcccccC
Confidence 899999999999999999999999999999999999999999999999887765 499999999999544444
Q ss_pred c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 135 K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
. .+..+++...+++++++||+++.|+.++|++|.+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 165 DILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3 4556788889999999999999999999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=196.33 Aligned_cols=164 Identities=29% Similarity=0.516 Sum_probs=140.7
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
..+.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3445679999999999999999999998888777778877554 345666777889999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
++++|||+++++++..+..|+..+..... +.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999887753 8999999999999763 23 33456788888999999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|++|.+.+.
T Consensus 168 ~~~l~~~i~ 176 (206)
T 2bov_A 168 FFDLMREIR 176 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=194.30 Aligned_cols=163 Identities=27% Similarity=0.556 Sum_probs=126.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
..+.+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..+ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3567999999999999999999999988877778888777777677666 556899999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccc--cc-cHHHHHHHH-HcCCcEEEEccCCCCC
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR--QV-KAKQVTFHR-KKNLQYYEISAKSNYN 159 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~--~~-~~~~~~~~~-~~~~~~~~~S~~~~~~ 159 (173)
+++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+... .. ..+..+++. ..+.+++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 999999999999999999998887654 58899999999999543 22 333456666 4678999999999999
Q ss_pred hHHHHHHHHHHhh
Q 030693 160 FEKPFLYLARKLA 172 (173)
Q Consensus 160 i~~~~~~i~~~i~ 172 (173)
++++|+++.+.++
T Consensus 165 i~~l~~~l~~~~~ 177 (182)
T 1ky3_A 165 VDTAFEEIARSAL 177 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=201.62 Aligned_cols=162 Identities=20% Similarity=0.178 Sum_probs=135.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCccccc-----------ccceeEEEEEEEE-EecCcEEEEEEEeCCCcccccC
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------EPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
....+||+++|.+|+|||||++. +.+.+...+ .++.+.+...... ..++..+.+.+|||||++++..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 34579999999999999999965 555555443 3455555555444 5567789999999999999999
Q ss_pred cchhhccCCCEEEEEEECC------ChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEE
Q 030693 78 LRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYY 150 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~ 150 (173)
.+..+++++|++++|||++ +.+++..+..|+..+....++.|+++|+||+|+.+.....+..+++...++ +++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVL 169 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEE
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEE
Confidence 9999999999999999999 556777888888887555579999999999999887666677788888898 999
Q ss_pred EEccCCCCChHHHHHHHHHHhh
Q 030693 151 EISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++||++|.|++++|++|.+.+.
T Consensus 170 ~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 170 EAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999998775
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=196.25 Aligned_cols=161 Identities=29% Similarity=0.458 Sum_probs=132.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
+.++||+++|.+|+|||||+++|..+.+...+.++.+.+... ....++..+.+.+||+||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 457899999999999999999999888877777777655543 3566777899999999999999999999999999999
Q ss_pred EEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcCC-cEEEEcc
Q 030693 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|||++++++++.+ ..|+..+....++.|+++|+||+|+.+.. . ..+...++...++ .++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999998 56888888877899999999999997531 2 2234467777777 8999999
Q ss_pred CCCCChHHHHHHHHHHhh
Q 030693 155 KSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~ 172 (173)
++|.|++++|++|.+.++
T Consensus 182 ~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 182 KTKEGVREVFETATRAAL 199 (207)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999999875
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=197.63 Aligned_cols=161 Identities=23% Similarity=0.345 Sum_probs=136.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999988888788887666 455556667889999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.. .. .+...++...+++++++||++|.|++++|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999887653 578999999999997533 33 3456788889999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 181 l~~~i~ 186 (201)
T 3oes_A 181 VIQEIA 186 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=191.50 Aligned_cols=161 Identities=27% Similarity=0.524 Sum_probs=137.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|.+|+|||||+++|..+.+...+.++.+ +........++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999998888777777765 444455667788889999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.++.... ....++...+++++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887753 589999999999998755444 4457888889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 161 ~~~~~ 165 (189)
T 4dsu_A 161 VREIR 165 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=197.03 Aligned_cols=162 Identities=28% Similarity=0.450 Sum_probs=124.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.... .....++..+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45799999999999999999999988877777777664432 22344556788899999999999999999999999999
Q ss_pred EEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc------------ccHHHHHHHHHcCC-cEEEEccCC
Q 030693 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAKQVTFHRKKNL-QYYEISAKS 156 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~-~~~~~S~~~ 156 (173)
+|+|++++++++.+. .|+..+....++.|+++|+||+|+.+.. ...+..+++...++ +++++||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 999999999999987 6999888877799999999999986532 22344577777886 999999999
Q ss_pred CCChHHHHHHHHHHhhC
Q 030693 157 NYNFEKPFLYLARKLAG 173 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i~~ 173 (173)
|.|++++|+++.+.+++
T Consensus 165 ~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CTTHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998764
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=190.10 Aligned_cols=160 Identities=28% Similarity=0.519 Sum_probs=137.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|++|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 579999999999999999999998888777777776443 4566677788899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999988887654 58999999999998653 33 334457788889999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T 1kao_A 161 VRQMN 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98763
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=197.72 Aligned_cols=162 Identities=28% Similarity=0.520 Sum_probs=118.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34679999999999999999999998887777777775443 34566777889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-------------cc-HHHHHHHHHcCC-cEEEEc
Q 030693 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKNL-QYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~~-~~~~~~~~~~~~-~~~~~S 153 (173)
++|||++++.+++.+. .|+..+....++.|+++|+||+|+.... .. .+...++...++ +++++|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 9999999999999987 6999988877899999999999997632 22 234577778887 899999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 030693 154 AKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~ 172 (173)
|++|.|++++|+++.+.++
T Consensus 190 A~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=186.42 Aligned_cols=160 Identities=28% Similarity=0.522 Sum_probs=138.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 468999999999999999999998887777677765443 3455667778899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcC--CCCEEEEEeCCCCcccccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+|++++.+++.+..|+..+....+ +.|+++|+||+|+.++... .+..+++...+++++++||+++.|++++++++.
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999999998877653 8999999999999774443 345578888899999999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=190.77 Aligned_cols=160 Identities=21% Similarity=0.309 Sum_probs=126.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc--ccCcchhhccCCCEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQCA 89 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~~~~~~~~ 89 (173)
+.+||+++|++|+|||||+++|..+.+... .++.+.+.....+..++..+.+.+||+||++. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 479999999999999999999887766543 44566676666777788889999999999987 566778889999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
++|||++++++++.+..|+..+... .++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999999999999998888764 358999999999999763 333 334567778899999999999999999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
+|.+.+.
T Consensus 162 ~l~~~~~ 168 (175)
T 2nzj_A 162 GVVRQLR 168 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=190.60 Aligned_cols=164 Identities=27% Similarity=0.504 Sum_probs=128.6
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
...++.+||+++|.+|+|||||+++|+.+.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 3446789999999999999999999998887776667765444 345566777889999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCcccccc-HHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.++... .+..+++...+++++++||+++.|+++++
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887765 38999999999999774443 34567888889999999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 175 ~~l~~~~~ 182 (190)
T 3con_A 175 YTLVREIR 182 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=195.52 Aligned_cols=162 Identities=26% Similarity=0.458 Sum_probs=135.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||++++..+.+...+.++.+. ........++..+.+.+||+||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 356799999999999999999999988887777777753 3445566777889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcCC-cEEEEc
Q 030693 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S 153 (173)
++|||++++.+++.+. .|+..+....++.|+++|+||+|+.+.. . ..+...++...++ +++++|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 9999999999999997 6998888887899999999999987532 1 2334567777776 599999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 030693 154 AKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~ 172 (173)
|++|.|++++|+++.+.++
T Consensus 186 A~~g~gi~~l~~~l~~~~l 204 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAVL 204 (204)
T ss_dssp TTTCTTHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999998753
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=195.37 Aligned_cols=161 Identities=19% Similarity=0.346 Sum_probs=129.3
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
..+....||+++|.+|+|||||+++|..+.+.. .+.+|.+.+..... ...+.+.+|||||++++...+..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFE----KGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEE----ETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEE----eCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 444567999999999999999999999888877 67888886555432 4678999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhc---------CCCCEEEEEeCCCCccccccHHHHH------HHHHcCCcEEE
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYYE 151 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~p~ivv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~~ 151 (173)
|++++|||+++++++..+..|+..+.... ++.|+++|+||+|+.+.....+..+ ++...++.+++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence 99999999999999999988888776542 2899999999999987533222221 12456788999
Q ss_pred EccCCCCChHHHHHHHHHHhh
Q 030693 152 ISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+||++|.|++++|++|.+.+.
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=187.73 Aligned_cols=158 Identities=19% Similarity=0.272 Sum_probs=113.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|+|||||++++...... ...++.+.+. ......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999997755443 3455666555 34566778889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
||++++++++.+..|+..+... .++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 9999999999999998888765 368999999999999753 333 334578888899999999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 160 ~~~~ 163 (166)
T 3q72_A 160 RQIR 163 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=190.28 Aligned_cols=155 Identities=21% Similarity=0.386 Sum_probs=128.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|.+|+|||||+++|..+.+.. +.++.+... ...+..++..+.+.+||+||+++ ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 568999999999999999999999888876 677777444 45566777889999999999986 46889999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCcc---cccc-HHHHHHHHHc-CCcEEEEccCCCCChH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN---RQVK-AKQVTFHRKK-NLQYYEISAKSNYNFE 161 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~---~~~~-~~~~~~~~~~-~~~~~~~S~~~~~~i~ 161 (173)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+ +... .+..+++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999998776665542 5889999999999942 3333 3445666665 6899999999999999
Q ss_pred HHHHHHHHHhh
Q 030693 162 KPFLYLARKLA 172 (173)
Q Consensus 162 ~~~~~i~~~i~ 172 (173)
++|+++.+.+.
T Consensus 158 ~lf~~l~~~~~ 168 (178)
T 2iwr_A 158 RVFQEVAQKVV 168 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=196.86 Aligned_cols=164 Identities=45% Similarity=0.817 Sum_probs=138.7
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC-cEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
.....+||+++|.+|+|||||+++|+.+.+...+.++.+.+.......... ..+.+.+||+||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 345679999999999999999999988888877788888777776665543 4489999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhcC-CCCEEEEEeCCCCccc-cccHH-HHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++++|+|++++.+++.+..|+..+..... +.|+++|+||+|+.+. ....+ ...++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999887754 5899999999999764 33333 446777889999999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
+++.+.+.
T Consensus 167 ~~l~~~~~ 174 (218)
T 4djt_A 167 LHLARIFT 174 (218)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=199.22 Aligned_cols=162 Identities=33% Similarity=0.542 Sum_probs=139.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCc----------EEEEEEEeCCCcccccCcch
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~G~~~~~~~~~ 80 (173)
...+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+.+++. .+.+.+||+||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 34699999999999999999999988887777788887776666666655 78999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCC
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~ 156 (173)
.+++.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+..+++...+++++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 99999999999999999999999999988876654 58999999999999763 33 3345678888899999999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030693 157 NYNFEKPFLYLARKLA 172 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i~ 172 (173)
+.|++++|++|.+.+.
T Consensus 183 g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIM 198 (217)
T ss_dssp TBTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=192.10 Aligned_cols=160 Identities=28% Similarity=0.414 Sum_probs=137.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4579999999999999999999999888877788877554 34566677889999999999988 778888999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCC-ChHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNY-NFEKPFL 165 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~ 165 (173)
+|||++++++++.+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++++++||++|. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 9999999999999999998887753 58999999999999763 33 334557888889999999999999 9999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
+|++.+.
T Consensus 184 ~l~~~i~ 190 (196)
T 2atv_A 184 ELCREVR 190 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998774
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=200.01 Aligned_cols=162 Identities=24% Similarity=0.402 Sum_probs=104.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--CcccccccceeEEEEEEEEEecCc--EEEEEEEeCCCcccccCcchhhccCC
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHG 86 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~ 86 (173)
...+||+++|.+|+|||||+++|..+ .+...+.++.+.+.....+..++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35689999999999999999998887 677677788877777677777766 89999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcC----CCCEEEEEeCCCCcc--cccc-HHHHHHHHHcCCcEEEEccCC-CC
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQVK-AKQVTFHRKKNLQYYEISAKS-NY 158 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~~~S~~~-~~ 158 (173)
|++++|||++++.+++.+..|+..+....+ +.|+++|+||+|+.+ +... .+..+++...+++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999987754 899999999999976 3333 455678888899999999999 99
Q ss_pred ChHHHHHHHHHHhh
Q 030693 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|+.++|++|.+.+.
T Consensus 178 gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 178 DADAPFLSIATTFY 191 (208)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=186.82 Aligned_cols=159 Identities=25% Similarity=0.430 Sum_probs=134.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.+||+++|.+|+|||||++++..+.+...+.++.+.+.. .....++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4699999999999999999999988877667777765543 344566777899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|+|++++.+++.+..|+..+.+.. ++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999888888777653 58999999999999763 232 3445677788899999999999999999999
Q ss_pred HHHHh
Q 030693 167 LARKL 171 (173)
Q Consensus 167 i~~~i 171 (173)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=190.74 Aligned_cols=161 Identities=26% Similarity=0.426 Sum_probs=137.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
...+||+++|.+|+|||||+++|..+.+...+.++.+.+.. .....++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45699999999999999999999988887777777775544 34556777889999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.++.... +...++...+++++++||++|.|++++|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999888877776643 478999999999998755443 445677888999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 165 l~~~~~ 170 (199)
T 2gf0_A 165 LLTLET 170 (199)
T ss_dssp HHHHCS
T ss_pred HHHHHh
Confidence 988653
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=191.08 Aligned_cols=160 Identities=21% Similarity=0.334 Sum_probs=127.6
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCC-cccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
...+.+||+++|.+|+|||||+++|..+. +...+.++.+...... .. ..+.+.+||+||++.+...+..+++++|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF--KS--SSLSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEE--EC--SSCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEE--EE--CCEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34567999999999999999999988776 4555677777544333 33 3478999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCC
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNY 158 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~ 158 (173)
++++|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+.....+..+... ..++.++++||++|.
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 9999999999999999988888876643 5899999999999977544444444442 235789999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030693 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++|++|.+.+-
T Consensus 173 gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 173 GLQEGVDWLQDQIQ 186 (190)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988753
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=202.99 Aligned_cols=163 Identities=31% Similarity=0.561 Sum_probs=134.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
....+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 34569999999999999999999988888777778888788777788888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... ..+...++...+++++++||+++.|++++|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999887764 4789999999999976332 23456788888999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|.+.+.
T Consensus 190 l~~~l~ 195 (199)
T 3l0i_B 190 MAAEIK 195 (199)
T ss_dssp HTTTTT
T ss_pred HHHHHH
Confidence 987664
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=189.35 Aligned_cols=157 Identities=17% Similarity=0.270 Sum_probs=129.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+. ...+.+|.+.+...... ..+.+.+|||||++++...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH----RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE----TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999988777 66677888766544443 4688999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|++++++++.+..|+..+... .++.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence 999999999999998888877654 3689999999999997754333332222 134568999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+++.+.+.
T Consensus 171 ~~~l~~~i~ 179 (186)
T 1ksh_A 171 IDWLLDDIS 179 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=191.81 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=125.9
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
....+.+||+++|.+|+|||||+++|..+.+ ..+.++.+.+...... ..+.+.+||+||++++...+..+++++|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEE----TTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEE----CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3445679999999999999999999888877 5567777755543333 3489999999999999999999999999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCCh
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i 160 (173)
++++|+|++++++++.+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...++.++++||++|.|+
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 999999999999999998888887654 3689999999999997643333333222 224568999999999999
Q ss_pred HHHHHHHHHH
Q 030693 161 EKPFLYLARK 170 (173)
Q Consensus 161 ~~~~~~i~~~ 170 (173)
+++|++|.+.
T Consensus 171 ~~l~~~l~~~ 180 (181)
T 2h17_A 171 CQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=190.53 Aligned_cols=159 Identities=23% Similarity=0.394 Sum_probs=130.5
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||+++|..+.+...+.++.+.+..... ...+.+.+||+||++++...+..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEE----ETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEE----eCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 345799999999999999999999988887777888887765432 3568899999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|++++++++.+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...++.++++||++|.|+++
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence 9999999999999998888877654 3689999999999997643222222211 12356789999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|++|.+.+.
T Consensus 175 l~~~l~~~~~ 184 (188)
T 1zd9_A 175 TLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHH
Confidence 9999988653
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=189.78 Aligned_cols=157 Identities=23% Similarity=0.328 Sum_probs=125.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+. .+.+|.+.+...... ..+.+.+||+||++++...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEE----TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999998877776 567777755443333 3489999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|++++++++.+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence 999999999999999988888765 3689999999999997644333333332 234568999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
+++|.+.+.
T Consensus 169 ~~~l~~~~~ 177 (187)
T 1zj6_A 169 LEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=192.46 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=120.5
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|++|+|||||++++..+.+. .+.+|.+.+.. .+..++ +.+.+|||||++.++..+..+++.+|++
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 96 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGI 96 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEE
Confidence 356789999999999999999998877654 45677766543 333333 8999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH-----------------cCCcEE
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----------------KNLQYY 150 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~ 150 (173)
++|+|++++++++.+..|+..+.+. ..+.|+++|+||+|+.+....++..+++.. .+++++
T Consensus 97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 97 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 9999999999999999988888654 368999999999999874333444444432 346799
Q ss_pred EEccCCCCChHHHHHHHHHHh
Q 030693 151 EISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~~i 171 (173)
++||++|.|++++|+++.+.+
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 999999999999999998653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=189.16 Aligned_cols=156 Identities=18% Similarity=0.272 Sum_probs=124.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|++|+|||||++++..+.+. .+.++.+.+... +..+ ++.+.+|||||++.++..+..+++.+|++
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 94 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEE--LAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNGI 94 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEE--EEET--TEEEEEEECCCSGGGTTSGGGGCTTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEE--EEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 355789999999999999999999887764 456777765433 3333 38999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH------------cCCcEEEEccC
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK------------KNLQYYEISAK 155 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~S~~ 155 (173)
++|+|++++++++.+..|+..+... .++.|+++|+||+|+.+....++..+.+.. .+++++++||+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 95 VFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 9999999999999999988887653 368999999999999874333333343322 35679999999
Q ss_pred CCCChHHHHHHHHHH
Q 030693 156 SNYNFEKPFLYLARK 170 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~ 170 (173)
+|.|++++|+++.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=190.46 Aligned_cols=162 Identities=20% Similarity=0.324 Sum_probs=129.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCC--cccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc-ccCcchhhccCC
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG 86 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~ 86 (173)
....+||+++|.+|+|||||+++|.+.. +... .++.+.+.....+.+++..+.+.+|||+|++. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 3456999999999999999999987533 2333 23455565556677788888999999999876 455677788999
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCcc-ccccH-HHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
+++++|||++++++|+.+..|+..+... .+++|+++|+||+|+.+ +.... +...++...+++++++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999998877653 35899999999999975 33333 34467778889999999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|+++++.+.
T Consensus 193 lf~~l~~~i~ 202 (211)
T 2g3y_A 193 LFEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=181.19 Aligned_cols=156 Identities=21% Similarity=0.351 Sum_probs=127.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+.+||+++|.+|+|||||++++..+.+.. +.++.+.+...... ....+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTY----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEE----TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccceEEEEE----CCEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 46999999999999999999998877653 56677755544333 36789999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHH-----HHHcCCcEEEEccCCCCChHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+|+++++++..+..|+..+... .++.|+++|+||+|+.+.....+.... +...+++++++||++|.|++++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHH
Confidence 99999999999888888777654 268999999999999775332222221 22345689999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
+++.+.+.
T Consensus 161 ~~l~~~i~ 168 (171)
T 1upt_A 161 EWLVETLK 168 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998774
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=187.14 Aligned_cols=158 Identities=22% Similarity=0.318 Sum_probs=121.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+.+.+||+++|++|+|||||++++..+.+.. +.+|.+....... ...+.+.+||+||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE----YKNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEEEEEE----ETTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeEEEEE----ECCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 4567999999999999999999988777653 4566664333222 2558999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHH-----HHHcCCcEEEEccCCCCChHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|++++++++.+..|+..+... .++.|+++|+||+|+.+.....+..+. +...+++++++||++|.|+++
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHH
Confidence 9999999999999998888887653 258999999999999765322222221 112345799999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|++|.+.+.
T Consensus 181 l~~~l~~~i~ 190 (192)
T 2b6h_A 181 GLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999998875
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=186.03 Aligned_cols=158 Identities=17% Similarity=0.306 Sum_probs=125.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+.+.+||+++|++|+|||||++++..+.+ ..+.++.|.+...... ..+.+.+||+||++.++..+..+++.+|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~----~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQS----QGFKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEE----TTEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 35679999999999999999999776644 4456777755443333 367899999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|+++++++..+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|+++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHH
Confidence 9999999999999988888877543 3689999999999997654333222221 12356799999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|+++.+.+.
T Consensus 168 l~~~l~~~~~ 177 (181)
T 1fzq_A 168 GMNWVCKNVN 177 (181)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=182.69 Aligned_cols=154 Identities=24% Similarity=0.327 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||++++..+.+.. +.||.+..... + ....+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEE--E--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEE--E--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999998777654 46676633322 2 235678999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHH-----HHHcCCcEEEEccCCCCChHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|+++++++..+..|+..+... .++.|+++|+||+|+.+.....+.... +...+++++++||++|.|++++|++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 999999999988888877653 368999999999999764322222221 1123457999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+.+.+.
T Consensus 156 l~~~i~ 161 (164)
T 1r8s_A 156 LSNQLR 161 (164)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 998764
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=181.89 Aligned_cols=161 Identities=20% Similarity=0.339 Sum_probs=126.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--CcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc-ccCcchhhccCCC
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQ 87 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~ 87 (173)
...+||+++|.+|+|||||+++|.+. .+...+ ++.+.+.....+.+++..+.+.+|||+|.+. ++.++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45799999999999999999998853 233332 3345555556667788888999999999876 5667788899999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCcc-ccccH-HHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
++++|||++++++++.+..|+..+... .++.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999998888877664 25799999999999975 33333 334667778899999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+++++.+.
T Consensus 163 f~~l~~~~~ 171 (192)
T 2cjw_A 163 FEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998763
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=186.73 Aligned_cols=163 Identities=14% Similarity=0.143 Sum_probs=121.8
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcc---hhhc
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR---DGYY 83 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~---~~~~ 83 (173)
..+.+.+||+++|.+|+|||||++++. +.+..........+......... +..+.+.+||++|+++|.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVF-HKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHH-SCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHH-hcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 334567999999999999999999855 44443322222223333333333 567899999999999987766 8999
Q ss_pred cCCCEEEEEEECCCh--hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--------ccH-HHHHHHH----HcCCc
Q 030693 84 IHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKA-KQVTFHR----KKNLQ 148 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~-~~~~~~~----~~~~~ 148 (173)
+++|++++|||++++ +++..+..|+..+....++.|+++|+||+|+.+.. ... ...+++. ..++.
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 999999999999997 67777778888876667799999999999986521 111 2235565 56789
Q ss_pred EEEEccCCCCChHHHHHHHHHHhh
Q 030693 149 YYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 149 ~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++++||++ .|+.++|+.+++.++
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHHTC
T ss_pred eEEEEech-hhHHHHHHHHHHHhC
Confidence 99999999 999999999998864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=185.03 Aligned_cols=157 Identities=20% Similarity=0.304 Sum_probs=123.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|++|+|||||++++..+.+ ..+.++.+........ ....+.+||+||++++...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEE----TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999887776 4567777755443333 3488999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|++++++++.+..|+..+... ..+.|+++|+||+|+.+.....+..+... ..+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 999999999999998888888765 36899999999999976543333333222 12457999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
++++.+.+.
T Consensus 171 ~~~l~~~~~ 179 (183)
T 1moz_A 171 LDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=187.59 Aligned_cols=160 Identities=19% Similarity=0.343 Sum_probs=121.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC--CcccccccceeEEEEEEEEEe---cCcEEEEEEEeCCCcccccCcchhhccCCC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 87 (173)
++||+++|++|+|||||++++... .+...+.+|.|.+........ ++..+.+.+||++|++++..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999998864 445556778777766555433 235678999999999999999999999999
Q ss_pred EEEEEEECCCh-hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc-----HHHHHHHHHcCCc----EEEEccCCC
Q 030693 88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-----AKQVTFHRKKNLQ----YYEISAKSN 157 (173)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~----~~~~S~~~~ 157 (173)
++++|||++++ .++..+..|+..+....++.|+++|+||+|+.+.... .....++...+++ ++++||+++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999997 5899999999998877678999999999999764322 1123455556776 999999999
Q ss_pred C-ChHHHHHHHHHHhh
Q 030693 158 Y-NFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~-~i~~~~~~i~~~i~ 172 (173)
. ++.++++.+.+.+.
T Consensus 162 ~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 162 SDALAKLRKTIINESL 177 (184)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHh
Confidence 7 99999999988764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-32 Score=183.42 Aligned_cols=157 Identities=20% Similarity=0.287 Sum_probs=126.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||++++..+.+.. +.+|.+........ ..+.+.+|||||++++...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQY----KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEEE----TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEEE----CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999987776653 56676654443333 4688999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHH-----HHHcCCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|+++++++..+..|+..+... .++.|+++|+||+|+.+.....+..+. +...+++++++||+++.|++++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 999999999999888888777654 258999999999999765332222221 1233567999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
++++.+.+.
T Consensus 175 ~~~l~~~i~ 183 (189)
T 2x77_A 175 MDWLVERLR 183 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8e-31 Score=192.49 Aligned_cols=161 Identities=25% Similarity=0.454 Sum_probs=138.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|.+|+|||||++++..+.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999998888777777776544 3455667788899999999999999999999999999999
Q ss_pred EEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcCC-cEEEEccC
Q 030693 92 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISAK 155 (173)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~S~~ 155 (173)
|||++++.++..+. .|+..+....++.|+++|+||+|+.+. .. ..+...++...++ +++++||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 99999999999987 688888887779999999999998642 12 2334567788887 89999999
Q ss_pred CCCChHHHHHHHHHHhhC
Q 030693 156 SNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i~~ 173 (173)
+|.|++++|+++.+.+++
T Consensus 313 ~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 999999999999998764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-34 Score=197.25 Aligned_cols=161 Identities=27% Similarity=0.476 Sum_probs=133.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++.+... ......++..+.+.+||+||++++...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999988887766666665433 334455667788999999999999999999999999999
Q ss_pred EEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcCC-cEEEEcc
Q 030693 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S~ 154 (173)
+|+|++++.+++.+. .|+..+....++.|+++|+||+|+.+.. . ..+...++...++ +++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 999999999999987 7888887776789999999999997532 1 2233456666776 8999999
Q ss_pred CCCCChHHHHHHHHHHhh
Q 030693 155 KSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~ 172 (173)
++|.|++++|+++.+.++
T Consensus 187 ~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAVL 204 (204)
Confidence 999999999999988764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=175.57 Aligned_cols=161 Identities=34% Similarity=0.587 Sum_probs=137.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.++..+..+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46899999999999999999999888877778888877777778888888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.. . ..+...++...++.++++|++++.|+.++++++.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888888776653 478999999999997632 2 2345678888899999999999999999999998
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 164 ~~~~ 167 (199)
T 2f9l_A 164 TEIY 167 (199)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=172.55 Aligned_cols=161 Identities=32% Similarity=0.568 Sum_probs=140.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..++|+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|.+++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 45899999999999999999999888887888899888887788888888899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+|.++..+++.+..|+..+.... .+.|+++++||+|+.+. .. ......++...++.++++|++++.|+.++|+++.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888888776643 47899999999999763 22 3345678888899999999999999999999999
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.+.
T Consensus 188 ~~i~ 191 (191)
T 1oix_A 188 TEIY 191 (191)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8763
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=189.78 Aligned_cols=157 Identities=23% Similarity=0.312 Sum_probs=120.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+... .+|.+....... ...+.+.+|||||++.+..++..+++.+|+++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEE----ETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEe----cCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999887776543 356555544332 35689999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHHHHHH-----HcCCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|||++++.++..+..|+..+.... +++|+++|+||+|+.+.....+...... ..+++++++||++|.|++++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence 9999999999999888776665432 5899999999999987543333332221 23457999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|++|.+.+.
T Consensus 318 ~~~l~~~l~ 326 (329)
T 3o47_A 318 LDWLSNQLR 326 (329)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=171.23 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=113.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------cchhhcc-
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI- 84 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~- 84 (173)
++++|+++|++|+|||||++++.+..+.....++.+.+.....+..+ ...+.+|||||++++.. +...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 46899999999999999999988766543333332222222233333 36899999999988753 3355665
Q ss_pred -CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 85 -HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 85 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
+++++++|+|+++.+. ...|+..+.+. +.|+++|+||+|+... ....+..+++...+++++++||++|.|+++
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE 154 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHhc--CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 8999999999998653 34466666553 8999999999998653 233345677778889999999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|+++.+.+-
T Consensus 155 l~~~l~~~~~ 164 (165)
T 2wji_A 155 LKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-31 Score=187.87 Aligned_cols=165 Identities=21% Similarity=0.256 Sum_probs=122.6
Q ss_pred CCCCCeeEEEEEcCC---------CCCHHHHHHHHhh---CCcccccccce-eEEEEEEE--------------EEecCc
Q 030693 8 TVDYPSFKLVIVGDG---------GTGKTTFVKRHLT---GEFEKKYEPTI-GVEVHPLD--------------FFTNCG 60 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~ 60 (173)
......+||+++|.+ |+|||||+++|.. +.+...+.++. +.++.... ...++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 344567999999999 9999999999987 44544444443 22221111 113456
Q ss_pred EEEEEEEe-----------------------CCCcccccCcchhhcc---------------------CCCEEEEEEECC
Q 030693 61 KIRFYCWD-----------------------TAGQEKFGGLRDGYYI---------------------HGQCAIIMFDVT 96 (173)
Q Consensus 61 ~~~~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~ 96 (173)
.+.+.+|| ++|++++..++..+++ ++|++++|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 6778888888888887 799999999999
Q ss_pred Ch--hhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHH-cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 97 AR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 97 ~~--~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
++ ++++.+..|+..+... .++.|+++|+||+|+.+.....+..+++.. .+++++++||++|.|++++|++|.+.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 98 8999999999988765 368999999999999764333445566665 488999999999999999999999876
Q ss_pred h
Q 030693 172 A 172 (173)
Q Consensus 172 ~ 172 (173)
.
T Consensus 254 ~ 254 (255)
T 3c5h_A 254 D 254 (255)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=176.34 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=113.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCc-EEEEEEEeCCCcccccC-cchhhccCCCE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQC 88 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ 88 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.++. .+... +..++. .+.+.+|||||++++.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 457999999999999999999999888776655433 33333 444443 68999999999999987 78889999999
Q ss_pred EEEEEECCChh-hhhcHHH-HHHHHhhh---cCCCCEEEEEeCCCCccccccHHHHH----HHH----------------
Q 030693 89 AIIMFDVTARL-TYKNVPT-WHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVT----FHR---------------- 143 (173)
Q Consensus 89 ~i~v~d~~~~~-s~~~~~~-~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~---------------- 143 (173)
+++|+|+++.. ++..... |...+... .++.|+++|+||+|+.+........+ ...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555554 44443331 24789999999999976432221111 100
Q ss_pred -----------------Hc--CCcEEEEccCCC------CChHHHHHHHHHHh
Q 030693 144 -----------------KK--NLQYYEISAKSN------YNFEKPFLYLARKL 171 (173)
Q Consensus 144 -----------------~~--~~~~~~~S~~~~------~~i~~~~~~i~~~i 171 (173)
.. ++.|+++||++| .|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 667999999999 99999999998753
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=169.00 Aligned_cols=157 Identities=16% Similarity=0.148 Sum_probs=114.8
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
...+.++|+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++ ..+.+|||||++++...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 345679999999999999999999988877665555544444444444443 467899999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHc-------C--CcEEEEccCCCCC
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-------N--LQYYEISAKSNYN 159 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~--~~~~~~S~~~~~~ 159 (173)
+++|+|++++...... .++..+.. .+.|+++|+||+|+.+... .+........ + ++++++||++|.|
T Consensus 82 ~i~v~d~~~~~~~~~~-~~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV-EAINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEEEETTCCCCHHHH-HHHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEEEECCCCCcHHHH-HHHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999999884322211 22223322 3899999999999976421 1222222221 1 5799999999999
Q ss_pred hHHHHHHHHHHh
Q 030693 160 FEKPFLYLARKL 171 (173)
Q Consensus 160 i~~~~~~i~~~i 171 (173)
++++|++|.+.+
T Consensus 158 v~~l~~~l~~~~ 169 (178)
T 2lkc_A 158 LDHLLEMILLVS 169 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-29 Score=181.04 Aligned_cols=157 Identities=20% Similarity=0.285 Sum_probs=124.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcc---cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc-----cCcchhhc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~ 83 (173)
..+||+++|.+|+|||||+++++.+... ..+.+|.+....... .. ..+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~--~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR--FL-GNMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEE--ET-TTEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEE--eC-CceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999998876322 234556665554433 23 3689999999999988 78899999
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHH---HHhhhcCCCCEEEEEeCCCCcccc--------ccHHHHHHHHHcC---CcE
Q 030693 84 IHGQCAIIMFDVTARLTYKNVPTWHR---DLCRVCENIPIVLCGNKVDVKNRQ--------VKAKQVTFHRKKN---LQY 149 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~~~~~~~~~~~---~~~ 149 (173)
+++|++++|||++++++++.+..|.. .+....++.|+++|+||+|+.+.. ...+..+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999998876644 444456789999999999997621 1234457777776 799
Q ss_pred EEEccCCCCChHHHHHHHHHHhh
Q 030693 150 YEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 150 ~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+++||++ .++.++|..+.+.++
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 899999999887653
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=174.36 Aligned_cols=163 Identities=12% Similarity=0.084 Sum_probs=112.4
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc---------Cc
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GL 78 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~ 78 (173)
..+.+.++|+++|.+|+|||||+++|+.+.+... +..+.+..............+.+|||||+.... ..
T Consensus 24 ~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 24 SINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp SCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH
Confidence 3345679999999999999999999887765422 222222222222222234789999999983211 11
Q ss_pred chhhccCCCEEEEEEECCChhhhhcH--HHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccH----HHHHHHHHcC--CcE
Q 030693 79 RDGYYIHGQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA----KQVTFHRKKN--LQY 149 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~----~~~~~~~~~~--~~~ 149 (173)
...++..+|++++|+|++++.++... ..|+..+....++.|+++|+||+|+.+.. ... ....++...+ +++
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 23456788999999999998876522 34566665544589999999999997632 222 2335666666 899
Q ss_pred EEEccCCCCChHHHHHHHHHHhh
Q 030693 150 YEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 150 ~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+++||++|.|++++|++|.+.+.
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-30 Score=185.93 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=114.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCccc---ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---cchhhccCCCE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQC 88 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~~~ 88 (173)
||+++|..|+|||||++++..+..+. ...+|.|.+...+ +..+.+++|||+|+++|+. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-----~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-----STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-----CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-----ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999866443322 2456777666532 2458999999999999974 46889999999
Q ss_pred EEEEEECCCh--hhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--------ccHH-HHHHHHH----cCCcEEEEc
Q 030693 89 AIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKAK-QVTFHRK----KNLQYYEIS 153 (173)
Q Consensus 89 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~~-~~~~~~~----~~~~~~~~S 153 (173)
+++|||++++ ++.+.+..|+..+.+..++.|+++++||+|+.... +..+ ..++++. .++.|+++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 9999999998 33334444455555566899999999999997532 2222 2244553 578999999
Q ss_pred cCCCCChHHHHHHHHHHhh
Q 030693 154 AKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~ 172 (173)
|++ .++.++|..+++.++
T Consensus 156 Akd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSS
T ss_pred cCC-CcHHHHHHHHHHHHH
Confidence 998 699999999988764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=167.29 Aligned_cols=156 Identities=16% Similarity=0.191 Sum_probs=118.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------cchhhc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY 83 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~ 83 (173)
+++.++|+++|++|+|||||+++|....+.....++.+.+.....+.. ....+.+|||||++.+.. ++..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY--NGEKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe--CCcEEEEEECCCcCccccccHHHHHHHHHH
Confidence 456899999999999999999998876654444444433443333433 347899999999988753 455566
Q ss_pred c--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 84 I--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 84 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
. .++++++|+|.++. +....|+..+.. .+.|+++|+||+|+... .......+++...+++++++||+++.|+
T Consensus 82 ~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 82 INEKPDLVVNIVDATAL---ERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HHHCCSEEEEEEEGGGH---HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred hccCCCEEEEEecchhH---HHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCH
Confidence 4 49999999998764 444566666655 38899999999998753 3334456778888999999999999999
Q ss_pred HHHHHHHHHHhh
Q 030693 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
.++|+++.+.+.
T Consensus 157 ~~l~~~i~~~~~ 168 (188)
T 2wjg_A 157 EELKKAISIAVK 168 (188)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=174.47 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=118.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc------hhhc-
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY- 83 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~------~~~~- 83 (173)
.+.++|+++|.+|+|||||+++|.+..+.....+ |++.......+......+.+|||||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~p--g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWP--GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECT--TSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4579999999999999999999887665433333 444444444444445799999999998877643 5565
Q ss_pred -cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 84 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+.+. ....+...++...+++++++||++|.|++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence 5899999999999876432 355555554 8999999999998753 33334567888889999999999999999
Q ss_pred HHHHHHHHHh
Q 030693 162 KPFLYLARKL 171 (173)
Q Consensus 162 ~~~~~i~~~i 171 (173)
++|+++.+.+
T Consensus 156 el~~~i~~~~ 165 (258)
T 3a1s_A 156 ELKEKIVEYA 165 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=166.96 Aligned_cols=156 Identities=13% Similarity=0.175 Sum_probs=108.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC----------cccccCcch
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLRD 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~ 80 (173)
...++|+++|.+|+|||||+++|+.+.+...+.++.+.+........+. .+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4579999999999999999999988876666667777666555444433 589999999 666777777
Q ss_pred hhccCC---CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-HH----HHHHcCCcEEEE
Q 030693 81 GYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VT----FHRKKNLQYYEI 152 (173)
Q Consensus 81 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~----~~~~~~~~~~~~ 152 (173)
.+++.+ |++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+....... .+ +....+.+++++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEE
Confidence 787777 9999999999876655432 2233333 48899999999999764432221 22 222346789999
Q ss_pred ccCCCCChHHHHHHHHHHhh
Q 030693 153 SAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i~ 172 (173)
||++|.|++++|+++.+.+-
T Consensus 175 Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 175 SSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred EccCCCCHHHHHHHHHHHhc
Confidence 99999999999999998764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=161.94 Aligned_cols=149 Identities=21% Similarity=0.176 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEE--EEEEEEecCcEEEEEEEeCCCcccc-------cCcchhhcc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYI 84 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~ 84 (173)
.||+++|.+|+|||||++++..+.... ..+..+.+. .......+ ...+.+||+||++.+ ...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee-ccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 589999999999999999988776431 122222332 22233333 347899999998873 334556788
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHH
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 163 (173)
.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. .+..+++ ..++ +++++||++|.|++++
T Consensus 79 ~~~~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD-YEVAEYLRR--KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEEL 152 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH-HHHHHHHHH--HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHH
T ss_pred hCCEEEEEEECCCcccHhH-HHHHHHHHh--cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHH
Confidence 9999999999998633221 122222222 388999999999997652 2233444 5666 8999999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
|+++.+.+
T Consensus 153 ~~~l~~~l 160 (161)
T 2dyk_A 153 LEAIWERL 160 (161)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998865
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-29 Score=192.50 Aligned_cols=161 Identities=21% Similarity=0.294 Sum_probs=119.9
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEE--------EecCcEEEEEEEeCCCcccccCcch
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--------FTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
.+...+||+++|.+|+|||||++++..+.+...+.+|.|.+...... ..++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 35678999999999999999999999888877777888777664321 2223468999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCC
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~ 158 (173)
.+++++|++++|+|+++. +....|+..+....++.|+++|+||+|+.+... ..+..+.+...+++++++||++|.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999999998765 566788888888877899999999999976332 233456677788899999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030693 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++++++.+.+.
T Consensus 194 gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 194 GVESIAKSLKSAVL 207 (535)
T ss_dssp -CTTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-28 Score=175.13 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=123.1
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCc-EEEEEEEeCCCccccc----------
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG---------- 76 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~---------- 76 (173)
..+++.-.|+++|.+|+|||||+|+|++..+.. ..+..+++........... ...+.+|||||+..+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i-~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI-ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccc-cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 345667899999999999999999988776542 2444445554444433334 7889999999987654
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc-cccccHH-HHHHHHHcC--CcEEEE
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKN--LQYYEI 152 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~-~~~~~~~~~--~~~~~~ 152 (173)
..+..+++.+|++++|+|++++.+......|+..+... +.|+++|+||+|+. +.....+ ...+....+ .+++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v 161 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI 161 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 45567788999999999999987777776677777764 89999999999997 4443333 345556654 789999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030693 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|.|++++++++.+.+
T Consensus 162 SA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 162 SALKGANLDELVKTILKYL 180 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHhC
Confidence 9999999999999998865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-28 Score=164.37 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=107.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 82 (173)
+..||+++|.+|+|||||++++....... ...+....+.....+..++ ..+.+|||||++++... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999987665321 1112212222233344443 46899999998764321 1235
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
++.+|++++|+|++++.++. ...|+..+.... .++|+++|+||+|+.+... .++...+.+++++||++|.|++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv~ 154 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGVD 154 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTHH
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCHH
Confidence 78999999999999988876 346667666553 4799999999999864321 1122346789999999999999
Q ss_pred HHHHHHHHHh
Q 030693 162 KPFLYLARKL 171 (173)
Q Consensus 162 ~~~~~i~~~i 171 (173)
++|++|.+.+
T Consensus 155 ~l~~~l~~~~ 164 (172)
T 2gj8_A 155 VLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=160.95 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=111.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC----------cccccCcc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~ 79 (173)
....+||+++|.+|+|||||+++++.+. .....++.+.+........+ ..+.+||||| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHHH
Confidence 3456899999999999999999988776 33445666655544433332 2477999999 55666677
Q ss_pred hhhccCC---CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----HHHHHHHH-cCCcEEE
Q 030693 80 DGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK-KNLQYYE 151 (173)
Q Consensus 80 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~-~~~~~~~ 151 (173)
..+++.+ +++++|+|++++.+.... .+...+... +.|+++|+||+|+.+..... +..+++.. .++++++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 7777766 999999999875332221 122223232 78999999999997543222 22344444 3479999
Q ss_pred EccCCCCChHHHHHHHHHHhh
Q 030693 152 ISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+||++|.|++++|+++.+.+.
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHhh
Confidence 999999999999999998764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=166.60 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC-----------cccccCcchhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGY 82 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~ 82 (173)
+||+++|.+|+|||||++++..+.+...+.++. +......... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV--TRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC--TTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc--cceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999887765555533 3333333332 689999999 56666777777
Q ss_pred ccC-CCEEEEEEECCChhhhhcH-HHHHHH--------Hhhh--cCCCCEEEEEeCCCCccccccHHHHHHHHHcCCc--
Q 030693 83 YIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-- 148 (173)
Q Consensus 83 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 148 (173)
++. ++++++++++.+..++..+ ..|... +... ..+.|+++|+||+|+.+.. .....+++...+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence 776 7766677777767777665 345432 2111 2589999999999997754 33455677777764
Q ss_pred -----EEEEccCCCCChHHHHHHHHHHhh
Q 030693 149 -----YYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 149 -----~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++++||++|.|++++|+++.+.+.
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 799999999999999999998764
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-28 Score=170.45 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC----------cchhhc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY 83 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~ 83 (173)
.+|+++|.+|+|||||+++|.+........+....+.....+..+ +..+.+|||||+..+.. ++..++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG--EHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET--TEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC--CeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 489999999999999999988776543333333333333333333 34899999999987764 455666
Q ss_pred --cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 84 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.++|++++|+|+++.++...+.. .+... +.|+++|+||+|+.... .......+....+++++++||++|.|+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~---~l~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTS---QLFEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHH---HHTTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHH---HHHHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 88999999999998765544433 33333 88999999999987643 233345677788999999999999999
Q ss_pred HHHHHHHHH
Q 030693 161 EKPFLYLAR 169 (173)
Q Consensus 161 ~~~~~~i~~ 169 (173)
+++++++.+
T Consensus 155 ~el~~~i~~ 163 (256)
T 3iby_A 155 PALQQSLLH 163 (256)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999875
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=174.27 Aligned_cols=153 Identities=14% Similarity=0.142 Sum_probs=112.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc----------chh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDG 81 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------~~~ 81 (173)
++++|+++|.+|+|||||+|+|.+..+.....+ |++.......+......+.+|||||+..+... +..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~--g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECT--TSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCC--CeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 469999999999999999999887765333333 33443333333334467889999999877632 223
Q ss_pred hc--cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc-ccHHHHHHHHHcCCcEEEEccCCCC
Q 030693 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (173)
++ ..+|++++|+|+++.++...+. ..+... +.|+++|+||+|+.+.. .......++...+++++++||++|.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~---~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~ 154 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLT---LQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR 154 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHH---HHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHH---HHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 33 6899999999999876544433 344443 89999999999987633 2233456777889999999999999
Q ss_pred ChHHHHHHHHHHh
Q 030693 159 NFEKPFLYLARKL 171 (173)
Q Consensus 159 ~i~~~~~~i~~~i 171 (173)
|++++++++.+.+
T Consensus 155 gi~el~~~i~~~~ 167 (274)
T 3i8s_A 155 GIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987643
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-28 Score=171.76 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=116.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------cchhhcc--
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI-- 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~-- 84 (173)
.++|+++|++|+|||||+++|.+..... ....|++.......+.. ...+.+|||||+..+.. ++..++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v--~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV--GNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC--CSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc--cCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 5899999999999999999988665322 22345566555555555 67899999999988763 4566665
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
.+|++++|+|+++.++. ..|...+.+ .+.|+++|+||+|+... ....+...++...+++++++||++|.|++++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 59999999999987543 345555554 38999999999998653 3334456778888999999999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
|+++.+.+
T Consensus 155 ~~~i~~~~ 162 (272)
T 3b1v_A 155 VKKAAHTT 162 (272)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHH
Confidence 99998743
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=164.74 Aligned_cols=159 Identities=17% Similarity=0.051 Sum_probs=111.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcc----------cccCcc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQE----------KFGGLR 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~----------~~~~~~ 79 (173)
...++|+++|.+|+|||||+++|+.+........+.+++......... .....+.+|||||.. .+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 456899999999999999999988776333334455555544444443 455789999999953 334455
Q ss_pred hhhccC---CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----HHHHHHHH-------c
Q 030693 80 DGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK-------K 145 (173)
Q Consensus 80 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~-------~ 145 (173)
..++.. +|++++|+|++++.+. ....++..+.. .+.|+++|+||+|+.+..... ...+.... .
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAG 183 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCC
Confidence 556655 7889999999875331 22345555555 388999999999997643321 11222222 5
Q ss_pred CCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 146 NLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 146 ~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
+.+++++||++|.|+.+++++|.+.+.
T Consensus 184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 184 KLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp CEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred CCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 678999999999999999999988763
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=165.14 Aligned_cols=154 Identities=17% Similarity=0.115 Sum_probs=114.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC------cchhhc--
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY-- 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~-- 83 (173)
+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.. ....+.+|||||+..+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY--REKEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE--TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE--CCceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4689999999999999999998877664444444444444334433 345699999999988776 456666
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-cccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
.++|++++|+|+++.+. ...|...+... ...|+++|+||+|+.+. ........+....+++++++||++|.|+.+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE 155 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence 68999999999998642 22334444443 13999999999998753 233345677788899999999999999999
Q ss_pred HHHHHHHHh
Q 030693 163 PFLYLARKL 171 (173)
Q Consensus 163 ~~~~i~~~i 171 (173)
+++++.+.+
T Consensus 156 l~~~i~~~~ 164 (271)
T 3k53_A 156 LKRMIALMA 164 (271)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=167.62 Aligned_cols=156 Identities=19% Similarity=0.132 Sum_probs=109.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc--------cCcchhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~ 82 (173)
.+..+|+++|.+|+|||||+|+|++...... .+..+++..............+.+|||||+... ......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~iv-s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeee-cCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4567899999999999999999887765321 222233333333223335678999999998763 3345567
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHH-HHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHH--cCCcEEEEccCCCCC
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK--KNLQYYEISAKSNYN 159 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~ 159 (173)
++.+|++++|+|++++.+.. ..| +..+....++.|+++|+||+|+.+.... ..+.... ...+++++||++|.|
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~g 159 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHELLPEAEPRMLSALDERQ 159 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHTSTTSEEEECCTTCHHH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHhcCcCcEEEEeCCCCCC
Confidence 89999999999998764332 333 3455554458999999999999754320 1222222 235689999999999
Q ss_pred hHHHHHHHHHHh
Q 030693 160 FEKPFLYLARKL 171 (173)
Q Consensus 160 i~~~~~~i~~~i 171 (173)
++++++++.+.+
T Consensus 160 v~~l~~~l~~~l 171 (301)
T 1wf3_A 160 VAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=173.96 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=97.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc--------hhhcc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYI 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~~ 84 (173)
.++|+++|.+|+|||||+|+|+..... ......+++.......+...++.+.+|||||++.+...+ ..+++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a-~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERA-IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 488999999999999999997765421 123334445444333333345789999999987765433 44688
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
.+|++++|+|++++.+++.+..+...+.. ..+.|+++|+||+|+.+..... ...+......+++++||++|.|+++++
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~-~~~l~~~~~~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADAL-IRAIADGTGTEVIGISALNGDGIDTLK 389 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHH-HHHHHHHHTSCEEECBTTTTBSHHHHH
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchh-HHHHHhcCCCceEEEEECCCCCHHHHH
Confidence 99999999999998887654444333332 3489999999999997654322 223343334789999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 390 ~~i~~~~~ 397 (476)
T 3gee_A 390 QHMGDLVK 397 (476)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHh
Confidence 99988653
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-27 Score=163.59 Aligned_cols=140 Identities=17% Similarity=0.180 Sum_probs=99.5
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccc---cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccC-
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH- 85 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~- 85 (173)
..+.++|+++|++|+|||||+++|..+.+... +.++.+.+ .....+.+||+||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45679999999999999999999988776442 22222211 145678999999999999888888887
Q ss_pred ---CCEEEEEEECC-ChhhhhcHHHHHHHHhhh-----cCCCCEEEEEeCCCCcccccc--------HHHHHHHHHcCCc
Q 030693 86 ---GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNLQ 148 (173)
Q Consensus 86 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~~~ 148 (173)
+|++++|+|++ +++++.....|+..+... .++.|+++|+||+|+...... .+...++...++.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888887777653 258999999999999764331 2223444444455
Q ss_pred EEEEccCCCC
Q 030693 149 YYEISAKSNY 158 (173)
Q Consensus 149 ~~~~S~~~~~ 158 (173)
++++|++++.
T Consensus 160 ~~~~Sa~~~~ 169 (218)
T 1nrj_B 160 LNEVERKINE 169 (218)
T ss_dssp HHC-------
T ss_pred cccccccccc
Confidence 5556655544
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=174.27 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=111.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEE--EEEEecCcEEEEEEEeCCCcccccCc-------ch
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGL-------RD 80 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~-------~~ 80 (173)
....++|+++|..|+|||||+++|+...+... ....+++... ..+...+. ..+.+|||||++.+... +.
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 34579999999999999999999876654221 2233333332 33333332 38999999999887665 34
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCCh
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 160 (173)
.++..+|++++|+|++..+ ....|+..+.+. +.|+++|+||+|+.+........+++..++++++++||++|.|+
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI 183 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGF 183 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 4788999999999994332 234566666665 89999999999998766555555666777899999999999999
Q ss_pred HHHHHHHHHHh
Q 030693 161 EKPFLYLARKL 171 (173)
Q Consensus 161 ~~~~~~i~~~i 171 (173)
+++|++|.+.+
T Consensus 184 ~eL~~~L~~~l 194 (423)
T 3qq5_A 184 DDIGKTISEIL 194 (423)
T ss_dssp TTHHHHHHHHS
T ss_pred HHHHHHHHHhh
Confidence 99999999876
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-25 Score=161.99 Aligned_cols=157 Identities=21% Similarity=0.201 Sum_probs=115.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccc--cceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---------cc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LR 79 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~ 79 (173)
...++|+++|.+|+|||||++++.+........ .+.+... .........+.+|||||...... ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINV----GQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEE----EEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeE----EEEEecCceEEEEeCCCccccchhhhhHHHHHHH
Confidence 456899999999999999999987665322111 1222221 12222356899999999754321 11
Q ss_pred hhhccCCCEEEEEEECCChh--hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCC
Q 030693 80 DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 157 (173)
..+...+|++++|+|++++. ++.....|+..+....++.|+++|+||+|+.......+..+++...+++++++||++|
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence 13445699999999999876 5666677888887765589999999999998754334455666678899999999999
Q ss_pred CChHHHHHHHHHHh
Q 030693 158 YNFEKPFLYLARKL 171 (173)
Q Consensus 158 ~~i~~~~~~i~~~i 171 (173)
+|++++++++.+.+
T Consensus 321 ~gi~~l~~~i~~~l 334 (357)
T 2e87_A 321 TGIDLVKEEIIKTL 334 (357)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998865
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-25 Score=160.93 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=93.0
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCC----------hhhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..+.+++||++|+++++..|..++++++++|+|+|+++ ..++.....|+..+... .+++|+++++||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46889999999999999999999999999999999998 45677777787777653 3689999999999
Q ss_pred CCcccc-----------------ccHHHHHHHH-----------HcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 128 DVKNRQ-----------------VKAKQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~-----------------~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+.... ...+...++. ..++.++++||+++.|+.++|+++.+.++
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 985321 2234445554 35678999999999999999999998764
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=162.88 Aligned_cols=161 Identities=17% Similarity=0.088 Sum_probs=112.9
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEE---------EE-------Ee---cCcEEEEEEEeC
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL---------DF-------FT---NCGKIRFYCWDT 69 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~---------~~-------~~---~~~~~~~~~~D~ 69 (173)
...+.++|+++|.+++|||||+++|........ ......+.... .. .. ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 445679999999999999999999775432211 11111110000 00 00 112378999999
Q ss_pred CCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH----HHHHHH-
Q 030693 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHRK- 144 (173)
Q Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~- 144 (173)
||++.|...+..++..+|++++|+|++++.+......++..+... ...|+++|+||+|+.+.....+. .++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999876556666666655544 24589999999999764322222 122222
Q ss_pred --cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 145 --KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 145 --~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+++++++||++|.|+++++++|.+.+
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 257899999999999999999998754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-25 Score=169.83 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=106.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc----------cccCcch
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLRD 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~ 80 (173)
...+||+++|.+|+|||||++++++..... ..+..+++.......+...+..+.+|||||+. .|...+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~-~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE-EC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCcee-ecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 356999999999999999999988765421 12233444443322222233468999999983 3333322
Q ss_pred -hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc--HHHH-HHHH----HcCCcEEEE
Q 030693 81 -GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-TFHR----KKNLQYYEI 152 (173)
Q Consensus 81 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~-~~~~----~~~~~~~~~ 152 (173)
.+++.+|++++|+|++++.+.++. .|...+.. .+.|+++|+||+|+.+.... .+.. .+.. ..+++++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 477899999999999998777665 45555554 48999999999999764321 1221 2222 246899999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030693 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|.|+.++|+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-25 Score=166.81 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc---------cCcchhhcc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYI 84 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~ 84 (173)
.+|+++|.+|+|||||+|+|+++... ....+.|++...........+..+.+|||||.+.. +..+..+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc-eecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 37999999999999999998866532 23445566655443333223457899999997642 334566889
Q ss_pred CCCEEEEEEECCChhhhh--cHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-HHHHHHcCC-cEEEEccCCCCCh
Q 030693 85 HGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNF 160 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~-~~~~~S~~~~~~i 160 (173)
++|++++|+|++++.+.. .+..|+ ... ++|+++|+||+|+.+.. ..+. .+++ ..++ .++++||++|.|+
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l---~~~--~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFL---RKS--TVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHH---HHH--TCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHH---HHc--CCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCH
Confidence 999999999998754332 222232 222 88999999999986531 1222 3333 4565 7899999999999
Q ss_pred HHHHHHHHHHh
Q 030693 161 EKPFLYLARKL 171 (173)
Q Consensus 161 ~~~~~~i~~~i 171 (173)
.++++++.+.+
T Consensus 154 ~~L~~~i~~~l 164 (439)
T 1mky_A 154 DTMLETIIKKL 164 (439)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998765
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=170.13 Aligned_cols=152 Identities=20% Similarity=0.164 Sum_probs=105.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc-cccC--------cchhhc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGG--------LRDGYY 83 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~~~--------~~~~~~ 83 (173)
.++|+++|.+|+|||||+|+|....... .....+++.......+......+.+|||||.+ .+.. ....++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~-vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAI-VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCC-CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCc-cCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 3899999999999999999988764321 12222333332222222235679999999988 6543 234578
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
..+|++++|+|++++.+++... +++.+ .+.|+++|+||+|+.+.....+..+++ ..+.+++++||++|.|++++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL 395 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEKL 395 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHHH
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHHH
Confidence 8999999999999886655432 22222 488999999999997642222222332 24478999999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
+++|.+.+
T Consensus 396 ~~~l~~~~ 403 (482)
T 1xzp_A 396 EESIYRET 403 (482)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998864
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=168.67 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=110.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCC--ccc-----c------cccceeEEEEEEEEEe-----cCcEEEEEEEeCCCcc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEK-----K------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~ 73 (173)
+..+|+++|+.++|||||+++|+... ... . .....|.+.......+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35799999999999999999987521 110 0 0112344443222222 4456899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC---cEE
Q 030693 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (173)
.|...+..+++.+|++++|+|++++.+.+....|...... ++|+++|+||+|+.+........++....++ .++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 159 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV 159 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence 9999999999999999999999988777776666655432 8899999999999875433333455556665 489
Q ss_pred EEccCCCCChHHHHHHHHHHhh
Q 030693 151 EISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++||++|.|++++++++.+.+.
T Consensus 160 ~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 160 RCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp EECTTTCTTHHHHHHHHHHHSC
T ss_pred EeecccCCCchhHHHHHhhcCC
Confidence 9999999999999999988653
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=157.05 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=89.5
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECC----------ChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..+.+++||++|+++++..|.+|+++++++|+|+|++ +..++.....|+..+... ..++|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 5689999999999999999999999999999999765 556666666777766543 3689999999999
Q ss_pred CCcccc------------------ccHHHHHHH----------HHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 128 DVKNRQ------------------VKAKQVTFH----------RKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~------------------~~~~~~~~~----------~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+..+. ..++..++. ...++.++++||+++.|++++|+.+.+.++
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 986532 122333442 234567889999999999999999998775
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=160.12 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCccc-ccc-cceeEEEEEEEEEecCcEEEEEEEeCCCcc----cccCcchhhccC---
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEK-KYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----KFGGLRDGYYIH--- 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~--- 85 (173)
+|+++|.+|+|||||++++....... .+. .|...+.. .+..+ ....+.+|||||.. .+..+...|++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 68899999999999999977654321 111 12222221 22222 23579999999953 344566666554
Q ss_pred CCEEEEEEECCC---hhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHHHHHHHHHcC--CcEEEEccCCC
Q 030693 86 GQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN 157 (173)
Q Consensus 86 ~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~ 157 (173)
++++++|+|+++ +.+++.+..|...+..+. .++|+++|+||+|+.... +...++..... .+++++||+++
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCC
Confidence 999999999998 778888888888887764 489999999999997643 22344555555 68999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030693 158 YNFEKPFLYLARKLA 172 (173)
Q Consensus 158 ~~i~~~~~~i~~~i~ 172 (173)
.|+++++++|.+.+.
T Consensus 315 ~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 315 EGLRELLFEVANQLE 329 (342)
T ss_dssp STTHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-25 Score=169.15 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=99.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc--------cccCcchhhcc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYI 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~ 84 (173)
..+|+++|.+|+|||||+|+|++.... ....+.|++...........+..+.+|||||++ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 368999999999999999998765543 346677887776666666566789999999985 45666777899
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC-cEEEEccCCCCChHHH
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 163 (173)
++|++++|+|+.++.+..+. .+...+.. .++|+++|+||+|+..... +..++. ..++ .++++||++|.|+.++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~-~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE-EVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDL 155 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH-HHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHH
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHH
Confidence 99999999999886554321 22233333 4889999999999875421 111222 3344 7899999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
++++.+.+
T Consensus 156 ~~~i~~~l 163 (436)
T 2hjg_A 156 LDAVAEHF 163 (436)
T ss_dssp HHHHHHTG
T ss_pred HHHHHHhc
Confidence 99998765
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-24 Score=165.12 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=106.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC----------cccccCcch
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLRD 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~ 80 (173)
...+||+++|.+|+|||||+++++..... ...+..+++.......+......+.+||||| ++.+...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE-EECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcc-ccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 45699999999999999999998755421 2233334444432222222334899999999 566655544
Q ss_pred -hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc--HHHHHHHHHc-----CCcEEEE
Q 030693 81 -GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKK-----NLQYYEI 152 (173)
Q Consensus 81 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~-----~~~~~~~ 152 (173)
.+++.+|++++|+|++++.+.+. ..|...+.. .++|+++|+||+|+.+.... .+..+.+.+. .++++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 47789999999999987543222 344445544 48999999999999763322 2333444333 5889999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030693 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|.|++++|+++.+.+
T Consensus 349 SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 349 SALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp CTTTCTTGGGHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-24 Score=154.05 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=107.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc---------cccCcchh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDG 81 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~ 81 (173)
.+..+|+++|++|+|||||++++++..... ..+..+++.......+......+.+|||||+. .+......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i-~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI-TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEE-CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccc-cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 455789999999999999999988766432 12222333322222233345689999999987 34455667
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCC-cEEEEccCCCC
Q 030693 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNL-QYYEISAKSNY 158 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~-~~~~~S~~~~~ 158 (173)
+++.+|++++|+|+++ +.....++..... ..+.|+++++||+|+.. +... ....++....+. .++++||+++.
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 7899999999999976 2333333322222 13789999999999976 2222 223345555565 68999999999
Q ss_pred ChHHHHHHHHHHh
Q 030693 159 NFEKPFLYLARKL 171 (173)
Q Consensus 159 ~i~~~~~~i~~~i 171 (173)
|+.++++.+.+.+
T Consensus 161 ~v~~l~~~i~~~l 173 (301)
T 1ega_A 161 NVDTIAAIVRKHL 173 (301)
T ss_dssp THHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhC
Confidence 9999999987643
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-24 Score=165.42 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=112.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC--Ccccc-----c------ccceeEEEEE----EEEEe-cCcEEEEEEEeCCCcc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK-----Y------EPTIGVEVHP----LDFFT-NCGKIRFYCWDTAGQE 73 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~-----~------~~~~~~~~~~----~~~~~-~~~~~~~~~~D~~G~~ 73 (173)
+..+|+++|..++|||||+++|+.. ..... . ....|.+... ..+.. ++..+.+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3579999999999999999998752 21110 0 0112333221 11111 3456899999999999
Q ss_pred cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC---cEE
Q 030693 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (173)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (173)
.|...+..+++.+|++++|+|++++.+.+....|..... .++|+++|+||+|+..........++....++ .++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence 999888889999999999999999877777666655543 38999999999999875433333455555565 489
Q ss_pred EEccCCCCChHHHHHHHHHHhh
Q 030693 151 EISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
++||++|.|+.++++++.+.+.
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeecCCCchHHHHHHHHhcc
Confidence 9999999999999999988653
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-24 Score=151.43 Aligned_cols=162 Identities=10% Similarity=0.073 Sum_probs=100.2
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCC-cccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchh------
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG------ 81 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~------ 81 (173)
...+.++|+++|.+|+|||||++++++.. +.....++ +++..............+.+|||||+..+......
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34567999999999999999999988766 33322222 12222222222224467999999998765433222
Q ss_pred -----hccCCCEEEEEEECCChhh-hhcHHHHHHHHhhhcCCCCEEEEEe-CCCCccccccH--------HHHHHHHHcC
Q 030693 82 -----YYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKKN 146 (173)
Q Consensus 82 -----~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~--------~~~~~~~~~~ 146 (173)
+++.+|++++|+|++.... ...+..++..+.......|.++++| |+|+....... +...+....+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence 5688999999999986221 1122223333221111457777776 99997542211 1223444444
Q ss_pred Cc---E--EEEccCCCCChHHHHHHHHHHh
Q 030693 147 LQ---Y--YEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 147 ~~---~--~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.. + +++||+++.|+.++|+++.+.+
T Consensus 177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 177 GRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 32 2 7899999999999999998765
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-24 Score=157.17 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=89.1
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECC----------ChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..+.+++|||+|+++++..|..++++++++|+|||++ +..+++....|+..+... .+++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 778888888888887653 3689999999999
Q ss_pred CCccccc-----------------------cHHHHHHHHH----------------cCCcEEEEccCCCCChHHHHHHHH
Q 030693 128 DVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 128 Dl~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+..+.. .++...++.. ..+.++++||+++.|++++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854211 1223344222 123468999999999999999998
Q ss_pred HHhh
Q 030693 169 RKLA 172 (173)
Q Consensus 169 ~~i~ 172 (173)
+.++
T Consensus 341 ~~I~ 344 (354)
T 2xtz_A 341 ETLR 344 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-23 Score=154.97 Aligned_cols=160 Identities=15% Similarity=0.086 Sum_probs=100.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC---Cccccccc--ceeEEEEEEEEEe-------------c--C----cEEEEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFYC 66 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~~ 66 (173)
.+.++|+++|..++|||||+++|.+. .+.....+ |....+....... + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45799999999999999999997632 22222222 4433333322211 1 1 1378999
Q ss_pred EeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHHH
Q 030693 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFH 142 (173)
Q Consensus 67 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~ 142 (173)
||+||++.|...+...+..+|++++|+|++++.........+..+.. ....|+++++||+|+.+... .++..+++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l 164 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV 164 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 99999999887777778889999999999964211111122222222 22458999999999976432 12233444
Q ss_pred HH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 143 RK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 143 ~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.. .+++++++||++|+|+++++++|.+.+
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 43 367899999999999999999998754
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-24 Score=162.67 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=100.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCC--cccc---------------------------cccceeEEEEEEEEEecCcE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (173)
.+.+||+++|.+++|||||+++|+... +... .....|++.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 356999999999999999999987541 1110 01112444444444455567
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhc-----HHHHHHHHhhhcCCCCEEEEEeCCCCccc--cc
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----VPTWHRDLCRVCENIPIVLCGNKVDVKNR--QV 134 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~ 134 (173)
+.+.+|||||+++|...+..++..+|++++|+|++++.+... ...+...+.......|+++|+||+|+.+. ..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 889999999999999999999999999999999998754322 12222233333334569999999999762 11
Q ss_pred cHH----HHHHHHHc-----CCcEEEEccCCCCChHH
Q 030693 135 KAK----QVTFHRKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 135 ~~~----~~~~~~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
.++ ...+.... +++++++||++|.|+.+
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 111 22233322 46799999999999975
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-24 Score=165.71 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=96.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEE--EEEEecCcEEEEEEEeCCCcccccCc--------chhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 82 (173)
.++|+++|.+|+|||||+|+|+....... ....+++... ..+.. .+..+.+|||||...+... ...+
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~--~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIV-TDLPGTTRDVVESQLVV--GGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCC-SCCTTCCHHHHHHEEEE--TTEEEEECC--------------------CC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCeeEEEEEEEEEE--CCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 47899999999999999999886543211 1112222222 22333 3467899999998665433 2336
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
+..+|++++|+|++++.+... ..++..+ .+.|+++|+||+|+...........+. ...+++++||++|.|+++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHHH
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHHH
Confidence 788999999999998755433 3343333 357999999999997644322111111 357899999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
++++|.+.+.
T Consensus 374 L~~~i~~~~~ 383 (462)
T 3geh_A 374 LETAILEIVQ 383 (462)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988763
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=160.32 Aligned_cols=159 Identities=19% Similarity=0.146 Sum_probs=107.4
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCC----ccc-ccccceeEEEEE--EEEEecCcEEEEEEEeCCCcccccCcch
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE----FEK-KYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~----~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 80 (173)
...++.++|+++|..++|||||+++|.... ... ......|++... ..+.. ....+.+|||||++.|...+.
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~iiDtPGh~~~~~~~~ 91 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAVV 91 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE--CCEEEEEEECCChHHHHHHHH
Confidence 344568999999999999999999987654 110 001111222221 12222 347899999999999988888
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc----HHHHHHHHHc----CCcEEEE
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEI 152 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~----~~~~~~~ 152 (173)
.++..+|++++|+|+++...-+. ...+..+.. .++|+++++||+|+.+.... .+..+++... +.+++++
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQT-GEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHH-HHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred HHHhhCCEEEEEEecCCCccHHH-HHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 89999999999999987421111 122223333 27899999999999763221 2223444444 5789999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030693 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|+|+.+++++|.+.+
T Consensus 169 SA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhh
Confidence 9999999999999998754
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-25 Score=171.63 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=109.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+..+|+++|.+++|||||+++|....+.....++.+.+.....+..+ ....+.+|||||++.|..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 45789999999999999999988765544333333222222222221 23478999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHH------Hc--CCcEEEEccCCCCChHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR------KK--NLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~--~~~~~~~S~~~~~~i~~~ 163 (173)
|+|++++...+.... +..+.. .++|+++++||+|+.+.........+.. .+ .++++++||++|.|++++
T Consensus 82 VVDa~dg~~~qt~e~-l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 82 VVAADDGVMKQTVES-IQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp ECBSSSCCCHHHHHH-HHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEECCCCccHHHHHH-HHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 999998654433322 223332 3889999999999975332211111111 11 357899999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
++++...+
T Consensus 159 le~I~~l~ 166 (537)
T 3izy_P 159 AEATIALA 166 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998753
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=147.04 Aligned_cols=161 Identities=9% Similarity=0.009 Sum_probs=101.7
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc-----------cccC
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----------KFGG 77 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----------~~~~ 77 (173)
.....+||+++|.+|+|||||++++++........+..+++..............+.+|||||.. .+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34567999999999999999999988877655444433334333333332344688999999943 2333
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh---cCCCCEEEEEeCCCCcccccc--------HHHHHHHHHcC
Q 030693 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN 146 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~ 146 (173)
....+++.+|++++|+|++.... ....++..+... ....|+++|+||+|+...... .....+....+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 34445667899999999875432 112233333221 125699999999998653221 24556777888
Q ss_pred CcEEEEccCCC-----CChHHHHHHHHHHh
Q 030693 147 LQYYEISAKSN-----YNFEKPFLYLARKL 171 (173)
Q Consensus 147 ~~~~~~S~~~~-----~~i~~~~~~i~~~i 171 (173)
..++.++...+ .++.++++.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 88888887754 68999998877654
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=162.37 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=84.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC------------------Cccccc--ccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG------------------EFEKKY--EPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
+..+|+++|.+|+|||||+++|+.. ...... ....|.+.......+....+.+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 4579999999999999999998611 010000 00123333333333334568899999999
Q ss_pred cccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030693 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
+..+...+..+++.+|++++|+|++++.+.+....| ..+... ++|+++|+||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 999999999999999999999999987665554444 333333 8999999999999653
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=152.33 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=84.9
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCC----------hhhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..+.+++||++|+++++..|..++++++++|+|+|+++ ..++.....|+..+... ..++|+++++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 35889999999999999999999999999999999998 67888888888887653 3689999999999
Q ss_pred CCcccc-----------------c-cHHHHHHH--------H---HcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 128 DVKNRQ-----------------V-KAKQVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 128 Dl~~~~-----------------~-~~~~~~~~--------~---~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
|+.... . ..+...++ . ..++.++++||+++.|++++|+++.+.++
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 986421 1 22333433 1 34577899999999999999999988764
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-24 Score=154.59 Aligned_cols=113 Identities=13% Similarity=0.185 Sum_probs=90.1
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECC----------ChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (173)
..+.+++||++|+++++..|..|+++++++|+|+|++ +..++.....|+..+... ..++|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 677788777777777653 3689999999999
Q ss_pred CCccccc-----------------cHHHHHHHH-H--------------------------cCCcEEEEccCCCCChHHH
Q 030693 128 DVKNRQV-----------------KAKQVTFHR-K--------------------------KNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 128 Dl~~~~~-----------------~~~~~~~~~-~--------------------------~~~~~~~~S~~~~~~i~~~ 163 (173)
|+..+.. .++...++. + ..+.++++||++..+++.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 9864211 122222221 1 2366889999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+.+.+.++
T Consensus 319 F~~v~~~Il 327 (340)
T 4fid_A 319 FMLAVDVIM 327 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998775
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=155.54 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=104.9
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCC--cccc---------------------------cccceeEEEEEEEEEecC
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YEPTIGVEVHPLDFFTNC 59 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~ 59 (173)
.....++|+++|.+++|||||+++|+... .... .....|++.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34567999999999999999999985421 1100 011134455444444455
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhh---hh---cHHHHHHHHhhhcCCCC-EEEEEeCCCCccc
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 132 (173)
....+.+|||||+++|...+..++..+|++++|+|+++... +. .....+..+.. .++| +++++||+|+...
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence 66799999999999999999999999999999999998632 21 11122222222 2677 9999999999642
Q ss_pred cc--------cHHHHHHHHHcC------CcEEEEccCCCCChHHHHH
Q 030693 133 QV--------KAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 133 ~~--------~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~~ 165 (173)
.. ..+...++...+ ++++++||++|.|+.++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 112223444433 5799999999999998554
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=152.22 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=107.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC---Cccccccc--ceeEEEEEEEEEe-------------c--C----cEEEEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFY 65 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 65 (173)
+.+.++|+++|..++|||||+++|.+. .+.....+ |....+....... + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 455799999999999999999998732 22333223 4433333333211 0 1 137899
Q ss_pred EEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHH
Q 030693 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTF 141 (173)
Q Consensus 66 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~ 141 (173)
+|||||++.|.......+..+|++++|+|++++.........+..+... ...|+++++||+|+.+... .++..++
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 165 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYRQIKEF 165 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence 9999999998877777788899999999999642111111222222222 2457999999999976432 1222334
Q ss_pred HHH---cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 142 HRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 142 ~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+.. .+++++++||++|.|+++++++|.+.+
T Consensus 166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 433 367899999999999999999998754
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=157.06 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=110.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCC-------ccc-------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
+.+||+++|.+++|||||+++|+... +.. ......|.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999987531 110 0011234444433344445567899999999999988
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccc-----ccHHHHHHHHHcC-----
Q 030693 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-----VKAKQVTFHRKKN----- 146 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~----- 146 (173)
.+..++..+|++++|+|+++....+... ++..+.. .++| +++++||+|+.+.. ...+..+++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 8888899999999999999864333322 2233333 2788 78999999997521 1123345555554
Q ss_pred CcEEEEccCCCCC----------hHHHHHHHHHHh
Q 030693 147 LQYYEISAKSNYN----------FEKPFLYLARKL 171 (173)
Q Consensus 147 ~~~~~~S~~~~~~----------i~~~~~~i~~~i 171 (173)
++++++||++|.| +.++++++.+.+
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 889999887754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-23 Score=141.69 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=89.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccc---cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccC--
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH-- 85 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~-- 85 (173)
...++|+++|++|+|||||++++..+.+... ..++.+ .+.....+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 4568999999999999999999888765431 111111 11145678999999999998888888876
Q ss_pred --CCEEEEEEECC-ChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccccccH
Q 030693 86 --GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA 136 (173)
Q Consensus 86 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~ 136 (173)
+|++++|+|++ +++++..+..|+..+.... ++.|+++|+||+|+.+.....
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 175 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 175 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHH
Confidence 89999999999 8899988888877775432 489999999999997754433
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-23 Score=149.70 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=91.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCc-cccc-------ccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-------
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------- 76 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------- 76 (173)
..++|+++|.+|+|||||+|+++.... ...+ .++.+.+........++..+.+.+|||||.....
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 469999999999999999999665433 3332 4555555555555555566799999999974322
Q ss_pred Ccc-------hhhcc-------------CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH
Q 030693 77 GLR-------DGYYI-------------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (173)
Q Consensus 77 ~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (173)
.+. ..++. .+|+++++++.+.......-..++..+.. ++|+++|+||+|+.......
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~ 163 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQ 163 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHH
Confidence 111 22222 37799999987653211222234444444 89999999999986533221
Q ss_pred ----HHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 137 ----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 137 ----~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
...+.....++.++++|+.+++|+.+++++|.+.+
T Consensus 164 ~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 164 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 23345556789999999999999999999987653
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-23 Score=158.51 Aligned_cols=159 Identities=15% Similarity=0.098 Sum_probs=112.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC--------Ccccc-------cccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
....++|+++|.+++|||||+++|+.. .+... .....|.+.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 346799999999999999999998762 11100 011334444444444555667899999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccc-cc----cHHHHHHHHHcC--
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-QV----KAKQVTFHRKKN-- 146 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~-~~----~~~~~~~~~~~~-- 146 (173)
|...+..++..+|++++|+|++++...+ ...++..+... ++| +++++||+|+.+. .. ..+..+++...+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 9888888999999999999999865332 33444554443 788 8999999999742 11 112334555554
Q ss_pred ---CcEEEEccCCCCC------------------hHHHHHHHHHHh
Q 030693 147 ---LQYYEISAKSNYN------------------FEKPFLYLARKL 171 (173)
Q Consensus 147 ---~~~~~~S~~~~~~------------------i~~~~~~i~~~i 171 (173)
.+++++||++|.| +.++++++.+.+
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 6899999999987 778888877643
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-24 Score=162.36 Aligned_cols=155 Identities=18% Similarity=0.131 Sum_probs=102.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCC--------cccccCcchhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLRDGY 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~ 82 (173)
+...+|+++|.+|+|||||+|+|++.... ....+.|++..............+.+||||| ++++...+..+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 45679999999999999999998776543 3456778888777777776777999999999 66677778888
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
++.+|++++|+|..++. .....++..+... .++|+++|+||+|+.+... ...++........+++||++|.|+.+
T Consensus 100 ~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~--~~~e~~~lg~~~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGV--TAADEEVAKILYR-TKKPVVLAVNKLDNTEMRA--NIYDFYSLGFGEPYPISGTHGLGLGD 174 (456)
T ss_dssp HHHCSEEEEEEESSSCS--CHHHHHHHHHHTT-CCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTHHH
T ss_pred HhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH-cCCCEEEEEECccchhhhh--hHHHHHHcCCCceEEeecccccchHH
Confidence 99999999999987643 2223333333222 4899999999999865321 11122222223568999999999999
Q ss_pred HHHHHHHHh
Q 030693 163 PFLYLARKL 171 (173)
Q Consensus 163 ~~~~i~~~i 171 (173)
+++++.+.+
T Consensus 175 L~~~i~~~l 183 (456)
T 4dcu_A 175 LLDAVAEHF 183 (456)
T ss_dssp HHHHHHTTG
T ss_pred HHHHHHhhc
Confidence 999987654
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=150.59 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=91.2
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCC----------hhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCC
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D 128 (173)
.+.+++|||+|+++++..|..|+++++++|+|||+++ ..++.....|+..+... .+++|+++|+||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 4789999999999999999999999999999999999 88999999999888764 36899999999999
Q ss_pred Cccccc--------------------------------cHHHHHH-----HHH--------cCCcEEEEccCCCCChHHH
Q 030693 129 VKNRQV--------------------------------KAKQVTF-----HRK--------KNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 129 l~~~~~--------------------------------~~~~~~~-----~~~--------~~~~~~~~S~~~~~~i~~~ 163 (173)
+..... ..+...+ +.. ..+.++++||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 854211 1122233 222 2456789999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|+++.+.++
T Consensus 376 F~~v~~~I~ 384 (402)
T 1azs_C 376 FNDCRDIIQ 384 (402)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887664
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-24 Score=160.17 Aligned_cols=152 Identities=19% Similarity=0.234 Sum_probs=101.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--Cccccc---------------------------ccceeEEEEEEEEEecCcE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------EPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 61 (173)
.+.++|+++|.+++|||||+++|+.. .+.... ....|.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45799999999999999999998753 222110 0012334333333444566
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh-----cCCC-CEEEEEeCCCCcccc--
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENI-PIVLCGNKVDVKNRQ-- 133 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~-p~ivv~nK~Dl~~~~-- 133 (173)
..+.+|||||+++|...+..++..+|++++|+|+++ .+++....|..+..+. ..+. |+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 789999999999999889999999999999999998 5555333222222111 0244 689999999997621
Q ss_pred ------ccHHHHHHHHHcC-----CcEEEEccCCCCChHHH
Q 030693 134 ------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (173)
Q Consensus 134 ------~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 163 (173)
...+..+++...+ ++++++||++|.|+.++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1223345555554 67999999999999754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=153.06 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=99.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEE--EEEecCcEEEEEEEeCCCcccccCcc----------
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLR---------- 79 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~~~~~~~---------- 79 (173)
..++|+++|++|+|||||++++++.... ...+..|++.... .+..++ ..+.+|||+|..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHHH
Confidence 4589999999999999999998765432 1233444444333 333343 368899999975433221
Q ss_pred --hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-cH-HHH-HHHH----HcCCcEE
Q 030693 80 --DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KA-KQV-TFHR----KKNLQYY 150 (173)
Q Consensus 80 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~-~~~-~~~~----~~~~~~~ 150 (173)
..+++.+|++++|+|++++.+.+.. .+...+.. .+.|+++|+||+|+.+... .. +.. .+.. ...++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2356789999999999976554432 22233333 3889999999999875322 11 111 2222 2357899
Q ss_pred EEccCCCCChHHHHHHHHHHh
Q 030693 151 EISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 151 ~~S~~~~~~i~~~~~~i~~~i 171 (173)
++||++|.|++++|+.+.+.+
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999988654
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=152.71 Aligned_cols=150 Identities=20% Similarity=0.222 Sum_probs=101.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCc--ccc----------cccc-------------------eeEEEEEEEEEecC
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK----------YEPT-------------------IGVEVHPLDFFTNC 59 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~ 59 (173)
...+||+++|.+++|||||+++|+.+.. ... ...+ .|.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3458999999999999999999875431 100 0011 12222222223344
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCC-CEEEEEeCCCCcccc-----
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQ----- 133 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~----- 133 (173)
....+.+|||||+++|...+..++..+|++++|+|++++...+ ...++..+... +. |+++|+||+|+.+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence 5678999999999999888888999999999999999864322 23333333332 44 599999999997621
Q ss_pred -ccHHHHHHHHHcC-----CcEEEEccCCCCChHHH
Q 030693 134 -VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (173)
Q Consensus 134 -~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 163 (173)
...+..+++...+ ++++++||++|.|+.++
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1223335556666 67999999999999873
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=155.88 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=104.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccc----cccceeEEEEEEEE------------EecCcEEEEEEEeCCCccc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDF------------FTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~~~D~~G~~~ 74 (173)
.+..+|+++|++++|||||+++++....... ..++.+........ ........+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3568999999999999999999876543221 11233322221110 0001122589999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCC---hhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--------------cH-
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KA- 136 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~- 136 (173)
|...+..+++.+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+..... ..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 99999999999999999999998 44444332 2333 3899999999999864211 00
Q ss_pred ----------HHHHHHHHc---------------CCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 137 ----------KQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 137 ----------~~~~~~~~~---------------~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
+......+. ..+++++||++|.|++++++++...+
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 011111111 23789999999999999999998653
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=146.25 Aligned_cols=154 Identities=17% Similarity=0.074 Sum_probs=100.5
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHhhCCcccccccceeEE--EEEEEEEecCcEEEEEEEeCCCccc---------ccCcch
Q 030693 13 SFK-LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRD 80 (173)
Q Consensus 13 ~~~-i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~ 80 (173)
.++ |+++|++|+|||||++++.+...... ...+.+ .....+.+++ ..+.+|||+|.-. ++.. .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-L 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-H
Confidence 355 99999999999999999876654221 111222 2223344444 5789999999622 2222 2
Q ss_pred hhccCCCEEEEEEECCChh--hhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccH---HHHHHHHHc---CCcEEE
Q 030693 81 GYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYE 151 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~---~~~~~~ 151 (173)
..+..+|++++|+|++++. ....+..|...+.... .+.|+++|+||+|+.+..... ....++... +..+++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 2467899999999999876 4555555555554432 578999999999987543111 111233443 346899
Q ss_pred EccCCCCChHHHHHHHHHHh
Q 030693 152 ISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i 171 (173)
+||+++.|+++++++|.+.+
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHh
Confidence 99999999999999998765
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-23 Score=160.22 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=105.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+..+|+++|++++|||||+++|....+.....+ |++.......+......+.+|||||++.|..++..++..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~--GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG--GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC--CCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCC--CeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 467999999999999999999876544322222 222221112222234578999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc---cHHHH---HHHHHc--CCcEEEEccCCCCChHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQV---TFHRKK--NLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~---~~~~~~--~~~~~~~S~~~~~~i~~~ 163 (173)
|+|++++...+.... +..+.. .++|+++++||+|+.+... ..+.. .+...+ .++++++||++|.|++++
T Consensus 81 VVda~~g~~~qT~e~-l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 81 VVAADDGVMPQTIEA-IQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp EEETTTBSCTTTHHH-HHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred EeecccCccHHHHHH-HHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 999988543333222 223322 3889999999999975321 11110 011222 268999999999999999
Q ss_pred HHHHHH
Q 030693 164 FLYLAR 169 (173)
Q Consensus 164 ~~~i~~ 169 (173)
++++..
T Consensus 158 le~I~~ 163 (501)
T 1zo1_I 158 LDAILL 163 (501)
T ss_dssp HHHTTT
T ss_pred hhhhhh
Confidence 999864
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-22 Score=147.68 Aligned_cols=142 Identities=7% Similarity=-0.032 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
+|+++|.+++|||||+++|+ ..|.+.......+......+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999977 12233222223344455679999999999998877888899999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhcCCCCE-EEEEe-CCCCccccccH----HHHHHHHHc---CCcEEE--EccCC---CCCh
Q 030693 95 VTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQVKA----KQVTFHRKK---NLQYYE--ISAKS---NYNF 160 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~----~~~~~~~~~---~~~~~~--~S~~~---~~~i 160 (173)
+.. .......++..+... ++|. ++++| |+|+ +..... +..+++... .+++++ +||++ +.|+
T Consensus 93 -~~g-~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred -CCC-CcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 543 233344455544443 7787 88999 9999 532211 223344333 368999 99999 9999
Q ss_pred HHHHHHHHHHh
Q 030693 161 EKPFLYLARKL 171 (173)
Q Consensus 161 ~~~~~~i~~~i 171 (173)
+++++.|.+.+
T Consensus 168 ~~L~~~l~~~~ 178 (370)
T 2elf_A 168 DELKARINEVA 178 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999988754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-23 Score=152.03 Aligned_cols=156 Identities=18% Similarity=0.310 Sum_probs=85.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCC-ccccc--------ccceeEEEEEEEEEecCcEEEEEEEeCCCc-------ccc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-------~~~ 75 (173)
..++|+++|++|+|||||+++|+... +...+ .++.+.+.........+..+.+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 35899999999999999999966543 22222 134444433333344455678999999998 667
Q ss_pred cCcch-------hhccCCCEE-----------EEEEECCC-hhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030693 76 GGLRD-------GYYIHGQCA-----------IIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 76 ~~~~~-------~~~~~~~~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
..++. .|++.++++ +++|++++ ..++..+. .++..+ ..++|+++|+||+|+......
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHH
Confidence 77765 555544332 35555554 44555554 344433 358999999999999763322
Q ss_pred ----HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 136 ----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 136 ----~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+..+++..++++++++||+++.+ .+.|.++.+.+
T Consensus 193 ~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 193 ERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 233456667789999999999998 77777776655
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-22 Score=162.68 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=110.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCC-------ccc-------ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
..+.++|+++|.+++|||||+++|.... +.. ....+.|++.......++.....+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3567999999999999999999987531 000 11224455554433445556678999999999999
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc-----cHHHHHHHHHcC---
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN--- 146 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~--- 146 (173)
......++..+|++|+|+|++++...+ ...++..+... ++| +++++||+|+.+... ..+..+++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 888888899999999999999875433 33444444443 788 789999999975221 123345555554
Q ss_pred --CcEEEEccCCC--------CChHHHHHHHHHHh
Q 030693 147 --LQYYEISAKSN--------YNFEKPFLYLARKL 171 (173)
Q Consensus 147 --~~~~~~S~~~~--------~~i~~~~~~i~~~i 171 (173)
++++++||++| .|+.+++++|.+.+
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 46889999887643
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-23 Score=156.17 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=89.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh--CCccccc---------------------------ccceeEEEEEEEEEecCcE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKKY---------------------------EPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~--~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 61 (173)
...++|+++|..++|||||+++|+. +.+.... ....|.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 3468999999999999999999864 2221100 0011222222111223345
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hhhcHHHHHHHHhhh-cCCCC-EEEEEeCCCCcccc---
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCRV-CENIP-IVLCGNKVDVKNRQ--- 133 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~p-~ivv~nK~Dl~~~~--- 133 (173)
..+.+|||||+++|...+..++..+|++++|+|++++. +|+...++.+.+... ..++| +++++||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 78999999999999999998999999999999999863 443222222222211 23777 99999999996421
Q ss_pred -----ccHHHHHHHHHc-------CCcEEEEccCCCCChHHHH
Q 030693 134 -----VKAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 134 -----~~~~~~~~~~~~-------~~~~~~~S~~~~~~i~~~~ 164 (173)
...+...++... +++++++||++|.|+.+++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 112233455544 3569999999999998754
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-22 Score=154.88 Aligned_cols=150 Identities=15% Similarity=0.176 Sum_probs=101.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--Ccccc---------------------------cccceeEEEEEEEEEecCcE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (173)
.+.++|+++|.+++|||||+++|+.. .+... .....|.+.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45799999999999999999998753 21110 00012333322223344456
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hhh---cHHHHHHHHhhhcCCCC-EEEEEeCCCCcc--c
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKN--R 132 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~--~ 132 (173)
..+.+|||||+++|...+..++..+|++++|+|++++. +|+ .....+..... .++| +++++||+|+.+ .
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCH
Confidence 78999999999999988888999999999999999763 332 12222222222 3666 899999999973 1
Q ss_pred c----ccHHHHHHHHHcC-----CcEEEEccCCCCChHH
Q 030693 133 Q----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (173)
Q Consensus 133 ~----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 162 (173)
. ...+..+++...+ ++++++||++|.|+.+
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 1 1122334445544 6899999999999864
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-22 Score=157.16 Aligned_cols=153 Identities=21% Similarity=0.189 Sum_probs=101.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccc-----------------------------ccceeEEEEEEEEEecCcE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------EPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (173)
.+.+||+++|.+++|||||+++|+.....-.. ....|++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45799999999999999999998754221000 0012444443333444466
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hhh--cHHHHHHHHhhhcCCCCEEEEEeCCCCccc--cc
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNR--QV 134 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~ 134 (173)
..+.+|||||+++|...+..+++.+|++++|+|++++. ++. ....+...+.......|+++|+||+|+.+. ..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 78999999999999999999999999999999999753 111 111122222222223459999999999762 11
Q ss_pred ----cHHHHHHHHHc-----CCcEEEEccCCCCChHHH
Q 030693 135 ----KAKQVTFHRKK-----NLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 135 ----~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~~ 163 (173)
..+...++... +++++++||++|.|+.++
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11222333333 368999999999999865
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-22 Score=143.19 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=100.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccc----cccee----------------------EEEE-------------
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIG----------------------VEVH------------- 51 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~----------------------~~~~------------- 51 (173)
....+|+++|.+|+|||||+++|++..+.+.. ....+ ++..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999998877653211 11111 0000
Q ss_pred ----------EEEEEec-CcEEEEEEEeCCCccc-------------ccCcchhhccCCCEEE-EEEECCChhhhhcHHH
Q 030693 52 ----------PLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAI-IMFDVTARLTYKNVPT 106 (173)
Q Consensus 52 ----------~~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 106 (173)
...+... .....+.+|||||... +...+..+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0011111 1136799999999642 3345666788888776 7999987654444334
Q ss_pred HHHHHhhhcCCCCEEEEEeCCCCccccc-cHHHHHH-HHH--cC-CcEEEEccCCCCChHHHHHHHHH
Q 030693 107 WHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTF-HRK--KN-LQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 107 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~--~~-~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+...+.. .+.|+++|+||+|+.+... ..+..+- ... .+ .+++++||++|.|++++++++.+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 5555543 3789999999999976432 1111110 001 11 35788999999999999999875
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=148.82 Aligned_cols=128 Identities=17% Similarity=0.172 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhCC--ccc------------------ccccceeEEEEEEEEEecCc
Q 030693 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
|.|........+..+|+++|.+++|||||+++|+... ... ......|.+.......+...
T Consensus 1 m~m~~l~~~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~ 80 (529)
T 2h5e_A 1 MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH 80 (529)
T ss_dssp --CCTHHHHHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET
T ss_pred CchhhhhhhhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC
Confidence 4444333223457899999999999999999988531 100 00112233332222333445
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
.+.+.+|||||++.|...+..+++.+|++++|+|++++..... ..++..+.. .++|+++++||+|+..
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI 148 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence 6889999999999999888889999999999999997642221 222333332 3899999999999865
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-22 Score=155.75 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=87.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCC--cccc---------------------------cccceeEEEEEEEEEecCcE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (173)
...++|+++|.+++|||||+++|+... .... .....|++.......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 456899999999999999999986321 0000 00122444444444444456
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh---hh--h-cHHHHHHHHhhhcCCCC-EEEEEeCCCCcc--c
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--K-NVPTWHRDLCRVCENIP-IVLCGNKVDVKN--R 132 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~-~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~--~ 132 (173)
..+.+|||||++.|...+..++..+|++|+|+|++++. ++ . .....+..+.. .++| +++|+||+|+.+ .
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTTCH
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEeccccccccH
Confidence 78999999999999999899999999999999998653 22 1 11222222222 2666 999999999975 1
Q ss_pred cc----cHHHHHHH-HHcCC-----cEEEEccCCCCChH--------------HHHHHHHH
Q 030693 133 QV----KAKQVTFH-RKKNL-----QYYEISAKSNYNFE--------------KPFLYLAR 169 (173)
Q Consensus 133 ~~----~~~~~~~~-~~~~~-----~~~~~S~~~~~~i~--------------~~~~~i~~ 169 (173)
.. ..+...+. ...++ +++++||++|.|+. ++++.|.+
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~ 393 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ 393 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence 11 11222333 33343 69999999999998 67777654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-21 Score=131.03 Aligned_cols=154 Identities=14% Similarity=0.011 Sum_probs=94.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc----------cCcchh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLRDG 81 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~ 81 (173)
+..+|+++|++|+|||||++++.+..+.....++.|.+.....+..++ .+.+||+||.... +.....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 457999999999999999999776654444456666655433333332 5789999997431 222223
Q ss_pred hc---cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHHHHHcC--CcEEEE
Q 030693 82 YY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--LQYYEI 152 (173)
Q Consensus 82 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~--~~~~~~ 152 (173)
++ ..++++++++|++++.+.... .....+.. .+.|+++++||+|+..... ......++.... +.++++
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 33 468999999999876543221 11122222 3789999999999865321 122334444443 567899
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030693 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
|++++.|+.++++++.+.+
T Consensus 179 Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=148.71 Aligned_cols=127 Identities=20% Similarity=0.158 Sum_probs=85.9
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCCHHHHHHHHhhC--Ccccc--------cc------cceeEEEEEEEEEecCcEEEE
Q 030693 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK--------YE------PTIGVEVHPLDFFTNCGKIRF 64 (173)
Q Consensus 1 m~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~--------~~------~~~~~~~~~~~~~~~~~~~~~ 64 (173)
|++.... ...+..+|+++|.+|+|||||+++|+.. ..... .. ...+.+.......+....+.+
T Consensus 1 M~~~l~~-~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i 79 (691)
T 1dar_A 1 MAVKVEY-DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRI 79 (691)
T ss_dssp CCTTCCC-CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEE
T ss_pred CCccccC-ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEE
Confidence 5544333 2345789999999999999999998732 11000 00 011222222222222345789
Q ss_pred EEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 65 ~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
.+|||||+..+...+..+++.+|++++|+|+++..+.+....|.. +... ++|+++|+||+|+..
T Consensus 80 ~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 80 NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKTG 143 (691)
T ss_dssp EEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTT
T ss_pred EEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCccc
Confidence 999999999999899999999999999999998876665554543 3333 899999999999865
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=148.23 Aligned_cols=116 Identities=19% Similarity=0.148 Sum_probs=82.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCccccccc----------------ceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
+..+|+++|+.|+|||||+++++.......... ..+.+.......+....+.+.+|||||++.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 457899999999999999999874322100000 1122332233333335688999999999999
Q ss_pred cCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
...+..+++.+|++++|+|+++....+. ..++..+... ++|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc--cCCEEEEecCCchh
Confidence 8888999999999999999887643322 2344444443 89999999999987
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-20 Score=130.51 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=83.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhcc------
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI------ 84 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------ 84 (173)
.+.++|+++|.+|+|||||++++++...... .+..+.+..............+.+|||||++.+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV-SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC-CSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4689999999999999999999887664221 222333333333333335568999999999888766655554
Q ss_pred ---CCCEEEEEEECCChhhhhcH-HHHHHHHhhhcC---CCCEEEEEeCCCCcc
Q 030693 85 ---HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (173)
Q Consensus 85 ---~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 131 (173)
.+|++++|++++... +... ..|+..+..... ..|+++|+||+|+..
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999998654 4433 356777766542 348999999999853
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=135.68 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcc-cccc-cceeEEEEEEEEEecCcEEEEEEEeCCCccc----ccCcchhh---ccC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGY---YIH 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~ 85 (173)
.|+++|++|+|||||++++...... ..+. .+...+.. .+..++ ...+.+||+||... +..+...+ +..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G--~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG--VVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE--EEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee--EEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 4899999999999999997654321 0111 11111111 122222 35789999999743 22333333 346
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhc---CCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
++.+++++|++ ...+..+..+..++.... .+.|.++++||+|+..........+.+...+.+++.+||++++|+++
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 89999999998 555666666666655442 36899999999999876322233345555678999999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
++++|.+.+.
T Consensus 315 L~~~i~~~l~ 324 (416)
T 1udx_A 315 LKEALHALVR 324 (416)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-20 Score=135.73 Aligned_cols=158 Identities=19% Similarity=0.284 Sum_probs=83.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC-Cccccc--------ccceeEEEEEEEEEecCcEEEEEEEeCCCc-------cc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-------~~ 74 (173)
.-.++|+++|++|+|||||++++.+. .++... .++.+...........+....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999997654 333322 112211111122222344578999999998 55
Q ss_pred ccCcch-------hhccC-------------CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 75 FGGLRD-------GYYIH-------------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 75 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
+..+.. .++++ +++++++.+.+. .+++.... ..+.....+.|+++|+||+|+.....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 555544 44332 234555554332 23443331 33333335789999999999875321
Q ss_pred ----cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 135 ----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 135 ----~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
..+..+++..+++.++++||+++ |++++|+++.+.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 23445778888999999999999 99999999988764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-21 Score=137.63 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=107.8
Q ss_pred HHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChh-hhhcHH
Q 030693 28 TFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVP 105 (173)
Q Consensus 28 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 105 (173)
+|+.++..+.+. ..+.||+|..+. ..... .. .+.+||+ +++++.+++.+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~--~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDE--TG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCC--SS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcC--CC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577788888887 788899995443 33222 22 7899999 8999999999999999999999999987 678888
Q ss_pred HHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcC--CcEEEEccCCCCChHHHHHHHHH
Q 030693 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 106 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
.|+..+.. .++|+++|+||+|+.+....++..+++..++ +.++++||++|.|++++|+.+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 89887765 4899999999999976432233456666666 89999999999999999988653
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=129.85 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=83.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchh-------h-
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-------Y- 82 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~-------~- 82 (173)
...++|+++|.+|+|||||+++|++..... ...+.+++..............+.+|||||.+.+...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 457999999999999999999988766422 1233344444444444445678999999998876543332 1
Q ss_pred -ccCCCEEEEEEECCChhhhhcH-HHHHHHHhhhcC-C--CCEEEEEeCCCCcc
Q 030693 83 -YIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE-N--IPIVLCGNKVDVKN 131 (173)
Q Consensus 83 -~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~--~p~ivv~nK~Dl~~ 131 (173)
.+.+|++++|+|++.. ++... ..|+..+...+. + .|+++|+||+|+..
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 3479999999998753 34433 356777765543 2 69999999999864
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=141.34 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=82.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh--CCcccc--------ccc------ceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YEP------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~--~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
.+..+|+++|.+|+|||||+++|+. +..... ... ..+++.......+....+.+.+|||||+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4578999999999999999999874 222100 000 112222222222222457899999999999
Q ss_pred ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
+...+..+++.+|++++|+|++++.+.+....|. .+... ++|+++|+||+|+..
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~--~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY--GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT--TCCEEEEEECTTSTT
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc--CCCEEEEEECCCccc
Confidence 9888899999999999999999876655554443 34443 899999999999865
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=141.82 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=75.4
Q ss_pred EEEEEeCCCccc---ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc---ccH
Q 030693 63 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKA 136 (173)
Q Consensus 63 ~~~~~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~ 136 (173)
.+.+|||||... ....+..+++.+|++++|+|++++.+......|...+... +.|+++|+||+|+.... ...
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECcccccccccChhh
Confidence 589999999654 3345667889999999999999876665554454444332 77899999999986542 000
Q ss_pred ---------HHHH-----HHHH--------cCCcEEEEccC--------------CCCChHHHHHHHHHHh
Q 030693 137 ---------KQVT-----FHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKL 171 (173)
Q Consensus 137 ---------~~~~-----~~~~--------~~~~~~~~S~~--------------~~~~i~~~~~~i~~~i 171 (173)
.... +... ....++++||+ ++.|++++++++.+.+
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 0111 1111 12468999999 9999999999988755
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=138.97 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=82.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhC--Ccccc-----------cc---cceeEEEEEE--EEEe-----cCcEEEEEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK-----------YE---PTIGVEVHPL--DFFT-----NCGKIRFYCW 67 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~-----------~~---~~~~~~~~~~--~~~~-----~~~~~~~~~~ 67 (173)
.+..+|+++|..++|||||+++|+.. ..... +. ...+.+.... .+.. ++..+.+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999998642 11110 00 0112222221 2221 2234899999
Q ss_pred eCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 68 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
||||+..|...+..+++.+|++++|+|+++..+.+....| ..... .++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH--cCCCEEEEEeCCCccc
Confidence 9999999988899999999999999999987654444333 33333 3899999999999864
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=129.22 Aligned_cols=106 Identities=9% Similarity=0.091 Sum_probs=68.3
Q ss_pred EEEEEEeCCCccc-------------ccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030693 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 62 ~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
..+.+|||||... +...+..++..+|++++|+|.++.. .......+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 5799999999753 3345666788999999999975432 11222233334433 378999999999
Q ss_pred CCccccccHHHHHHHHH----cCCcEEEEccCC------CCChHHHHHHHHHHh
Q 030693 128 DVKNRQVKAKQVTFHRK----KNLQYYEISAKS------NYNFEKPFLYLARKL 171 (173)
Q Consensus 128 Dl~~~~~~~~~~~~~~~----~~~~~~~~S~~~------~~~i~~~~~~i~~~i 171 (173)
|+.+.... ..+.... .+..++++++.+ +.|+.++++.+.+.+
T Consensus 209 Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 209 DLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred ccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 99764321 1222222 225677776654 688899988876643
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=135.28 Aligned_cols=85 Identities=26% Similarity=0.327 Sum_probs=47.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccc-cc-----ccceeEEEEEEEE---------------EecC-cEEEEEEEeCCC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLDF---------------FTNC-GKIRFYCWDTAG 71 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~-----~~~~~~~~~~~~~---------------~~~~-~~~~~~~~D~~G 71 (173)
++|+++|.+|+|||||+|++....... .+ .+..|........ ..++ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999987665211 11 1122211110000 0111 247899999999
Q ss_pred ccc----ccCcch---hhccCCCEEEEEEECCCh
Q 030693 72 QEK----FGGLRD---GYYIHGQCAIIMFDVTAR 98 (173)
Q Consensus 72 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 98 (173)
... ++.+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222333 346899999999999874
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-19 Score=131.91 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=80.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccc--------ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-----
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----- 77 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----- 77 (173)
.-.++|+++|++|+|||||++.|++..+.... .++.+...........+....+++||++|...+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34588999999999999999998766542111 12222111111112223345799999999765321
Q ss_pred --------------------cchhhccCCCEEEEEEECCCh-hhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc-c
Q 030693 78 --------------------LRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-V 134 (173)
Q Consensus 78 --------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~ 134 (173)
+.+.++.++++.+++|+.... .++.... .|+..+. .++|+++|+||+|+.... .
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHH
Confidence 223455566655555555443 3455444 4666654 378999999999986532 2
Q ss_pred c---HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 135 K---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 135 ~---~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
. ....+.+..+++.++++|+.++.++.+++..+...+
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2 234466777899999999999999999888776643
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-19 Score=132.03 Aligned_cols=152 Identities=12% Similarity=0.117 Sum_probs=96.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccccccccee---EE----------------------------------------
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VE---------------------------------------- 49 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~---~~---------------------------------------- 49 (173)
-.+|+|+|.+|+|||||++++.+..+.+....... +.
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34999999999999999999887665322221110 00
Q ss_pred ---------EEEEEEEe-cCcEEEEEEEeCCCcccc-------------cCcchhhccCCCEEEEEEECCChhhhhcHHH
Q 030693 50 ---------VHPLDFFT-NCGKIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPT 106 (173)
Q Consensus 50 ---------~~~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 106 (173)
.......+ ......+.+|||||...+ ..+...|+.++|++++|+|..+..... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 00001111 112346899999998776 455677899999999999876543222 23
Q ss_pred HHHHHhhhc-CCCCEEEEEeCCCCccccc-cHH-HHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 107 WHRDLCRVC-ENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 107 ~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|+..+.... .+.|+++|+||+|+.+... ..+ ........+..|+++++.++.++++.+..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 333333332 3789999999999876432 222 12233445688999999998887765433
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=129.63 Aligned_cols=117 Identities=16% Similarity=0.138 Sum_probs=83.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC--Ccc------------------cccccceeEEEEEEEEEecCcEEEEEEEeCCC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFE------------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 71 (173)
+.-+|+|+|..++|||||.++|+.. ... .......|++.......+....+.+.++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 3578999999999999999998631 100 00011223333333334444668899999999
Q ss_pred cccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
+..|..-....++-+|++++|+|+.+.-..+...-| ....++ ++|.++++||+|...
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~--~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR--ATPVMTFVNKMDREA 166 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT--TCCEEEEEECTTSCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh--CCceEEEEecccchh
Confidence 999999999999999999999999987655554445 444444 999999999999764
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-19 Score=131.83 Aligned_cols=155 Identities=12% Similarity=0.108 Sum_probs=92.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccc----cceeE----------------------EE--------------
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE----PTIGV----------------------EV-------------- 50 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~----------------------~~-------------- 50 (173)
....+|+++|.+|+|||||+|+|++..+.+... ...+. ++
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999988766532111 11110 00
Q ss_pred ---------EEEEEEec-CcEEEEEEEeCCCccc-------------ccCcchhhccCCC-EEEEEEECCChhhhhcHHH
Q 030693 51 ---------HPLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQ-CAIIMFDVTARLTYKNVPT 106 (173)
Q Consensus 51 ---------~~~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~ 106 (173)
....+.+. .....+.+|||||... +..+...|+..++ ++++|.+++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 00011111 1235799999999642 2334556666665 5555666654322222222
Q ss_pred HHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHH------cC-CcEEEEccCCCCChHHHHHHHHH
Q 030693 107 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 107 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~-~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+...+.. .+.|+++|+||+|+.+..... ...... .+ ..++++||+++.|+.++++++.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~--~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCCC--HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcchhH--HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3344433 378999999999997643211 111111 12 24678999999999999998865
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=126.63 Aligned_cols=101 Identities=8% Similarity=-0.013 Sum_probs=70.1
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH-H
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V 139 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~ 139 (173)
.+.+.+|||||... ........+|++++|+|....+..+.+... ....|+++|+||+|+.+....... .
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 47899999999543 233445889999999998866544333211 124588999999999754322211 1
Q ss_pred HHHHH----------cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 140 TFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 140 ~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
++... ++.+++++||++|.|+++++++|.+.+
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 22111 257899999999999999999998764
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-18 Score=117.38 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=91.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEE--------------EEEEEEe----------------cCcEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--------------HPLDFFT----------------NCGKI 62 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~~ 62 (173)
..+|+++|.+|+|||||+++|+..............+. ....... .....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 46899999999999999999875421111011110000 0011111 11235
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--ccHHHHH
Q 030693 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVT 140 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~ 140 (173)
.+.+|||+|+.... ..+....+.+++|+|+++... ....+... . +.|+++|+||+|+.+.. ...+..+
T Consensus 110 d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~~~~ 179 (221)
T 2wsm_A 110 DLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F--RVADLIVINKVALAEAVGADVEKMKA 179 (221)
T ss_dssp SEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H--HTCSEEEEECGGGHHHHTCCHHHHHH
T ss_pred CEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h--hcCCEEEEecccCCcchhhHHHHHHH
Confidence 78899999851100 111135788999999876532 11111111 1 57889999999997532 2233334
Q ss_pred HHHHc--CCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 141 FHRKK--NLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 141 ~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
.+... ..+++++||++|.|+.++++++.+.+.
T Consensus 180 ~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 180 DAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 44443 478999999999999999999988653
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=135.50 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=85.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCC--ccc----------------ccccceeEEEEEEEEE------------ecCc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK----------------KYEPTIGVEVHPLDFF------------TNCG 60 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~------------~~~~ 60 (173)
.+..||+++|..++|||||+++|+... ... ....|+........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 346899999999999999999987531 100 0001221111122222 1334
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
.+.+.+|||||+..|...+..+++.+|++++|+|++++.+.+....|.... . .++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H--cCCCeEEEEECCCcch
Confidence 789999999999999999999999999999999999987777655554333 2 3889999999999863
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-16 Score=113.81 Aligned_cols=82 Identities=21% Similarity=0.098 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccccccc--ceeEEEEEEEEEecCc---------------EEEEEEEeCCCccccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFG 76 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~ 76 (173)
++|+++|.+|+|||||++++..........| |.+.+.. .+.+++. ...+.+|||||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 7899999999999999999887653221111 2222221 1222221 1579999999987653
Q ss_pred ----Ccch---hhccCCCEEEEEEECCC
Q 030693 77 ----GLRD---GYYIHGQCAIIMFDVTA 97 (173)
Q Consensus 77 ----~~~~---~~~~~~~~~i~v~d~~~ 97 (173)
.+.. .+++++|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2322 34789999999999985
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-17 Score=121.01 Aligned_cols=102 Identities=9% Similarity=-0.019 Sum_probs=62.9
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-HH
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQ 138 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~ 138 (173)
..+.+.++||+|.... .......+|++++|+|++.+...+.+.. .+ -..|.++|+||+|+.+..... ..
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~ 234 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQ 234 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHH
Confidence 3467899999996421 2345678999999999987643222211 11 256889999999996532111 11
Q ss_pred HHHHH----------HcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 139 VTFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 139 ~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
..+.. .+..+++++||++|.|+++++++|.+.+
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 11111 1245789999999999999999998753
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=127.52 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=78.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCc-----------------------E------
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCG-----------------------K------ 61 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------------~------ 61 (173)
...+|+|+|.+|+|||||+|+|++..... .......++... .+..... +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE-EEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE-EEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 46899999999999999999998776531 111111111100 0000000 0
Q ss_pred -----------EEEEEEeCCCccc-----------ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC
Q 030693 62 -----------IRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP 119 (173)
Q Consensus 62 -----------~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p 119 (173)
..+.+|||||... +...+..++..+|++++|+|+++.........++..+... +.|
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~p 220 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDK 220 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCC
Confidence 2588999999764 3345566788999999999998754444455566666543 678
Q ss_pred EEEEEeCCCCcccc
Q 030693 120 IVLCGNKVDVKNRQ 133 (173)
Q Consensus 120 ~ivv~nK~Dl~~~~ 133 (173)
+++|+||+|+....
T Consensus 221 vilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 221 IRVVLNKADMVETQ 234 (550)
T ss_dssp EEEEEECGGGSCHH
T ss_pred EEEEEECCCccCHH
Confidence 99999999997643
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-18 Score=120.95 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=87.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEE------------EEEEEec-Cc------------------
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH------------PLDFFTN-CG------------------ 60 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 60 (173)
+..+|+++|.+|+|||||+++|+...+...+.++.+.+.. ......+ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999998876544433444443322 1111111 10
Q ss_pred -EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--ccHH
Q 030693 61 -KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAK 137 (173)
Q Consensus 61 -~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~ 137 (173)
...+.++|++|.-.. ...+-...+..+.+.|......... ..... . +.|.++|+||+|+.+.. ...+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~ 186 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M--KTADLIVINKIDLADAVGADIKK 186 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H--TTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH---h--hcCCEEEEeccccCchhHHHHHH
Confidence 114555666652100 0011122345566676532211111 00111 1 56889999999997642 2333
Q ss_pred HHHHHHHc--CCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 138 QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 138 ~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
..+++... +++++++||++|.|++++|+++.+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 44455543 67899999999999999999998765
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-16 Score=116.29 Aligned_cols=101 Identities=12% Similarity=-0.018 Sum_probs=64.9
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH---
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 137 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--- 137 (173)
.+.+.+|||||...... .....+|++++|+|++.....+.+.. .. .+.|.++|+||+|+.+......
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh----hcccCEEEEECCCCCChHHHHHHHH
Confidence 46899999999654332 24688999999999986544332221 11 1457899999999976422111
Q ss_pred -HHHHHHHc-------CCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 138 -QVTFHRKK-------NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 138 -~~~~~~~~-------~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
........ ..+++++||++|.|+++++++|.+.+
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11111121 45789999999999999999998754
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-17 Score=128.96 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CCcccc-----------c---ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------Y---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~--~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
.||+|+|+.++|||||.++|+. +..... + ....|++.......+...++.+.++|||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 5789999999999999999863 221110 0 00113444433444455667899999999999999
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
.....++-+|++++|+|+.+.-..+...-| ....+. ++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~--~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM--GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH--TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc--CCCeEEEEecccccc
Confidence 999999999999999999987544443333 444444 889999999999754
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=107.98 Aligned_cols=110 Identities=14% Similarity=0.008 Sum_probs=67.5
Q ss_pred EEEEEEEeCCCcccccCcch------hhccCCCEEEEEEECCChhhhhcHHHHHHHH-h-hhcCCCCEEEEEeCCCCccc
Q 030693 61 KIRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-C-RVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~-~-~~~~~~p~ivv~nK~Dl~~~ 132 (173)
.+.+.+|||||......... ..+.. +++++++|.....+........... . ....+.|+++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 35899999999875433221 13455 8888899876432222221111111 1 11237899999999998753
Q ss_pred cccHHHHH----------------------------HHHHcC--CcEEEEccCCCCChHHHHHHHHHHh
Q 030693 133 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 133 ~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
....+..+ ++...+ .+++++||+++.|++++++++.+.+
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 31111111 122333 4799999999999999999998764
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-15 Score=116.99 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=79.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCC--------ccc--------ccccceeEEEEE--EEEEec-----CcEEEEEEEe
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--------FEK--------KYEPTIGVEVHP--LDFFTN-----CGKIRFYCWD 68 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~--------~~~--------~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~D 68 (173)
+-.+|+|+|+.++|||||.++|+... ... ......|++... ..+... ...+.+.++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 34689999999999999999987321 000 001111233322 222222 2368999999
Q ss_pred CCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 69 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
||||-.|..-....++-+|++++|+|+...-..+...-|... .+. ++|.++++||+|...
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH--TCCEEEEEECSSSTT
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc--CCCeEEEEccccccC
Confidence 999999999889999999999999999987554444444333 343 899999999999753
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-15 Score=108.23 Aligned_cols=80 Identities=18% Similarity=0.122 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcc-c-----ccccceeEEEEEEEEEe------------c-----CcEEEEEEEeCC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-K-----KYEPTIGVEVHPLDFFT------------N-----CGKIRFYCWDTA 70 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~-~-----~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~D~~ 70 (173)
++|+++|.+|+|||||++++...... . ...++.|.. .+.. . .....+.+||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~----~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtp 77 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV----PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIA 77 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE----ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE----ecChHHHHHHHHHhcccccccccCCceEEEEECC
Confidence 68999999999999999998764321 1 122333321 1100 0 023579999999
Q ss_pred Cccccc----Ccch---hhccCCCEEEEEEECCC
Q 030693 71 GQEKFG----GLRD---GYYIHGQCAIIMFDVTA 97 (173)
Q Consensus 71 G~~~~~----~~~~---~~~~~~~~~i~v~d~~~ 97 (173)
|..++. .+.. ..++.+|++++|+|+++
T Consensus 78 Gl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 78 GLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 987653 2322 24789999999999985
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-15 Score=117.56 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=95.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc--c-------------------------------------------
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--T------------------------------------------- 45 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~------------------------------------------- 45 (173)
....+|+|+|.+++|||||+|++++..+-+.... |
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3456999999999999999999887654211100 0
Q ss_pred ----eeEEEEEEEEEec-CcEEEEEEEeCCCcccc-------------cCcchhhc-cCCCEEEEEEECCChhhhhcHHH
Q 030693 46 ----IGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-------------GGLRDGYY-IHGQCAIIMFDVTARLTYKNVPT 106 (173)
Q Consensus 46 ----~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 106 (173)
.+.+...+...+. .....+.++||||.... ..+...|+ ..+|++++|+|++......+...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0000011111111 11235789999996541 11223344 47899999999987543333323
Q ss_pred HHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHH------cC-CcEEEEccCCCCChHHHHHHHHH
Q 030693 107 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 107 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~-~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
++..+... +.|+++|+||+|+.+...... ..... .+ ..++++||++|.|++++++.+.+
T Consensus 209 ll~~L~~~--g~pvIlVlNKiDlv~~~~~~~--~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVDPQ--GQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHCTT--CSSEEEEEECTTSSCTTCCSH--HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHhc--CCCEEEEEeCcccCCcchhhH--HHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 44455443 789999999999976433221 11111 11 24678999999999999998876
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=105.16 Aligned_cols=116 Identities=12% Similarity=-0.016 Sum_probs=76.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC----c---chhhccC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----L---RDGYYIH 85 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~---~~~~~~~ 85 (173)
..+|+++|.||+|||||+|+|.+.. .. .....++|..+....+......++++||||.-.... . ....++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~-v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SE-AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CC-GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-Cc-ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 3689999999999999999976544 22 233444555555544444567899999999643221 1 1224678
Q ss_pred CCEEEEEEECCChhhh-hcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 86 GQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
+|++++|+|++++... +.+...+..........|.++++||.|..
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 9999999999987432 22333333332233467888999999964
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=104.35 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=79.5
Q ss_pred cccccCcchhhccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc---cHHHHHHHHHcCC
Q 030693 72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL 147 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~ 147 (173)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... ..+..+++...++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 6788888899999999999999999886 88888888887765 4899999999999976431 2334456667789
Q ss_pred cEEEEccCCCCChHHHHHHHHH
Q 030693 148 QYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 148 ~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+++++||++|.|++++++.+..
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHhhccC
Confidence 9999999999999999987643
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.2e-15 Score=99.59 Aligned_cols=102 Identities=6% Similarity=-0.088 Sum_probs=69.2
Q ss_pred CCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHH----hhh--cCCCCEEEEEeCC-CCccccccHHHHHH
Q 030693 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL----CRV--CENIPIVLCGNKV-DVKNRQVKAKQVTF 141 (173)
Q Consensus 69 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~----~~~--~~~~p~ivv~nK~-Dl~~~~~~~~~~~~ 141 (173)
.+|+++.+.+|++||.++|++|||+|.+|++..+ .+..+..+ .+. ..+.|++|++||. |++......+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 4589999999999999999999999999986544 45444332 222 2578999999995 78765544444332
Q ss_pred HH----HcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 142 HR----KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 142 ~~----~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.. .....+..|||.+|+|+.|.++||.+.+
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 21 1234578999999999999999998765
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=97.73 Aligned_cols=103 Identities=6% Similarity=-0.122 Sum_probs=74.7
Q ss_pred CCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHH----HHhhh--cCCCCEEEEEeC-CCCccccccHHHHHH
Q 030693 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR----DLCRV--CENIPIVLCGNK-VDVKNRQVKAKQVTF 141 (173)
Q Consensus 69 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~----~~~~~--~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 141 (173)
.+||++.+.+|++|+.++|++|||+|.+|++.++ .+..+. .+.+. ..+.|++|++|| .|++......+..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 5689999999999999999999999999987654 333332 23222 268999999996 688775544444332
Q ss_pred HHH----cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 142 HRK----KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 142 ~~~----~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
... ....+..|||.+|+|+.|.++|+.+.+.
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 211 2345789999999999999999998763
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-14 Score=103.31 Aligned_cols=101 Identities=8% Similarity=0.020 Sum_probs=61.3
Q ss_pred cEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHH-
Q 030693 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK- 137 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~- 137 (173)
..+.+.++||+|..... ......+|.+++++|....+..+.+...+ . ..|.++++||+|+.. ......
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h----ccccEEEEEchhccCchhHHHHH
Confidence 35689999999975321 23457899999999987543221111111 1 235577789999743 221111
Q ss_pred HHHHHHH----------cCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 138 QVTFHRK----------KNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 138 ~~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
...+... +..+++.+|++++.|++++++.|.+.
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1122111 14578999999999999999998764
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-13 Score=98.73 Aligned_cols=88 Identities=16% Similarity=0.005 Sum_probs=48.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCc---------------EEEEEEEeCCCccccc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFG 76 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~ 76 (173)
..++|+++|.+|+|||||++++.+........|....+.....+.+.+. ...+.+||+||..++.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3579999999999999999998766442221121111111122222221 2359999999987654
Q ss_pred C-------cchhhccCCCEEEEEEECCChh
Q 030693 77 G-------LRDGYYIHGQCAIIMFDVTARL 99 (173)
Q Consensus 77 ~-------~~~~~~~~~~~~i~v~d~~~~~ 99 (173)
. .+..+++++|++++|+|+.+.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 3456688999999999998543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-10 Score=87.08 Aligned_cols=85 Identities=15% Similarity=0.064 Sum_probs=52.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCc-ccccccceeEEEEEEEEEecCc---------------EEEEEEEeCCCccccc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFG 76 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~ 76 (173)
..+++++|++|+|||||+|.+.+... .....|....+...-.+.+.+. ...+.+||+||.....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 47899999999999999999887543 2221221111111112222221 1368999999954322
Q ss_pred -------CcchhhccCCCEEEEEEECCC
Q 030693 77 -------GLRDGYYIHGQCAIIMFDVTA 97 (173)
Q Consensus 77 -------~~~~~~~~~~~~~i~v~d~~~ 97 (173)
......++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 123345678999999999864
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-12 Score=97.70 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC----cccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc--------chh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGE----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDG 81 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~ 81 (173)
.+++++|.+|+|||||+|+++... .........|+|.....+..+.. +.++||||....... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 579999999999999999987641 11122333445555555544432 789999996432211 111
Q ss_pred hc--cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHH-HHHHcCCcEEEEccCCCC
Q 030693 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~ 158 (173)
++ ...+.++++++....-....+.. +..+.. .+.|+++++||.|...........+ +.+..+..+.+.++....
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~ 316 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYAA 316 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGGTT
T ss_pred HhcccccCceEEEEcCCceEEECCEEE-EEEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchhhh
Confidence 22 56799999998843211011100 111111 3679999999999877555454443 444556555555555444
Q ss_pred Ch
Q 030693 159 NF 160 (173)
Q Consensus 159 ~i 160 (173)
++
T Consensus 317 ~~ 318 (369)
T 3ec1_A 317 EF 318 (369)
T ss_dssp TC
T ss_pred hc
Confidence 44
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=90.90 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=73.5
Q ss_pred CcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-HHH----HHHHHc
Q 030693 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHRKK 145 (173)
Q Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~----~~~~~~ 145 (173)
..++|+.....+.+.++++++|+|++++. ..|...+.+...+.|+++|+||+|+.+..... ... ..+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 45778888999999999999999999864 34556666666689999999999997644322 222 335566
Q ss_pred CC---cEEEEccCCCCChHHHHHHHHHH
Q 030693 146 NL---QYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 146 ~~---~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
+. .++.+||++|.|++++++.+.+.
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 76 78999999999999999998653
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.9e-13 Score=98.90 Aligned_cols=135 Identities=11% Similarity=0.042 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc-----ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCc----chh---
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEF-----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----RDG--- 81 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----~~~--- 81 (173)
.+++++|.+|+|||||+|+++.... ........|+|.....+..... +.++||||....... ...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 5799999999999999999876421 1223455566666655554433 789999996433211 111
Q ss_pred -h--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHH-HHHcCCcEEEEcc
Q 030693 82 -Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF-HRKKNLQYYEISA 154 (173)
Q Consensus 82 -~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~S~ 154 (173)
+ ....+.++++++....-....+.. +..+.. .+.|+++++||.|...........++ .+..+..+.+.++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSCH
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE-EEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCCccCCCch
Confidence 1 246788888888742211011100 111111 36799999999998876555544443 3344444444443
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=82.70 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=69.2
Q ss_pred EEeCCCcc-cccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHH
Q 030693 66 CWDTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK 144 (173)
Q Consensus 66 ~~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 144 (173)
+...||+. +........+..+|+++.|+|+.++.+.... .+.+...++|.++|+||+|+.+....+...++...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~ 77 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFEN 77 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHT
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHh
Confidence 34578875 3444556678899999999999998766531 12222258999999999999874332222344555
Q ss_pred cCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 145 KNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 145 ~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.+.+++.+||+++.|+.++++.+.+.+
T Consensus 78 ~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 78 QGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp TTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred cCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 678999999999999999998876643
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-11 Score=87.98 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=71.4
Q ss_pred CcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-HHH----HHHHHc
Q 030693 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHRKK 145 (173)
Q Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~----~~~~~~ 145 (173)
.+++|+.....++..++++++|+|++++.+ .|...+.+...+.|+++|+||+|+.+..... ... ..+...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence 478888889999999999999999998763 3344444445689999999999997653322 222 234555
Q ss_pred CC---cEEEEccCCCCChHHHHHHHHHH
Q 030693 146 NL---QYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 146 ~~---~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
+. .++.+||++|.|++++++.+.+.
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 66 68999999999999999998654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=5e-10 Score=84.17 Aligned_cols=137 Identities=17% Similarity=0.222 Sum_probs=69.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccc--cccceeEEEEEEEEEecC--cEEEEEEEeCCCcccccC-----------
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGG----------- 77 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~G~~~~~~----------- 77 (173)
.++++|+|++|+|||||++.+.+-..... .....+.....+.+.... ....++++|++|......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 35799999999999999999765432211 111122223333332222 224789999998543211
Q ss_pred ---cchh-------------hccCC--CE-EEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCccccccHH
Q 030693 78 ---LRDG-------------YYIHG--QC-AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK 137 (173)
Q Consensus 78 ---~~~~-------------~~~~~--~~-~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 137 (173)
.+.. .+..+ |+ ++++.|...+- .... ..+..+ ..+.|+++|+||+|.........
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l--~~~Dieilk~L---~~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL--KSLDLVTMKKL---DSKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHT---CSCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC--CHHHHHHHHHH---hhCCCEEEEEcchhccchHHHHH
Confidence 0001 11122 33 44455554332 2222 222222 24889999999999765332222
Q ss_pred HH----HHHHHcCCcEEEEcc
Q 030693 138 QV----TFHRKKNLQYYEISA 154 (173)
Q Consensus 138 ~~----~~~~~~~~~~~~~S~ 154 (173)
.. +.....+++++.+|.
T Consensus 197 l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHcCCcEEecCC
Confidence 22 223345677777764
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-10 Score=87.44 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=84.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh------CCcc----cccccc-----------eeEEEEEEEEE-------------e
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT------GEFE----KKYEPT-----------IGVEVHPLDFF-------------T 57 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~------~~~~----~~~~~~-----------~~~~~~~~~~~-------------~ 57 (173)
+...|+++|.+|+||||+++.|.. .+.. ..+.+. .+......... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999772 2110 000000 01111110000 0
Q ss_pred cCcEEEEEEEeCCCccccc-Ccchh---h--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCE-EEEEeCCCCc
Q 030693 58 NCGKIRFYCWDTAGQEKFG-GLRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVK 130 (173)
Q Consensus 58 ~~~~~~~~~~D~~G~~~~~-~~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~ 130 (173)
....+.+.++||||..... .++.. + ...+|.+++|+|+..... .......+.+ .+|+ .+|+||+|..
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~---~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD---KVDVASVIVTKLDGH 253 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH---HHCCCCEEEECTTSC
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh---hcCceEEEEeCCccc
Confidence 0135689999999975322 11111 1 227899999999987532 2222233333 2564 7889999987
Q ss_pred cccccHHHHHHHHHcCCcE------------------EEEccCCCCC-hHHHHHHHHH
Q 030693 131 NRQVKAKQVTFHRKKNLQY------------------YEISAKSNYN-FEKPFLYLAR 169 (173)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-i~~~~~~i~~ 169 (173)
.+... ........+.++ +.+|+..|.| +.++++++.+
T Consensus 254 ~~~g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 254 AKGGG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp CCCTH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred cchHH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 54321 222333333332 3478889999 9999988764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=78.19 Aligned_cols=115 Identities=19% Similarity=0.314 Sum_probs=60.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccc------ccee-EEEEEEEEEecCc--EEEEEEEeCCCcccccC---cc-
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE------PTIG-VEVHPLDFFTNCG--KIRFYCWDTAGQEKFGG---LR- 79 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~------~~~~-~~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~---~~- 79 (173)
.++++++|++|+|||||++.+.+-..+.... +... .....+.+..... ...++++|++|...... .+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999976532221100 0000 0011122222222 23678999998432110 00
Q ss_pred ------------------------hhhccCCCEEEEEEECCChhhhhcH-HHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 80 ------------------------DGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 80 ------------------------~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
+..+..+++.++++|.... .+... ...+..+.+ .+++++|++|+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh---cCcEEEEEeccccCC
Confidence 1112346888888886522 11222 223334433 489999999999765
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-08 Score=75.69 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=81.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccce-eEE--EEEEEEEecCcEEEEEEEeCCCcccccCcchhh-----cc
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-GVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----YI 84 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~-----~~ 84 (173)
...++++|++|+|||||+|.+.+-..+....-+. +.. ....... ......+++||++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999977633222111111 111 1111111 1111257899999864322222222 23
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc--c-------ccccHHH----HHHH----HHc--
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N-------RQVKAKQ----VTFH----RKK-- 145 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~-------~~~~~~~----~~~~----~~~-- 145 (173)
..+..++ ++...... +. ......+... +.|+++|.||.|+. + .....+. .++. .+.
T Consensus 148 ~~~~~~~-lS~G~~~k-qr-v~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK-ND-IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp GCSEEEE-EESSCCCH-HH-HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCeEE-eCCCCccH-HH-HHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455554 77652111 11 1122333332 78999999999963 1 1111111 2222 122
Q ss_pred -CCcEEEEcc--CCCCChHHHHHHHHHHh
Q 030693 146 -NLQYYEISA--KSNYNFEKPFLYLARKL 171 (173)
Q Consensus 146 -~~~~~~~S~--~~~~~i~~~~~~i~~~i 171 (173)
....+.+|+ ..+.|++++.+.+.+.+
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 236788999 56667999999987654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=8.5e-09 Score=73.91 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=35.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
...++++++|.+|+|||||+|++.+... .......|+|.....+..+ ..+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVG---KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEET---TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeEEEEeC---CCEEEEECcCcCC
Confidence 3468999999999999999999775542 2334455555544333332 2578999999753
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.4e-09 Score=74.15 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 75 (173)
++++++|.+|+|||||+|++.+.... ...++.|++.....+..+ ..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLE---NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeC---CCEEEEECCCcccC
Confidence 69999999999999999997765542 334555655544333322 25789999997643
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.9e-09 Score=73.61 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=62.7
Q ss_pred CCCccc-ccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCC
Q 030693 69 TAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (173)
Q Consensus 69 ~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (173)
.||+.. ........+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+........++....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~ 76 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S-RKETIILLNKVDIADEKTTKKWVEFFKKQGK 76 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence 467653 2234556778999999999999887654311 11 1 1 7899999999999875332233344555677
Q ss_pred cEEEEccCCCCChHHHHHHHHH
Q 030693 148 QYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 148 ~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
++ .+||+++.|++++++.+.+
T Consensus 77 ~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 77 RV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp CE-EECCTTSCHHHHHHHHCCC
T ss_pred eE-EEECCCCcCHHHHHHHHHH
Confidence 88 9999999999999887643
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.1e-07 Score=69.42 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=54.8
Q ss_pred EEEEEEeCCCcccccC-cch-----hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030693 62 IRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
+.+.++||+|...... ... .....+|.+++|+|+.... ........+.+. -.+..+|+||.|...+..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~--~~i~gVIlTKlD~~~~gG- 256 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEA--TPIGSIIVTKLDGSAKGG- 256 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHS--CTTEEEEEECCSSCSSHH-
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhh--CCCeEEEEECCCCccccc-
Confidence 7899999999532211 111 1123578999999998643 223333344332 234568899999875432
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 136 AKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
.........+.++..++. |++++
T Consensus 257 -~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 257 -GALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp -HHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred -HHHHHHHHHCCCEEEEEc--CCChH
Confidence 233455567888877765 66554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.3e-08 Score=70.88 Aligned_cols=90 Identities=13% Similarity=0.064 Sum_probs=63.0
Q ss_pred ccCcchhhccCCCEEEEEEECCChhh-hhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc----cHHHHHHHHHcCCcE
Q 030693 75 FGGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQY 149 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~ 149 (173)
...+.+..+.++|.+++|+|+.+|.. ...+..++..... .++|.++|+||+|+.+... ..+........+.+.
T Consensus 76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 34455667889999999999997653 2333333333322 4889999999999987543 223334555668899
Q ss_pred EEEccCCCCChHHHHHH
Q 030693 150 YEISAKSNYNFEKPFLY 166 (173)
Q Consensus 150 ~~~S~~~~~~i~~~~~~ 166 (173)
+.+|+.++.|++++++.
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999998877653
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-08 Score=75.79 Aligned_cols=85 Identities=16% Similarity=0.063 Sum_probs=49.3
Q ss_pred cEEEEEEEeCCCcccccC-cch-----hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCC-C-EEEEEeCCCCcc
Q 030693 60 GKIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKN 131 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~ 131 (173)
..+.+.++||||...... +.. ..+..+|.+++|+|+.... +.......+ .+.. | ..+|+||+|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~---~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF---KEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH---HTTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH---hhcccCCeEEEEeCCCCcc
Confidence 346789999999653211 111 1122689999999987553 222222222 2345 6 788999999864
Q ss_pred ccccHHHHHHHHHcCCcEEEE
Q 030693 132 RQVKAKQVTFHRKKNLQYYEI 152 (173)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ 152 (173)
+.. .........+.++..+
T Consensus 253 ~~g--~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 KGG--GALSAVAETKAPIKFI 271 (432)
T ss_dssp TTH--HHHHHHHHSSCCEEEE
T ss_pred chH--HHHHHHHHHCCCEEEe
Confidence 321 2334555566665544
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-07 Score=71.98 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=39.8
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc-ceeEEEEEEEE--Ee-cCcEEEEEEEeCCCccc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVEVHPLDF--FT-NCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~D~~G~~~ 74 (173)
+.+.++|+|+|.+|+|||||+|+|++....-.... +.+.+...+.. .. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 34568899999999999999999876542111111 11222222211 11 12345789999999653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.41 E-value=6.1e-07 Score=64.70 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=57.0
Q ss_pred cEEEEEEEeCCCccc--cc-Ccch-----hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCc
Q 030693 60 GKIRFYCWDTAGQEK--FG-GLRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK 130 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~--~~-~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 130 (173)
..+.+.++||||... .. .+.. .....+|.+++|+|+... .........+.. ..| ..+|+||.|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCC
Confidence 346799999999765 21 1111 123468999999998643 233222333332 456 67889999976
Q ss_pred cccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
.+. ..........+.++..++ .|+++++
T Consensus 253 ~~~--g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 AKG--GGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp TTH--HHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred cch--HHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 432 123456667788887776 5666543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.36 E-value=9.2e-07 Score=66.81 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCccc--ccC-cchh-----hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030693 61 KIRFYCWDTAGQEK--FGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 61 ~~~~~~~D~~G~~~--~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
.+.+.++||||... ... .... .....+.+++|+|+..... .......+.+. -.+..+|+||.|...+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc--cCCcEEEEeccccccc
Confidence 56788999999543 111 1111 1124689999999986532 22333444433 3457888999998753
Q ss_pred cccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
.. .........+.++..++. |++++
T Consensus 254 ~G--~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 254 GG--GALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp HH--HHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred ch--HHHHHHHHHCCCEEEEEC--CCChH
Confidence 32 234555567888877775 66653
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-06 Score=63.11 Aligned_cols=83 Identities=10% Similarity=0.068 Sum_probs=56.0
Q ss_pred hccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH---HHHHHHHHcCCcEEEEccCCC
Q 030693 82 YYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEISAKSN 157 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~S~~~~ 157 (173)
...++|.+++|... +|. +...+..++...... ++|.++|+||+|+.+..... +........+++++.+|+.++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 36789999988665 453 333333444333333 78889999999998754311 122344456889999999999
Q ss_pred CChHHHHHHH
Q 030693 158 YNFEKPFLYL 167 (173)
Q Consensus 158 ~~i~~~~~~i 167 (173)
.|++++...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999887654
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.8e-08 Score=76.14 Aligned_cols=114 Identities=13% Similarity=-0.047 Sum_probs=63.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc--ccCcc--------h
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLR--------D 80 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~--------~ 80 (173)
....+|+++|.+|+||||+.++|..... ....++.+...........+......+||..|.+. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999764322 11122222111110011111223346788888732 23333 4
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.++....+.++|+|.++.. ......|...+.+. ..+++++-..++
T Consensus 116 ~~l~~~~G~~vV~D~tn~~-~~~R~~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT-RERRAMIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS-HHHHHHHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHHhCCCCEEEEeCCCCC-HHHHHHHHHHHHhc--CCcEEEEEEECC
Confidence 5666678889999999873 34445566655554 444544443333
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.14 E-value=6.9e-06 Score=64.83 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++|+|+.|||||||++.+.+-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999997654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.6e-05 Score=57.00 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=52.4
Q ss_pred EEEEEEeCCCcccccCc-chhh-----ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccccc
Q 030693 62 IRFYCWDTAGQEKFGGL-RDGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~-~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (173)
+.+.++|++|....... .... .-..|-.+++.|.... +.+......+.+.. + .-.+++||.|...+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~-~-it~iilTKlD~~a~~-- 284 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV-K-IDGIILTKLDADARG-- 284 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS-C-CCEEEEECGGGCSCC--
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc-C-CCEEEEeCcCCccch--
Confidence 45667999996433221 1111 1246888999997654 23333344444321 2 236778999974432
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 136 AKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
-.........+.++..++ +|++++
T Consensus 285 G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 285 GAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp HHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred hHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 224466677788888776 666654
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00012 Score=55.50 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=46.7
Q ss_pred EEEEEEEeCCCcccccC-cch-----hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCcccc
Q 030693 61 KIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ 133 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 133 (173)
.+.+.++||||...... ... ......+.+++|+|+... .........+.. ..+ .-+|+||.|...+.
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g---~~~~~~~~~f~~---~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG---QDAANTAKAFNE---ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC---TTHHHHHHHHHH---HSCCCCEEEECTTSSSCC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh---HHHHHHHHHHhc---cCCCeEEEEecCCCCccH
Confidence 56899999999643321 111 123468899999998754 223333333332 344 34678999986443
Q ss_pred ccHHHHHHHHHcCCcEEE
Q 030693 134 VKAKQVTFHRKKNLQYYE 151 (173)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (173)
. .........+.++..
T Consensus 257 g--~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 257 G--AALSIRHITGKPIKF 272 (433)
T ss_dssp T--HHHHHHHHHCCCEEE
T ss_pred H--HHHHHHHHHCCCeEE
Confidence 1 233444455555433
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7.1e-06 Score=55.57 Aligned_cols=84 Identities=7% Similarity=-0.064 Sum_probs=54.7
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhh---cCCCCEEEEEeCCCCccccccHH
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK 137 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~ 137 (173)
.+.+.++|+|+.. .......+..+|.++++...+... ..+...++.+.+. .++.++.+|+|+.|.... ...+
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~ 149 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNV 149 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHH
Confidence 4788999999765 344556677899999999877544 5555555555443 346788999999996443 2223
Q ss_pred HHHHHHHcCCcE
Q 030693 138 QVTFHRKKNLQY 149 (173)
Q Consensus 138 ~~~~~~~~~~~~ 149 (173)
..+.....+.++
T Consensus 150 ~~~~l~~~~~~v 161 (206)
T 4dzz_A 150 LKESIKDTGVKA 161 (206)
T ss_dssp HHHHHHHHTCCB
T ss_pred HHHHHHHcCCce
Confidence 344444444443
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.84 E-value=3.4e-06 Score=56.62 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|+|+||+|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999997644
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.2e-05 Score=58.69 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+-.-|.|+|++++|||+|+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456789999999999999999875
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.69 E-value=6.5e-05 Score=51.25 Aligned_cols=85 Identities=11% Similarity=-0.024 Sum_probs=55.0
Q ss_pred cEEEEEEEeCCCc-ccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc-ccccHH
Q 030693 60 GKIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK 137 (173)
Q Consensus 60 ~~~~~~~~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~ 137 (173)
..+.+.++|+|+. .. ......+..+|.++++...+ ..+...+...++.+.... +.++.+|+|+.|... .. ..+
T Consensus 66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~-~~~ 140 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKD-GDE 140 (209)
T ss_dssp GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCH-HHH
T ss_pred hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchH-HHH
Confidence 3478999999876 32 34455677899999998865 455566666666665532 567889999998764 22 223
Q ss_pred HHHHHHHcCCcE
Q 030693 138 QVTFHRKKNLQY 149 (173)
Q Consensus 138 ~~~~~~~~~~~~ 149 (173)
..+..++.+.++
T Consensus 141 ~~~~l~~~g~~v 152 (209)
T 3cwq_A 141 ARQLLTTAGLPL 152 (209)
T ss_dssp HHHHHHHTTCCB
T ss_pred HHHHHHHcCCch
Confidence 334444455443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.65 E-value=3.3e-05 Score=51.44 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+++++|++|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.58 E-value=2.2e-05 Score=53.15 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
+.--|+++|++|+|||||++.|+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999997643
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=5e-05 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=6.6e-05 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++|||||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999765
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.53 E-value=7.8e-05 Score=56.26 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=48.7
Q ss_pred cEEEEEEEeCCCcccccC-cch-----hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccc
Q 030693 60 GKIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (173)
Q Consensus 60 ~~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 132 (173)
..+.+.++||||...... ... .....++.+++|+|+... ++.......+.. ..+ ..+|+||.|...+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~---~l~i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDE---KVGVTGLVLTKLDGDAR 252 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHH---HTCCCEEEEESGGGCSS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHh---cCCceEEEEeCcCCccc
Confidence 346789999998643211 111 112258889999998643 223233333333 233 4567899997543
Q ss_pred cccHHHHHHHHHcCCcEEEEc
Q 030693 133 QVKAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S 153 (173)
.. .........+.++..+.
T Consensus 253 ~g--~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 253 GG--AALSARHVTGKPIYFAG 271 (425)
T ss_dssp CH--HHHHHHHHHCCCEEEEE
T ss_pred HH--HHHHHHHHHCCCEEEEe
Confidence 22 23445566677766654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.52 E-value=9.2e-05 Score=54.63 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
.++++|++|+|||||+|.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999977543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.49 E-value=2.3e-05 Score=56.69 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
-.++++|++|+|||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999996643
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.46 E-value=7.2e-05 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
-.++++|++||||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999996543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.45 E-value=7.8e-05 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999986643
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00031 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999977
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=7.7e-05 Score=49.21 Aligned_cols=20 Identities=45% Similarity=0.989 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999643
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00012 Score=49.77 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+...|+|+|++|||||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998553
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0001 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 35889999999999999996653
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0001 Score=50.57 Aligned_cols=21 Identities=48% Similarity=0.770 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|++|+|||||++.+.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998665
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=50.01 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998654
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00017 Score=48.70 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+.....|+++|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999998653
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00021 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~ 34 (173)
+...|++.|.+||||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999998865
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00011 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|++||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=49.44 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-|+++|++||||||+++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999764
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00019 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
--|+++|++||||||+++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999997654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|++||||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00017 Score=47.22 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00017 Score=47.24 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 030693 14 FKLVIVGDGGTGKTTFVKRH 33 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l 33 (173)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999997
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00018 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
.-.|+++|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999866
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00019 Score=47.27 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999765
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00017 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998643
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00027 Score=47.05 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=21.8
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...+...|+++|.+|+||||+++.+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 334557899999999999999998653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00027 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.|+++|++||||||+.+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998653
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=49.05 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0002 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+++|+.|||||||++.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00021 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~ 37 (173)
..|+++|++||||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999976543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=48.10 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|||||||++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999998543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=48.48 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|+++|++||||||+++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00023 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998653
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0002 Score=46.69 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999876543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00027 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|+++|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999865
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00027 Score=46.60 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999654
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00027 Score=47.55 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=22.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
+.+...|+|+|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999987654
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00029 Score=47.71 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0002 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998543
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00025 Score=48.27 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
++|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998653
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00033 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
..+|+++|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999986543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00025 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998765
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00026 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|+++|++||||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00031 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+..+|+++|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998753
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0003 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00025 Score=49.47 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998554
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00028 Score=47.47 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00028 Score=48.40 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|++||||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00027 Score=47.04 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00027 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
=.++|+|++|+|||||++.+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999865
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00026 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999998654
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00028 Score=49.12 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998554
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00027 Score=48.44 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998553
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00026 Score=50.42 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|||||||++.+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999998554
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00028 Score=48.09 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00031 Score=46.59 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00027 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
=.++++|++||||||+++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999998664
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00027 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998553
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00029 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.|+++|++|+||||+.+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998653
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00031 Score=49.05 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00035 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998754
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998554
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00031 Score=49.20 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998554
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00028 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998553
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00034 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998554
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00038 Score=47.66 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998653
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00034 Score=46.33 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.-++++|++|+|||||+++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999997643
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00031 Score=49.65 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 478999999999999998553
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00063 Score=49.30 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=20.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+..-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3457799999999999999998654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00032 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998554
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00034 Score=49.30 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998554
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00035 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0003 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++|+|||||++.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0003 Score=48.00 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999986654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00034 Score=49.06 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999998543
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00047 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
...|++.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999996643
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00037 Score=49.18 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998554
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00039 Score=47.85 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
..|++.|.+||||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999865
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00035 Score=45.99 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998653
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00058 Score=46.22 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+++|++|+||||+++.|..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998654
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00038 Score=49.34 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0005 Score=45.43 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|+++|++|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4578999999999999999865
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00045 Score=45.04 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00047 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|++.|.+||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999865
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00048 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...-|++.|++||||||+++.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999753
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00028 Score=46.67 Aligned_cols=22 Identities=32% Similarity=0.185 Sum_probs=15.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|++.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999865
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00042 Score=49.45 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999998554
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00041 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|+.|+|||||++.+.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998554
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00038 Score=47.69 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999765
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0002 Score=47.34 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|++|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0004 Score=48.85 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998554
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00023 Score=49.18 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
-++++|++||||||+++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999976
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0006 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998653
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00055 Score=47.72 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+|+|+.|||||||++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00038 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999966543
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00044 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00097 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999865
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00053 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998653
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00042 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999998554
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00076 Score=48.37 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
.+...|+|+|++|||||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999998754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00039 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-+++|+|++|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998654
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00051 Score=47.19 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998653
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00065 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|+|+|++||||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999866
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00052 Score=48.52 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999985543
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0006 Score=47.73 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+.+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998654
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0018 Score=49.13 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=38.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh------------------CCcc---cccccceeEEEEEEEEEe---cCcEEEEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT------------------GEFE---KKYEPTIGVEVHPLDFFT---NCGKIRFYCW 67 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~------------------~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 67 (173)
+-.=|.|+|+.++|||+|+|.++. ..|. .....|.|+-.....+.. ++....+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 345677999999999999996541 1221 111224444333222212 4567889999
Q ss_pred eCCCccc
Q 030693 68 DTAGQEK 74 (173)
Q Consensus 68 D~~G~~~ 74 (173)
||.|...
T Consensus 146 DTEG~~d 152 (457)
T 4ido_A 146 DTQGTFD 152 (457)
T ss_dssp EECCBTC
T ss_pred eccCCCC
Confidence 9999543
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00047 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998653
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00052 Score=48.18 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998653
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00067 Score=46.91 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...+|+++|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998653
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00035 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|++|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 589999999999999998553
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00063 Score=45.30 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.001 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
...+-|+++|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999998764
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00052 Score=43.87 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
...|++.|++|+|||++++.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999986543
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00094 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00089 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+...|+++|++|+||||+++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998653
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0007 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0006 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|++||||||+++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00073 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
....|+++|++||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00064 Score=48.32 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999654
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00067 Score=48.66 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998554
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00075 Score=44.13 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.001 Score=48.12 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+...|+|+|++|||||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998654
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00079 Score=44.34 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999764
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00026 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998653
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0012 Score=45.32 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|+++|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00084 Score=44.28 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00084 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
+..+.|++.|++|+||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999865
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00051 Score=44.24 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++|+|||+|++.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998654
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00076 Score=44.69 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988653
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0009 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00095 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.001 Score=43.87 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.001 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998754
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00073 Score=49.89 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 378999999999999998554
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00072 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999986643
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00078 Score=49.83 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 378999999999999998554
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0008 Score=47.03 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|++|+|||||++.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998654
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00072 Score=50.02 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
-.++++|++|+|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999996643
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00081 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++||||||+++.+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998664
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0012 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.....|+++|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999998654
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00083 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 378999999999999998554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00083 Score=48.50 Aligned_cols=85 Identities=9% Similarity=0.026 Sum_probs=46.9
Q ss_pred EEEEEEeCCCcccccC------------cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030693 62 IRFYCWDTAGQEKFGG------------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (173)
..+.+.|++|...... +.+......+.++++.|+..... +...+..+.+.. +. .++++||.|.
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-~~-t~iivTh~d~ 259 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-GL-TGVIVTKLDG 259 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH-CC-SEEEEECTTS
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-CC-cEEEEECCcc
Confidence 3456889998532211 11122345677888999876532 233333443321 23 3566899987
Q ss_pred ccccccHHHHHHHHHcCCcEEEEc
Q 030693 130 KNRQVKAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S 153 (173)
..+.. .........+.++..+.
T Consensus 260 ~a~gg--~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TAKGG--VLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SCCCT--THHHHHHHHCCCEEEEE
T ss_pred ccccc--HHHHHHHHHCCCeEEEe
Confidence 54322 23455666777776664
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.002 Score=47.08 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
+++.|++|+||||+++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998654
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0009 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 378999999999999998654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00093 Score=49.71 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 378999999999999998554
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00094 Score=49.39 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 378999999999999998654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00096 Score=48.14 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
--++++|+.|+||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.001 Score=45.54 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0011 Score=43.87 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
-.+|+|+.|+|||||++.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00095 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++|+|++||||||+++.+++
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999764
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=49.37 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 478999999999999998654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.001 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHc
Confidence 378999999999999998554
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0015 Score=45.04 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..-|++.|+.||||||+++.+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999998654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0012 Score=46.86 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|++|+|||||++.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999998654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=51.24 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++||||||+++.+++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999664
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=48.17 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=46.27 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|+++|++|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998653
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=43.66 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||+++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00086 Score=49.34 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCccHHHHHHHHHc
Confidence 478999999999999998654
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0019 Score=43.87 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
...|+++|.+|+||||+.+.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999854
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0022 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+..-|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998653
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0013 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999986643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0014 Score=45.87 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+++.|++|+|||++++.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4599999999999999998653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0014 Score=44.47 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999776
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0015 Score=44.77 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.+++.|++|+|||+++..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998653
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0014 Score=48.98 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 489999999999999998654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999997763
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=48.08 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++|+|+.|||||||++.+++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678899999999999998754
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0014 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++|+|+.|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999986543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0019 Score=41.55 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
.+|+|+.|+|||||++++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4788999999999999864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=48.09 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.--++++|+.|+||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999998654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.002 Score=43.30 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988654
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.002 Score=44.52 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=19.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...+++.++|++||||||+..+|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988654
|
| >3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0057 Score=42.12 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=42.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEE-eCCCc-c----cccCcch-hhcc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW-DTAGQ-E----KFGGLRD-GYYI 84 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~G~-~----~~~~~~~-~~~~ 84 (173)
+++=|+.-|+++.||+.|++++..... ...... ..++..-......+-+| |.--. . .|.+--. ....
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~~~-~~~~i~-----k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~ 101 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHCSS-TGISIV-----KDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRN 101 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCCCC-CSSCEE-----EEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHH
T ss_pred CceEEEecCcccccHHHHHHHHhcccc-cccccc-----cCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHH
Confidence 334444449999999999999665431 111111 12222323344555554 43211 1 1111111 1112
Q ss_pred CCCEEEEEEECCChhhhhcHH
Q 030693 85 HGQCAIIMFDVTARLTYKNVP 105 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~ 105 (173)
...++|+|++...++..+.+.
T Consensus 102 viggII~~f~~p~~~~~~~i~ 122 (233)
T 3uc9_A 102 VMAGIILITDIRQTKPQELLH 122 (233)
T ss_dssp TEEEEEEEECHHHHCGGGTHH
T ss_pred hcceEEEEEeCCCcchHHHHH
Confidence 347889999866555444443
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0031 Score=47.53 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..-|+++|.+||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00083 Score=49.54 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999998554
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=49.68 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=48.0
Q ss_pred EEEEEEeCCCcccccC-cc------hhhc-----cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030693 62 IRFYCWDTAGQEKFGG-LR------DGYY-----IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~-~~------~~~~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (173)
+.+.++||+|...... +. .... ...+-++++.|++... +.......+.... ++. .+++||.|-
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---~al~~ak~f~~~~-~it-gvIlTKLD~ 450 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---NAVSQAKLFHEAV-GLT-GITLTKLDG 450 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---HHHHHHHHHHHHT-CCS-EEEEECGGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---HHHHHHHHHHhhc-CCC-EEEEEcCCC
Confidence 5678899999542211 10 0111 1246788899977552 2222233343321 333 456899996
Q ss_pred ccccccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
..+. -....++...+.++..+. +|++++
T Consensus 451 takg--G~~lsi~~~~~~PI~fig--~Ge~vd 478 (503)
T 2yhs_A 451 TAKG--GVIFSVADQFGIPIRYIG--VGERIE 478 (503)
T ss_dssp CSCC--THHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred cccc--cHHHHHHHHHCCCEEEEe--cCCChh
Confidence 4332 234566667777776653 444443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0021 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
+++++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999866543
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0022 Score=42.61 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999997754
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0027 Score=43.87 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=20.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+...|+++|++|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999988653
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0028 Score=42.59 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|.+.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0033 Score=45.08 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=19.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~ 34 (173)
....+++.|++|+|||++++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998644
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0023 Score=47.61 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998663
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=43.60 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=50.35 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999998554
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0025 Score=42.96 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998654
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0024 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45789999999999999998654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0027 Score=49.48 Aligned_cols=21 Identities=48% Similarity=0.495 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0025 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998764
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0037 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..-+++.|+||+|||+|++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35677889999999999998653
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=43.31 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|+||+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999888653
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0028 Score=44.91 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999654
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0015 Score=46.78 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=16.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998653
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0036 Score=43.66 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0029 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~ 37 (173)
..|+++|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999976543
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0029 Score=43.05 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|++.|++|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0028 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999998664
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0029 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998654
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0023 Score=45.02 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~ 34 (173)
+...|++.|..||||||+++.|.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999854
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0031 Score=47.88 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999866543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0028 Score=49.40 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|+.|+|||||++.+.+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.003 Score=46.78 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999865
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0036 Score=49.23 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0031 Score=43.53 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877654
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0049 Score=44.15 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998654
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0048 Score=44.57 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-|+|+|++|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999999653
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0052 Score=43.31 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.....+++.|++|+|||+++..+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999998654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0026 Score=50.18 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999998554
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0034 Score=49.58 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 589999999999999998654
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0035 Score=45.37 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999998654
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0052 Score=44.68 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0038 Score=44.89 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=46.8
Q ss_pred EEEEEEEeCCCcccccC-cc---hhhcc--CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGG-LR---DGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~---~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
.+.+.++||+|...... .. ...+. ..+..++|+|.+.. ...+..+...+... + ..-++.||.|......
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l--~-~~giVltk~D~~~~~g 256 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSV--P-VNQYIFTKIDETTSLG 256 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSS--C-CCEEEEECTTTCSCCH
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcC--C-CCEEEEeCCCcccchh
Confidence 46789999999654321 11 11222 35778889987643 12233322222211 2 2345679999865322
Q ss_pred cHHHHHHHHHcCCcEEEEc
Q 030693 135 KAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (173)
.....+...+.++..++
T Consensus 257 --~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 257 --SVFNILAESKIGVGFMT 273 (296)
T ss_dssp --HHHHHHHTCSCCCSEEC
T ss_pred --HHHHHHHHHCcCEEEEE
Confidence 44566667777765554
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0023 Score=50.31 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 589999999999999987443
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.005 Score=40.63 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~ 37 (173)
.-+++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999987643
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.004 Score=45.57 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0041 Score=49.18 Aligned_cols=21 Identities=52% Similarity=0.510 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 589999999999999998654
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0043 Score=44.32 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.003 Score=49.73 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999997543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.004 Score=45.76 Aligned_cols=22 Identities=45% Similarity=0.516 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||||++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998664
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0041 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999997654
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0023 Score=40.67 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
..|++.|++|+|||++++.+.
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGC
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 469999999999999998843
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0058 Score=42.30 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
..|++.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999998653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0049 Score=48.04 Aligned_cols=22 Identities=50% Similarity=0.557 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++|+|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999986653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0048 Score=44.57 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCcccccC-cc------hhh-----ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 61 KIRFYCWDTAGQEKFGG-LR------DGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~------~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.+.+.++|+||...... +. ... -...+.+++|+|..... +.+. ....+.+. .++ .-+|+||.|
T Consensus 186 ~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~-~a~~~~~~-~~i-~gvVlTk~D 260 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLV-QAKIFKEA-VNV-TGIILTKLD 260 (306)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHH-HHHHHHHH-SCC-CEEEEECGG
T ss_pred CCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHH-HHHHHHhc-CCC-CEEEEeCCC
Confidence 35688999999532111 00 001 12478889999987432 2222 12233332 132 345679999
Q ss_pred CccccccHHHHHHHHHcCCcEEEEcc
Q 030693 129 VKNRQVKAKQVTFHRKKNLQYYEISA 154 (173)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~S~ 154 (173)
...+.. ...+.....+.++..+..
T Consensus 261 ~~~~gG--~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAKGG--ITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSCTT--HHHHHHHHHCCCEEEEEC
T ss_pred CccchH--HHHHHHHHHCCCEEEEeC
Confidence 754332 256777778888777644
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0065 Score=44.00 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.-|+|+|++|||||+|...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999997643
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0044 Score=48.29 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0046 Score=44.92 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.+++.|++|+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35799999999999999999664
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0071 Score=41.63 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=20.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
.+..-|++.|.+|+||||+++.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445679999999999999999855
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0051 Score=48.63 Aligned_cols=22 Identities=50% Similarity=0.557 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
.++++|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999986653
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0076 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
..+|+++|++|+||||+.+.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999998654
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0075 Score=43.72 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998653
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0054 Score=41.50 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=16.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5778999999999999853
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0048 Score=46.65 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
--|++.|+||+|||+|++++..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0054 Score=45.27 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|.|++|+|||++++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998664
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0057 Score=44.73 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|+|+|++|+|||+|...|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999654
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0065 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.|++.|+||+|||+|++++..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 35799999999999999999654
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0051 Score=44.90 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
+++.|++|+||||+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999986643
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.02 Score=41.36 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=15.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
+++.|++|+|||++++.+.
T Consensus 51 ~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp EEECSSTTSSHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHH
Confidence 4555669999999999965
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0073 Score=41.23 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=19.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
++..-|++.|.+|+||||+++.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 345678999999999999999864
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0065 Score=42.18 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
++..-|++.|.+|+||||+++.+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445679999999999999999864
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0055 Score=47.54 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 030693 15 KLVIVGDGGTGKTTFVKRH 33 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l 33 (173)
-++|+|++|+|||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999985
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.006 Score=48.21 Aligned_cols=21 Identities=48% Similarity=0.754 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
++++|+.|+|||||++.+.+-
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 699999999999999986543
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.008 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.|++.|+||+|||+|++++..
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999999654
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0064 Score=44.30 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998654
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0087 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
....+++.|++|+|||++++.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998653
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0026 Score=44.72 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999998654
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0067 Score=45.42 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|++.|+||+|||+|++++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 5689999999999999999654
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0071 Score=44.44 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998653
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0063 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-+++++|++|+|||++++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0056 Score=45.06 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0051 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...++++|++|||||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 35799999999999999998653
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0079 Score=43.43 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 173 | ||||
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 4e-38 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 9e-37 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 2e-36 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 8e-36 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 9e-36 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 5e-35 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 3e-34 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 1e-33 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 9e-33 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 1e-32 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-32 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 2e-32 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 4e-32 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 8e-32 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 2e-31 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 3e-31 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 6e-31 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 3e-30 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 5e-30 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 9e-30 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-28 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 3e-28 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 9e-28 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 1e-26 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 3e-26 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 4e-26 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 4e-26 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 5e-26 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 2e-25 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 2e-25 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 3e-25 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 4e-25 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 7e-25 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-23 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 2e-23 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 2e-23 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 5e-22 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 8e-21 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 2e-20 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-19 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 3e-19 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 3e-19 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 5e-19 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 7e-19 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-18 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 7e-18 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 2e-17 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 4e-17 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-16 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 3e-16 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 5e-15 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 8e-14 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 1e-13 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 4e-13 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-12 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 3e-11 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 9e-11 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 2e-07 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 2e-07 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 3e-07 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 5e-07 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 1e-06 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 2e-06 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 1e-05 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 2e-05 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 4e-05 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 2e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.001 |
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 126 bits (317), Expect = 4e-38
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 2/160 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++++GD G GK+ + R + +F + TIG++ N K++ WDTAGQE
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR 132
+F + YY I+++D+T T+ N+ + + ++L GNK D++ R
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122
Query: 133 QVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
V A Q K+ + + E SAK++ N + F LA+ +
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 123 bits (309), Expect = 9e-37
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
+ K++I+G+ G GK++ + R F+ + TIGV+ + K + WDTAG
Sbjct: 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDV 129
QE+F L YY Q I+++DVT R T+ + W +L C +I +L GNK+D
Sbjct: 66 QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 125
Query: 130 KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+NR+V + + + F RK ++ + E SAK+ + F L K+
Sbjct: 126 ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 122 bits (307), Expect = 2e-36
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
DY FKL+++G+ G GK+ + R + Y TIGV+ + ++ WDT
Sbjct: 4 DY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
AGQE+F + YY II++DVT + ++ V W +++ R + +L GNK D
Sbjct: 63 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122
Query: 129 VKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171
+K+++V V + + E SA + N E FL +AR++
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 167
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (302), Expect = 8e-36
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
D+ FK+V++G+ G GKT V+R G F TIGV+ N K++ WDT
Sbjct: 3 DF-LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
AGQE+F + YY I+ +D+T +++ +P + VL GNK+D
Sbjct: 62 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121
Query: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ R+ ++Q F +++ Y E SAK + N EK FL LA +L
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 120 bits (302), Expect = 9e-36
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYC 66
+T DY FKL+++GD G GKT + R F + TIG++ + +I+
Sbjct: 1 KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 59
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGN 125
WDTAGQE+F + YY ++++D+T ++ N+ W R++ ++ ++ GN
Sbjct: 60 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119
Query: 126 KVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K DV +++ +K+ +++ E SAK+N N E F LAR +
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (296), Expect = 5e-35
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKLV +G+ GKT+ + R + F+ Y+ TIG++ + IR WDTAGQE
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132
+F L Y A++++D+T +++ W D+ ++ I+L GNK D+ ++
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120
Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
+ + + ++ N+ + E SAK+ YN ++ F +A L G
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 116 bits (291), Expect = 3e-34
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
DY FK+V++GD G GK+ + R EF + + TIGVE + I+ WDT
Sbjct: 2 DY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
AGQE++ + YY A++++D+ LTY+NV W ++L NI I+L GNK D
Sbjct: 61 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120
Query: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+++ + F K NL + E SA + N E+ F + ++
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 115 bits (288), Expect = 1e-33
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW 67
T D+ FK +++G+ GTGK+ + + + +F+ TIGVE ++ W
Sbjct: 1 TYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 59
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN- 125
DTAGQE+F + YY A++++D+T+R TY + W D +NI I+LCGN
Sbjct: 60 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 119
Query: 126 -KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+D + F ++ L + E SA + N E+ F+ ARK+
Sbjct: 120 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 112 bits (281), Expect = 9e-33
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 4/165 (2%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
DY FK++I+G+ GKT+F+ R+ F + T+G++ + N +I+ WDT
Sbjct: 3 DY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN---IPIVLCGNK 126
AGQE++ + YY I+M+D+T ++ V W + + + +V
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 127 VDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ + + +++E SAK N N ++ F L +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (281), Expect = 1e-32
Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK +I+GD G GK+ + + F+ ++ TIGVE + +I+ WDTAGQE
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
F + YY A++++D+T R T+ ++ +W D + N+ I+L GNK D+++R
Sbjct: 64 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123
Query: 133 QVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++ F R+ L + E SAK+ N E+ F+ A+++
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (280), Expect = 1e-32
Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 5/162 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+K+V++G GG GK+ + +TG F +KY+PTI + + + + DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN 131
+F +RD Y +GQ I+++ + + +++++ + + E +P++L GNKVD+++
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122
Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + + E SAKS ++ F + R++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (278), Expect = 2e-32
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
Y FK +I+GD G GK+ + + +F TIGVE + KI+ WDT
Sbjct: 2 SY-IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
AGQE+F + YY A++++D+T R TY ++ +W D + N I+L GNK D
Sbjct: 61 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120
Query: 129 VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ ++ + F + L + E SAK+ N E FL A+K+
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (277), Expect = 4e-32
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 5/166 (3%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
D +FK+++VGD G GKT + R G F + T+G++ + K++ WD
Sbjct: 4 DV-AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 62
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGN-K 126
TAGQE+F + YY ++++DVT + ++ N+ W ++ ++ ++L GN
Sbjct: 63 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 122
Query: 127 VDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R VK + ++ L + E SAK+ N + F +A++L
Sbjct: 123 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (275), Expect = 8e-32
Identities = 134/160 (83%), Positives = 145/160 (90%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G I+F WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
KFGGLRDGYYI QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 124 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 109 bits (272), Expect = 2e-31
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 6/166 (3%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
S KLV++G+ GK++ V R ++ +F + EPTIG N ++F WDTAG
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDV- 129
QE+F L YY + Q A++++DVT ++ + ++I I L GNK+D+
Sbjct: 62 QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML 121
Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + + +K L ++E SAK+ N FL + K+
Sbjct: 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (272), Expect = 3e-31
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 15/176 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV----------HPLDFFTNC 59
DY KL+ +GD G GKTTF+ R+ +F K+ T+G++ P
Sbjct: 3 DY-LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN 117
K+ WDTAGQE+F L ++ ++MFD+T++ ++ NV W L CEN
Sbjct: 62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121
Query: 118 IPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
IVL GNK D+ +++ ++ K + Y+E SA + N EK L +
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (269), Expect = 6e-31
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
FKLV++G+ GK++ V R + G+F + E TIG + ++F WDTAG
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130
QE++ L YY Q AI+++D+T ++ + NI I L GNK D+
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124
Query: 131 NRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
N++ Q +L + E SAK++ N + F+ +A+KL
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (264), Expect = 3e-30
Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 7/165 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK++++GDGG GK++ + R++T +F+ + TIGVE D + + WDTAGQE
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
+F LR +Y C ++ F V +++N+ W ++ + + P V+ GNK+D
Sbjct: 67 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126
Query: 129 VKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ RQV ++ + Y+E SAK N F R++
Sbjct: 127 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 105 bits (263), Expect = 5e-30
Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
K+++VG GG GK+ + + EF + YEPT + +++ DTAG
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAG 61
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
QE + +RD Y+ G+ + +F +T ++ + + RV EN+P +L GNK D+
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
Query: 130 KNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++++ + + N+ Y E SAK+ N +K F L R++
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (261), Expect = 9e-30
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 4/163 (2%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
+KLV+VG GG GK+ + + F +Y+PTI + DTAG
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAG 60
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
QE++ +RD Y G+ + +F + +++++ + + RV +++P+VL GNK D+
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 130 KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R V + R + Y E SAK+ E F L R++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 102 bits (253), Expect = 1e-28
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K+ ++GD G GK++ + R + F+ PTIG +F WDTAG E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN--KVDVK 130
+F L YY AII++D+T T+ + +I + + GN +
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124
Query: 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ + + + E SAK+ N + F+ ++R++
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (251), Expect = 3e-28
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
SFK+V++G+G GKT+ V R+ +F K+ T+G ++ WDTAGQ
Sbjct: 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN 131
E+F L YY AI+++D+T +++ + I + + GNK+D++
Sbjct: 63 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122
Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + Q ++ ++Y SAK N E+ FL L +++
Sbjct: 123 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (248), Expect = 9e-28
Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+KLV++G GG GK+ + + G F +KY+PTI +C + DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-QVEVDCQQCMLEILDTAGTE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
+F +RD Y +GQ +++ +TA+ T+ ++ + RV E++P++L GNK D+++
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 132 RQVKAKQVTFH---RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+V K+ + + N + E SAKS N + F L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 97.1 bits (240), Expect = 1e-26
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K+V+VG+G GK++ ++R+ G F K Y+ TIGV+ N +R WDTAGQ
Sbjct: 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
E+F + YY Q +++F T R +++ + +W + +IP L NK+D+ +
Sbjct: 62 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 121
Query: 133 QV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++ L++Y S K + N + F YLA K
Sbjct: 122 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 96.7 bits (239), Expect = 3e-26
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++I+GD G GKT+ + +++ +F +Y+ TIG + + + + WDTAGQE
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
+F L +Y C +++FDVTA T+K + +W + EN P V+ GNK+D
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 129 VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++NRQV K+ + K N+ Y+E SAK N E+ F +AR
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.2 bits (238), Expect = 4e-26
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K V+VGDG GKT + + T +F +Y PT+ +DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG-EPYTLGLFDTAGQ 61
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN 131
E + LR Y ++ F V + +++NV C P +L G ++D+++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKL 171
+++ +++ K ++Y E SA + + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.8 bits (237), Expect = 4e-26
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 17/175 (9%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K V+VGDG GKT + + T F +Y PT+ + WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK-PVNLGLWDTAGQ 63
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN 131
E + LR Y ++I F + + +++NV + C N PI+L G K+D+++
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 132 RQVKAKQVTFHR---------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ +++ + ++Y E SA + + F R +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.5 bits (236), Expect = 5e-26
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
+ P++KLV+VGDGG GK+ + F Y+PTI + DT
Sbjct: 1 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLK-HTEIDNQWAILDVLDT 59
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV 127
AGQE+F +R+ Y G +I++ VT + ++++V +H+ + RV + + P++L NKV
Sbjct: 60 AGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 119
Query: 128 DVKNRQ--VKAKQVTFHRKKNLQYYEISAKS-NYNFEKPFLYLARKL 171
D+ + + + + K N+ Y E SAK N +K F L R +
Sbjct: 120 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.0 bits (232), Expect = 2e-25
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQ 72
K++I+GD G GKT+ + R++ ++ ++Y+ TIG + + WDTAGQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKV 127
E+F L +Y C ++++DVT +++N+ +W + E P V+ GNK+
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 128 DVKNRQVKAK----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D + + Q ++ + SAK+ N + F +AR
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.6 bits (231), Expect = 2e-25
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK++++GD GKT R G F + E TIGV+ + +I+ WDTAGQE
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62
Query: 74 KFGGL-RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK 130
+F YY + + ++D+T ++ ++P W + + +IP +L GNK D++
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122
Query: 131 NRQVKAKQV--TFHRKKNLQYYEISAKS---NYNFEKPFLYLA 168
+ + F ++ +E SAK+ N + E F+ LA
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.6 bits (231), Expect = 3e-25
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
++LV+VG GG GK+ + + F Y+PTI + + + R DTAGQE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNK--VDV 129
+FG +R+ Y G+ +++F VT R +++ + + R + R + P++L GNK +D
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + + R+ + Y E SAK N ++ F L R +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.1 bits (230), Expect = 4e-25
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 6/161 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++ + G GG GK++ V R + G F + Y PT+ + DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH 61
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNK--VD 128
+F ++ G I+++ +T+R + + + + +C + E+IPI+L GNK
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
++ R + E SAK N+N ++ F L
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.8 bits (229), Expect = 7e-25
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 5/163 (3%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ KLV+VG GG GK+ + + F Y+P + + + R DTAGQ
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTAGQ 64
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
E+FG +R+ Y G +++F + R ++ V + RV ++ P+VL GNK D++
Sbjct: 65 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124
Query: 131 NRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+++ +++ F ++ Y+E SAK N ++ F L R +
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 88.6 bits (218), Expect = 2e-23
Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE T + I F WD GQ+K
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNR 132
L Y+ + Q I + D R + + +++ NK D+ N
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
Query: 133 QVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
A+ + R +N A S + +L+ +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.3 bits (220), Expect = 2e-23
Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 17/173 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K V+VGDG GKT + + F ++Y PT+ + +DTAGQE
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGK-QYLLGLYDTAGQE 68
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
+ LR Y +I F V +++NV + N+P +L G ++D+++
Sbjct: 69 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128
Query: 133 QVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARK 170
++ ++ Y E SA + + F
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.9 bits (219), Expect = 2e-23
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
KLVIVGDG GKT + + +F + Y PT+ E + D + ++ WDTAG E
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
+ LR Y ++ F + + + +N+P + C N+PI+L GNK D++N
Sbjct: 62 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121
Query: 133 QVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKL 171
+ +++ ++ Y E SAK+ + F R
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.5 bits (210), Expect = 5e-22
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 17/174 (9%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGD GKT + F + Y PT+ E + F + +I WDT+G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQ 133
+ +R Y +I FD++ T +V + C N ++L G K D++
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122
Query: 134 VKAKQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKLA 172
+++ HR+ Y E SA + N + ++A
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 81.9 bits (201), Expect = 8e-21
Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++++G GKTT + + G+ T V ++F WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN 131
K L YY Q I + D R + E + I++ NK D+ +
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 132 RQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ +T R +N A S + +L
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 80.5 bits (197), Expect = 2e-20
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 11/163 (6%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+L +VG +GKTTFV +G+F + PT+G + + G + WD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 58
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131
+F + + Y + M D + + +L + IP+++ GNK D+
Sbjct: 59 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118
Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
++ ++ + + + Y IS K N + +L +
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 79.2 bits (194), Expect = 1e-19
Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+++++G GKTT +K+ + + + WD GQ
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPT-----QGFNIKSVQSQGFKLNVWDIGGQ 70
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK 130
K Y+ + I + D R ++ +L +P+++ NK D+
Sbjct: 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130
Query: 131 NRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ + R + Q SA + + ++ + +
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.1 bits (191), Expect = 3e-19
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
KL I G G GK+ V R LT F +Y+PT+ E T ++ +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL--ESTYRHQATIDDEVVSMEILDTAGQ 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV--DV 129
+ R+G+ G+ ++++D+T R +++ V L + + N+ ++L GNK D
Sbjct: 61 EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 171
+ + + +YE SA + N + F L R++
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.1 bits (191), Expect = 3e-19
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 16/169 (9%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
P +L ++GD +GK++ + R LTG ++ + + + A
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKV 127
K + I +F + +++ V H L + + + L G +
Sbjct: 64 DAK-------FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116
Query: 128 DVKNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + K YYE A N ++ F +A+K+
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 77.7 bits (190), Expect = 5e-19
Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++I+G G GKTT + R GE PTIG V L ++ WD GQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLS----YKNLKLNVWDLGGQT 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
YY I + D T + + + ++ +++ NK D
Sbjct: 73 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132
Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K + + ++ SA + +L +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.1 bits (188), Expect = 7e-19
Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 5/162 (3%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
S K+ I+G GK++ + + G+F Y+PTI L N + DTAGQ
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 62
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV- 129
+++ Y I I+++ VT V IPI+L GNK D+
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 130 -KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
+ + N + E SAK N F + +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 75.9 bits (185), Expect = 2e-18
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 12/166 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+L+++G GKTT +K+ + + TI + + WD GQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
Y+ I + D R ++ + L +++ NK D+
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117
Query: 132 R-----QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
+A ++ R + + SA + + +L ++
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (181), Expect = 7e-18
Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 6/164 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR----FYCWDT 69
+++V++G+ G GK+T + + E G+ W+
Sbjct: 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
G+ ++ + A + R E+IPI+L GNK D+
Sbjct: 64 KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123
Query: 130 KNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++ + ++ E SA +N ++ F + R++
Sbjct: 124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.2 bits (178), Expect = 2e-17
Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 2/160 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+K++++G G GK+ + E + E + + Y
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV--KN 131
++ + + R +++PI+L GNK D+
Sbjct: 62 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121
Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + ++ E SA ++N + F + R++
Sbjct: 122 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 72.3 bits (176), Expect = 4e-17
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++IVG GKTT + + F + RF WD GQE
Sbjct: 16 HKVIIVGLDNAGKTTILYQ-----FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN 131
+ YY + + I++ D T R + + +++ NK DVK
Sbjct: 71 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130
Query: 132 RQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++T + A + + ++ +L
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 70.5 bits (171), Expect = 2e-16
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++I+G G GKTT + R GE T + ++F WD G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
YY + I + D R + + +V+ NK D++
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120
Query: 132 RQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ + + Q ++ SA ++ +L L
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.1 bits (170), Expect = 3e-16
Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 19/169 (11%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KL+ +G GKTT + T+ HP G I+F +D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR 132
L Y+ + + D + L + E ++P V+ GNK+D N
Sbjct: 57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116
Query: 133 QVKAKQVT------------FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
+A+ + ++ ++ + S + + F +L++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 67.4 bits (163), Expect = 5e-15
Identities = 27/178 (15%), Positives = 53/178 (29%), Gaps = 24/178 (13%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ KLV +G GKTT + + HP + F +D G
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTL-----HPTSEELTIAGMTFTTFDLGGH 67
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
+ + Y + + D L N+PI++ GNK+D
Sbjct: 68 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127
Query: 131 NRQVKAK-----------------QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + + L+ + S + + F ++A+ +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.1 bits (155), Expect = 8e-14
Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 19/168 (11%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++++G G +GK+TF+K+ +PT G+ + + F D GQ
Sbjct: 3 VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNVP----FKMVDVGGQR 55
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE------------NIPIV 121
+ + + + L N+ I+
Sbjct: 56 SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
L NK D+ +V+ + + + + F R
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRR 163
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.0 bits (155), Expect = 1e-13
Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 20/142 (14%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ +L+++G G +GK+T VK+ T G+ K+ F+ +D GQ
Sbjct: 6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQV----DKVNFHMFDVGGQ 57
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------------RVCENIPI 120
+ I + ++ L R I +
Sbjct: 58 RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 117
Query: 121 VLCGNKVDVKNRQVKAKQVTFH 142
+L NK D+ +V A +
Sbjct: 118 ILFLNKQDLLAEKVLAGKSKIE 139
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.3 bits (150), Expect = 4e-13
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 18/169 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
KL+++G G +GK+TF+K+ PT G+ +P D + F D GQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVI----FRMVDVGGQR 56
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------------RVCENIPIV 121
+ + + + ++ + +N ++
Sbjct: 57 SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
L NK D+ ++ + + + + + K F+ L
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD 165
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.2 bits (147), Expect = 1e-12
Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 16/164 (9%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++ VG +GKT R LTG++ + + +I N G +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARL-----TYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
L D + + + + D A + + D + + +++ NK D+
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120
Query: 130 KN----RQVKAK------QVTFHRKKNLQYYEISAKSNYNFEKP 163
+ ++ + + R + S+ + K
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKK 164
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 56.7 bits (135), Expect = 3e-11
Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 14/166 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K+VI G GK++ + L G G L + + + DTAG
Sbjct: 2 MKVVIAGRPNAGKSSLLNA-LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60
Query: 74 KFGGLRDGYYI--------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
+ + I + M D T W + R+ +PI + N
Sbjct: 61 EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120
Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K D+ + +V H +SA++ + +L + +
Sbjct: 121 KADITGETLGMSEVNGH-----ALIRLSARTGEGVDVLRNHLKQSM 161
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.7 bits (133), Expect = 9e-11
Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 22/169 (13%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
KL+++G G +GK+T VK+ + +E G+ F F +D GQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDLH----FKMFDVGGQR 53
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL------------CRVCENIPIV 121
+ I ++ + + + I+
Sbjct: 54 SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
L NK D+ ++K +T + + Y + F L ++
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY-IQCQFEDLNKR 161
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 46.6 bits (109), Expect = 2e-07
Identities = 23/154 (14%), Positives = 42/154 (27%), Gaps = 10/154 (6%)
Query: 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG------ 71
+VG GK++ + +T K L + RF D G
Sbjct: 6 LVGYPNAGKSSLLAA-MTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 64
Query: 72 -QEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
+ G LR ++ T + + P ++ NKVD
Sbjct: 65 EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124
Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
+ + ++ L +SA +
Sbjct: 125 LLEEEAVKALADALAREGLAVLPVSALTGAGLPA 158
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 46.2 bits (108), Expect = 2e-07
Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 17/166 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K+ IVG GK+T + + P G P+D ++ DTAG
Sbjct: 8 AIKVAIVGRPNVGKSTLFNA-ILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 66
Query: 73 EKFGGLRDGYYIHGQCA----------IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 122
+ + +++ + A L +V+
Sbjct: 67 RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVV 126
Query: 123 CGNKVDVKNRQVKAKQVTFHRKKNLQYYE------ISAKSNYNFEK 162
V +R+ + + T ++ L + + SA +N ++
Sbjct: 127 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.2 bits (108), Expect = 3e-07
Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 26/167 (15%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
++I G +GKT+ + LT + V + D G K
Sbjct: 6 IIIAGPQNSGKTSLLTL-LTTD-----SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKL 59
Query: 76 GGLRDGYYIHGQCAIIMF-----DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGN 125
Y + + D+ + E I I++ N
Sbjct: 60 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119
Query: 126 KVDVKNRQVKAK----------QVTFHRKKNLQYYEISAKSNYNFEK 162
K ++ + +K +V RKK+L E E
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAEN 166
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 45.1 bits (105), Expect = 5e-07
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 7/161 (4%)
Query: 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
+IVG GK+T + L + + E GV P+ F DT G
Sbjct: 4 LIVGRPNVGKSTLFNK-LVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 77 GLRDGYYIHGQC------AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130
+ A ++ V + +L NK +
Sbjct: 63 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122
Query: 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + + +SA+ N N + + +KL
Sbjct: 123 REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 163
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 15/164 (9%)
Query: 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCGKIRF 64
+ +D + + G+ G+GK++F+ E++ GV ++ + +
Sbjct: 50 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNV 109
Query: 65 YCWDTAGQEKFGGLRDGY---YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIP 119
WD G D Y + + R D+ +
Sbjct: 110 VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKK-----NDIDIAKAISMMKKE 164
Query: 120 IVLCGNKVD-VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
KVD + + TF ++K LQ +I F +
Sbjct: 165 FYFVRTKVDSDITNEADGEPQTFDKEKVLQ--DIRLNCVNTFRE 206
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 43.6 bits (101), Expect = 2e-06
Identities = 29/166 (17%), Positives = 46/166 (27%), Gaps = 8/166 (4%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
S + IVG GK+T + L G P L G+ + DT G
Sbjct: 5 SGFVAIVGKPNVGKSTLLNN-LLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVCENIPIVLCGN 125
K + + R L + +PI+L GN
Sbjct: 64 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 123
Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K+D +A + + +SA + L +
Sbjct: 124 KLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 41.5 bits (96), Expect = 1e-05
Identities = 23/167 (13%), Positives = 45/167 (26%), Gaps = 14/167 (8%)
Query: 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77
+VG GK+T + ++ K + V L F D G +
Sbjct: 6 LVGFPSVGKSTLLSV-VSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 64
Query: 78 LRDG-------------YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
G +H + Y + + P ++
Sbjct: 65 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124
Query: 125 NKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
NK+D+ + + + ISA + + +A +L
Sbjct: 125 NKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 171
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 40.7 bits (94), Expect = 2e-05
Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 12/155 (7%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-QE 73
++VIVG GK+T + R L E G + I F DTAG +
Sbjct: 2 RMVIVGKPNVGKSTLLNR-LLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 74 KFGGLRDGYYIH------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127
+ L + I + I++F + A + R + +N ++ NKV
Sbjct: 61 ETNDLVERLGIERTLQEIEKADIVLFVLDA---SSPLDEEDRKILERIKNKRYLVVINKV 117
Query: 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
DV + + +++ + +ISA EK
Sbjct: 118 DVVEKINE-EEIKNKLGTDRHMVKISALKGEGLEK 151
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 39.7 bits (91), Expect = 4e-05
Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
IVG GK+T + + L G+ H + G + DT G
Sbjct: 9 AIVGRPNVGKSTLLNK-LLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 77 GLRDGYYIHGQCAIIMFDV--------TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
++ + + DV R T + ++ I V + V
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127
Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K + Q + L ISA++ N + + + L
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 170
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 37.8 bits (86), Expect = 2e-04
Identities = 17/169 (10%), Positives = 51/169 (30%), Gaps = 12/169 (7%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-------IRFYCW 67
++ + G GK++F+ + + + G + N F
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127
+ +E +G + + Y + + + + IP+++ K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 128 DVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKPFLYLARKL 171
D + K R+ + S+++ ++ + + + +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 35.3 bits (80), Expect = 0.001
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 1/101 (0%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
L GTGKTT + + L + ++ D + Y AG +
Sbjct: 5 LAFAAWSGTGKTTLL-KKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63
Query: 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 116
+ ++ + + T DL V
Sbjct: 64 IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEG 104
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 173 | |||
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.97 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.95 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.95 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.95 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.94 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.94 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.94 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.94 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.93 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.93 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.93 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.9 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.9 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.89 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.89 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.89 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.89 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.89 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.87 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.83 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.82 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.8 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.79 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.78 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.77 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.76 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.75 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.73 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.68 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.67 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.62 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.61 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.51 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.42 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.41 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.2 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.1 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.01 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.91 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.91 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.84 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.74 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.66 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.47 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.41 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.38 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.37 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.34 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.22 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.22 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.19 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.13 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.98 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.97 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.92 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.87 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.87 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.86 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.84 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.78 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.78 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.74 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.72 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.71 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.7 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.68 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.67 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.66 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.66 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.63 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.6 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.58 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.57 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.56 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.53 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.53 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.52 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.5 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.48 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.46 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.45 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.45 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.41 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.39 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.39 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.38 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.37 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.36 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.34 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.31 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.31 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.3 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.29 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.29 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.28 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.27 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.26 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.24 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.19 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.18 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.17 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.17 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.16 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.13 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.12 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.11 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.1 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.07 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.07 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.07 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.02 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.02 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.01 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.01 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.98 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.96 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.96 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.95 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.94 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.93 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.91 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.89 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.88 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.83 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.82 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.77 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.77 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.74 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.74 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.74 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.71 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.69 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.6 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.58 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.52 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.51 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.43 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.43 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.43 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.43 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.4 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.39 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.39 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.37 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.37 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.33 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.28 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.2 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.18 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.17 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.11 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.11 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.05 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.03 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.01 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.96 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.93 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.87 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.84 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.8 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.8 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.78 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.77 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.73 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.7 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.64 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.6 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.53 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.52 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.45 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.39 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.38 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.31 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.3 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.24 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.23 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.21 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.19 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.94 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.89 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.85 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.84 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.83 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 94.79 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.64 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.58 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.48 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.45 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.43 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 94.33 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 94.31 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.3 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.12 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 94.07 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.02 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.34 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.3 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 92.41 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 91.99 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.5 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.35 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 90.81 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 90.73 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 90.49 | |
| d1eg7a_ | 549 | Formyltetrahydrofolate synthetase {Moorella thermo | 90.1 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.94 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.61 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 89.32 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 88.85 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 88.0 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.63 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 87.59 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 87.54 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.17 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.96 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 86.82 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.76 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.36 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.12 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.83 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 85.32 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 85.32 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 84.71 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 84.3 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 83.14 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 82.99 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 82.86 | |
| d1kjwa2 | 199 | Guanylate kinase-like domain of Psd-95 {Rat (Rattu | 82.39 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 82.04 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 81.93 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 81.46 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 80.66 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 80.47 |
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-40 Score=222.12 Aligned_cols=161 Identities=83% Similarity=1.386 Sum_probs=146.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||+++|+.+.+...+.+|.+.+........++..+.+.+||++|++.+..++..++++++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 58999999999999999999999999988999999998888888888899999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
||+++++|++.+..|+..+.+..++.|+++|+||+|+..+....+...++...+++|+++||++|.|++++|++|++.++
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~ 162 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence 99999999999999999998888899999999999998877777777889999999999999999999999999999876
Q ss_pred C
Q 030693 173 G 173 (173)
Q Consensus 173 ~ 173 (173)
+
T Consensus 163 ~ 163 (170)
T d1i2ma_ 163 G 163 (170)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-39 Score=214.84 Aligned_cols=161 Identities=31% Similarity=0.618 Sum_probs=148.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|++|+|||||+++|..+.+...+.+|.+.+........++..+.+.+||++|++++..++..+++.++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 48999999999999999999999999888899999888888888888999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
||++++++++.+..|++.+.+..++.|+++|+||+|+.+. ... ++..+++.+++++++++||++|.|++++|++|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~ 161 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 161 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred EeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence 9999999999999999999988889999999999999763 333 34567899999999999999999999999999998
Q ss_pred hhC
Q 030693 171 LAG 173 (173)
Q Consensus 171 i~~ 173 (173)
+++
T Consensus 162 ~lq 164 (164)
T d1z2aa1 162 HLQ 164 (164)
T ss_dssp HHC
T ss_pred HhC
Confidence 864
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-38 Score=208.71 Aligned_cols=161 Identities=30% Similarity=0.546 Sum_probs=139.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|+|||||+++|+.+.+.+.+.++.+.+........++..+.+.+||++|++++..++..+++++|++++|
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 82 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV 82 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence 48999999999999999999999999999999999888888888888899999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||+++++|++.+..|+..+.... .+.|+++++||+|+.+. .+ .++..+++.+++++|+++||++|.|++++|++|++
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~ 162 (167)
T d1z08a1 83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 162 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred EeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence 99999999999999988776553 57889999999999763 33 34566899999999999999999999999999999
Q ss_pred HhhC
Q 030693 170 KLAG 173 (173)
Q Consensus 170 ~i~~ 173 (173)
.+++
T Consensus 163 ~i~~ 166 (167)
T d1z08a1 163 RMIE 166 (167)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 9874
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1e-37 Score=207.75 Aligned_cols=161 Identities=27% Similarity=0.567 Sum_probs=144.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|+|||||+++|..+.+.+.+.++.+.+.....+......+.+.+|||||++++..++..+++++|++|+|
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv 84 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 84 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 58999999999999999999999999888899999888888888888889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||+++++++..+..|+..+.... ++.|+++++||+|+.+... .++...++...+++++++||++|.|++++|++|++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~ 164 (169)
T d3raba_ 85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 164 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred EECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence 99999999999998887776653 6789999999999987432 34456788899999999999999999999999999
Q ss_pred HhhC
Q 030693 170 KLAG 173 (173)
Q Consensus 170 ~i~~ 173 (173)
.+++
T Consensus 165 ~i~e 168 (169)
T d3raba_ 165 VICE 168 (169)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-37 Score=208.46 Aligned_cols=163 Identities=31% Similarity=0.541 Sum_probs=144.0
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
++.+.+||+++|.+|+|||||+++|..+.+...+.++.. +.....+..++..+.+.+||++|++++...+..+++++|+
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 80 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 80 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence 345679999999999999999999999999888888764 5555677788889999999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
+++|||++++++++.+..|+..+.+. ..+.|+++|+||+|+.+. .. ..+...++...+++|+++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f 160 (173)
T d2fn4a1 81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 160 (173)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence 99999999999999999999988765 368899999999998763 33 345678999999999999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
+.+++.+.
T Consensus 161 ~~l~~~i~ 168 (173)
T d2fn4a1 161 EQLVRAVR 168 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.6e-37 Score=205.70 Aligned_cols=161 Identities=33% Similarity=0.530 Sum_probs=143.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|.+++|||||++++..+.+.+.+.++.+... ......++..+.+.+||++|++.+...+..+++++|+++
T Consensus 2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l 80 (169)
T d1x1ra1 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 80 (169)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEE
Confidence 5689999999999999999999999998888888887544 455677888999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCC-ChHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNY-NFEKPFL 165 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~ 165 (173)
+|||+++++|+..+..|+..+.+.. .+.|+++++||+|+... .+ .++..+++.+++++|+++||+++. ||+++|+
T Consensus 81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~ 160 (169)
T d1x1ra1 81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 160 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence 9999999999999999999987663 47899999999999774 33 345678999999999999999886 9999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
.|++.+.
T Consensus 161 ~l~~~i~ 167 (169)
T d1x1ra1 161 DLVRVIR 167 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-37 Score=209.25 Aligned_cols=163 Identities=24% Similarity=0.368 Sum_probs=139.7
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
+...+||+++|.+|+|||||+++|+.+.+...+.+|.+. .........+..+.+.+||++|++.+...+..+++++|++
T Consensus 6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ 84 (185)
T d2atxa1 6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 84 (185)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence 455799999999999999999999999998888888864 4455666777889999999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCcc-------------ccc-cHHHHHHHHHcC-CcEEEEc
Q 030693 90 IIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-------------RQV-KAKQVTFHRKKN-LQYYEIS 153 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~-------------~~~-~~~~~~~~~~~~-~~~~~~S 153 (173)
++|||+++++||+.+.. |...++...++.|+++|+||+|+.+ +.+ .++..+++++++ +.|++||
T Consensus 85 ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~S 164 (185)
T d2atxa1 85 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 164 (185)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred eeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEec
Confidence 99999999999988764 6666666678999999999999864 122 234457777776 7999999
Q ss_pred cCCCCChHHHHHHHHHHhhC
Q 030693 154 AKSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 154 ~~~~~~i~~~~~~i~~~i~~ 173 (173)
|++|.|++++|+.++++++.
T Consensus 165 Ak~~~gv~e~F~~li~~il~ 184 (185)
T d2atxa1 165 ALTQKGLKTVFDEAIIAILT 184 (185)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHcC
Confidence 99999999999999998763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-37 Score=205.40 Aligned_cols=159 Identities=31% Similarity=0.584 Sum_probs=144.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+++|..+.+...+.++.+.+........++..+.+.+||++|++.+...+..++..++++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 69999999999999999999999999999999988888888888888999999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
|++++.+++.+..|+..+.... ++.|+++|+||+|+.+ +... ++..++++.+++.|++|||++|.|++++|++|+++
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~ 160 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 160 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence 9999999999999988887654 6899999999999975 3333 35668999999999999999999999999999998
Q ss_pred hh
Q 030693 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
+.
T Consensus 161 l~ 162 (164)
T d1yzqa1 161 LP 162 (164)
T ss_dssp SC
T ss_pred hC
Confidence 74
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-37 Score=205.87 Aligned_cols=162 Identities=28% Similarity=0.522 Sum_probs=146.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++++||+++|.+|+|||||+++|..+.+.+.+.++.+.+........+.....+.+||++|++++..++..+++.+++++
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 46899999999999999999999999999999999998888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||+++++++..+..|+..+.... ++.|+++|+||+|+.+. .. ..+..+++...+++|+++||++|.|++++|.+|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l 161 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 161 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999888776654 68899999999999763 33 335668999999999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
++++.
T Consensus 162 ~~~i~ 166 (167)
T d1z0ja1 162 SRRIP 166 (167)
T ss_dssp HHHCC
T ss_pred HHhCC
Confidence 99863
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-37 Score=206.96 Aligned_cols=160 Identities=35% Similarity=0.630 Sum_probs=144.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+|||||++++..++..++++++++++|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v 84 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 84 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence 48999999999999999999999999888888888888888888888999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|++++.++..+..|+..+.+.. .+.|+++|+||+|+.+. ... ++..+++...++++++|||++|.|++++|++|++
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~ 164 (171)
T d2ew1a1 85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred eecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence 99999999999999888886654 57899999999998764 333 3456789999999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
+++
T Consensus 165 ~l~ 167 (171)
T d2ew1a1 165 RLI 167 (171)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-37 Score=205.78 Aligned_cols=161 Identities=25% Similarity=0.341 Sum_probs=143.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+.+||+++|.+|+|||||+++|..+.+...+.+|.+.+. ...+..++..+.+.+||++|.+.+..++..+++.+|+++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i 80 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 80 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence 3568999999999999999999999999888889988765 356677888999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||++++++++.+..|+..+.+.. ++.|+++|+||+|+... .+ .++..+++.+++++|+++||++|.|++++|+.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 160 (167)
T d1xtqa1 81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 160 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence 9999999999999999999887653 57899999999998763 33 33456899999999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+++.+.
T Consensus 161 li~~~~ 166 (167)
T d1xtqa1 161 IILEAE 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998874
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.2e-37 Score=205.32 Aligned_cols=160 Identities=30% Similarity=0.504 Sum_probs=138.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
+.||+++|.+|+|||||++++..+.+.+.+.+|.+ +........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 80 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 80 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence 57999999999999999999999999988888887 44445667778889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHcC-CcEEEEccCC
Q 030693 93 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISAKS 156 (173)
Q Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~~-~~~~~~S~~~ 156 (173)
||+++++||+.+.. |...+....++.|+++|+||+|+.+.. . ..+..+++.+.+ .+|++|||++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999998876 566666667899999999999986421 1 234457777777 5899999999
Q ss_pred CCChHHHHHHHHHHhhC
Q 030693 157 NYNFEKPFLYLARKLAG 173 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i~~ 173 (173)
|.|++++|+.+++.+++
T Consensus 161 ~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 161 KDGVREVFEMATRAALQ 177 (177)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 99999999999998874
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-37 Score=204.84 Aligned_cols=160 Identities=33% Similarity=0.554 Sum_probs=144.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
-+||+++|.+|+|||||+++++.+.+...+.++.+.+........++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence 48999999999999999999999999888888888888888888888999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccc-c-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|++++++++.+..|+..+.+.. ++.|+++++||+|+..... . ++...++...+++++++||++|.|++++|++|++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~ 163 (166)
T d1z0fa1 84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 163 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999988887654 5889999999999866433 2 3566889999999999999999999999999999
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
++.
T Consensus 164 ~i~ 166 (166)
T d1z0fa1 164 KIY 166 (166)
T ss_dssp HHC
T ss_pred HhC
Confidence 863
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-37 Score=205.71 Aligned_cols=161 Identities=28% Similarity=0.533 Sum_probs=142.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++++||+++|.+|+|||||+++++.+.+...+.++.+ +........++..+.+.+||++|++.+...+..+++++++++
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i 79 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence 4689999999999999999999999999888888887 445566777888999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||+++++++..+..|+..+.... ++.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|++
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~ 159 (167)
T d1kaoa_ 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence 9999999999999999988886643 68999999999998763 33 33455788899999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+++++-
T Consensus 160 i~~~i~ 165 (167)
T d1kaoa_ 160 IVRQMN 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999874
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=4e-37 Score=204.60 Aligned_cols=161 Identities=30% Similarity=0.530 Sum_probs=140.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+-+||+++|.+|+|||||++++..+.+...+.+|.+.+.. ..+..++..+.+.+||++|++++..++..+++++|+++
T Consensus 2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i 80 (168)
T d1u8za_ 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeE
Confidence 35689999999999999999999999998888999886653 56677888999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
+|||++++++++.+..|+..+.+.. ++.|+++|+||+|+.+. .. .++..+++...+++++++||++|.|++++|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~ 160 (168)
T d1u8za_ 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence 9999999999999999999987763 68899999999999763 33 34556899999999999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
|++++.
T Consensus 161 l~~~i~ 166 (168)
T d1u8za_ 161 LMREIR 166 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-37 Score=202.97 Aligned_cols=162 Identities=31% Similarity=0.564 Sum_probs=141.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++++||+++|.+|+|||||++++..+.+...+.++.+... ...+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 79 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence 4689999999999999999999999999988888887555 455667788899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCcccccc--HHHHHHHHH-cCCcEEEEccCCCCChHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVK--AKQVTFHRK-KNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+|||++++++++.+..|+..+.+. .++.|+++|+||+|+...... ++...++.+ .+++|+++||++|.|+.++|+
T Consensus 80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~ 159 (167)
T d1c1ya_ 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence 999999999999999999888765 368999999999999874332 234566666 578999999999999999999
Q ss_pred HHHHHhhC
Q 030693 166 YLARKLAG 173 (173)
Q Consensus 166 ~i~~~i~~ 173 (173)
+|++++.+
T Consensus 160 ~l~~~i~k 167 (167)
T d1c1ya_ 160 DLVRQINR 167 (167)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99998864
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-37 Score=202.93 Aligned_cols=157 Identities=19% Similarity=0.266 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||++++....+.. ..++.+.+ ....+..++..+.+.+||++|++.++.++..+++++|++++||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~ 79 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 79 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEE-EEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeee-ecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence 799999999999999999987766543 34444433 3456677888999999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
|++++++++.+..|+..+.... .++|+++|+||+|+.+. .+ ..+..+++..++++|+++||++|.|+.++|++|++
T Consensus 80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~ 159 (168)
T d2gjsa1 80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 159 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence 9999999999999999987764 57899999999999774 33 34556889999999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 160 ~i~ 162 (168)
T d2gjsa1 160 QIR 162 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.9e-37 Score=202.34 Aligned_cols=162 Identities=28% Similarity=0.542 Sum_probs=144.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++++||+++|++|||||||+++|+.+.+...+.++.+.+... .....+..+.+.+||++|++.+...+..+++.+++++
T Consensus 1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i 79 (166)
T d1ctqa_ 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence 457999999999999999999999999988888888866553 4566778899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|+|++++.+++.+..|+..+.+.. +++|+++|+||+|+..+.... +..+++..++++|+++||++|.|++++|++|
T Consensus 80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i 159 (166)
T d1ctqa_ 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence 9999999999999999999988754 579999999999998766544 4567999999999999999999999999999
Q ss_pred HHHhhC
Q 030693 168 ARKLAG 173 (173)
Q Consensus 168 ~~~i~~ 173 (173)
++.+.+
T Consensus 160 ~~~i~~ 165 (166)
T d1ctqa_ 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-37 Score=204.51 Aligned_cols=159 Identities=26% Similarity=0.446 Sum_probs=138.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|.+|+|||||+++|+.+.+.+.+.+|.+.... .....++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 79 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 79 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccc-cceeeccccceeccccccccccccccccccccceeEEEE
Confidence 3689999999999999999999999998888899885543 455677888999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhh---cCCCCEEEEEeCCCCcc-cccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|||+++++++..+..|+..+.+. .++.|+++|+||+|+.. +.+. ++..++++.++++|+++||++|.|++++|+.
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~ 159 (171)
T d2erxa1 80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 159 (171)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence 99999999999999998877654 35889999999999965 3343 3566899999999999999999999999999
Q ss_pred HHHHh
Q 030693 167 LARKL 171 (173)
Q Consensus 167 i~~~i 171 (173)
|++.+
T Consensus 160 l~~~~ 164 (171)
T d2erxa1 160 LLNLE 164 (171)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-36 Score=202.50 Aligned_cols=162 Identities=33% Similarity=0.593 Sum_probs=146.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.++||+++|.+|+|||||+++|+.+.+...+.++.+.+............+.+.+||++|++.+...+..++++++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 46899999999999999999999999999999999999888888888889999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccc-cccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|+|.++++++..+..|...+.+. .++.|+++|+||+|+.+. .+.. +..+++...+++|+++||++|.|++++|++|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~ 164 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988887665 468999999999998764 3333 45678889999999999999999999999999
Q ss_pred HHhhC
Q 030693 169 RKLAG 173 (173)
Q Consensus 169 ~~i~~ 173 (173)
+.+.+
T Consensus 165 ~~i~~ 169 (170)
T d1r2qa_ 165 KKLPK 169 (170)
T ss_dssp HTSCC
T ss_pred HHHhh
Confidence 88753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-36 Score=202.36 Aligned_cols=160 Identities=34% Similarity=0.596 Sum_probs=141.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.++++++|
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v 83 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 83 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence 48999999999999999999999999888888888888888888888899999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||.++++|+..+..|+..+.+.. ++.|+++|+||+|+.+.. .. .....+....+.+++++||++|.|++++|+++++
T Consensus 84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~ 163 (175)
T d2f9la1 84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 163 (175)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHH
Confidence 99999999999999999887765 578999999999998643 22 3345777888999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 164 ~i~ 166 (175)
T d2f9la1 164 EIY 166 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-36 Score=202.93 Aligned_cols=160 Identities=32% Similarity=0.588 Sum_probs=143.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|||||||++++..+.+.+.+.++.+.+.....+..++....+.+||+||++++..++..+++.++++++|
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 84 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence 38999999999999999999999999888899988888888888888889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccccc--HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
+|.++++++..+..|+..+.... ++.|+++|+||+|+...... .....++...+++++++||++|.|++++|+++++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~ 164 (174)
T d2bmea1 85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR 164 (174)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred EecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence 99999999999999888887654 68999999999998663332 3345788899999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.++
T Consensus 165 ~i~ 167 (174)
T d2bmea1 165 KIL 167 (174)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-36 Score=203.28 Aligned_cols=162 Identities=24% Similarity=0.417 Sum_probs=139.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++.+||+++|.+|+|||||+++|..+.+...+.+|.+.. .......++..+.+.+||++|++++...+..+++.+|+++
T Consensus 1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
T d2ngra_ 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 79 (191)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence 357999999999999999999999999998888998744 4455667778899999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCcccc-------------c-cHHHHHHHHHc-CCcEEEEcc
Q 030693 91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKK-NLQYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~-~~~~~~~~~~~-~~~~~~~S~ 154 (173)
+|||+++++||+.+.. |...+....++.|+++|+||+|+.+.. + .++..+++.+. ++.|+++||
T Consensus 80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 159 (191)
T d2ngra_ 80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159 (191)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence 9999999999999976 666666667899999999999986421 2 23445677775 579999999
Q ss_pred CCCCChHHHHHHHHHHhhC
Q 030693 155 KSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~~ 173 (173)
++|.|++++|+.+++.+++
T Consensus 160 k~~~~V~e~f~~l~~~~~~ 178 (191)
T d2ngra_ 160 LTQKGLKNVFDEAILAALE 178 (191)
T ss_dssp TTCTTHHHHHHHHHHHHTS
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999987763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-36 Score=202.01 Aligned_cols=160 Identities=33% Similarity=0.579 Sum_probs=139.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
-+||+++|++|+|||||+++++.+.+...+.++.+.+............+.+.+||++|++.+..++..+++.+|++++|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence 37999999999999999999999998888888887777777777788889999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCcccc-c-cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++++++.+..|+..+.+.. ++.|+++|+||+|+.... . .++...++...+++|+++||++|.|++++|.++++
T Consensus 83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~ 162 (173)
T d2a5ja1 83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 162 (173)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988887653 689999999999987632 3 33466888999999999999999999999999999
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.++
T Consensus 163 ~i~ 165 (173)
T d2a5ja1 163 EIY 165 (173)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-36 Score=204.78 Aligned_cols=160 Identities=30% Similarity=0.572 Sum_probs=143.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+|+|.+|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+|||||++++..++..+++.++++++|
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v 85 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 85 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999999998899999888888888888999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCcccc-cc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||+++++++..+..|...+.+. ..+.|+++|+||+|+.+.. .. ++...++...++.++++||++|.|+.++|+++++
T Consensus 86 ~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~ 165 (194)
T d2bcgy1 86 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 165 (194)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred EeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHH
Confidence 9999999999999888877664 4688999999999998733 23 3345788889999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 166 ~i~ 168 (194)
T d2bcgy1 166 QIK 168 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-36 Score=201.50 Aligned_cols=160 Identities=31% Similarity=0.572 Sum_probs=137.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 459999999999999999999999998888888877 4455677788889999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-c-ccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
|||.++++|++.+..|+..+.+.. .+.|+++|+||+|+.+. . ..++..++++..+++|++|||++|.|++++|+.|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l 162 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence 999999999999999998876653 57899999999999764 2 3345668999999999999999999999999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
++.+.
T Consensus 163 ~~~i~ 167 (171)
T d2erya1 163 VRVIR 167 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-36 Score=200.29 Aligned_cols=163 Identities=33% Similarity=0.583 Sum_probs=147.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|.+|+|||||+++|..+.+...+.++.+.......+..++..+.+.+||+||++++..++..+++++|+++
T Consensus 5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii 84 (177)
T d1x3sa1 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 84 (177)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45799999999999999999999999998888888888887778888889999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccH-HHHHHHHHcCCcEEEEccCCCCChHHHHHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 167 (173)
+|||++++++++.+..|+..+.+.. ...|+++++||.|...+.... +..++++.++++++++||++|.|++++|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l 164 (177)
T d1x3sa1 85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 164 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999987754 468899999999988766554 4568899999999999999999999999999
Q ss_pred HHHhhC
Q 030693 168 ARKLAG 173 (173)
Q Consensus 168 ~~~i~~ 173 (173)
++++++
T Consensus 165 ~~~l~~ 170 (177)
T d1x3sa1 165 VEKIIQ 170 (177)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 998864
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-36 Score=202.42 Aligned_cols=162 Identities=27% Similarity=0.470 Sum_probs=139.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
++++||+++|.+|+|||||+++|+.+.+...+.+|.+. .....+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 81 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence 56799999999999999999999999998888898874 44456677888999999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCcccc--------------ccHHHHHHHHHcC-CcEEEEcc
Q 030693 91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISA 154 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S~ 154 (173)
+|||++++++++.+.. |...+....++.|+++|+||+|+.+.. ...+...+++..+ +.|++|||
T Consensus 82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA 161 (183)
T d1mh1a_ 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (183)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence 9999999999999875 677777777899999999999985421 1223446666666 89999999
Q ss_pred CCCCChHHHHHHHHHHhhC
Q 030693 155 KSNYNFEKPFLYLARKLAG 173 (173)
Q Consensus 155 ~~~~~i~~~~~~i~~~i~~ 173 (173)
++|.|++++|+.+++.++.
T Consensus 162 k~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 162 LTQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCcCHHHHHHHHHHHHcC
Confidence 9999999999999998763
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-36 Score=199.23 Aligned_cols=160 Identities=28% Similarity=0.559 Sum_probs=138.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
-+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 48999999999999999999999999988899999899888898899999999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccccccHH-HHHHHHHcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
||.+++++++.+..|+..+.... ...|++++++|.|+..+....+ ..+++..++++++++||++|+|++++|++|++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~ 161 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 161 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999998877776664 5778899999999987655544 457888999999999999999999999999988
Q ss_pred hh
Q 030693 171 LA 172 (173)
Q Consensus 171 i~ 172 (173)
+.
T Consensus 162 i~ 163 (166)
T d1g16a_ 162 IQ 163 (166)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-36 Score=202.55 Aligned_cols=160 Identities=29% Similarity=0.573 Sum_probs=115.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
-+||+++|.+++|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|++++|
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v 85 (173)
T d2fu5c1 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV 85 (173)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence 48999999999999999999999998888889999888888888888899999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccccc--cHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 169 (173)
||++++.++..+..|...+... .++.|+++|+||.|+..... .++...++...++++++|||++|+|++++|++|++
T Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~ 165 (173)
T d2fu5c1 86 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 165 (173)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred EECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999988888654 46899999999999876432 33456788889999999999999999999999998
Q ss_pred Hhh
Q 030693 170 KLA 172 (173)
Q Consensus 170 ~i~ 172 (173)
.+.
T Consensus 166 ~i~ 168 (173)
T d2fu5c1 166 DIK 168 (173)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.7e-36 Score=199.01 Aligned_cols=160 Identities=33% Similarity=0.603 Sum_probs=143.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
..+||+++|.+|+|||||+++|..+.+.+.+.++.+.+.....+..++..+.+.+||++|++.+..++..++..+|++++
T Consensus 2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il 81 (170)
T d1ek0a_ 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence 36899999999999999999999999999999999988888888888899999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccc----cc-cHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR----QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~----~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
|||++++++++.+..|+..+... ....|+++++||+|+.+. .. ..+..++++..+++|+++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~ 161 (170)
T d1ek0a_ 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence 99999999999999988776665 357899999999998652 22 3455688999999999999999999999999
Q ss_pred HHHHHh
Q 030693 166 YLARKL 171 (173)
Q Consensus 166 ~i~~~i 171 (173)
.|++++
T Consensus 162 ~i~~~i 167 (170)
T d1ek0a_ 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHh
Confidence 998875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.4e-35 Score=198.63 Aligned_cols=159 Identities=36% Similarity=0.688 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|.+|+|||||+++++.+.+...+.+|.+.+.........+..+.+.+||++|+..+...+..++..++++++++
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 79999999999999999999999999999999999998888888889999999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccccccHHH-HHHH-HHcCCcEEEEccCCCCChHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQ-VTFH-RKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~-~~~~-~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|.+++.++..+..|++.+.... .++|+++|+||+|+.++....+. .+++ ...+++++++||++|.|++++|++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~ 162 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 162 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHH
Confidence 9999999999999998886652 46899999999999886665544 3454 446899999999999999999999
Q ss_pred HHHHhh
Q 030693 167 LARKLA 172 (173)
Q Consensus 167 i~~~i~ 172 (173)
+++.++
T Consensus 163 l~~~i~ 168 (184)
T d1vg8a_ 163 IARNAL 168 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-35 Score=197.36 Aligned_cols=158 Identities=28% Similarity=0.425 Sum_probs=135.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|++|+|||||+++++.+.+.+.+.||.+.++.. ....++..+.+.+||++|++.+. ....+++.++++++|
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv 79 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV 79 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence 6899999999999999999999999999999999877654 44567788999999999998764 456688999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCC-ChHHHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNY-NFEKPFLYL 167 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~~i 167 (173)
||+++++++..+..|...+... .++.|+++|+||+|+... .+. ++..+++.+++++|+++||++|. ||+++|..|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l 159 (168)
T d2atva1 80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 159 (168)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence 9999999999998876655443 368999999999999763 343 45568999999999999999998 599999999
Q ss_pred HHHhh
Q 030693 168 ARKLA 172 (173)
Q Consensus 168 ~~~i~ 172 (173)
++.+.
T Consensus 160 ~~~i~ 164 (168)
T d2atva1 160 CREVR 164 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-35 Score=195.80 Aligned_cols=161 Identities=29% Similarity=0.592 Sum_probs=133.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCccc-ccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
.+||+++|++++|||||+++++.+.+.. ...++.+.+.....+..++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~ 85 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL 85 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence 4899999999999999999999988754 345566788888888888889999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-CCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCCChHHHHHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 168 (173)
|||+++++++..+..|+..+.... +..|+++++||+|+.++ ... ++..+++...+++++++||++|.|++++|++|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~ 165 (170)
T d2g6ba1 86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 165 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 999999999999998887776654 57899999999998874 333 345688889999999999999999999999999
Q ss_pred HHhhC
Q 030693 169 RKLAG 173 (173)
Q Consensus 169 ~~i~~ 173 (173)
+.+.+
T Consensus 166 ~~i~k 170 (170)
T d2g6ba1 166 KELKR 170 (170)
T ss_dssp HHHHC
T ss_pred HHcCC
Confidence 98754
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-35 Score=195.76 Aligned_cols=161 Identities=32% Similarity=0.647 Sum_probs=140.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+-+||+++|.+|+|||||++++..+.+.+.+.++.+..........++..+.+.+||++|.......+..++..++++++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence 45899999999999999999999999999899999888888888888889999999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCccccccH-HHHHHHHHc-CCcEEEEccCCCCChHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~-~~~~~~~S~~~~~~i~~~~ 164 (173)
++|.+++.+++.+..|++.+.... ++.|+++|+||+|+.++.... +..+++++. .++|+++||++|.|++++|
T Consensus 85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f 164 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 164 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHH
Confidence 999999999999999998886642 478999999999998765544 456788776 5899999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
+++++.++
T Consensus 165 ~~l~~~il 172 (174)
T d1wmsa_ 165 EEAVRRVL 172 (174)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999886
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-36 Score=202.42 Aligned_cols=160 Identities=34% Similarity=0.574 Sum_probs=138.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecC----------cEEEEEEEeCCCcccccCcchhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC----------GKIRFYCWDTAGQEKFGGLRDGY 82 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~D~~G~~~~~~~~~~~ 82 (173)
.+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+..+. ..+.+.+||++|++++..++..+
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~ 84 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 84 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence 48999999999999999999999998888888887776665554432 34789999999999999999999
Q ss_pred ccCCCEEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccc-ccc-HHHHHHHHHcCCcEEEEccCCCC
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNY 158 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~ 158 (173)
++++|++++|||++++++++.+..|+..+... .+..|+++|+||+|+.+. ... ++..+++.+++++++++||++|.
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~ 164 (186)
T d2f7sa1 85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ 164 (186)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999998877654 357889999999999763 333 34568999999999999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030693 159 NFEKPFLYLARKLA 172 (173)
Q Consensus 159 ~i~~~~~~i~~~i~ 172 (173)
|++++|+++++.++
T Consensus 165 ~i~e~f~~l~~~i~ 178 (186)
T d2f7sa1 165 NVEKAVETLLDLIM 178 (186)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999875
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.9e-35 Score=195.88 Aligned_cols=160 Identities=24% Similarity=0.402 Sum_probs=136.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|.+|+|||||+++++.+.++..+.++.+. ........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv 80 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 80 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence 579999999999999999999999999888888864 4445566788899999999999999999999999999999999
Q ss_pred EECCChhhhhcHHH-HHHHHhhhcCCCCEEEEEeCCCCccc-------------cc-cHHHHHHHHHcC-CcEEEEccCC
Q 030693 93 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKN-LQYYEISAKS 156 (173)
Q Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------~~-~~~~~~~~~~~~-~~~~~~S~~~ 156 (173)
||+++++||+.+.. |...+....++.|+++|+||+|+... .+ .++...++++.+ +.|++|||++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~ 160 (179)
T d1m7ba_ 81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 160 (179)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999999886 55556666789999999999998641 12 234457777766 6899999999
Q ss_pred CC-ChHHHHHHHHHHhhC
Q 030693 157 NY-NFEKPFLYLARKLAG 173 (173)
Q Consensus 157 ~~-~i~~~~~~i~~~i~~ 173 (173)
|. +++++|+.+++.+++
T Consensus 161 ~~n~i~~~F~~~~~~~l~ 178 (179)
T d1m7ba_ 161 SENSVRDIFHVATLACVN 178 (179)
T ss_dssp BHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 98 599999999998864
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-35 Score=196.38 Aligned_cols=160 Identities=28% Similarity=0.575 Sum_probs=125.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEec-CcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
-+||+++|++|+|||||+++|..+.+.+.+.++.+.+......... .....+.+||++|++.+...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 4899999999999999999999999888888887766665555433 455789999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc-----CCCCEEEEEeCCCCcccc--cc-HHHHHHHHHcC-CcEEEEccCCCCChHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQ--VK-AKQVTFHRKKN-LQYYEISAKSNYNFEK 162 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~--~~-~~~~~~~~~~~-~~~~~~S~~~~~~i~~ 162 (173)
|||++++.+++.+..|+..+.... .++|+++++||+|+.+.. .. .+..+++..++ ++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e 161 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT 161 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence 999999999999999999887642 478999999999997632 33 34457787875 8899999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|++|++.++
T Consensus 162 ~f~~l~~~~l 171 (175)
T d1ky3a_ 162 AFEEIARSAL 171 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.9e-34 Score=190.12 Aligned_cols=156 Identities=31% Similarity=0.591 Sum_probs=136.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-CcchhhccCCCEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII 91 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~i~ 91 (173)
.+||+++|.+|+|||||++++..+.+...+.++.+................+.+||++|...+. ..+..+++++|++++
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il 81 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence 5899999999999999999999999998889998888888888888889999999999987665 457788999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccc-cccH-HHHHHHHHcCCcEEEEccCC---CCChHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKS---NYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~S~~~---~~~i~~~~ 164 (173)
|||++++++++.+..|+..+.+.. ++.|+++|+||+|+.+. .+.. +..+++.+++++++++||++ ++||+++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F 161 (165)
T d1z06a1 82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF 161 (165)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence 999999999999999999987763 58999999999999764 3343 45689999999999999987 55999999
Q ss_pred HHHH
Q 030693 165 LYLA 168 (173)
Q Consensus 165 ~~i~ 168 (173)
++|+
T Consensus 162 ~~lA 165 (165)
T d1z06a1 162 MTLA 165 (165)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8874
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=1.5e-34 Score=191.35 Aligned_cols=155 Identities=23% Similarity=0.409 Sum_probs=130.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
++||+++|++|+|||||+++|..+.+.+.+.+|.+.+...... ..+.+.+||+||++.+...+..++..++++++|
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 77 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 77 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE----TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeee----eeEEEEEeeccccccccccccccccccchhhcc
Confidence 6899999999999999999999999988888998877665443 568999999999999999999999999999999
Q ss_pred EECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHH-----HHHHcCCcEEEEccCCCCChHHHHH
Q 030693 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
||+++++++.....|+..+.+. .++.|+++|+||.|+.+.....+..+ .+...+..++++||++|+|++++|+
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~ 157 (164)
T d1zd9a1 78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 157 (164)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHH
Confidence 9999999999998887777543 36899999999999976443333222 2234466889999999999999999
Q ss_pred HHHHHh
Q 030693 166 YLARKL 171 (173)
Q Consensus 166 ~i~~~i 171 (173)
+|++.+
T Consensus 158 ~l~~~~ 163 (164)
T d1zd9a1 158 WLIQHS 163 (164)
T ss_dssp HHHHTC
T ss_pred HHHHcc
Confidence 998864
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-34 Score=191.35 Aligned_cols=159 Identities=20% Similarity=0.323 Sum_probs=130.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcc-cccccceeEEEEEEEEEecCcEEEEEEEeCCC---cccccCcchhhccCCC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG---QEKFGGLRDGYYIHGQ 87 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G---~~~~~~~~~~~~~~~~ 87 (173)
..+||+++|.+|+|||||+++|..+.+. ....++.+.+.....+..++..+.+.+||+++ ++++ ++..+++.+|
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~ 79 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence 4689999999999999999998876654 23345566667777788888899999999765 4544 5677899999
Q ss_pred EEEEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccc-cc-cHHHHHHHHHcCCcEEEEccCCCCChHHH
Q 030693 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
++++|||++++++++.+..|...+... .++.|+++|+||+|+.+. .. .++..+++..++++|+++||++|.|++++
T Consensus 80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~ 159 (172)
T d2g3ya1 80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 159 (172)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence 999999999999999999998888654 368999999999998763 33 33456788999999999999999999999
Q ss_pred HHHHHHHhh
Q 030693 164 FLYLARKLA 172 (173)
Q Consensus 164 ~~~i~~~i~ 172 (173)
|++|++++.
T Consensus 160 f~~l~~~i~ 168 (172)
T d2g3ya1 160 FEGIVRQVR 168 (172)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=6.8e-34 Score=190.12 Aligned_cols=158 Identities=17% Similarity=0.310 Sum_probs=127.0
Q ss_pred CCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCE
Q 030693 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (173)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 88 (173)
.+.+++||+++|++|+|||||++++..+.+.. ..++.+.+...... ..+.+.+||++|++.++..+..+++.+|+
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~i~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 86 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQS----QGFKLNVWDIGGQRKIRPYWRSYFENTDI 86 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEEEEEEE----TTEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeeeEEEecc----CCeeEeEeeccccccchhHHHHHhhccce
Confidence 44567999999999999999999988877653 34555655544333 56889999999999999999999999999
Q ss_pred EEEEEECCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHHH-----HHHHcCCcEEEEccCCCCChH
Q 030693 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~i~ 161 (173)
+++|||++++.++..+..|+..+.... .+.|+++++||+|+.+........+ .+....+.++++||++|+|++
T Consensus 87 ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~ 166 (176)
T d1fzqa_ 87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (176)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred eEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHH
Confidence 999999999999999888777665532 5899999999999987544333322 223345679999999999999
Q ss_pred HHHHHHHHHh
Q 030693 162 KPFLYLARKL 171 (173)
Q Consensus 162 ~~~~~i~~~i 171 (173)
|+|+||++.+
T Consensus 167 e~~~~l~~~i 176 (176)
T d1fzqa_ 167 DGMNWVCKNV 176 (176)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 9999998864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=1.8e-33 Score=186.30 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=125.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|++|+|||||+++|..+.+ ..+.+|.+....... ...+.+.+||+||++.++..+..+++.++++++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 75 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTLE----HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 75 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEEEE----ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeeecc----ccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence 468999999999999999999876654 456777776655443 366899999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhh-h-cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCR-V-CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~-~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
|+|+++..++.....++..... . ..+.|+++|+||+|+.+.....+..... ...++.+++|||++|+|+.++|
T Consensus 76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 155 (165)
T d1ksha_ 76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 155 (165)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence 9999999998888765554433 2 3689999999999998755444433221 2335678999999999999999
Q ss_pred HHHHHHhhC
Q 030693 165 LYLARKLAG 173 (173)
Q Consensus 165 ~~i~~~i~~ 173 (173)
+||.+++..
T Consensus 156 ~~l~~~i~~ 164 (165)
T d1ksha_ 156 DWLLDDISS 164 (165)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999998763
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-32 Score=183.19 Aligned_cols=156 Identities=21% Similarity=0.373 Sum_probs=127.5
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+.+||+++|.+|+|||||+++++.+.+... .++.+... ...+..++..+.+.+||++|++.+ .|++.+|++
T Consensus 2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ 74 (175)
T d2bmja1 2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV 74 (175)
T ss_dssp CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeE-EEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence 35689999999999999999999999987653 55555444 456677889999999999998764 478999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhhc----CCCCEEEEEeCCCCcc---ccccH-HHHHHHH-HcCCcEEEEccCCCCCh
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN---RQVKA-KQVTFHR-KKNLQYYEISAKSNYNF 160 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~---~~~~~-~~~~~~~-~~~~~~~~~S~~~~~~i 160 (173)
++|||+++++||+.+..|+..+.... ++.|+++|+||.|+.. +.... +...++. .+++.|++|||++|.|+
T Consensus 75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v 154 (175)
T d2bmja1 75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV 154 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence 99999999999999999988886542 4679999999988754 22333 3445654 45789999999999999
Q ss_pred HHHHHHHHHHhh
Q 030693 161 EKPFLYLARKLA 172 (173)
Q Consensus 161 ~~~~~~i~~~i~ 172 (173)
+++|..+++.++
T Consensus 155 ~~~F~~l~~~i~ 166 (175)
T d2bmja1 155 DRVFQEVAQKVV 166 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=1.2e-33 Score=189.96 Aligned_cols=158 Identities=20% Similarity=0.307 Sum_probs=123.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEE
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 89 (173)
..+++||+++|.+|||||||++++..+.+.. ..+|.+........ ..+.+.+||++|++.++..+..++..++++
T Consensus 14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 88 (182)
T d1moza_ 14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAV 88 (182)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEEEEEE----TTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEEEEee----CCEEEEEEecccccccchhHHhhhccceeE
Confidence 3567999999999999999999977666543 45666655544433 568899999999999999999999999999
Q ss_pred EEEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHH-----HHHHcCCcEEEEccCCCCChHH
Q 030693 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
++|+|++++.++.....|+...... ..+.|+++|+||+|+.+.....+..+ .+...++.+++|||++|+|+.+
T Consensus 89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e 168 (182)
T d1moza_ 89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITE 168 (182)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHH
Confidence 9999999999999888877665443 25799999999999976543333322 2233456799999999999999
Q ss_pred HHHHHHHHhh
Q 030693 163 PFLYLARKLA 172 (173)
Q Consensus 163 ~~~~i~~~i~ 172 (173)
+|++|.+.+.
T Consensus 169 ~~~~l~~~i~ 178 (182)
T d1moza_ 169 GLDWLIDVIK 178 (182)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=7e-33 Score=184.77 Aligned_cols=156 Identities=21% Similarity=0.299 Sum_probs=124.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|.+|||||||++++..+.+.. ..+|.+....... ...+.+.+||+||++.++..+..+++.+++++
T Consensus 10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii 84 (173)
T d1e0sa_ 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 84 (173)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEEEEE----ETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEEEee----ccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence 457999999999999999999987776544 3455555443332 35689999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHH-----HHHHcCCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+|+|+++.+++..+..|+....+. ..+.|+++++||+|+.+.....+... .+...++.++++||++|+|++|+
T Consensus 85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~ 164 (173)
T d1e0sa_ 85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 164 (173)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence 999999999999988877665442 36899999999999987544333322 22334567899999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
|++|.+++
T Consensus 165 ~~~l~~~~ 172 (173)
T d1e0sa_ 165 LTWLTSNY 172 (173)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99998865
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.97 E-value=2.7e-30 Score=169.61 Aligned_cols=153 Identities=21% Similarity=0.235 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEE
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 93 (173)
+||+++|++|||||||+++|..+.+...+..... .....+...+.+.+||++|.+.+...+..++..++++++++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 75 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence 5899999999999999999988877554333322 12233456789999999999999999999999999999999
Q ss_pred ECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHH-----HHHHHcCCcEEEEccCCCCChHHHHHH
Q 030693 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (173)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~i~~~~~~ 166 (173)
|..++.++..+..|+..+... ....|+++++||.|+.+.....+.. .++...++.++++||++|+|++++|++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~ 155 (160)
T d1r8sa_ 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (160)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence 999999999888777666543 3578999999999998754433332 233445678999999999999999999
Q ss_pred HHHHh
Q 030693 167 LARKL 171 (173)
Q Consensus 167 i~~~i 171 (173)
|.+++
T Consensus 156 l~~~l 160 (160)
T d1r8sa_ 156 LSNQL 160 (160)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99874
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.96 E-value=8.5e-29 Score=165.13 Aligned_cols=156 Identities=23% Similarity=0.335 Sum_probs=119.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.+++||+++|.+|||||||++++..+.+... .++.+........ ....+.+||++|.+..+..+..++..+++++
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i 87 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 87 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSSCEEEEE----TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceeEEEEee----cceEEEEeccccccccccchhhhhccceeee
Confidence 5679999999999999999999888776543 4444433333222 5678999999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHHHHH-----HHcCCcEEEEccCCCCChHHH
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~ 163 (173)
+++|.++..++.....+....... ..+.|+++|+||+|+.......+..... ...+++++++||++|+|++++
T Consensus 88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~ 167 (177)
T d1zj6a1 88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 167 (177)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHH
Confidence 999999999888776655544332 3689999999999997755444333322 334578999999999999999
Q ss_pred HHHHHHHh
Q 030693 164 FLYLARKL 171 (173)
Q Consensus 164 ~~~i~~~i 171 (173)
+++|.+++
T Consensus 168 ~~~L~~~l 175 (177)
T d1zj6a1 168 LEWMMSRL 175 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=6.6e-28 Score=161.14 Aligned_cols=155 Identities=19% Similarity=0.150 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcc--------hhhccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~~~ 85 (173)
-+|+++|.+|+|||||+++|++..... .....+++..............+.+|||||........ ..++.+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 84 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAP-ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 84 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee-ecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence 479999999999999999988665322 12333334333333333355789999999976544332 334678
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHc-CCcEEEEccCCCCChHHHH
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~ 164 (173)
+|++++|+|++++..... ..|...++....+.|+++|+||+|+.+... .....+.... ...++++||++|.|+++++
T Consensus 85 ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~ 162 (178)
T d1wf3a1 85 VNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAAKYPE-EAMKAYHELLPEAEPRMLSALDERQVAELK 162 (178)
T ss_dssp CSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-HHHHHHHHTSTTSEEEECCTTCHHHHHHHH
T ss_pred ccceeeeechhhhhcccc-cchhhheeccccchhhhhhhcccccccCHH-HHHHHHHhhcccCceEEEecCCCCCHHHHH
Confidence 999999999987643222 345566666667899999999999966431 1122333333 3578999999999999999
Q ss_pred HHHHHHh
Q 030693 165 LYLARKL 171 (173)
Q Consensus 165 ~~i~~~i 171 (173)
++|++.+
T Consensus 163 ~~i~~~l 169 (178)
T d1wf3a1 163 ADLLALM 169 (178)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 9998765
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.95 E-value=1.1e-26 Score=153.35 Aligned_cols=156 Identities=21% Similarity=0.344 Sum_probs=123.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|.+|+|||||++++..+.+... .++.+....... ...+.+.+||.+|.+.+...+..++...+++++
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVT----YKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 78 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEEEEE----ETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceeeeeec----cCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence 469999999999999999999998887643 455554443322 256789999999999999999999999999999
Q ss_pred EEECCChhhhhcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccccHHHH-----HHHHHcCCcEEEEccCCCCChHHHH
Q 030693 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
++|+.+..++.....+....... ....|+++++||.|+.+.....+.. .++...+++++++||++|.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~ 158 (169)
T d1upta_ 79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 158 (169)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 99999888777776654444322 3678999999999998765544333 2334456789999999999999999
Q ss_pred HHHHHHhh
Q 030693 165 LYLARKLA 172 (173)
Q Consensus 165 ~~i~~~i~ 172 (173)
++|.+.+.
T Consensus 159 ~~l~~~l~ 166 (169)
T d1upta_ 159 EWLVETLK 166 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.6e-27 Score=153.13 Aligned_cols=150 Identities=20% Similarity=0.349 Sum_probs=118.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 94 (173)
||+++|++|+|||||++++..+.+. ...++.+.+..... .....+.+||++|...+...+..++..++++++++|
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELA----IGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 76 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEC----CTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEec----cCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence 8999999999999999998888765 35667665554332 355778999999999999999999999999999999
Q ss_pred CCChhhhhcHHHHHHHHhhhc--CCCCEEEEEeCCCCccccccHHHHHHH------------HHcCCcEEEEccCCCCCh
Q 030693 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH------------RKKNLQYYEISAKSNYNF 160 (173)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~------------~~~~~~~~~~S~~~~~~i 160 (173)
.++..++.....|........ .+.|+++++||.|+.......+..+.. ....+.+++|||++|+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv 156 (166)
T d2qtvb1 77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 156 (166)
T ss_dssp TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence 999988887777666554432 578999999999997644333332222 122456899999999999
Q ss_pred HHHHHHHHH
Q 030693 161 EKPFLYLAR 169 (173)
Q Consensus 161 ~~~~~~i~~ 169 (173)
+|+|+||.+
T Consensus 157 ~e~~~~l~~ 165 (166)
T d2qtvb1 157 LEAFQWLSQ 165 (166)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 999999864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.94 E-value=2.7e-26 Score=153.58 Aligned_cols=156 Identities=18% Similarity=0.255 Sum_probs=113.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 90 (173)
.++.||+++|++|||||||+++|..+.+.. ..++.+.+...... ....+.+||+.++..+...+..+++..++++
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTI----AGMTFTTFDLGGHIQARRVWKNYLPAINGIV 85 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEE----TTEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccceeEEEe----cccccccccccchhhhhhHHhhhhcccceee
Confidence 567999999999999999999987776654 34555555444333 3467889999999999999999999999999
Q ss_pred EEEECCChhhhhcHHHHHHHHhh--hcCCCCEEEEEeCCCCccccccHHHHHHHHH-----------------cCCcEEE
Q 030693 91 IMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----------------KNLQYYE 151 (173)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~~ 151 (173)
+++|.++...+.....+...... ...+.|+++++||.|+.......+..+.... .++.+++
T Consensus 86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (186)
T d1f6ba_ 86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM 165 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEE
Confidence 99999999887776654444433 2368999999999999775444333333321 2346899
Q ss_pred EccCCCCChHHHHHHHHHHh
Q 030693 152 ISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i 171 (173)
|||++|+|++|+|+||++++
T Consensus 166 ~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 166 CSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp CBTTTTBSHHHHHHHHHTTC
T ss_pred EeCCCCCCHHHHHHHHHHhh
Confidence 99999999999999998764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=9.8e-28 Score=157.71 Aligned_cols=152 Identities=17% Similarity=0.191 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC--------cchhhccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIH 85 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~ 85 (173)
+||+++|.+|+|||||+++|++..... .....+.+..............+.+||+||...... ....++..
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAI-VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceE-eecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 799999999999999999987655322 223333444434444444567889999999654332 23345778
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+|++++++|..+..+......|...+.....++|+++|+||+|+.+..... ....+.+++++||++|.|++++++
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~-----~~~~~~~~~~iSAk~~~gi~~L~~ 155 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM-----SEVNGHALIRLSARTGEGVDVLRN 155 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE-----EEETTEEEEECCTTTCTTHHHHHH
T ss_pred ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHH-----HHhCCCcEEEEECCCCCCHHHHHH
Confidence 999999999999887777776666666666689999999999986643221 122457899999999999999999
Q ss_pred HHHHHh
Q 030693 166 YLARKL 171 (173)
Q Consensus 166 ~i~~~i 171 (173)
+|++.+
T Consensus 156 ~l~~~l 161 (161)
T d2gj8a1 156 HLKQSM 161 (161)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 999864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=2.3e-27 Score=160.84 Aligned_cols=155 Identities=18% Similarity=0.190 Sum_probs=118.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|..|||||||+++|..+.+. +.||.|.+..... ...+.+++||++|++.++..|..+++.++++++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 74 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFD----LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF 74 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEEEE----CSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEEEe----ccceeeeeccccccccccccccccccccceeeE
Confidence 4799999999999999999999877763 5789987665433 366889999999999999999999999999999
Q ss_pred EEECCChhh-----------hhcHHHHHHHHhhh-cCCCCEEEEEeCCCCccccc------------------cHHHHHH
Q 030693 92 MFDVTARLT-----------YKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQV------------------KAKQVTF 141 (173)
Q Consensus 92 v~d~~~~~s-----------~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~------------------~~~~~~~ 141 (173)
++|.++..+ ++....|...+... ..+.|+++++||+|+..... ......+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (200)
T d2bcjq2 75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF 154 (200)
T ss_dssp EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence 999987643 33455566666544 46899999999999753111 0011111
Q ss_pred H----H------HcCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 142 H----R------KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 142 ~----~------~~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
. . ...+.++++||++|.|+.++|+.+.+.|+
T Consensus 155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~ 195 (200)
T d2bcjq2 155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 195 (200)
T ss_dssp HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence 1 1 12344789999999999999999988775
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=2.1e-26 Score=153.97 Aligned_cols=156 Identities=14% Similarity=0.057 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccc----cCc---chhhccCCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGL---RDGYYIHGQ 87 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~---~~~~~~~~~ 87 (173)
+|+++|.+|||||||+|+|++........ ...++..............+.+|||||.... ... ....+..++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPY-PFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 81 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCC-TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecc-CCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence 48999999999999999976554322211 2222222233333445567899999995321 122 223467889
Q ss_pred EEEEEEECCChh--hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 88 CAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 88 ~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
++++++|..... .......|+........++|+++|+||+|+.++....+..+.....+.+++++||++|+|++++++
T Consensus 82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~ 161 (180)
T d1udxa2 82 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKE 161 (180)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred hhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHH
Confidence 999999987542 333333444444333347899999999999876655556666777889999999999999999999
Q ss_pred HHHHHh
Q 030693 166 YLARKL 171 (173)
Q Consensus 166 ~i~~~i 171 (173)
.|.+.+
T Consensus 162 ~i~~~l 167 (180)
T d1udxa2 162 ALHALV 167 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987765
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=1.8e-27 Score=160.78 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=110.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 91 (173)
+++||+++|..|||||||+++|..+.++. .|.... .+....+.+++||++|+++++..|..+++.++++++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~~~~~----~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~ 71 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEAG-----TGIVET----HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 71 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSCC-----CSEEEE----EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCC-----ccEEEE----EEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence 47999999999999999999987665543 333222 223366889999999999999999999999999999
Q ss_pred EEECCChhhhhc-----------HHHHHHHHhhh-cCCCCEEEEEeCCCCcccc-----------------ccHHHH---
Q 030693 92 MFDVTARLTYKN-----------VPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ-----------------VKAKQV--- 139 (173)
Q Consensus 92 v~d~~~~~s~~~-----------~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~-----------------~~~~~~--- 139 (173)
|+|+++.+++.. ...|...+... ..+.|+++++||+|+.... ...+..
T Consensus 72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
T d1svsa1 72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI 151 (195)
T ss_dssp EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence 999998876633 22344444333 3688999999999963211 001111
Q ss_pred --HHHHH------cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 140 --TFHRK------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 140 --~~~~~------~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
.+... ..+.++++||+++.|++++|+.+.+.|+
T Consensus 152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il 192 (195)
T d1svsa1 152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 192 (195)
T ss_dssp HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence 11111 2345778999999999999999988765
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.93 E-value=2.1e-26 Score=153.88 Aligned_cols=159 Identities=19% Similarity=0.111 Sum_probs=106.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCccccccc-----ceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhcc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 84 (173)
+.+.++|+++|.+|+|||||+|+|+.......... ..|.+..............+.++|+||+..+.......+.
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~ 81 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 81 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence 56789999999999999999999875332111111 1122221111122234567889999999988888888899
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH----HHHHH----cCCcEEEEccCC
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK----KNLQYYEISAKS 156 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~----~~~~~~~~S~~~ 156 (173)
.+|++++++|+.++...+.. ..+..+.. .++|+++|+||+|+.+........ .+... ...+++++||++
T Consensus 82 ~~d~~ilv~d~~~g~~~~~~-~~~~~~~~--~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~ 158 (179)
T d1wb1a4 82 IIDLALIVVDAKEGPKTQTG-EHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 158 (179)
T ss_dssp SCCEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred hccccccccccccccchhhh-hhhhhhhh--cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence 99999999999976433222 22233333 389999999999998754322211 22211 246899999999
Q ss_pred CCChHHHHHHHHHHh
Q 030693 157 NYNFEKPFLYLARKL 171 (173)
Q Consensus 157 ~~~i~~~~~~i~~~i 171 (173)
|+|++++++.|.+.+
T Consensus 159 g~gi~eL~~~I~~~l 173 (179)
T d1wb1a4 159 GFGVDELKNLIITTL 173 (179)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999998765
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=3.5e-26 Score=151.71 Aligned_cols=154 Identities=17% Similarity=0.151 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc---------CcchhhccC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYIH 85 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~~~~~ 85 (173)
+|+++|.+|+|||||+++|++... .......+.+..............+.+||++|..... .....++..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 80 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-ceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence 689999999999999999775443 2223444555554455555566789999999942211 223344678
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHH
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 165 (173)
+|+++++.+.+....... ..++..+... ++|+++|+||+|+.++.......++.+.....++++||++|.|++++++
T Consensus 81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~--~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~ 157 (171)
T d1mkya1 81 ADLVLFVVDGKRGITKED-ESLADFLRKS--TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLE 157 (171)
T ss_dssp CSEEEEEEETTTCCCHHH-HHHHHHHHHH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred CcEEEEeecccccccccc-cccccccccc--cccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHH
Confidence 999999999876543322 3344555554 8899999999999765433333344444556789999999999999999
Q ss_pred HHHHHhh
Q 030693 166 YLARKLA 172 (173)
Q Consensus 166 ~i~~~i~ 172 (173)
+|.+.+.
T Consensus 158 ~i~~~l~ 164 (171)
T d1mkya1 158 TIIKKLE 164 (171)
T ss_dssp HHHHHHH
T ss_pred HHHHhCC
Confidence 9998763
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=1.4e-25 Score=152.14 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=106.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|||||||+++| ++...+.||.|........ ....+.+||++|++.++..|..+++.+++++++
T Consensus 2 ~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~~~~~~----~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~ 74 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEI----KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL 74 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEEEEEEE----TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEEEEEee----eeeeeeeecccceeeecccccccccccceeEEE
Confidence 589999999999999999997 3556678899876654443 678999999999999999999999999999999
Q ss_pred EECCChhhh----------hcHHHHHHHHhhh--cCCCCEEEEEeCCCCccccc------------------cHHHHH--
Q 030693 93 FDVTARLTY----------KNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV------------------KAKQVT-- 140 (173)
Q Consensus 93 ~d~~~~~s~----------~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~------------------~~~~~~-- 140 (173)
+|.++..++ .....++..+... ..+.|+++++||+|+..+.. .....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 154 (200)
T d1zcba2 75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL 154 (200)
T ss_dssp EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence 999975433 2333333333222 36899999999999753110 011111
Q ss_pred --HHHH-------cCCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 141 --FHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 141 --~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
.... ..+-++++||+++.||+++|+.+.+.|+
T Consensus 155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~ 195 (200)
T d1zcba2 155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 195 (200)
T ss_dssp HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence 1111 1244668999999999999999877664
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=2.7e-25 Score=145.72 Aligned_cols=150 Identities=20% Similarity=0.159 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC---------cchhhcc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYI 84 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~~~~~~ 84 (173)
+||+++|.+|+|||||+|+|.+.... ......+.+..............+.+|||||...... .....+.
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 79 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 79 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence 68999999999999999998754422 2233333343333333333567889999999432111 1222356
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHH
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 164 (173)
.+|++++|+|++++...... .+.......|+++++||+|+.+.....+.... .....+++++||++|+|+++++
T Consensus 80 ~ad~ii~v~d~~~~~~~~~~-----~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~-~~~~~~~~~vSA~~g~gi~~L~ 153 (160)
T d1xzpa2 80 KADIVLFVLDASSPLDEEDR-----KILERIKNKRYLVVINKVDVVEKINEEEIKNK-LGTDRHMVKISALKGEGLEKLE 153 (160)
T ss_dssp HCSEEEEEEETTSCCCHHHH-----HHHHHHTTSSEEEEEEECSSCCCCCHHHHHHH-HTCSTTEEEEEGGGTCCHHHHH
T ss_pred hCCEEEEEEeCCCCcchhhh-----hhhhhcccccceeeeeeccccchhhhHHHHHH-hCCCCcEEEEECCCCCCHHHHH
Confidence 89999999999987643332 22223357789999999999876544433332 2345789999999999999999
Q ss_pred HHHHHH
Q 030693 165 LYLARK 170 (173)
Q Consensus 165 ~~i~~~ 170 (173)
++|.++
T Consensus 154 ~~I~ke 159 (160)
T d1xzpa2 154 ESIYRE 159 (160)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=3.3e-23 Score=141.14 Aligned_cols=117 Identities=20% Similarity=0.252 Sum_probs=88.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc-CcchhhccCCCEEEEEE
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAIIMF 93 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~i~v~ 93 (173)
+|+++|++|+|||||+++|+.+.+... .++.+.+....... ....+.+.+||++|++.++ ..+..++..++++++|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~ 79 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV 79 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence 689999999999999999998877654 46666655544332 4466889999999998875 56788889999999999
Q ss_pred ECCChhhh-hcHHHHHHHH-hhh---cCCCCEEEEEeCCCCcccc
Q 030693 94 DVTARLTY-KNVPTWHRDL-CRV---CENIPIVLCGNKVDVKNRQ 133 (173)
Q Consensus 94 d~~~~~s~-~~~~~~~~~~-~~~---~~~~p~ivv~nK~Dl~~~~ 133 (173)
|+++..++ .....++..+ ... ..+.|++||+||+|+.+..
T Consensus 80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~ 124 (207)
T d2fh5b1 80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124 (207)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence 99987653 3444444333 222 2468999999999997643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=7.6e-23 Score=137.07 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=97.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc------------Cc
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------------GL 78 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------------~~ 78 (173)
...+||+++|.+|+|||||+|+|++...... ....+++...........+..+.++|+||..... ..
T Consensus 6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 6 TDAIKVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCccee-ecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence 3469999999999999999999876543211 1112222222222222234567888999854322 22
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc-c-HHHHHHHHH-----cCCcEEE
Q 030693 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRK-----KNLQYYE 151 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~~-----~~~~~~~ 151 (173)
....++.+|++++|+|+..+.. .....+...+... +.|+++|+||+|+..... . .+..+...+ ...++++
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~~--~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 161 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMERR--GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 161 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT--TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhcCCEEEEeecccccch-hhHHHHHHHHHHc--CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEE
Confidence 3334678999999999986533 2223344444443 789999999999864322 1 122222222 2357899
Q ss_pred EccCCCCChHHHHHHHHHHh
Q 030693 152 ISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 152 ~S~~~~~~i~~~~~~i~~~i 171 (173)
+||++|.|+++++++|.+.+
T Consensus 162 vSa~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 162 TSADKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999997654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=3.1e-24 Score=143.89 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=95.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc----ccCcchhh---ccCCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGY---YIHGQ 87 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~~ 87 (173)
+|+++|.+|||||||+|+|.+.... .......++..............+.+|||||..+ .......+ +..++
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 81 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCc-eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence 6899999999999999997654432 1111111111112222222345788999999532 22222222 45688
Q ss_pred EEEEEEECCChhhhhcHHHHHH--HHhh----hcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChH
Q 030693 88 CAIIMFDVTARLTYKNVPTWHR--DLCR----VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (173)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~--~~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 161 (173)
.++++++............+.. .... ...++|+++|+||+|+.+.....+........+.+++++||++|.|++
T Consensus 82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~ 161 (185)
T d1lnza2 82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLR 161 (185)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTH
T ss_pred hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCCHH
Confidence 9988888775543332222111 1111 124789999999999986532222222122236788999999999999
Q ss_pred HHHHHHHHHh
Q 030693 162 KPFLYLARKL 171 (173)
Q Consensus 162 ~~~~~i~~~i 171 (173)
+++++|.+.+
T Consensus 162 ~L~~~i~~~L 171 (185)
T d1lnza2 162 ELLFEVANQL 171 (185)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998876
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=5.8e-23 Score=137.35 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccccc---------------Ccc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------------GLR 79 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------------~~~ 79 (173)
.|+++|.+|+|||||+|+|++.... .....|+|.....+... .+.+|||||..... ...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~--~~~~~g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~ 75 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 75 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS--SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce--eeCCCCEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence 6899999999999999998765542 23444455444444322 36789999953221 112
Q ss_pred hhhccCCCEEEEEEECCChhhhhc---------HH-HHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHc----
Q 030693 80 DGYYIHGQCAIIMFDVTARLTYKN---------VP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---- 145 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~---------~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---- 145 (173)
...++.+|++++|+|......... .. ..+..+.. .++|+++|+||+|+....... ...+....
T Consensus 76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~~~-~~~~~~~~~~~~ 152 (184)
T d2cxxa1 76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEV-INFLAEKFEVPL 152 (184)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHH-HHHHHHHHTCCG
T ss_pred hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHHHH-HHHHHHHhcccc
Confidence 234567899999999975432111 11 12333333 389999999999976432111 11111111
Q ss_pred ---CCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 146 ---NLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 146 ---~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
...++++||++|.|+++++++|.+.+-
T Consensus 153 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 153 SEIDKVFIPISAKFGDNIERLKNRIFEVIR 182 (184)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence 234889999999999999999988653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.89 E-value=2.9e-23 Score=140.26 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=104.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCcccc---cc--cc--eeEEEEEEEE-----------------EecCcEEEEEE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YE--PT--IGVEVHPLDF-----------------FTNCGKIRFYC 66 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~--~~--~~~~~~~~~~-----------------~~~~~~~~~~~ 66 (173)
.+.++|+++|..++|||||+++|++...... .. .+ .+........ ........+.+
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 4579999999999999999999865321110 00 01 1111111110 00112467899
Q ss_pred EeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH----HHHH
Q 030693 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFH 142 (173)
Q Consensus 67 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~ 142 (173)
+|+||+..|.......+..+|++++|+|+.+....+.....+..+... ...++++++||+|+.+.....+. .++.
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~ 161 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYRQIKEFI 161 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCccceeeeecccchhhHHHHHHHHHHHHHh
Confidence 999999999888888888999999999998763222233333333333 23347888999999874432222 2333
Q ss_pred HHc---CCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 143 RKK---NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 143 ~~~---~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
... .++++++||++|+|++++++.+.+.+
T Consensus 162 ~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 162 EGTVAENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 322 36799999999999999999988765
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.2e-22 Score=137.06 Aligned_cols=152 Identities=11% Similarity=0.076 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC-------------cch
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------------LRD 80 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------------~~~ 80 (173)
.+|+|+|.+|||||||+|+|.+...........+.+.......... .+.+.|++|...... ...
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence 4899999999999999999876544333333444443333333222 344566666322211 122
Q ss_pred hhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH-HHHH----HcCCcEEEEccC
Q 030693 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHR----KKNLQYYEISAK 155 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~----~~~~~~~~~S~~ 155 (173)
..+..++++++++|++.+... ....+++.+... ++|+++|+||+|+..+....+.. .... ....+++++||+
T Consensus 101 ~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 177 (195)
T d1svia_ 101 TTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY--GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSE 177 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTT
T ss_pred ccccchhhhhhhhhccccccc-cccccccccccc--cCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCC
Confidence 334567999999999865321 123444555544 88999999999986544333322 2222 244678999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030693 156 SNYNFEKPFLYLARKL 171 (173)
Q Consensus 156 ~~~~i~~~~~~i~~~i 171 (173)
+|.|+++++++|.+.+
T Consensus 178 ~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 178 TKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998875
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.89 E-value=5.6e-23 Score=141.87 Aligned_cols=152 Identities=19% Similarity=0.204 Sum_probs=97.9
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCcccccccce--eEEEEEEE--------------EEecCcEEEEEEEeCCCcccccCcc
Q 030693 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI--GVEVHPLD--------------FFTNCGKIRFYCWDTAGQEKFGGLR 79 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~~~~~~D~~G~~~~~~~~ 79 (173)
|+|+|.+++|||||+++|+............ ........ ..+......+.++||||++.|....
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~ 87 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR 87 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence 9999999999999999987542211100000 00000000 0122344578999999999998888
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH----------------------H
Q 030693 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----------------------K 137 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------------------~ 137 (173)
...+..+|++++|+|+.++-..+. ...+..+... ++|+++|+||+|+.+..... .
T Consensus 88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 164 (227)
T d1g7sa4 88 KRGGALADLAILIVDINEGFKPQT-QEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTK 164 (227)
T ss_dssp CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHH
T ss_pred hhcccccceEEEEEecccCcccch-hHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHH
Confidence 888999999999999987533222 2233344443 89999999999986522100 0
Q ss_pred HH----HHHHH--------------cCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 138 QV----TFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 138 ~~----~~~~~--------------~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
.. .+... ...+++++||++|.|++++++.+...
T Consensus 165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l 215 (227)
T d1g7sa4 165 VYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (227)
T ss_dssp HHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 00 01100 11368999999999999999988653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=5.4e-23 Score=141.42 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=108.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhccCCCEEEEE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 92 (173)
.+||+++|.+|||||||++++..+. ..||.|.......+ ..+.+.+||++|++.++..|..++.++++++++
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~~~~~----~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v 77 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETKFQV----DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV 77 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEEEEEE----TTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEEEEEE----CcEEEEEEecCccceeccchhhhcccccceEEE
Confidence 5899999999999999999986554 35788866554443 568999999999999999999999999999999
Q ss_pred EECCChhh----------hhcHHHHHHHH-hhh-cCCCCEEEEEeCCCCccccc-----c--------------------
Q 030693 93 FDVTARLT----------YKNVPTWHRDL-CRV-CENIPIVLCGNKVDVKNRQV-----K-------------------- 135 (173)
Q Consensus 93 ~d~~~~~s----------~~~~~~~~~~~-~~~-~~~~p~ivv~nK~Dl~~~~~-----~-------------------- 135 (173)
+|.++... ..+...++..+ ... ..++|++|++||+|+..... .
T Consensus 78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~ 157 (221)
T d1azta2 78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE 157 (221)
T ss_dssp EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence 99986432 22222222222 222 36899999999999854210 0
Q ss_pred -------HHHH-----HHHHHc--------CCcEEEEccCCCCChHHHHHHHHHHhh
Q 030693 136 -------AKQV-----TFHRKK--------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (173)
Q Consensus 136 -------~~~~-----~~~~~~--------~~~~~~~S~~~~~~i~~~~~~i~~~i~ 172 (173)
.+.. .+.+.. .+-.+++||.++.+++.+|+.+.+.|+
T Consensus 158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~ 214 (221)
T d1azta2 158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ 214 (221)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHH
Confidence 0011 111111 123568999999999999988766554
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.89 E-value=7.1e-22 Score=134.33 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=104.3
Q ss_pred CCCCCeeEEEEEcCCCCCHHHHHHHHhhCCcccc---c----ccceeEEEEEEEEEe----------------------c
Q 030693 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---Y----EPTIGVEVHPLDFFT----------------------N 58 (173)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~----~~~~~~~~~~~~~~~----------------------~ 58 (173)
+...+.++|+++|..++|||||+++|++...... . ....+.......... .
T Consensus 3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (205)
T d2qn6a3 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 82 (205)
T ss_dssp CCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred CCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccc
Confidence 3456679999999999999999999875221100 0 001111111111100 0
Q ss_pred CcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH
Q 030693 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 138 (173)
Q Consensus 59 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 138 (173)
.....+.++|+||+..|.......+..+|++++|+|+.+.-.-...+..+..+.. ..-.|+++++||+|+.+.......
T Consensus 83 ~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i~~iIV~vNK~Dl~~~~~~~~~ 161 (205)
T d2qn6a3 83 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVKNLIIVQNKVDVVSKEEALSQ 161 (205)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECGGGSCHHHHHHH
T ss_pred cceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCCceeeeccccCCCccchHHHHH
Confidence 1134789999999999988878888899999999999875211112222222222 223588999999999764433322
Q ss_pred H----HHHHHc---CCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 139 V----TFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 139 ~----~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
. ++.... +++++++||++|.|++++++.|...+
T Consensus 162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i 201 (205)
T d2qn6a3 162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 201 (205)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence 2 222222 46799999999999999999988765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.87 E-value=2.8e-22 Score=135.02 Aligned_cols=158 Identities=11% Similarity=-0.001 Sum_probs=109.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC-----Cc---------ccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG-----EF---------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
+.++|+++|..++|||||+++|+.. .. ........|.+.......+......+.++|+||+..|..
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~ 81 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence 4699999999999999999997641 00 001122335565555556666778899999999999988
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-----HHHHHHHHc-----CC
Q 030693 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-----KQVTFHRKK-----NL 147 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~-----~~ 147 (173)
.....+..+|++++|+|+.+...-+.. ..+..+... ...|+++++||+|+....... +...+.... .+
T Consensus 82 ~~~~~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~-~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 159 (196)
T d1d2ea3 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI-GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEET 159 (196)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT-TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred HHHHHHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHh-cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 888888999999999999986433322 222222222 345799999999986532211 222333333 25
Q ss_pred cEEEEccCCC----------CChHHHHHHHHHHh
Q 030693 148 QYYEISAKSN----------YNFEKPFLYLARKL 171 (173)
Q Consensus 148 ~~~~~S~~~~----------~~i~~~~~~i~~~i 171 (173)
+++++|+++| .++.++++.+.+.+
T Consensus 160 pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i 193 (196)
T d1d2ea3 160 PIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (196)
T ss_dssp CEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred EEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence 6999999988 58899999887654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=9.4e-21 Score=128.42 Aligned_cols=141 Identities=17% Similarity=0.117 Sum_probs=94.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhC--------Ccccc-------cccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
++++|+++|.+++|||||+++|+.. ..... .....|++.......+......+.++||||+..|.
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~ 81 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 81 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence 5799999999999999999998631 00000 00111445444444555566788999999999999
Q ss_pred CcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc-----cHHHHHHHHHc-----
Q 030693 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKK----- 145 (173)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-----~~~~~~~~~~~----- 145 (173)
......+..+|++++|+|+.++-..+....| ...... ++| +++++||+|+.+... ..+...+....
T Consensus 82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~~--gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~ 158 (204)
T d2c78a3 82 KNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGD 158 (204)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHHc--CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8888889999999999999987554443322 333333 666 778899999865321 11222333332
Q ss_pred CCcEEEEccC
Q 030693 146 NLQYYEISAK 155 (173)
Q Consensus 146 ~~~~~~~S~~ 155 (173)
.+++++.|+.
T Consensus 159 ~i~~i~~sa~ 168 (204)
T d2c78a3 159 EVPVIRGSAL 168 (204)
T ss_dssp TSCEEECCHH
T ss_pred cceeeeeech
Confidence 2568888875
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.82 E-value=2.1e-19 Score=122.98 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=95.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhh--CCcccc-----------------------------cccceeEEEEEEEEEec
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------------------------YEPTIGVEVHPLDFFTN 58 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 58 (173)
+...+||+++|..++|||||+++|+. +..... .....+.+.........
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 34579999999999999999999863 211100 00011122222222333
Q ss_pred CcEEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc---
Q 030693 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV--- 134 (173)
Q Consensus 59 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--- 134 (173)
.....+.++|+||++.|..........+|++++|+|+.+...-+... .-.+... .++| +++++||+|+.+...
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e--~~~~~~~-~gv~~iiv~vNK~D~~~~~~~~~ 162 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASL-LGIKHIVVAINKMDLNGFDERVF 162 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHH-TTCCEEEEEEECTTTTTSCHHHH
T ss_pred ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH--HHHHHHH-cCCCEEEEEEEccccccccceeh
Confidence 45578999999999999988888889999999999998764333222 2222222 2555 788999999976221
Q ss_pred ---cHHHHHHHHHcC-----CcEEEEccCCCCChH
Q 030693 135 ---KAKQVTFHRKKN-----LQYYEISAKSNYNFE 161 (173)
Q Consensus 135 ---~~~~~~~~~~~~-----~~~~~~S~~~~~~i~ 161 (173)
..+...+....+ ++++++||++|+|+.
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 163 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 112223444433 467999999999883
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=2.1e-19 Score=119.25 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCccc---------ccCcchhhcc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGYYI 84 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~ 84 (173)
-.|+++|.+|+|||||+|+|.+...... ....+++..............+..+|++|... ..........
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISIT-SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 84 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEEC-CCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceee-ccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchh
Confidence 3589999999999999999876553221 11222222222222222445667788887421 2223333455
Q ss_pred CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc--cHHHHHHHHHcC-CcEEEEccCCCCChH
Q 030693 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKN-LQYYEISAKSNYNFE 161 (173)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~-~~~~~~S~~~~~~i~ 161 (173)
.+++++++.|..+... ....+...+.+ ...|.++++||+|...... .........+.+ .+++++||++|.|++
T Consensus 85 ~~~~~l~~~d~~~~~~--~~~~~~~~l~~--~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 160 (179)
T d1egaa1 85 DVELVIFVVEGTRWTP--DDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD 160 (179)
T ss_dssp CEEEEEEEEETTCCCH--HHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred hcceeEEEEecCccch--hHHHHHHHhhh--ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHH
Confidence 6788888888775432 12222333333 3778999999999766432 222234444444 589999999999999
Q ss_pred HHHHHHHHHh
Q 030693 162 KPFLYLARKL 171 (173)
Q Consensus 162 ~~~~~i~~~i 171 (173)
+++++|.+.+
T Consensus 161 ~L~~~i~~~l 170 (179)
T d1egaa1 161 TIAAIVRKHL 170 (179)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 9999998765
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.2e-19 Score=123.22 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=80.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchhhc----cCCCE
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY----IHGQC 88 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~----~~~~~ 88 (173)
+.+|+++|++|+|||||+|+|+++.+.+. ++...........+..+.+||+||++.++..+..++ ..++.
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~------tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~ 76 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT------VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG 76 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB------CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCe------EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence 45899999999999999999988765432 122223334445666789999999998776665554 34588
Q ss_pred EEEEEECCC-hhhhhcHHHHHHHHh----hh-cCCCCEEEEEeCCCCccc
Q 030693 89 AIIMFDVTA-RLTYKNVPTWHRDLC----RV-CENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 89 ~i~v~d~~~-~~s~~~~~~~~~~~~----~~-~~~~p~ivv~nK~Dl~~~ 132 (173)
+++++|+.+ ..++.....|+..+. .. ..++|+++|+||+|+.+.
T Consensus 77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 126 (209)
T ss_dssp EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence 899999774 455555555544332 22 258999999999998763
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2.4e-18 Score=114.64 Aligned_cols=158 Identities=12% Similarity=0.009 Sum_probs=82.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEE-EEEecCcEEEEEEEeCCCcccccCc----------
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL-DFFTNCGKIRFYCWDTAGQEKFGGL---------- 78 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~---------- 78 (173)
....++|+++|.+|+|||||+|++.+...... ....+.+.... ..........+..++.++.......
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLAR-TSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE 91 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCCceEe-ecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence 45579999999999999999999776554332 22222222222 2222222223332333222211111
Q ss_pred chhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHH----HHHHHc--CCcEEEE
Q 030693 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRKK--NLQYYEI 152 (173)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~~--~~~~~~~ 152 (173)
..........++.+.+......... ..++..+.. ...++++++||+|+.+........ +..... ..+++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v 168 (188)
T d1puia_ 92 YLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 168 (188)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred hhhhhhheeEEEEeecccccchhHH-HHHHHHhhh--ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1111223445555666554432222 233334333 378899999999987643322222 222222 3578999
Q ss_pred ccCCCCChHHHHHHHHHHh
Q 030693 153 SAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 153 S~~~~~~i~~~~~~i~~~i 171 (173)
||++|.|++++++.|.+-+
T Consensus 169 SA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 169 SSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999987643
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.77 E-value=8.4e-19 Score=120.45 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=95.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh--CCccc---------------------------ccccceeEEEEEEEEEecCcEE
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCGKI 62 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 62 (173)
+.++|+++|..++|||||+.+|+. +.... ......|.+........+...+
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 479999999999999999999763 11000 0011223333333334455667
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhh-----hcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccH-
Q 030693 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY-----KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA- 136 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-----~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~- 136 (173)
.+.++||||+..|.........-+|++++|+|+.+...- .........+.......++++++||+|+.......
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~ 161 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK 161 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHH
Confidence 899999999999999999999999999999999986321 11122222222223344688899999987532221
Q ss_pred -------HHHHHHHHc-----CCcEEEEccCCCCChHH
Q 030693 137 -------KQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (173)
Q Consensus 137 -------~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 162 (173)
....+.... .++++++||..|.|+.+
T Consensus 162 ~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 162 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 112333332 35689999999999854
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.76 E-value=3.3e-18 Score=118.68 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=83.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh--CCcccc---------------------------cccceeEEEEEEEEEecCcE
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (173)
.+.++|+++|..++|||||+.+|+. +..... .....|.+............
T Consensus 22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 101 (245)
T d1r5ba3 22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 101 (245)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence 3468999999999999999999853 211100 00011122221122233355
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhh---h--h-cHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y--K-NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~-~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~ 134 (173)
..+.+.|+||+..|..........+|++++|+|+.+... + . .....+..+... ++| +++++||+|+.....
T Consensus 102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~--~i~~iiv~iNKmD~~~~~~ 179 (245)
T d1r5ba3 102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVINKMDEPSVQW 179 (245)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTCSS
T ss_pred ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc--CCCeEEEEEEcCCCCccch
Confidence 689999999999999988888999999999999987521 1 1 122222222222 554 889999999875332
Q ss_pred cHH--------HHHHHHHc-------CCcEEEEccCCCCChHHHH
Q 030693 135 KAK--------QVTFHRKK-------NLQYYEISAKSNYNFEKPF 164 (173)
Q Consensus 135 ~~~--------~~~~~~~~-------~~~~~~~S~~~~~~i~~~~ 164 (173)
.++ ...+.... .++++++||++|+|+.+++
T Consensus 180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence 221 11111111 2579999999999998754
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=1.8e-18 Score=119.47 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=98.2
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhh--CCccc---------------------------ccccceeEEEEEEEEEecCc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (173)
+.+.++|+++|..++|||||+.+|+. +.... ......|.+...-...+...
T Consensus 3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~ 82 (239)
T d1f60a3 3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 82 (239)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence 34569999999999999999999863 21110 00011234443333344446
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhh-----hhcHHHHHHHHhhhcCCCC-EEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-----YKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-----~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~ 134 (173)
.+++.+.|+||+..|..........+|++++|+|+....- .+.-....-.+... -++| +++++||+|+.+...
T Consensus 83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~-~gv~~iiv~iNKmD~~~~d~ 161 (239)
T d1f60a3 83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGVRQLIVAVNKMDSVKWDE 161 (239)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTCCEEEEEEECGGGGTTCH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH-cCCCeEEEEEECCCCCCCCH
Confidence 6899999999999999888888999999999999986521 11112222222222 2665 788999999876221
Q ss_pred ------cHHHHHHHHHcC-----CcEEEEccCCCCChH
Q 030693 135 ------KAKQVTFHRKKN-----LQYYEISAKSNYNFE 161 (173)
Q Consensus 135 ------~~~~~~~~~~~~-----~~~~~~S~~~~~~i~ 161 (173)
..+...+....+ ++++++|+..|.|+.
T Consensus 162 ~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~ 199 (239)
T d1f60a3 162 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 199 (239)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence 122233443333 568999999998863
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=1.6e-17 Score=116.47 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CCcccc--------------cccceeEEEEEEEEEecCcEEEEEEEeCCCcccccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
.+|+++|+.++|||||+++++. +..... .....+.+.......+...+..+.++||||+..|..
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~ 86 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI 86 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence 3699999999999999999863 211100 000112222222233344667899999999999999
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEE
Q 030693 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (173)
.....++.+|++|+|+|+.+.-..+..+-| +....+ ++|.++++||+|........-..++....+...++
T Consensus 87 e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~--~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp 157 (276)
T d2bv3a2 87 EVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKY--KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV 157 (276)
T ss_dssp THHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTT--TCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHHc--CCCEEEEEecccccccccchhHHHHHHHhCCCeEE
Confidence 999999999999999999987654544444 444444 99999999999998877666556666666665544
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=2.7e-16 Score=116.23 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=90.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCccccc---ccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcchh-----hc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-----YY 83 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~-----~~ 83 (173)
..++|+++|.+|+|||||+|+|++....... ....+++.....+... ....+.+|||||.......... .+
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~ 133 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF 133 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence 4699999999999999999998764432211 1222334333333322 2335789999997654433222 35
Q ss_pred cCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcccc--------c-cH----HH----HHHHHHcC
Q 030693 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------V-KA----KQ----VTFHRKKN 146 (173)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------~-~~----~~----~~~~~~~~ 146 (173)
..+|.++++.|..-.+.. ...+..+.+. ++|+++|.||+|..... . .+ +. .......+
T Consensus 134 ~~~d~~l~~~~~~~~~~d---~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~ 208 (400)
T d1tq4a_ 134 YEYDFFIIISATRFKKND---IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 208 (400)
T ss_dssp GGCSEEEEEESSCCCHHH---HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hcceEEEEecCCCCCHHH---HHHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence 578888888775433221 2334444444 88999999999963110 0 01 11 11122222
Q ss_pred ---CcEEEEccCC--CCChHHHHHHHHHHh
Q 030693 147 ---LQYYEISAKS--NYNFEKPFLYLARKL 171 (173)
Q Consensus 147 ---~~~~~~S~~~--~~~i~~~~~~i~~~i 171 (173)
.++|.+|... ..++.++.+.+.+.+
T Consensus 209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L 238 (400)
T d1tq4a_ 209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDL 238 (400)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence 3478888754 458999999887754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.67 E-value=2.1e-16 Score=110.42 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CCcccc----ccc----------ceeEEEEEEEEEecCcEEEEEEEeCCCcccccC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKK----YEP----------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~--~~~~~~----~~~----------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 77 (173)
.+|+++|+.++|||||+++++. +..... ... ..+.+...-...+...+..+.++||||+..|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence 3699999999999999999863 111100 000 011122211222233556889999999999999
Q ss_pred cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCc
Q 030693 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (173)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (173)
.....++.+|++++|+|+.++-..+....| ....+. ++|.++++||+|..
T Consensus 83 e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~--~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL--GLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCEEEEEECGGGC
T ss_pred hhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc--cccccccccccccc
Confidence 999999999999999999987654444434 344443 89999999999963
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=7.3e-16 Score=111.01 Aligned_cols=116 Identities=16% Similarity=0.236 Sum_probs=79.4
Q ss_pred ee-EEEEEcCCCCCHHHHHHHHhh--CCccccc------------ccceeEEE--EEEEEEe--------------cCcE
Q 030693 13 SF-KLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEV--HPLDFFT--------------NCGK 61 (173)
Q Consensus 13 ~~-~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~--~~~~~~~--------------~~~~ 61 (173)
.+ +|+|+|..++|||||+++|+. +...... ....|.+. ....... ++..
T Consensus 16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 95 (341)
T d1n0ua2 16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 95 (341)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence 45 599999999999999999863 1111000 00011111 1111111 2356
Q ss_pred EEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCcc
Q 030693 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
+.+.++||||+..|.......++-+|++++|+|+.++-..+...-|.... .. ++|+++++||+|...
T Consensus 96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~~--~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE--RIKPVVVINKVDRAL 162 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT--TCEEEEEEECHHHHH
T ss_pred eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-Hc--CCCeEEEEECccccc
Confidence 78999999999999999999999999999999999876555544443333 32 899999999999643
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.61 E-value=4.3e-15 Score=103.65 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=74.1
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcccccCcch-------h-
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-------G- 81 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~- 81 (173)
+...++|+++|.+|+|||||+|.+++...... .+..++|...........+..+.++||||......... .
T Consensus 29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~v-s~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~ 107 (257)
T d1h65a_ 29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 107 (257)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhCCCceee-cCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence 35679999999999999999999887654322 23334444433333333556899999999543221111 1
Q ss_pred -hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcC---CCCEEEEEeCCCCcc
Q 030693 82 -YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (173)
Q Consensus 82 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 131 (173)
.....+++++|++++...--......+..+...+. -.++++|+||+|...
T Consensus 108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence 12356899999988754211112223333333321 347899999999864
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.51 E-value=9.2e-15 Score=100.87 Aligned_cols=108 Identities=17% Similarity=0.071 Sum_probs=64.4
Q ss_pred EEEEEEEeCCCcccccCcchh---h--ccCCCEEEEEEECCCh---hhhhcHHHHHHH-HhhhcCCCCEEEEEeCCCCcc
Q 030693 61 KIRFYCWDTAGQEKFGGLRDG---Y--YIHGQCAIIMFDVTAR---LTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN 131 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~---~--~~~~~~~i~v~d~~~~---~s~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~ 131 (173)
...+.+.|+||+..+...... + ....+.+++++|+... ............ ..+. ..|.++++||+|+..
T Consensus 94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLS 171 (244)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCC
T ss_pred ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeecccccc
Confidence 345889999998754332222 1 1245688889997643 222211111111 1122 789999999999875
Q ss_pred ccccHHHH----------------------------HHHH--HcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 132 RQVKAKQV----------------------------TFHR--KKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 132 ~~~~~~~~----------------------------~~~~--~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
........ .... ...++++++||++|+|++++++.|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 32111000 0001 134689999999999999999988764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=2e-13 Score=97.82 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=58.1
Q ss_pred EEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH----
Q 030693 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ---- 138 (173)
Q Consensus 63 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---- 138 (173)
.+.+++|.|.... -..+...+|.+++|.++...+..+..+.-+-++- + ++|+||+|+.........
T Consensus 148 d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~a----D---i~VvNKaD~~~~~~~~~~~~~~ 217 (327)
T d2p67a1 148 DVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVA----D---LIVINKDDGDNHTNVAIARHMY 217 (327)
T ss_dssp SEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCHHHHHHC----S---EEEECCCCTTCHHHHHHHHHHH
T ss_pred CeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhchhhhccc----c---EEEEEeecccchHHHHHHHHHH
Confidence 4555666554321 1235567999999998887766665554433332 2 788899998763322111
Q ss_pred HHHHH-------HcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 139 VTFHR-------KKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 139 ~~~~~-------~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
..... .+..+++.+||.+|+|++++++.|.+.
T Consensus 218 ~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~ 256 (327)
T d2p67a1 218 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 256 (327)
T ss_dssp HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHH
Confidence 11111 123578999999999999999998753
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.41 E-value=1.1e-12 Score=93.80 Aligned_cols=100 Identities=10% Similarity=0.039 Sum_probs=62.2
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHH-HH
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV 139 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~ 139 (173)
++.+.+++|.|..... ......+|..++|..+...+..+..+.-+-++. =++|+||+|+.+...... ..
T Consensus 143 g~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~a-------Di~vvNKaD~~~~~~~~~~~~ 212 (323)
T d2qm8a1 143 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFELA-------DMIAVNKADDGDGERRASAAA 212 (323)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHHHC-------SEEEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhhhh-------heeeEeccccccchHHHHHHH
Confidence 4677888888765322 224455999999999998765554443222221 278899999876432221 11
Q ss_pred -HHHH----------HcCCcEEEEccCCCCChHHHHHHHHHH
Q 030693 140 -TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARK 170 (173)
Q Consensus 140 -~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~ 170 (173)
.+.. ....+++.+||.+++|+++++++|.+.
T Consensus 213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~ 254 (323)
T d2qm8a1 213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 254 (323)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 1111 134579999999999999999998654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.20 E-value=1.3e-10 Score=83.02 Aligned_cols=83 Identities=24% Similarity=0.232 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccccc------ccceeEEEEEEEEEe----------------cCcEEEEEEEeCCC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY------EPTIGVEVHPLDFFT----------------NCGKIRFYCWDTAG 71 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~~G 71 (173)
++|+++|.||||||||+|++.+.+..... .|..|+......... ......++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 48999999999999999997654432111 112233221111110 11236799999999
Q ss_pred cccc----cCcch---hhccCCCEEEEEEECC
Q 030693 72 QEKF----GGLRD---GYYIHGQCAIIMFDVT 96 (173)
Q Consensus 72 ~~~~----~~~~~---~~~~~~~~~i~v~d~~ 96 (173)
.-.. ..+.. ..++.+|++++|+|+.
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETT
T ss_pred cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence 4221 12222 2356899999999986
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=4.1e-10 Score=79.65 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=42.8
Q ss_pred EEEEEeCCCccccc-------------CcchhhccCCC-EEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 63 RFYCWDTAGQEKFG-------------GLRDGYYIHGQ-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 63 ~~~~~D~~G~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.+.++|+||..... .+...|+...+ ++++|.++...-+-.....+...+... ..++++|+||+|
T Consensus 126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~--~~r~i~Vltk~D 203 (299)
T d2akab1 126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLD 203 (299)
T ss_dssp SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGG
T ss_pred CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcC--CCceeeEEeccc
Confidence 37899999953221 22344556665 556677776554444444555555443 467999999999
Q ss_pred Cccc
Q 030693 129 VKNR 132 (173)
Q Consensus 129 l~~~ 132 (173)
..+.
T Consensus 204 ~~~~ 207 (299)
T d2akab1 204 LMDE 207 (299)
T ss_dssp GSCT
T ss_pred cccc
Confidence 8653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.01 E-value=7.9e-10 Score=78.42 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=41.5
Q ss_pred EEEEEeCCCcccc-------------cCcchhhccCCCEEEEEE-ECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 63 RFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMF-DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 63 ~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.+.++|+||.... ..+...|+..++.+++++ +......-.....+...+... ..++++|+||+|
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~--~~r~i~Vitk~D 209 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE--GKRTIGVITKLD 209 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS--CSSEEEEEECTT
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcC--CCeEEEEEeccc
Confidence 4679999995321 134556788888766554 544433334444455554432 457999999999
Q ss_pred Ccc
Q 030693 129 VKN 131 (173)
Q Consensus 129 l~~ 131 (173)
..+
T Consensus 210 ~~~ 212 (306)
T d1jwyb_ 210 LMD 212 (306)
T ss_dssp SSC
T ss_pred ccc
Confidence 864
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.91 E-value=1.1e-09 Score=76.44 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=36.9
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhhCCcccccccceeEEEEEEEEEecCcEEEEEEEeCCCcc
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 73 (173)
....++|+|+|.||||||||+|++.+.. .....+.+|+|.....+..+. .+.++||||.-
T Consensus 109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~-~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi~ 168 (273)
T d1puja_ 109 KPRAIRALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 168 (273)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSC-CC------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEEecCccchhhhhhhhhccc-eEEECCcccccccceEEECCC---CeEEecCCCcc
Confidence 3457999999999999999999977654 334567778777655554332 48899999964
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.91 E-value=1.4e-09 Score=76.23 Aligned_cols=81 Identities=22% Similarity=0.123 Sum_probs=48.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCccccccc--ceeEEEEEEEEEecC------------cE---EEEEEEeCCCcc---
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNC------------GK---IRFYCWDTAGQE--- 73 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~------------~~---~~~~~~D~~G~~--- 73 (173)
+||.++|.|+||||||++++..........| |....... +.+.+ .. ..+.+.|+||--
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv--v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga 80 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV--VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE--EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEE--EecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence 7999999999999999999776543221111 11111111 22211 11 258899999942
Q ss_pred -cccCcchh---hccCCCEEEEEEECC
Q 030693 74 -KFGGLRDG---YYIHGQCAIIMFDVT 96 (173)
Q Consensus 74 -~~~~~~~~---~~~~~~~~i~v~d~~ 96 (173)
+...+... .++++|++++|+|..
T Consensus 81 ~~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 81 SKGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred ccCCCccHHHHHHHHhccceEEEeecc
Confidence 22233333 367899999999863
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.84 E-value=7.9e-09 Score=72.88 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=52.7
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhhCCc--ccccccceeEEEEE--EEEEecC---------------cEEEEEEEeCCC
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHP--LDFFTNC---------------GKIRFYCWDTAG 71 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~~~~D~~G 71 (173)
...+||.++|.|+||||||++++..... ...++ ++|..+ -.+.+.+ ....+++.|+||
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anyp---ftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaG 84 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP---YATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 84 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS---SCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCC---ccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccc
Confidence 3568999999999999999999775432 22221 112111 1122221 124788999998
Q ss_pred ccc----ccCcchhh---ccCCCEEEEEEECCC
Q 030693 72 QEK----FGGLRDGY---YIHGQCAIIMFDVTA 97 (173)
Q Consensus 72 ~~~----~~~~~~~~---~~~~~~~i~v~d~~~ 97 (173)
.-. ...+-..| ++.+|++++|+|+.+
T Consensus 85 Lv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 85 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 432 22233333 678999999999864
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.74 E-value=2.5e-08 Score=69.44 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=65.8
Q ss_pred hhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCC
Q 030693 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (173)
...+..+|++++|.|+.+|.+...- .+.+...++|.++|+||+|+.+.....+-.+.....+...+.+|+.++.+
T Consensus 10 ~~~i~~~DvIl~V~DaR~P~ss~~~-----~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~ 84 (273)
T d1puja_ 10 TEKLKLIDIVYELVDARIPMSSRNP-----MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG 84 (273)
T ss_dssp HHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred HHHHHhCCEEEEEEECCCCCCCCCH-----HHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCC
Confidence 4468899999999999988765442 22233348899999999999887655555556666778899999999999
Q ss_pred hHHHHHHHHHH
Q 030693 160 FEKPFLYLARK 170 (173)
Q Consensus 160 i~~~~~~i~~~ 170 (173)
..++.+.+.+.
T Consensus 85 ~~~~~~~~~~~ 95 (273)
T d1puja_ 85 LNQIVPASKEI 95 (273)
T ss_dssp GGGHHHHHHHH
T ss_pred ccccchhhhhh
Confidence 99887766553
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.66 E-value=5e-08 Score=65.54 Aligned_cols=85 Identities=15% Similarity=0.081 Sum_probs=62.3
Q ss_pred hccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHH--HcCCcEEEEccCCCC
Q 030693 82 YYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR--KKNLQYYEISAKSNY 158 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~S~~~~~ 158 (173)
...+.|.+++|+++.+|. +...+.+++-..... ++|.++|+||+||.+.........+.. ..+.+++.+|++++.
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~ 84 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGM 84 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccch
Confidence 456889999999988764 444555565555554 899999999999987554333333333 335788999999999
Q ss_pred ChHHHHHHHH
Q 030693 159 NFEKPFLYLA 168 (173)
Q Consensus 159 ~i~~~~~~i~ 168 (173)
|++++.+.+.
T Consensus 85 g~~~L~~~l~ 94 (225)
T d1u0la2 85 GIEELKEYLK 94 (225)
T ss_dssp THHHHHHHHS
T ss_pred hHhhHHHHhc
Confidence 9999988764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.47 E-value=1.6e-07 Score=62.43 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=57.8
Q ss_pred EEEEEEEeCCCcccccCc----chhhc--------cCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCC
Q 030693 61 KIRFYCWDTAGQEKFGGL----RDGYY--------IHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~----~~~~~--------~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (173)
.+.+.++||+|...+... ...+. ...+-.++|.|++... ....+...+..+ +.. -+++||.
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----~~~-~lI~TKl 161 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-----GLT-GVIVTKL 161 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-----CCS-EEEEECT
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-----CCc-eEEEecc
Confidence 357899999995433321 11111 1347788999998553 333333333332 222 4568999
Q ss_pred CCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHH----HHHHHHhh
Q 030693 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF----LYLARKLA 172 (173)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~----~~i~~~i~ 172 (173)
|...+-.. ...++...+.++..++ +|++++++. +++++.++
T Consensus 162 Det~~~G~--~l~~~~~~~~Pi~~i~--~Gq~p~Dl~~~~~~~l~~~ll 206 (207)
T d1okkd2 162 DGTAKGGV--LIPIVRTLKVPIKFVG--VGEGPDDLQPFDPEAFVEALL 206 (207)
T ss_dssp TSSCCCTT--HHHHHHHHCCCEEEEE--CSSSTTCEEECCHHHHHHHHT
T ss_pred CCCCCccH--HHHHHHHHCCCEEEEe--CCCChHhCccCCHHHHHHHHh
Confidence 98665432 3566777888877766 355554332 44444444
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=1e-07 Score=64.05 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCcccc------cccceeEEEEEEEEEecCcEEEEEEEeCCCccccc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 76 (173)
-..+++|.+|+|||||+|+|........ ......+|....-+.++.. -.++||||...+.
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~ 161 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE 161 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence 3578999999999999999765432111 1111123333333344333 3678999976543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.38 E-value=1.1e-07 Score=64.06 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=61.5
Q ss_pred hccCCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHH----HHHHHHcCCcEEEEccCC
Q 030693 82 YYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHRKKNLQYYEISAKS 156 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~S~~~ 156 (173)
...+.|.+++|+++.+|+ +...+.+++-..... +++.+||+||+||.+.....+. .+.....+.+++.+|+++
T Consensus 7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~--~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~ 84 (231)
T d1t9ha2 7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD 84 (231)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc--CCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCC
Confidence 456889999999998764 445555555555443 8899999999999765432222 234455689999999999
Q ss_pred CCChHHHHHHH
Q 030693 157 NYNFEKPFLYL 167 (173)
Q Consensus 157 ~~~i~~~~~~i 167 (173)
+.|++++.+++
T Consensus 85 ~~gl~~L~~~l 95 (231)
T d1t9ha2 85 QDSLADIIPHF 95 (231)
T ss_dssp HTTCTTTGGGG
T ss_pred hhHHHHHHHhh
Confidence 99999887665
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.37 E-value=5.5e-07 Score=59.95 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=54.0
Q ss_pred EEEEEEEeCCCcccccCc------chhh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030693 61 KIRFYCWDTAGQEKFGGL------RDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~------~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
...+.++||+|...+... ...+ .-..+-.++|.+++.... .+....... ... + +--+++||.|...+
T Consensus 94 ~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~-~~~-~-~~~lI~TKlDet~~ 168 (211)
T d1j8yf2 94 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFN-QAS-K-IGTIIITKMDGTAK 168 (211)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHH-HHC-T-TEEEEEECTTSCSC
T ss_pred CCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhh-ccc-C-cceEEEecccCCCc
Confidence 357899999996433321 1111 123567889999876532 222222222 211 2 22466899998665
Q ss_pred cccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
.. ...+.+...++++..++ +|+++++
T Consensus 169 ~G--~~l~~~~~~~lPi~~it--~Gq~v~D 194 (211)
T d1j8yf2 169 GG--GALSAVAATGATIKFIG--TGEKIDE 194 (211)
T ss_dssp HH--HHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred cc--HHHHHHHHHCcCEEEEe--CCCCccc
Confidence 32 34577788888888776 4766654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.34 E-value=7.3e-06 Score=52.59 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
+||+++|++|+|||||++.+++
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 5899999999999999999664
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=1e-06 Score=58.61 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=51.9
Q ss_pred EEEEEEeCCCcccccC----cchh---hcc-----CCCEEEEEEECCChh-hhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 62 IRFYCWDTAGQEKFGG----LRDG---YYI-----HGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 62 ~~~~~~D~~G~~~~~~----~~~~---~~~-----~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
+.+.++||+|-..... .... ... ..+-.++|.|++... ....+...+..+ + +--+++||.|
T Consensus 92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----~-~~~lIlTKlD 165 (211)
T d2qy9a2 92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-----G-LTGITLTKLD 165 (211)
T ss_dssp CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-----C-CCEEEEECCT
T ss_pred CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-----C-CceEEEeecC
Confidence 5689999999432211 1111 111 246788899987543 222222222221 2 2246689999
Q ss_pred CccccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
...+-. .........+.++..++ .|+++++
T Consensus 166 e~~~~G--~~l~~~~~~~~Pi~~i~--~Gq~v~D 195 (211)
T d2qy9a2 166 GTAKGG--VIFSVADQFGIPIRYIG--VGERIED 195 (211)
T ss_dssp TCTTTT--HHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred CCCCcc--HHHHHHHHHCCCEEEEe--CCCCccc
Confidence 866532 24567778888887776 6666643
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.22 E-value=1.8e-07 Score=62.96 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
-..+++|++|+|||||+|+|...
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred ceEEEECCCCccHHHHHHhhccH
Confidence 35689999999999999997754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.19 E-value=2.8e-06 Score=56.53 Aligned_cols=93 Identities=14% Similarity=-0.008 Sum_probs=52.4
Q ss_pred EEEEEEEeCCCcccccCc----chhhcc--------CCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 61 KIRFYCWDTAGQEKFGGL----RDGYYI--------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~----~~~~~~--------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
.+.+.++||+|...+... ...+.. ..+-.++|.|++... +.+.......... + +--++++|.|
T Consensus 93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~--~-~~~lI~TKlD 167 (213)
T d1vmaa2 93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV--N-VTGIILTKLD 167 (213)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS--C-CCEEEEECGG
T ss_pred CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc--C-CceEEEeccc
Confidence 356899999994332211 111111 146788999987543 2222222222221 2 2346689999
Q ss_pred CccccccHHHHHHHHHcCCcEEEEccCCCCChHH
Q 030693 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (173)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 162 (173)
...+-. .....+...+.++..++ +|+++++
T Consensus 168 e~~~~G--~~l~~~~~~~~Pi~~i~--~Gq~v~D 197 (213)
T d1vmaa2 168 GTAKGG--ITLAIARELGIPIKFIG--VGEKAED 197 (213)
T ss_dssp GCSCTT--HHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred CCCccc--HHHHHHHHHCCCEEEEe--CCCCccc
Confidence 765432 34577778888887776 4666643
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=1.6e-05 Score=53.28 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
.+|.|.-|||||||+++++..
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 577899999999999998864
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.98 E-value=2.6e-06 Score=54.51 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
++.++|++.|++||||||+.+.|..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 5679999999999999999998654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.97 E-value=4.7e-06 Score=55.22 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=49.0
Q ss_pred EEEEEEEeCCCcccccCc----chhh--ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccc
Q 030693 61 KIRFYCWDTAGQEKFGGL----RDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (173)
...+.++||+|....... ...+ ..+.+-.++|.|++....... ....+.+.. +. --++++|.|...+.
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~---~~~~f~~~~-~~-~~~I~TKlDe~~~~- 165 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS---VARAFDEKV-GV-TGLVLTKLDGDARG- 165 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH---HHHHHHHHT-CC-CEEEEECGGGCSSC-
T ss_pred cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH---HHHHHHhhC-CC-CeeEEeecCccccc-
Confidence 357899999995433221 1111 235678899999876642211 222222211 21 23668999976543
Q ss_pred cHHHHHHHHHcCCcEEEEc
Q 030693 135 KAKQVTFHRKKNLQYYEIS 153 (173)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (173)
=...+++...+.++..++
T Consensus 166 -G~~l~~~~~~~~Pi~~i~ 183 (207)
T d1ls1a2 166 -GAALSARHVTGKPIYFAG 183 (207)
T ss_dssp -HHHHHHHHHHCCCEEEEC
T ss_pred -hHHHHHHHHHCCCEEEEe
Confidence 234567777888876664
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.92 E-value=2.4e-06 Score=55.10 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-+|+|.|++|+|||||+++|..
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=2.9e-06 Score=54.98 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|+++||+|+||+||+++|+..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999997643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.87 E-value=5.2e-06 Score=51.96 Aligned_cols=20 Identities=25% Similarity=0.682 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|++.|++||||||+++++..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998754
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.86 E-value=5e-06 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+.+||+++|+|||||||+...|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998653
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.84 E-value=4.8e-06 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
..+|+++|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.78 E-value=6.9e-06 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
+||+|+|+|||||||+++.|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988643
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=6.6e-06 Score=52.29 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++|+|.+|||||||+++++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999774
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.74 E-value=1e-05 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+.++|+++|+|||||||+...|..
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998664
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.72 E-value=1e-05 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
++|+++|+|||||||+++.|..
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.71 E-value=9.6e-06 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
+++|+++|++||||||+++.|.
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998854
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.70 E-value=1.1e-05 Score=52.01 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
+||+++|+|||||||+.+.|..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.68 E-value=5.2e-06 Score=54.09 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|+|+|++||||+||+++|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999997543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.67 E-value=1.7e-05 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...|+|+|+|||||||++++|..
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.66 E-value=1.4e-05 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+++|+|||||||+.+.|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=1.3e-05 Score=51.60 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
+||+++|+|||||||..+.|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.63 E-value=1.5e-05 Score=50.60 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|++.|++||||||++++|..
T Consensus 5 I~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=4.5e-06 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|+++|++|||||||++.|...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999996543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.58 E-value=3e-05 Score=49.43 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
.+-+-|.++|.+||||||+.+.|.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999998854
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.57 E-value=2.1e-05 Score=49.94 Aligned_cols=20 Identities=30% Similarity=0.518 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
+.|+|.+|||||||+++++.
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=2e-05 Score=49.46 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998653
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.53 E-value=4.7e-05 Score=48.79 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=20.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
+...=|+++|.+||||||++.+++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344678899999999999999865
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=7.2e-05 Score=51.61 Aligned_cols=62 Identities=19% Similarity=0.113 Sum_probs=39.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhhCCccc-----ccccceeEEEEEEEEEecCcEEEEEEEeCCCccc
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-----KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 74 (173)
+-.=|.|+|+.++|||+|+|.+++....- ....|.|+-.....+ ..+....+.++||.|...
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD 97 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence 34568899999999999999987654311 112344543322222 234556789999999643
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=3.1e-05 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
+.|+|+|+|||||||....+..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998653
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=2.7e-05 Score=49.88 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+|.|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998663
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=2.9e-05 Score=49.35 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
+|+++|++||||||+.+.+.
T Consensus 3 ~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998854
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=1.2e-05 Score=53.17 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
|+++||+|||||||+++|+..
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678899999999999997654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.45 E-value=3.5e-05 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.=|+++|.|||||||+.++|..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999653
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.45 E-value=3.5e-05 Score=48.78 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
+|+++|++||||||+.+.|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998864
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.41 E-value=1.2e-05 Score=52.46 Aligned_cols=20 Identities=35% Similarity=0.735 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|+|+|++|||||||+++|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=4.8e-05 Score=51.42 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+++|+|++|+|||||++.+.+
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~g 51 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQR 51 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999998554
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.39 E-value=5.6e-05 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
++.++|+|-|++||||||....|..
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999998653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=5e-05 Score=48.13 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-=++++|++||||||+.+.|..
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3466789999999999999654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.37 E-value=5.3e-05 Score=48.56 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
|+|.|++||||||+++.|.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999999864
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.36 E-value=5.9e-05 Score=47.93 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|++.|++||||||+.+.+..
T Consensus 7 I~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77889999999999998653
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.34 E-value=9.4e-05 Score=47.82 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.++-|+|.|++|||||||+++|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457799999999999999998753
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.31 E-value=6.8e-05 Score=47.59 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
|++.|++||||||+.+.|..
T Consensus 6 I~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56679999999999998653
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=0.0001 Score=48.00 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
--|+++|+|||||||++..|..
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588899999999999998654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=5.4e-05 Score=49.00 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
.+...|.++|.+||||||+.+.|.
T Consensus 17 ~~g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 17 FRGCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345678899999999999999864
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.29 E-value=0.00038 Score=46.77 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
++++.|++|+||||++..+...
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999886643
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.29 E-value=7.7e-05 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 30 ~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998553
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.28 E-value=7.5e-05 Score=50.83 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
+++++|++|+|||||++.+.+
T Consensus 43 ~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 699999999999999998543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.27 E-value=8.3e-05 Score=47.35 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
.|+++|++||||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37889999999999999864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.26 E-value=7.8e-05 Score=48.53 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|+++|+|||||||++.+|..
T Consensus 10 iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=9.1e-05 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 42 ~vaivG~sGsGKSTLl~li~g 62 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQN 62 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999998543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.19 E-value=0.00011 Score=50.77 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|+|+.|+|||||++.+.+
T Consensus 64 ~vaivG~nGsGKSTLl~~i~G 84 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILG 84 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 589999999999999998654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.00014 Score=47.98 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
++-|+|.|++|||||||.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5779999999999999999864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00012 Score=49.11 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 28 i~~liGpsGsGKSTLl~~i~G 48 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAG 48 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 478999999999999998554
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.17 E-value=0.00018 Score=48.90 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-|++.|+||+||||++..+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.16 E-value=0.00015 Score=47.54 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|+.|+|||||++.+.+
T Consensus 29 i~~l~G~NGsGKSTLl~~i~g 49 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTIST 49 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 378999999999999998543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.13 E-value=0.00013 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
-++++|++|+|||||++. +.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~-i~gl 54 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNI-IGCL 54 (230)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTS
T ss_pred EEEEECCCCCCcchhhHh-ccCC
Confidence 479999999999999997 4443
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.12 E-value=9.1e-05 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.+|+|.|++||||||+++.++..
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEeeccccchHHHHHHhhh
Confidence 46999999999999999997643
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.11 E-value=0.00014 Score=46.67 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.7
Q ss_pred EEE-EEcCCCCCHHHHHHHHh
Q 030693 15 KLV-IVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~-v~G~~~~GKStli~~l~ 34 (173)
||+ +.|.+||||||+++.|.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 554 57999999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.10 E-value=0.00015 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|+.|+|||||++.+.+
T Consensus 26 ~~~liGpnGaGKSTll~~i~G 46 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 357899999999999998554
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00019 Score=46.74 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.-+++++|++|+|||++++.+...
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHHH
Confidence 347899999999999999886643
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.07 E-value=0.00017 Score=48.53 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 34 ~~~liGpsGaGKSTLl~~i~G 54 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAG 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 479999999999999998543
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.07 E-value=9.7e-05 Score=50.30 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
+++|+|++|+|||||++.+.
T Consensus 46 ~vaivG~sGsGKSTLl~ll~ 65 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIP 65 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTT
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999998744
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.02 E-value=0.00019 Score=48.27 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 31 ~~~liG~sGaGKSTll~~i~g 51 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAG 51 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 478999999999999998553
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00018 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|||||||++.+.+
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~G 53 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNL 53 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378999999999999998543
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.01 E-value=0.00013 Score=48.81 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|++|+|||||++.+.+
T Consensus 28 ~~~liGpsGaGKSTll~~l~G 48 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAG 48 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999998554
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.00019 Score=48.09 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.+++.|+||+||||+++.+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHh
Confidence 589999999999999998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.98 E-value=0.00021 Score=48.17 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++++|+.|+|||||++.+.+
T Consensus 34 i~~liGpnGaGKSTl~~~i~G 54 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 378999999999999998554
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00025 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.=+++++|++|+|||++++.+...
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999999986643
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.96 E-value=0.00023 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|+||+||||+++.+..
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.95 E-value=0.0004 Score=44.81 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+++-|+|.|.+||||||+++.|..
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.94 E-value=0.00032 Score=45.44 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=21.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
..+++-|+|-|..||||||+++.|.
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~ 30 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFE 30 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHH
Confidence 3456889999999999999999854
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00016 Score=48.47 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|+.|+|||||++.+.+
T Consensus 28 ~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 28 LHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp EECBCCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 78999999999999998654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.91 E-value=0.00045 Score=46.66 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+...|++.|++|+|||++++.+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 345799999999999999999653
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.89 E-value=0.00037 Score=46.89 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++++|+.|+|||||++.+.+-
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~ 51 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTL 51 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999985543
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.88 E-value=0.0003 Score=47.93 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
.++++|+.|+|||||++.+.
T Consensus 30 i~~iiG~sGsGKSTLl~~i~ 49 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCIN 49 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47999999999999999854
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.83 E-value=0.00038 Score=46.31 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.+++.|++|+||||+++.+..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.82 E-value=0.00034 Score=47.55 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
++++|+.|+|||||++.+.+
T Consensus 33 ~~liG~nGaGKSTLl~~i~G 52 (254)
T d1g6ha_ 33 TLIIGPNGSGKSTLINVITG 52 (254)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHC
Confidence 78999999999999998554
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.77 E-value=0.00018 Score=48.41 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||||++.+.+
T Consensus 33 ~~~iiG~sGsGKSTll~~i~g 53 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAG 53 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 489999999999999998543
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.77 E-value=0.00059 Score=44.89 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.+..-|.+.|.+|||||||.+.|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.74 E-value=0.00062 Score=45.97 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999986643
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.00044 Score=45.47 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
=|+|.|+|||||+|+...|..
T Consensus 5 iI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366779999999999988553
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.74 E-value=0.00043 Score=48.40 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.++++||||+|||.|++++..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhh
Confidence 5689999999999999999664
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.00051 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|++|+||||++..+..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~ 74 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQ 74 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998664
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00082 Score=46.83 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
...++=|+|.|.+||||||+.+.|.
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 4556899999999999999988754
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.60 E-value=0.00057 Score=46.22 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++|.|++|+|||||+++++.
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 578899999999999998653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.58 E-value=0.00068 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|++.|++|+|||++++.+..
T Consensus 43 ~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHH
Confidence 3589999999999999999663
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.52 E-value=0.00085 Score=43.68 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
-|+|-|..||||||+++.|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999854
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.51 E-value=0.00091 Score=41.87 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~~ 36 (173)
..-|++-|+=|+|||||++.++..
T Consensus 33 g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEecCCCccHHHHHHHHHhh
Confidence 355888999999999999987753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.00088 Score=44.30 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
++++.|++|+||||+++.+..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHH
Confidence 489999999999999987653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.43 E-value=0.00075 Score=45.81 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
+++.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999986543
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00094 Score=45.33 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|+||+|||++++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHH
Confidence 4589999999999999999653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.00093 Score=44.36 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.+++.|++|+||||+++.+..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHH
Confidence 389999999999999998764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.00092 Score=44.19 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
++++.|++|+||||++..+..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 489999999999999998764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.39 E-value=0.0013 Score=44.64 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.+++.|+||+|||++++.+..
T Consensus 39 ~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEecCCCCCchHHHHHHHH
Confidence 4699999999999999998654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.37 E-value=0.0016 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+=+|+++||+|+|||-|+++|..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.002 Score=41.79 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~ 38 (173)
=+.+.|++|+|||+|+..++.+..
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 367889999999999998776543
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.002 Score=44.34 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=20.3
Q ss_pred CCCeeEEEEEcCCCCCHHHHHHHH
Q 030693 10 DYPSFKLVIVGDGGTGKTTFVKRH 33 (173)
Q Consensus 10 ~~~~~~i~v~G~~~~GKStli~~l 33 (173)
+..++=|.|.|.+|||||||...+
T Consensus 24 ~~~P~iIGi~G~qGSGKSTl~~~l 47 (286)
T d1odfa_ 24 NKCPLFIFFSGPQGSGKSFTSIQI 47 (286)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEeECCCCCCHHHHHHHH
Confidence 445688999999999999998765
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.28 E-value=0.00085 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
=+++++|+||+|||++++.|..
T Consensus 44 ~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHHH
Confidence 3579999999999999976543
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.0015 Score=42.74 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
|++-|..||||||+++.|.
T Consensus 5 IviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6778999999999999854
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.18 E-value=0.0012 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
-.|++.|++|+|||+|++.+..
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~ 63 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIAN 63 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcchhHHHHHHH
Confidence 4699999999999999999653
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.17 E-value=0.002 Score=41.01 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEF 38 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~ 38 (173)
.-|++.|++|+||||+.-.+.....
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~g~ 39 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQRGH 39 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 4589999999999999998776554
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.0024 Score=41.76 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
+-|+|.|..||||||+.+.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 45889999999999999986543
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.11 E-value=0.0027 Score=41.38 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
+-|+|.|..||||||+++.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999987653
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.05 E-value=0.0024 Score=40.72 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEF 38 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~ 38 (173)
.-|++.|++|+||||+.-.|.....
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~~G~ 40 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLINKNH 40 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 4589999999999999998775543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.002 Score=42.26 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
|++-|..||||||+++.|.
T Consensus 6 I~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6777999999999888754
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0048 Score=40.71 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
-++|.|++|+|||+|+..++.+.
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 36788999999999999977554
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.96 E-value=0.001 Score=46.77 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
++++.|++|+|||+|++++.
T Consensus 30 ~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 68999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.93 E-value=0.0043 Score=41.26 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCc
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~~ 38 (173)
-++|.|++|+|||+|.-+++.+..
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~~~~ 61 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAVMVQ 61 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhh
Confidence 368889999999999998775443
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0017 Score=43.10 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.|+|-|+.||||||+++.|..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588899999999999998543
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.84 E-value=0.0036 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.+++.||||+|||+|+..+..
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998653
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.80 E-value=0.0028 Score=43.32 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-|.|.|++|+|||||+..+..
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.78 E-value=0.0037 Score=39.53 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCc
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTGEF 38 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~~~ 38 (173)
.-|++.|++|+||||+.-.+.....
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~g~ 40 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKRGH 40 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 4689999999999999988776654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.77 E-value=0.0035 Score=44.65 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHh
Q 030693 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 12 ~~~~i~v~G~~~~GKStli~~l~ 34 (173)
+.-+++++||+|+|||-|.++|.
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA 89 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLA 89 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHH
Confidence 45679999999999999999865
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.00048 Score=44.42 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.8
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 030693 17 VIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 17 ~v~G~~~~GKStli~~l~ 34 (173)
+|+|+.|+|||||+.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567999999999999864
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.64 E-value=0.0015 Score=44.91 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
=|+|.|.+||||||+.++|.
T Consensus 6 IIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp EEEEESCC---CCTHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 49999999999999998754
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0056 Score=42.67 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-.++++|++|+|||.|+..+..
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCcchhHHHHHHHHh
Confidence 34689999999999999998653
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.53 E-value=0.0041 Score=41.23 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++|.|+||+|||+|+.+++.+
T Consensus 28 l~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 28 IILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4788899999999999987755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.52 E-value=0.0025 Score=43.92 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=15.4
Q ss_pred EEEcCCCCCHHHHHHHH
Q 030693 17 VIVGDGGTGKTTFVKRH 33 (173)
Q Consensus 17 ~v~G~~~~GKStli~~l 33 (173)
+++|+.|+|||++++++
T Consensus 28 vlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEECCTTTCSTHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 67799999999999886
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0045 Score=41.05 Aligned_cols=21 Identities=43% Similarity=0.551 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|+|=|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478889999999999998653
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.39 E-value=0.0036 Score=43.96 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+.-++|.|=|.-|+||||+++.|..
T Consensus 3 m~~lrI~IEG~iGsGKSTl~~~L~~ 27 (331)
T d1osna_ 3 MGVLRIYLDGAYGIGKTTAAEEFLH 27 (331)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.38 E-value=0.0046 Score=44.58 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
=|++.|++||||||.+..++..
T Consensus 160 liLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 160 IILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHhhh
Confidence 3899999999999999997753
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.011 Score=39.23 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
-++|.|++|+|||+|.-+++.+
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788899999999999998754
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.30 E-value=0.0053 Score=40.56 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~~ 37 (173)
-++|.|++|+|||+|+..++.+.
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 36788999999999999977544
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.0058 Score=40.03 Aligned_cols=19 Identities=37% Similarity=0.345 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
|++=|..||||||+++.|.
T Consensus 6 I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7888999999999998854
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.23 E-value=0.0056 Score=39.68 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=20.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
+++-.+++.|++++|||.|+.++..
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3446789999999999999998653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.0051 Score=44.09 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=16.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHH
Q 030693 13 SFKLVIVGDGGTGKTTFVKRH 33 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l 33 (173)
.++ +|+|+.|+|||+++.++
T Consensus 26 ~l~-~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 26 NFT-SIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp SEE-EEECSTTSSHHHHHHHH
T ss_pred CEE-EEECCCCCCHHHHHHHH
Confidence 354 47799999999999986
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.19 E-value=0.0066 Score=42.36 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
+++.|+||+|||.|++.+..
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 45579999999999999654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0087 Score=38.97 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-+++.|++|+||||++..+..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 389999999999999997654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.89 E-value=0.0084 Score=39.75 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-|++.|..||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998643
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.85 E-value=0.0087 Score=40.51 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
+++.|++|+|||+|+..+..+
T Consensus 38 ~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHh
Confidence 678899999999998886643
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.84 E-value=0.0087 Score=39.17 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
-++|.|++|+|||+|+..++.
T Consensus 28 ~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 28 STLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 467889999999999877553
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.0091 Score=39.69 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030693 15 KLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~ 34 (173)
.+++.|++|+|||+++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 37889999999999998754
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=94.79 E-value=0.011 Score=41.53 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
-++|.|=|..|+||||+++.|.
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~ 27 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMA 27 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCccCCHHHHHHHHH
Confidence 4789999999999999999854
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.64 E-value=0.011 Score=38.70 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
+.+.|++|+|||.|+.++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998543
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.58 E-value=0.0099 Score=41.60 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~ 34 (173)
-++|.|=|.-|+||||+++.|.
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La 25 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLV 25 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHT
T ss_pred ceEEEEECCcCCCHHHHHHHHH
Confidence 4679999999999999999854
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.48 E-value=0.0089 Score=41.23 Aligned_cols=18 Identities=39% Similarity=0.695 Sum_probs=14.2
Q ss_pred EEEEEcCCCCCHHHH-HHH
Q 030693 15 KLVIVGDGGTGKTTF-VKR 32 (173)
Q Consensus 15 ~i~v~G~~~~GKStl-i~~ 32 (173)
.++|.|.+||||||. +++
T Consensus 26 ~~lV~g~aGSGKTt~l~~r 44 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTHR 44 (318)
T ss_dssp CEEEEECTTSCHHHHHHHH
T ss_pred CEEEEecCCccHHHHHHHH
Confidence 378999999999964 444
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.011 Score=42.69 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.-+++|+|.+|+|||+++..++.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHHH
Confidence 35699999999999999876553
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.43 E-value=0.0075 Score=41.23 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=14.1
Q ss_pred EEEEEcCCCCCHHHH-HHH
Q 030693 15 KLVIVGDGGTGKTTF-VKR 32 (173)
Q Consensus 15 ~i~v~G~~~~GKStl-i~~ 32 (173)
.++|+|.+|+||||. +++
T Consensus 16 ~~lI~g~aGTGKTt~l~~r 34 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNK 34 (306)
T ss_dssp EEEECCCTTSCHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHH
Confidence 368889999999964 444
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.33 E-value=0.015 Score=34.38 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=21.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~ 34 (173)
.+-+.|.+.|..|+|||+|.+.|.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHH
Confidence 456899999999999999999864
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=94.31 E-value=0.017 Score=36.77 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
++|+|...||||.+.+++...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 689999999999999997644
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.013 Score=39.40 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
.+|.|++|+|||+|+-.+..
T Consensus 32 ~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999987653
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.12 E-value=0.021 Score=38.72 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=20.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHhh
Q 030693 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 11 ~~~~~i~v~G~~~~GKStli~~l~~ 35 (173)
.++--+.+.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 3456788899999999999998553
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.07 E-value=0.083 Score=34.31 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=49.0
Q ss_pred EEEEEEEeCCCcccccCcchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEE-EEEeCCCCccccccH
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA 136 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~ 136 (173)
.+.+.++|+++... ......+..+|.++++...+ ..++..+...+..+.+. +.|++ +|+|+.+..+.....
T Consensus 111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~--~~~~~giv~N~~~~~~~~~~~ 182 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA--GLAILGFVLNRYGRSDRDIPP 182 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT--TCEEEEEEEEEETSCTTCCCH
T ss_pred cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh--hhhhhhhhhcccccccchhhh
Confidence 46789999987543 33444567899999998864 55666666666666553 77765 788999876544433
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.02 E-value=0.022 Score=39.55 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
.++++|++|+|||.+++.+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 578889999999999987653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.34 E-value=0.029 Score=38.38 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
|++|+|++|+|||+|+..+..+
T Consensus 45 r~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 45 RGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeEeCCCCCCHHHHHHHHHHH
Confidence 7999999999999999886643
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.027 Score=39.86 Aligned_cols=18 Identities=56% Similarity=0.643 Sum_probs=14.9
Q ss_pred EEEEEcCCCCCHHHHHHH
Q 030693 15 KLVIVGDGGTGKTTFVKR 32 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~ 32 (173)
-.+|.|+||+|||+++..
T Consensus 165 ~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp EEEEECCTTSTHHHHHHH
T ss_pred eEEEEcCCCCCceehHHH
Confidence 467889999999988754
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=92.41 E-value=0.22 Score=31.18 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=28.8
Q ss_pred hhhccCCCEEEEEEECCChhhh----------hcHHHHHHHHhhhcC-CCCEEEEEeCCC
Q 030693 80 DGYYIHGQCAIIMFDVTARLTY----------KNVPTWHRDLCRVCE-NIPIVLCGNKVD 128 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~----------~~~~~~~~~~~~~~~-~~p~ivv~nK~D 128 (173)
...+.++|+++++-.....+.. .-++...+.+.++++ +..+++++|=+|
T Consensus 95 ~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd 154 (175)
T d7mdha1 95 YEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN 154 (175)
T ss_dssp HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred hhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence 3457789999998766532211 112334455566654 566777777666
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=91.99 E-value=0.051 Score=36.22 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030693 14 FKLVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~ 34 (173)
..|+|.|++|+||+.+++.+-
T Consensus 24 ~pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 24 CPVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp SCEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCcCHHHHHHHHH
Confidence 458999999999999998853
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.50 E-value=0.065 Score=36.09 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 030693 16 LVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~~ 36 (173)
+.+.|++++|||+|+-.+...
T Consensus 57 tei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 57 VEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHHHHH
Confidence 678899999999998876543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.35 E-value=0.058 Score=36.58 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
|+.++|.+|+|||+|+..+..+
T Consensus 70 r~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 70 KIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 7999999999999998887644
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=90.81 E-value=0.088 Score=35.16 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=48.7
Q ss_pred EEEEEEEeCCCcccccC-cchhhccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCE-EEEEeCCCCccccccH
Q 030693 61 KIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVKNRQVKA 136 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~-ivv~nK~Dl~~~~~~~ 136 (173)
.+.+.++|+|+.-.... ........+|.++++.+. +..++..+......+.... .+.++ -++.|+.+..... +
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~--~ 191 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY--E 191 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH--H
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCcc--c
Confidence 36788999987543222 222233457888877775 5566666555555554432 23332 3678998765532 2
Q ss_pred HHHHHHHHcCCcEE
Q 030693 137 KQVTFHRKKNLQYY 150 (173)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (173)
....+++..+.+++
T Consensus 192 ~~~~~~~~~~~~~~ 205 (269)
T d1cp2a_ 192 LLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHTCCEE
T ss_pred hhhhhHhhcCCeEE
Confidence 23345555665543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.73 E-value=0.089 Score=34.72 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
++|.|+..+||||+++.+.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHH
Confidence 6888999999999999854
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.49 E-value=0.095 Score=34.34 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030693 16 LVIVGDGGTGKTTFVKRHL 34 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~ 34 (173)
++|.|+..+||||+++++.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 6899999999999999754
|
| >d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Formyltetrahydrofolate synthetase species: Moorella thermoacetica [TaxId: 1525]
Probab=90.10 E-value=0.23 Score=36.53 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=44.5
Q ss_pred hcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEEEEccCCCCChHHHHHHHHHHh
Q 030693 102 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (173)
Q Consensus 102 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~i 171 (173)
.++.+-++.++++ ++|++|++|+-....+.......+++.+.++.....=++-|+|-.++.+.+.+.+
T Consensus 355 ~NL~rHIeNi~~f--GlpvVVAIN~F~tDTd~Ei~~i~~~~~~~g~~~a~~wa~GG~Ga~dLA~~Vv~a~ 422 (549)
T d1eg7a_ 355 ANLEKHIENIGKF--GVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTL 422 (549)
T ss_dssp HHHHHHHHHHHTT--TCCEEEEEECCTTCCHHHHHHHHHHTTTSEEEEECCTTTGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc--CCCeEEEeccCCccchhHHHHHHHHHhhcCcceeeecccCccchHHHHHHHHHHH
Confidence 3444555555554 9999999999987655555555667776665543333556667777777766543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.61 E-value=0.14 Score=30.26 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=15.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 030693 15 KLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~ 35 (173)
..++.++.|+|||+++-.++.
T Consensus 10 ~~ll~apTGsGKT~~~~~~~~ 30 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAYA 30 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 346789999999988765443
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.32 E-value=0.36 Score=28.69 Aligned_cols=45 Identities=2% Similarity=0.055 Sum_probs=29.6
Q ss_pred hccCCCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccc
Q 030693 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (173)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (173)
.+.++|++++ +...-|+++.++...+... +++|++.|-..|-..+
T Consensus 70 ~~~~~d~I~I----DEaQFf~dl~~~~~~~~~~--~~~Viv~GLd~Df~~~ 114 (133)
T d1xbta1 70 EALGVAVIGI----DEGQFFPDIVEFCEAMANA--GKTVIVAALDGTFQRK 114 (133)
T ss_dssp HHHTCSEEEE----SSGGGCTTHHHHHHHHHHT--TCEEEEECCSBCTTSS
T ss_pred hhcccceEEe----ehhHHHHHHHHHHHHHHhc--CCcEEEEEeccccccC
Confidence 3456675333 5555566676666666554 8889998888886543
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=88.85 E-value=0.16 Score=32.44 Aligned_cols=63 Identities=10% Similarity=-0.037 Sum_probs=32.2
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCEEEEEeCCCCccccccHHHHHHHHHcCCcEE
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 150 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (173)
...+++|.+...... .........+... .....-+|.|+.|.......+....+.+..+++++
T Consensus 138 ~~~v~~V~~~~~~~~-~~~~~~~~~~~~~-~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~gi~vl 200 (224)
T d1byia_ 138 QLPVILVVGVKLGCI-NHAMLTAQVIQHA-GLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLL 200 (224)
T ss_dssp TCCEEEEEECSTTHH-HHHHHHHHHHHHT-TCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEE
T ss_pred cceeeEEEeeccchh-HHHHHHHHHHhcc-CCccEEEEEeCcCCCchHHHHHHHHHHHHhCCCEE
Confidence 345555566554432 2222233333332 23334678899886554333334456666777765
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=88.00 E-value=0.15 Score=34.46 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=46.7
Q ss_pred EEEEEEEeCCCcccccCcchhh-ccCCCEEEEEEECCChhhhhcHHHHHHHHhhhc--CCCCE-EEEEeCCCCccccccH
Q 030693 61 KIRFYCWDTAGQEKFGGLRDGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVKNRQVKA 136 (173)
Q Consensus 61 ~~~~~~~D~~G~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~-ivv~nK~Dl~~~~~~~ 136 (173)
.+.+.++|+|+.-......... ...++.++++.. .+..++..+...+..+.+.. ++.++ .++.|+.+..... +
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~--~ 194 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRED--E 194 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHH--H
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhH--H
Confidence 4678899998754322222222 234666666654 44555566655555554432 34444 3778987654321 1
Q ss_pred HHHHHHHHcCCcEEE
Q 030693 137 KQVTFHRKKNLQYYE 151 (173)
Q Consensus 137 ~~~~~~~~~~~~~~~ 151 (173)
...+++...+..++.
T Consensus 195 ~~~~~~~~~g~~vl~ 209 (289)
T d2afhe1 195 LIIALANKLGTQMIH 209 (289)
T ss_dssp HHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCeEEE
Confidence 233455556665543
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.63 E-value=0.13 Score=35.45 Aligned_cols=15 Identities=53% Similarity=0.722 Sum_probs=13.2
Q ss_pred EEEcCCCCCHHHHHH
Q 030693 17 VIVGDGGTGKTTFVK 31 (173)
Q Consensus 17 ~v~G~~~~GKStli~ 31 (173)
++.|.+|+|||||-.
T Consensus 18 lfFGLSGTGKTTLs~ 32 (313)
T d2olra1 18 VFFGLSGTGKTTLST 32 (313)
T ss_dssp EEECSTTSSHHHHHC
T ss_pred EEEccCCCCccccee
Confidence 688999999999763
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=87.59 E-value=0.19 Score=33.50 Aligned_cols=41 Identities=12% Similarity=-0.056 Sum_probs=23.7
Q ss_pred CCEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCE-EEEEeCCCC
Q 030693 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV 129 (173)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl 129 (173)
.+.+++|... +..+...+...+..+... +.|+ -+|.|+.-.
T Consensus 183 ~~~~vlV~~p-~~~~~~~~~r~~~~l~~~--~~~~~~iV~N~~~~ 224 (279)
T d1ihua2 183 RTKVLLVTLP-ETTPVLEAANLQADLERA--GIHPWGWIINNSLS 224 (279)
T ss_dssp TEEEEEEECS-SHHHHHHHHHHHHHHHHT--TCCCCEEEEEEEST
T ss_pred cccceEeccc-cHhHHHHHHHHHHHHHhc--CCCccEEEEcCCcc
Confidence 3556665443 455666666666666655 4443 456788643
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=87.54 E-value=0.19 Score=33.69 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=25.7
Q ss_pred CEEEEEEECCChhhhhcHHHHHHHHhhhcCCCCE-EEEEeCCC
Q 030693 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVD 128 (173)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~D 128 (173)
..+++|... +..+..+....+..+... ++|+ -+|+||.-
T Consensus 199 t~~~lVt~p-e~~~~~~~~r~~~~l~~~--gi~~~~vVvN~v~ 238 (296)
T d1ihua1 199 TRLVLVARL-QKSTLQEVARTHLELAAI--GLKNQYLVINGVL 238 (296)
T ss_dssp EEEEEEEES-CHHHHHHHHHHHHHHHHH--TCCCEEEEEEEEC
T ss_pred ceeeEecCc-chhHHHHHHHHHHHHHhc--CCCceEEEEcCCc
Confidence 345555544 456677777777777766 6665 57789974
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=87.17 E-value=0.13 Score=35.42 Aligned_cols=16 Identities=50% Similarity=0.652 Sum_probs=13.6
Q ss_pred EEEEcCCCCCHHHHHH
Q 030693 16 LVIVGDGGTGKTTFVK 31 (173)
Q Consensus 16 i~v~G~~~~GKStli~ 31 (173)
-++.|.+|+|||||..
T Consensus 17 alffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLST 32 (318)
T ss_dssp EEEEECTTSCHHHHTC
T ss_pred EEEEccCCCCcccccc
Confidence 4788999999999753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.96 E-value=0.22 Score=33.52 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
+.+.|++++|||+|+-.+..
T Consensus 60 tei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 60 TEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEecCCccchHHHHHHHHH
Confidence 56789999999999987654
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.82 E-value=0.17 Score=34.38 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
|+.++|.+|+|||+|+..+..+
T Consensus 70 r~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 70 RELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp BCEEEESTTSSHHHHHHHHHHH
T ss_pred EEEeecCCCCChHHHHHHHHHh
Confidence 7899999999999998776544
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.76 E-value=0.23 Score=33.41 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.5
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 030693 16 LVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 16 i~v~G~~~~GKStli~~l~~ 35 (173)
+.+.|++++|||+|+-.+..
T Consensus 63 ~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 63 IEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHHHH
Confidence 57789999999999876553
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.36 E-value=0.17 Score=34.99 Aligned_cols=16 Identities=50% Similarity=0.640 Sum_probs=13.8
Q ss_pred EEEEcCCCCCHHHHHH
Q 030693 16 LVIVGDGGTGKTTFVK 31 (173)
Q Consensus 16 i~v~G~~~~GKStli~ 31 (173)
-++.|.+|+|||||..
T Consensus 17 alfFGLSGTGKTTLs~ 32 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLSA 32 (323)
T ss_dssp EEEECCTTSSHHHHHC
T ss_pred EEEEccCCCCccccee
Confidence 3689999999999873
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.12 E-value=0.31 Score=31.03 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 030693 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (173)
Q Consensus 13 ~~~i~v~G~~~~GKStli~~l~~ 35 (173)
...+++.|++|+|||+++..+..
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987553
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.83 E-value=0.21 Score=33.73 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 030693 15 KLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~l~~~ 36 (173)
|+.++|.+|+|||+|+..+..+
T Consensus 69 r~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 69 RELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp BCBEEESSSSSHHHHHHHHHHT
T ss_pred eEeeccCCCCChHHHHHHHHhh
Confidence 6899999999999998765444
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.32 E-value=2.4 Score=25.22 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=29.3
Q ss_pred hhccCCCEEEEEEECCCh-----h-----hhhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 81 GYYIHGQCAIIMFDVTAR-----L-----TYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~-----~-----s~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
..++++|++++..-.... . ...-++...+.+.+++++.-++++.|=+|
T Consensus 64 ~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD 121 (144)
T d1mlda1 64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121 (144)
T ss_dssp HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHH
T ss_pred HHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence 456789998887554321 1 11223445666666777766777777766
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=85.32 E-value=1.5 Score=25.96 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=15.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
+||.++|..++|.+ +...+..+
T Consensus 1 mKI~IIGaG~VG~~-la~~l~~~ 22 (142)
T d1guza1 1 MKITVIGAGNVGAT-TAFRLAEK 22 (142)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHT
T ss_pred CEEEEECcCHHHHH-HHHHHHhC
Confidence 58999998778887 44454544
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.71 E-value=0.34 Score=30.45 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=13.2
Q ss_pred EEEEEcCCCCCHHHHH
Q 030693 15 KLVIVGDGGTGKTTFV 30 (173)
Q Consensus 15 ~i~v~G~~~~GKStli 30 (173)
++++++++|+|||.+.
T Consensus 25 n~lv~~pTGsGKT~i~ 40 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIA 40 (200)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred CeEEEeCCCCcHHHHH
Confidence 4788999999999643
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.30 E-value=0.58 Score=28.38 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=17.4
Q ss_pred CeeEEEEEcC-CCCCHHHHHHHHhhC
Q 030693 12 PSFKLVIVGD-GGTGKTTFVKRHLTG 36 (173)
Q Consensus 12 ~~~~i~v~G~-~~~GKStli~~l~~~ 36 (173)
+++||.|+|. .++|.+.... +..+
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~-l~~~ 26 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYS-IGNG 26 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHH-HHTT
T ss_pred CceEEEEECCCCHHHHHHHHH-HHHH
Confidence 4689999995 7899886554 3433
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=83.14 E-value=3.1 Score=24.68 Aligned_cols=45 Identities=7% Similarity=0.111 Sum_probs=26.1
Q ss_pred ccCCCEEEEEEECCChhhhhcHH-HHHHHHhhhcCCCCEEEEEeCCCCcccc
Q 030693 83 YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (173)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (173)
..+.|++.+ ++.+-|.+.. .....+.. .+++|++.|-..|-..+.
T Consensus 78 ~~~~dvI~I----DE~QFf~d~~~~~~~~l~~--~g~~Viv~GLd~Df~~~~ 123 (141)
T d1xx6a1 78 EEDTEVIAI----DEVQFFDDEIVEIVNKIAE--SGRRVICAGLDMDFRGKP 123 (141)
T ss_dssp CTTCSEEEE----CSGGGSCTHHHHHHHHHHH--TTCEEEEEECSBCTTSCB
T ss_pred cccccEEEE----eehhhccccHHHHHHhhee--CCcEEEEEEeccccccCc
Confidence 445665544 4444444433 33444433 388999999888875543
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=82.99 E-value=0.42 Score=28.59 Aligned_cols=36 Identities=8% Similarity=0.140 Sum_probs=20.8
Q ss_pred CChhhhhc-HHHHHHHHhhhcCCCCEEEEEeCCCCcccc
Q 030693 96 TARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (173)
Q Consensus 96 ~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (173)
++.+-|.+ +......+... +++|++.|-..|-..+.
T Consensus 86 DE~QFf~d~i~~~~~~~~~~--g~~Viv~GLd~Df~~~~ 122 (139)
T d2b8ta1 86 DEVQFFDDRICEVANILAEN--GFVVIISGLDKNFKGEP 122 (139)
T ss_dssp CSGGGSCTHHHHHHHHHHHT--TCEEEEECCSBCTTSSB
T ss_pred chhhhcchhHHHHHHHHHhc--CceEEEEEeccccccCc
Confidence 44444444 23334444443 78899988888865543
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=82.86 E-value=1.4 Score=26.54 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=28.9
Q ss_pred hhhccCCCEEEEEEECCChhh----------hhcHHHHHHHHhhhcC-CCCEEEEEeCCC
Q 030693 80 DGYYIHGQCAIIMFDVTARLT----------YKNVPTWHRDLCRVCE-NIPIVLCGNKVD 128 (173)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~-~~p~ivv~nK~D 128 (173)
...++++|++++.-.....+. ..-++.+...+.++++ +.-++++.|-+|
T Consensus 75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD 134 (154)
T d1y7ta1 75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN 134 (154)
T ss_dssp HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence 446788999999776553221 1223345555666654 444556667666
|
| >d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Psd-95 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.39 E-value=0.16 Score=32.55 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=15.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 030693 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli~~l~~~ 36 (173)
--|+|+|+ ||+|+.++|+..
T Consensus 10 Rpivi~Gp---~K~ti~~~L~~~ 29 (199)
T d1kjwa2 10 RPIIILGP---TKDRANDDLLSE 29 (199)
T ss_dssp CCEEEEST---THHHHHHHHHHH
T ss_pred CCEEEECc---CHHHHHHHHHHh
Confidence 45778886 699999997753
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=82.04 E-value=0.21 Score=29.16 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=13.0
Q ss_pred eEEEEEcCCCCCHHHHH
Q 030693 14 FKLVIVGDGGTGKTTFV 30 (173)
Q Consensus 14 ~~i~v~G~~~~GKStli 30 (173)
-++++.+++|+|||..+
T Consensus 8 ~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 8 MTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp CEEEECCCTTSSTTTTH
T ss_pred CcEEEEcCCCCChhHHH
Confidence 45677789999999433
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.93 E-value=2.5 Score=25.18 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=28.0
Q ss_pred hhccCCCEEEEEEECCChh---h-------hhcHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030693 81 GYYIHGQCAIIMFDVTARL---T-------YKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (173)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~---s-------~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (173)
..+.++|++++..-..... . ..-++...+.+.+++++.-++++-|=+|
T Consensus 70 ~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd 127 (148)
T d1ldna1 70 DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127 (148)
T ss_dssp GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH
T ss_pred HHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccH
Confidence 4567889998865554321 1 1222344556666667766666666665
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=81.46 E-value=5.3 Score=26.28 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCHHHHHHH
Q 030693 15 KLVIVGDGGTGKTTFVKR 32 (173)
Q Consensus 15 ~i~v~G~~~~GKStli~~ 32 (173)
+|++-|-.|+||||+.--
T Consensus 4 ~IaisgKGGVGKTT~a~N 21 (289)
T d2afhe1 4 QCAIYGKGGIGKSTTTQN 21 (289)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 577889999999997654
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.66 E-value=0.19 Score=31.87 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.9
Q ss_pred EEEEEcCCCCCHHHHH
Q 030693 15 KLVIVGDGGTGKTTFV 30 (173)
Q Consensus 15 ~i~v~G~~~~GKStli 30 (173)
++++.+++|+|||+..
T Consensus 42 ~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 42 NLLLAMPTAAGKTLLA 57 (202)
T ss_dssp CEEEECSSHHHHHHHH
T ss_pred CEEEEcCCCCchhHHH
Confidence 6899999999999754
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.47 E-value=0.54 Score=33.59 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=13.9
Q ss_pred EEEEEcCCCCCHHH-HHHHH
Q 030693 15 KLVIVGDGGTGKTT-FVKRH 33 (173)
Q Consensus 15 ~i~v~G~~~~GKSt-li~~l 33 (173)
.++|.+.+|+|||+ |+.++
T Consensus 18 ~~lv~A~AGsGKT~~l~~r~ 37 (485)
T d1w36b1 18 ERLIEASAGTGKTFTIAALY 37 (485)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEcCchHHHHHHHHHH
Confidence 46777889999995 44553
|