BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030694
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+
pdb|1YQD|B Chain B, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+
pdb|1YQX|A Chain A, Sinapyl Alcohol Dehydrogenase At 2.5 Angstrom Resolution
pdb|1YQX|B Chain B, Sinapyl Alcohol Dehydrogenase At 2.5 Angstrom Resolution
Length = 366
Score = 215 bits (547), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/155 (66%), Positives = 122/155 (78%)
Query: 1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
MVA+E +++R P+ PLD APLLCAGITVYSPL+++GLD+PG K
Sbjct: 146 MVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVK 205
Query: 61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
FAKA G KVTVISTSPSKK EA++ GADSFLVSRDQ++MQAA GT+DGIIDTVSAVHPL
Sbjct: 206 FAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL 265
Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEE 155
+PL GLLKS GKL+L+GAPEKPLELPAF L+ G +
Sbjct: 266 LPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRK 300
>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
Dehydrogenases, Atcad5
pdb|2CF6|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
Dehydrogenases Atcad5
Length = 357
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 92/154 (59%)
Query: 2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
V + FVV+IPEG ++ APLLCAG+TVYSPL +GL +PG+ K
Sbjct: 140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKI 199
Query: 62 AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM 121
AKAMG VTVIS+S K+ EA++ LGAD +++ DQ +M ++D +IDTV H L
Sbjct: 200 AKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALE 259
Query: 122 PLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEE 155
P + LLK GKL+L+G PL+ L+ G +
Sbjct: 260 PYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRK 293
>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol
Dehydrogenase-Like Protein Yahk
Length = 369
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Query: 1 MVADEHFVVRIPE-GAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
+V E +V+RI L A APLLCAGIT YSPLR + PG
Sbjct: 153 IVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAG-PGKKVGVVGIGGLGHMGI 211
Query: 60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
K A AMG V +TS +K+ EA + LGAD + SR+ DEM A + + D I++TV+A H
Sbjct: 212 KLAHAMGAHVVAFTTSEAKR-EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN 270
Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELP 146
L LLK G + L+GAP P + P
Sbjct: 271 LDDFTTLLKRDGTMTLVGAPATPHKSP 297
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 11/152 (7%)
Query: 1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
+V DE++V+ + + APL+ APLLCAGIT YSPL+F + K G K
Sbjct: 136 IVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTK-GTKVGVAGFGGLGSMAVK 194
Query: 61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
+A AMG +V+V + + KK +A+ +G F Q + + +D II T+ + L
Sbjct: 195 YAVAMGAEVSVFARNEHKKQDALS-MGVKHFYTDPKQCKEE-----LDFIISTIPTHYDL 248
Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT 152
+ LL G L L+G P P+E+ P+L+
Sbjct: 249 KDYLKLLTYNGDLALVGLP--PVEVA--PVLS 276
>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1Q1N|A Chain A, Apo And Holo Structures Of An Nadp(h)-dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|A Chain A, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|B Chain B, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
Length = 360
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 EHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKA 64
EHFVV IPE P APLLC G+TVYSPL G PG +KA
Sbjct: 143 EHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCG-PGKKVGIVGLGGIGSMGTLISKA 201
Query: 65 MGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSAV----HP 119
MG + VIS S K+ +A+ ++GAD ++ + ++ D + T D I+ S++
Sbjct: 202 MGAETYVISRSSRKREDAM-KMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFN 260
Query: 120 LMPLIGLLKSQGKLVLLGAPEK 141
+MP +K G++V + PE+
Sbjct: 261 IMP--KAMKVGGRIVSISIPEQ 280
>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx
pdb|3S1L|B Chain B, Crystal Structure Of Apo-Form Furx
pdb|3S1L|C Chain C, Crystal Structure Of Apo-Form Furx
pdb|3S1L|D Chain D, Crystal Structure Of Apo-Form Furx
pdb|3S2E|A Chain A, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|B Chain B, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|C Chain C, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|D Chain D, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|E Chain E, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|F Chain F, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|G Chain G, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|H Chain H, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2F|A Chain A, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|B Chain B, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|C Chain C, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|D Chain D, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|E Chain E, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|F Chain F, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|G Chain G, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|H Chain H, Crystal Structure Of Furx Nadh:furfural
pdb|3S2G|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2I|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
Length = 340
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
+VAD ++V +P+ AP+LCAG+TVY L+ +PG +
Sbjct: 126 VVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDT-RPGQWVVISGIGGLGHVAVQ 184
Query: 61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE---MQAAMGTMDGIIDTVSAV 117
+A+AMG++V + +K + A RLGA+ + +RD D +Q +G G++ T +
Sbjct: 185 YARAMGLRVAAVDIDDAKLNLA-RRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSP 243
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL 151
IG+++ G + L G P P F ++
Sbjct: 244 KAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVV 277
>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|B Chain B, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|C Chain C, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|D Chain D, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|E Chain E, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|F Chain F, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|G Chain G, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|H Chain H, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
Length = 342
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
++AD ++V +P+ AP+LCAG+TVY L+ +PG +
Sbjct: 130 VLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQTNA-RPGQWVAISGIGGLGHVAVQ 188
Query: 61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA---MGTMDGIIDTVSAV 117
+A+AMG+ V I +K E +LGA + +R +D ++A +G G++ T +
Sbjct: 189 YARAMGLHVAAIDIDDAKL-ELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSN 247
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAF 148
IG+ + G + L+G P P F
Sbjct: 248 SAFGQAIGMARRGGTIALVGLPPGDFPTPIF 278
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMG 66
+VV+IP+ + AP+ CAG+T Y L+ G KPG ++AKAMG
Sbjct: 130 YVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQYAKAMG 188
Query: 67 VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE---MQAAMGTMDGIIDTVSAVHPLMPL 123
+ V + +K E + LGAD + +D M+ +G + + T +
Sbjct: 189 LNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSA 247
Query: 124 IGLLKSQGKLVLLGAPEKPLELPAF 148
++ G VL+G P + + +P F
Sbjct: 248 YNSIRRGGACVLVGLPPEEMPIPIF 272
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMG 66
+VV+IP+ + AP+ CAG+T Y L+ G KPG ++AKAMG
Sbjct: 130 YVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGFGHVAVQYAKAMG 188
Query: 67 VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE---MQAAMGTMDGIIDTVSAVHPLMPL 123
+ V + +K E + LGAD + +D M+ +G + + T +
Sbjct: 189 LNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSA 247
Query: 124 IGLLKSQGKLVLLGAPEKPLELPAF 148
++ G VL+G P + + +P F
Sbjct: 248 YNSIRRGGACVLVGLPPEEMPIPIF 272
>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|B Chain B, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|C Chain C, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|D Chain D, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
Length = 347
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 3 ADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFA 62
AD IP+G L AP+LCAGITVY L+ L ++A
Sbjct: 131 ADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYA 190
Query: 63 KAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAMGTMD----GIIDTVSAV 117
KAMG +V I K+ E +G + F+ ++++D + A + D G+I+ +
Sbjct: 191 KAMGYRVLGIDGGEGKE-ELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSE 249
Query: 118 HPLMPLIGLLKSQGKLVLLGAP 139
+ +++ G VL+G P
Sbjct: 250 AAIEASTRYVRANGTTVLVGMP 271
>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|B Chain B, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|C Chain C, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|D Chain D, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
Length = 365
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
Query: 1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
+VAD +FV +P+ + AP+LCAG+TVY L+ KPG +
Sbjct: 149 VVADPNFVGHLPKNIDFNEIAPVLCAGVTVYKGLKVTDT-KPGDWVVISGIGGLGHMAVQ 207
Query: 61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTVS 115
+A+AMG+ V + +K + RLGA + ++ + A + G G++ T
Sbjct: 208 YARAMGLNVAAVDID-DRKLDLARRLGATVTVNAKTVADPAAYIRKETDGGAQGVLVTAV 266
Query: 116 AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL 151
+ +G++ G + L G P L F ++
Sbjct: 267 SPKAFEQALGMVARGGTVSLNGLPPGDFPLSIFNMV 302
>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
pdb|4EEX|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
Length = 348
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 1 MVADEHFVVRIPEGA-PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
+VAD + V++P+G P++A++ + CAG+T Y ++ G+ KPG
Sbjct: 125 VVAD--YAVKVPDGLDPIEASS-ITCAGVTTYKAIKVSGV-KPGDWQVIFGAGGLGNLAI 180
Query: 60 KFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD------EMQAAMGTMDGIID 112
++AK G KV + + K + A +++GAD + S D + ++ +G I+
Sbjct: 181 QYAKNVFGAKVIAVDINQDKLNLA-KKIGADVIINSGDVNPVDEIKKITGGLGVQSAIVC 239
Query: 113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL 145
V+ + + LK GK+V + P + L
Sbjct: 240 AVARI-AFEQAVASLKPMGKMVAVALPNTEMTL 271
>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
pdb|4EEZ|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
Length = 348
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 1 MVADEHFVVRIPEGA-PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
+VAD + V++P+G P++A++ + CAG+T Y ++ G+ KPG
Sbjct: 125 VVAD--YAVKVPDGLDPIEASS-ITCAGVTTYKAIKVSGV-KPGDWQVIFGAGGLGNLAI 180
Query: 60 KFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD------EMQAAMGTMDGIID 112
++AK G KV + + K + A +++GAD + S D + ++ +G I+
Sbjct: 181 QYAKNVFGAKVIAVDINQDKLNLA-KKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVC 239
Query: 113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL 145
V+ + + LK GK+V + P + L
Sbjct: 240 AVARI-AFEQAVASLKPMGKMVAVAVPNTEMTL 271
>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
pdb|1R37|B Chain B, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
Length = 347
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 21 APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS 80
APL C+GIT Y +R LD + AKA+ T+I +++
Sbjct: 150 APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEA 208
Query: 81 -EAVERLGADSFLVSRDQD---EMQAAMGT--MDGIIDTVSAVHPLMPLIGLLKSQGKLV 134
EA +R GAD + + QD E++ + +D +ID ++ L L QGK V
Sbjct: 209 VEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYV 268
Query: 135 LLGAPEKPLELPAFPLLTGEE 155
++G L A PL+T E
Sbjct: 269 MVGLFGADLHYHA-PLITLSE 288
>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
pdb|2EER|B Chain B, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
Length = 347
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 21 APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS 80
APL C+G+T Y +R LD + AKA+ T+I +++
Sbjct: 150 APLTCSGVTTYRAVRKASLDPSKTLVVIGAGGGLGTMAIQIAKAVS-GATIIGVDVREEA 208
Query: 81 -EAVERLGADSFLVSRDQD------EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKL 133
EA +R GAD + + QD + G D +ID ++ L +L QGK
Sbjct: 209 LEAAKRAGADYVINASSQDPVSEIRRITQGKGA-DAVIDLNNSEKTLSIYPYVLAKQGKY 267
Query: 134 VLLGAPEKPLELPAFPLLTGEE 155
V++G L+ A PL+T E
Sbjct: 268 VMVGLFGADLKYHA-PLITLNE 288
>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|B Chain B, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|C Chain C, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|D Chain D, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|E Chain E, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|H Chain H, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NVG|A Chain A, N249y Mutant Of The Alcohol Dehydrogenase From The
Archaeon Sulfolobus Solfataricus-tetragonal Crystal Form
Length = 347
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 21 APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS 80
APL C+GIT Y +R LD + AKA+ T+I +++
Sbjct: 150 APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEA 208
Query: 81 -EAVERLGADSFLVSRDQD---EMQAAMGT--MDGIIDTVSAVHPLMPLIGLLKSQGKLV 134
EA +R GAD + + QD E++ + +D +ID + L L QGK V
Sbjct: 209 VEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNYSEKTLSVYPKALAKQGKYV 268
Query: 135 LLGAPEKPLELPAFPLLTGEE 155
++G L A PL+T E
Sbjct: 269 MVGLFGADLHYHA-PLITLSE 288
>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|E Chain E, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|H Chain H, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
Length = 347
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 21 APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS 80
APL C+GIT Y +R LD + AKA+ T+I +++
Sbjct: 150 APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEA 208
Query: 81 -EAVERLGADSFLVSRDQD---EMQAAMGT--MDGIIDTVSAVHPLMPLIGLLKSQGKLV 134
EA +R GAD + + QD E++ + +D +ID + L L QGK V
Sbjct: 209 VEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNYSEKTLSVYPKALAKQGKYV 268
Query: 135 LLGAPEKPLELPAFPLLTGEE 155
++G L A PL+T E
Sbjct: 269 MVGLFGADLHYHA-PLITLSE 288
>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus
Solfataricus
Length = 347
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 8/138 (5%)
Query: 21 APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS 80
APL C+GIT Y +R LD + AKA+ T+I +++
Sbjct: 150 APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTXAVQIAKAVS-GATIIGVDVREEA 208
Query: 81 -EAVERLGADSFLVSRDQD---EMQAAMGT--MDGIIDTVSAVHPLMPLIGLLKSQGKLV 134
EA +R GAD + + QD E++ + +D +ID ++ L L QGK V
Sbjct: 209 VEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYV 268
Query: 135 LLGAPEKPLELPAFPLLT 152
+G L A PL+T
Sbjct: 269 XVGLFGADLHYHA-PLIT 285
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 8 VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGV 67
V+++ E LD A +C+G T Y Y G A+++G
Sbjct: 161 VLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGA 220
Query: 68 K-VTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMD 108
+ V VI+ SP++ A E +GAD L R+ + MD
Sbjct: 221 ENVIVIAGSPNRLKLA-EEIGADLTLNRRETSVEERRKAIMD 261
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
+ A+AMG++V ++ P K + + LGA+ + E A G +D +++
Sbjct: 144 QVARAMGLRVLAAASRPEKLALPLA-LGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE 200
Query: 120 LMPLIGLLKSQGKLVLLGAPE 140
+ +GLL G+LV +GA E
Sbjct: 201 VEESLGLLAHGGRLVYIGAAE 221
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 120 LMPLIGLLKSQGKLVL--LGAPEK-PLELPAFPLLTGEEEDSWWQSHWGVEGDSRDD 173
L+PL GL K QG+ +L LGAPE+ L+ P LL + + S ++ G+ D DD
Sbjct: 178 LLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQS-DETELGISYDEIDD 233
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZ8|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZA|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZA|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZB|A Chain A, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|B Chain B, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|C Chain C, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|D Chain D, Nad+ Synthetase From Bacillus Anthracis
Length = 284
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 120 LMPLIGLLKSQGKLVL--LGAPEK-PLELPAFPLLTGEEEDSWWQSHWGVEGDSRDD 173
L+PL GL K QG+ +L LGA E+ L++P LL E+ ++ G+ D DD
Sbjct: 179 LLPLTGLTKRQGRALLQELGADERLYLKMPTADLLD-EKPGQADETELGITYDQLDD 234
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 25/108 (23%)
Query: 62 AKAMGVKVTVISTSPSKK------------SEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
AK G + T+ PSK+ SE R A F + +DE +A MG ++
Sbjct: 237 AKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVE- 295
Query: 110 IIDTVSAVHPLM-PLIGLLKSQG------KLVLLGAPEKPLELPAFPL 150
A H L+ P L + +G K +L P P+ + + P
Sbjct: 296 -----CAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPF 338
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 25/108 (23%)
Query: 62 AKAMGVKVTVISTSPSKK------------SEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
AK G + T+ PSK+ SE R A F + +DE +A MG ++
Sbjct: 244 AKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVE- 302
Query: 110 IIDTVSAVHPLM-PLIGLLKSQG------KLVLLGAPEKPLELPAFPL 150
A H L+ P L + +G K +L P P+ + + P
Sbjct: 303 -----CAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPF 345
>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
+ A+A G++V ++ P K + + LGA+ + E A G +D +++
Sbjct: 144 QVARAXGLRVLAAASRPEKLALPLA-LGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE 200
Query: 120 LMPLIGLLKSQGKLVLLGAPE 140
+ +GLL G+LV +GA E
Sbjct: 201 VEESLGLLAHGGRLVYIGAAE 221
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 25/108 (23%)
Query: 62 AKAMGVKVTVISTSPSKK------------SEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
AK G + T+ PSK+ SE R A F + +DE +A MG ++
Sbjct: 230 AKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFALRAFEDEKKARMGVVE- 288
Query: 110 IIDTVSAVHPLMPLIGLLK-------SQGKLVLLGAPEKPLELPAFPL 150
A H L+ +L +Q K +L P P+ + + P
Sbjct: 289 -----CAKHELLQPFNVLYEREGEFVAQFKFTVLLMPNGPMRITSGPF 331
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 73 STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGII--DTVSAVHPLMPLIGLLKSQ 130
S P +A+ +L + + R+Q + ++ D + T + + P+ + G+ +
Sbjct: 215 SALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGE 274
Query: 131 GKLVLLGAPEKPLELPAFPLLTGEEEDSW 159
G+ G K ++ F L TGE ED W
Sbjct: 275 GRC---GPVTKRIQQAFFGLFTGETEDKW 300
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 73 STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGII--DTVSAVHPLMPLIGLLKSQ 130
S P +A+ +L + + R+Q + ++ D + T + + P+ + G+ +
Sbjct: 216 SALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGE 275
Query: 131 GKLVLLGAPEKPLELPAFPLLTGEEEDSW 159
G+ G K ++ F L TGE ED W
Sbjct: 276 GRC---GPVTKRIQQAFFGLFTGETEDKW 301
>pdb|1TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization Domains
From Rat
Length = 343
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 88 ADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGA 138
AD QD A++G D I+ +S V+ GL K G+L GA
Sbjct: 186 ADRTFAQFSQDIGLASLGASDEEIEKLSTVYWFTVEFGLCKQNGELKAYGA 236
>pdb|2TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization Domains
From Rat
Length = 343
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 88 ADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGA 138
AD QD A++G D I+ +S V+ GL K G+L GA
Sbjct: 186 ADRTFAQFSQDIGLASLGASDEEIEKLSTVYWFTVEFGLCKQNGELKAYGA 236
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 5 EHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG-MXXXXXXXXXXXXXXXKFAK 63
E +V++ + + A L+ G+TV LR KPG + ++AK
Sbjct: 103 EANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAK 162
Query: 64 AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
A+G K+ +SP K + A + LGA + +D + + DG
Sbjct: 163 ALGAKLIGTVSSPEKAAHA-KALGAWETIDYSHEDVAKRVLELTDG 207
>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella
Burnetii
Length = 321
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTV 114
+ AK G TVI+T+ + ++ LGA+ + ++D + A +D +ID V
Sbjct: 171 QLAKQKGT--TVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLV 223
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 126 LLKSQGKLVLLGAPEKPLELPAFPLLTGEEEDSWWQSHWGV 166
+L +QGKLV G PE+ +L E W+Q+ GV
Sbjct: 219 MLLAQGKLVACGTPEE--------VLNAETLTQWYQADLGV 251
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 68 KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ 101
K+ + +T+P K +AV LG D L + DE Q
Sbjct: 135 KIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQ 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,820,745
Number of Sequences: 62578
Number of extensions: 177456
Number of successful extensions: 510
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 42
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)