BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030695
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGL|Q Chain Q, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|R Chain R, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|S Chain S, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|U Chain U, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|V Chain V, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|W Chain W, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|X Chain X, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|Q Chain Q, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|R Chain R, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|S Chain S, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|U Chain U, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|V Chain V, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|W Chain W, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|X Chain X, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 21
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 154 DLPIARRKSLQRFLEKRKER 173
+LPIARR SL RFLEKRK+R
Sbjct: 1 ELPIARRASLHRFLEKRKDR 20
>pdb|3E4B|A Chain A, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|B Chain B, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|C Chain C, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|D Chain D, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
Length = 452
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 32/77 (41%)
Query: 48 IIKSVIASGSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVA 107
++K A+G + I L + P +FP+V + I + + E + T
Sbjct: 96 LLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155
Query: 108 VFDVHREKAEHILKLAV 124
+D H + E I K A+
Sbjct: 156 TYDQHLDDVERICKAAL 172
>pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 22 KPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAKSSISLPSTPKEEPITFPDVPLY 81
+P FKK R + I +NP+ + V+A +A +S L P PI V L
Sbjct: 124 RPSFKKGLRNEI--QVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALI 181
Query: 82 R 82
R
Sbjct: 182 R 182
>pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
Enzyme
Length = 757
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 22 KPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAKSSISLPSTPKEEPITFPDVPLY 81
+P FKK R + I +NP+ + V+A +A +S L P PI V L
Sbjct: 124 RPSFKKGLRNEI--QVVATIXALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALI 181
Query: 82 R 82
R
Sbjct: 182 R 182
>pdb|3ZZ3|A Chain A, Crystal Structure Of 3c Protease Mutant (N126y) Of
Coxsackievirus B3
pdb|3ZZ3|B Chain B, Crystal Structure Of 3c Protease Mutant (N126y) Of
Coxsackievirus B3
Length = 184
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 13 LENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
L +K+ ++ + K R FRDI+G ++K E+ ++V+A ++K
Sbjct: 63 LVDKDGTNLELTLLKLNRNEKFRDIRGFLAKEEVEVNEAVLAINTSK 109
>pdb|3ZYD|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
pdb|3ZZ5|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 74
pdb|3ZZ6|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Michael Receptor Inhibitor 75
pdb|3ZZ7|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 81
pdb|3ZZ8|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 82
pdb|3ZZ9|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 83
pdb|3ZZA|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 84
pdb|3ZZB|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 85
Length = 184
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 13 LENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
L +K+ ++ + K R FRDI+G ++K E+ ++V+A ++K
Sbjct: 63 LVDKDGTNLELTLLKLNRNEKFRDIRGFLAKEEVEVNEAVLAINTSK 109
>pdb|3ZZC|A Chain A, Crystal Structure Of 3c Protease Mutant (T68a And N126y)
Of Coxsackievirus B3 Complexed With Alpha,
Beta-Unsaturated Ethyl Ester Inhibitor 83
pdb|3ZZD|A Chain A, Crystal Structure Of 3c Protease Mutant (T68a And N126y)
Of Coxsackievirus B3 Complexed With Alpha,
Beta-Unsaturated Ethyl Ester Inhibitor 85
Length = 183
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 13 LENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
L +K+ ++ + K R FRDI+G ++K E+ ++V+A ++K
Sbjct: 62 LVDKDGANLELTLLKLNRNEKFRDIRGFLAKEEVEVNEAVLAINTSK 108
>pdb|2ZTX|A Chain A, Complex Structure Of Cvb3 3c Protease With Epdtc
pdb|2ZTY|A Chain A, Crystal Structure Of 3c Protease From Cvb3 In Space Group
C2
pdb|2ZTZ|A Chain A, Crystal Structure Of 3c Protease From Cvb3 In Space Group
P21
pdb|2ZTZ|B Chain B, Crystal Structure Of 3c Protease From Cvb3 In Space Group
P21
pdb|2ZU3|A Chain A, Complex Structure Of Cvb3 3c Protease With Tg-0204998
Length = 183
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 13 LENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
L +K+ ++ + K R FRDI+G ++K E+ ++V+A ++K
Sbjct: 62 LVDKDGTNLELTLLKLNRNEKFRDIRGFLAKEEVEVNEAVLAINTSK 108
>pdb|2VB0|A Chain A, Crystal Structure Of Coxsackievirus B3 Proteinase 3c
Length = 183
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 13 LENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
L +K+ ++ + K R FRDI+G ++K E+ ++V+A ++K
Sbjct: 62 LVDKDGTNLELTLLKLNRNEKFRDIRGFLAKEEVEVNEAVLAINTSK 108
>pdb|3ZZ4|A Chain A, Crystal Structure Of 3c Protease Mutant (T68a And N126y)
Of Coxsackievirus B3
pdb|3ZZ4|B Chain B, Crystal Structure Of 3c Protease Mutant (T68a And N126y)
Of Coxsackievirus B3
Length = 184
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 13 LENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
L +K+ ++ + K R FRDI+G ++K E+ ++V+A ++K
Sbjct: 63 LVDKDGANLELTLLKLNRNEKFRDIRGFLAKEEVEVNEAVLAINTSK 109
>pdb|3ZYE|A Chain A, Crystal Structure Of 3c Protease Mutant (T68a) Of
Coxsackievirus B3
Length = 184
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 13 LENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
L +K+ ++ + K R FRDI+G ++K E+ ++V+A ++K
Sbjct: 63 LVDKDGANLELTLLKLNRNEKFRDIRGFLAKEEVEVNEAVLAINTSK 109
>pdb|2ZU1|A Chain A, Crystal Structure Of Cvb3 3c Protease Mutant C147a
pdb|2ZU1|B Chain B, Crystal Structure Of Cvb3 3c Protease Mutant C147a
Length = 183
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 13 LENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
L +K+ ++ + K R FRDI+G ++K E+ ++V+A ++K
Sbjct: 62 LVDKDGTNLELTLLKLNRNEKFRDIRGFLAKEEVEVNEAVLAINTSK 108
>pdb|3OGK|Q Chain Q, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|R Chain R, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|S Chain S, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|U Chain U, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|V Chain V, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|W Chain W, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|X Chain X, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
Length = 22
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 159 RRKSLQRFLEKRKER 173
RR SL RFLEKRK+R
Sbjct: 1 RRASLHRFLEKRKDR 15
>pdb|3Q3X|A Chain A, Crystal Structure Of The Main Protease (3c) From Human
Enterovirus B Ev93
pdb|3Q3X|B Chain B, Crystal Structure Of The Main Protease (3c) From Human
Enterovirus B Ev93
Length = 191
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 13 LENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
L +K+ ++ + K R FRDI+G +++ E+ ++V+A ++K
Sbjct: 64 LVDKDGTNLELTLLKLNRNEKFRDIRGFLAREEVEVNEAVLAINTSK 110
>pdb|3Q3Y|A Chain A, Complex Structure Of Hevb Ev93 Main Protease 3c With
Compound 1 (Ag7404)
pdb|3Q3Y|B Chain B, Complex Structure Of Hevb Ev93 Main Protease 3c With
Compound 1 (Ag7404)
pdb|3RUO|A Chain A, Complex Structure Of Hevb Ev93 Main Protease 3c With
Rupintrivir (Ag7088)
pdb|3RUO|B Chain B, Complex Structure Of Hevb Ev93 Main Protease 3c With
Rupintrivir (Ag7088)
Length = 191
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 13 LENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
L +K+ ++ + K R FRDI+G +++ E+ ++V+A ++K
Sbjct: 64 LVDKDGTNLELTLLKLNRNEKFRDIRGFLAREEVEVNEAVLAINTSK 110
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 9/39 (23%)
Query: 97 PLTIFYNGTV-------AVFDV--HREKAEHILKLAVEG 126
PLTI+ NGT+ ++ DV HR KA I +++ G
Sbjct: 47 PLTIYVNGTITQGNSPQSLIDVKNHRGKAHEIKNISIIG 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,701,714
Number of Sequences: 62578
Number of extensions: 182672
Number of successful extensions: 375
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 33
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)