Query 030695
Match_columns 173
No_of_seqs 129 out of 300
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:29:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogl_Q JAZ1 incomplete degron 99.4 2.4E-14 8.1E-19 80.7 2.2 20 154-173 1-20 (21)
2 3ogk_Q JAZ1 incomplete degron 98.9 2.4E-10 8.2E-15 65.0 0.2 15 159-173 1-15 (22)
3 2e29_A ATP-dependent RNA helic 83.6 0.43 1.5E-05 34.6 1.6 30 94-123 52-81 (92)
4 2jrb_A ORF 1 protein; RNA bind 37.2 25 0.00087 25.4 2.9 22 96-119 47-69 (88)
5 3soo_A LINE-1 type transposase 30.4 41 0.0014 24.3 3.1 23 96-120 47-70 (88)
6 2l7y_A Putative endo-beta-N-ac 30.1 33 0.0011 25.1 2.6 19 93-111 61-79 (98)
7 1mj4_A Sulfite oxidase; cytoch 20.3 35 0.0012 23.3 1.1 28 97-126 21-54 (82)
8 3p04_A Uncharacterized BCR; SE 18.6 75 0.0026 22.5 2.6 24 103-126 27-53 (87)
9 1cyo_A Cytochrome B5; electron 18.6 38 0.0013 23.8 1.0 30 96-127 19-54 (93)
10 1vd2_A Protein kinase C, IOTA 18.2 56 0.0019 23.3 1.8 17 96-112 5-23 (89)
No 1
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=99.45 E-value=2.4e-14 Score=80.66 Aligned_cols=20 Identities=80% Similarity=1.247 Sum_probs=19.4
Q ss_pred CcchHHHHHhHHHHHhhcCC
Q 030695 154 DLPIARRKSLQRFLEKRKER 173 (173)
Q Consensus 154 dlPiARKaSLqRFLEKRKeR 173 (173)
|||||||+||||||||||+|
T Consensus 1 dlp~aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 1 ELPIARRASLHRFLEKRKDR 20 (26)
T ss_pred CcchhHHHHHHHHHHHhhcc
Confidence 79999999999999999998
No 2
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=98.87 E-value=2.4e-10 Score=65.04 Aligned_cols=15 Identities=80% Similarity=1.203 Sum_probs=14.3
Q ss_pred HHHHhHHHHHhhcCC
Q 030695 159 RRKSLQRFLEKRKER 173 (173)
Q Consensus 159 RKaSLqRFLEKRKeR 173 (173)
||+||||||||||||
T Consensus 1 Rk~SLqRFleKRk~R 15 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDR 15 (26)
T ss_pred CchhHHHHHHHHHHH
Confidence 799999999999998
No 3
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=83.56 E-value=0.43 Score=34.62 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=26.6
Q ss_pred CCCceeEEECcEEEEEeCCHHHHHHHHHHH
Q 030695 94 ETAPLTIFYNGTVAVFDVHREKAEHILKLA 123 (173)
Q Consensus 94 ~t~qLTIFY~G~V~VfDv~~~KA~~Im~lA 123 (173)
.-..||+.=++.-+|||||.|.+++|+...
T Consensus 52 ~v~~m~l~~d~~GavFDvP~e~~~~~~~~~ 81 (92)
T 2e29_A 52 QITRMCLLKGNMGVCFDVPTTESERLQAEW 81 (92)
T ss_dssp TCEEEEECTTSSEEEEEEEHHHHHHHHHHC
T ss_pred hhCeEEEecCCCEEEEECcHHHHHHHHhhC
Confidence 446899999999999999999999999653
No 4
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=37.15 E-value=25 Score=25.42 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=17.0
Q ss_pred CceeEEECcEEEEE-eCCHHHHHHH
Q 030695 96 APLTIFYNGTVAVF-DVHREKAEHI 119 (173)
Q Consensus 96 ~qLTIFY~G~V~Vf-Dv~~~KA~~I 119 (173)
+-|+++|+|++..| | .+|.++.
T Consensus 47 akLsf~~eGeiksF~d--kqkl~ef 69 (88)
T 2jrb_A 47 AKLSITIDGETKVFHD--KTKFTQY 69 (88)
T ss_dssp TEEEEESSSCEEEESS--HHHHHHH
T ss_pred eeeEEEECCeEeccCC--HHHHHHH
Confidence 68999999999999 6 3444443
No 5
>3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A
Probab=30.39 E-value=41 Score=24.27 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=17.7
Q ss_pred CceeEEECcEEEEE-eCCHHHHHHHH
Q 030695 96 APLTIFYNGTVAVF-DVHREKAEHIL 120 (173)
Q Consensus 96 ~qLTIFY~G~V~Vf-Dv~~~KA~~Im 120 (173)
+.|+++|+|++..| | .+|.++.+
T Consensus 47 akLsf~~eGeiksF~d--kqkl~eFi 70 (88)
T 3soo_A 47 VXLAFXCDGEIXTFSD--LQSLRXFA 70 (88)
T ss_dssp CCEEEECSSSEEEESS--HHHHHHHH
T ss_pred ceEEEEecCceeccCC--HHHccchh
Confidence 68999999999999 6 34555443
No 6
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=30.07 E-value=33 Score=25.13 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=17.1
Q ss_pred CCCCceeEEECcEEEEEeC
Q 030695 93 SETAPLTIFYNGTVAVFDV 111 (173)
Q Consensus 93 ~~t~qLTIFY~G~V~VfDv 111 (173)
+..+.|||.|.|.-.-|||
T Consensus 61 ~G~QtlTVtY~G~t~~f~V 79 (98)
T 2l7y_A 61 TGRQTLTLHYQGHEVSFDV 79 (98)
T ss_dssp CSSEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEECCEEEEEEE
Confidence 6778999999999999994
No 7
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=20.31 E-value=35 Score=23.32 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=19.5
Q ss_pred ceeEEECcEEEEEeCCHH------HHHHHHHHHhcC
Q 030695 97 PLTIFYNGTVAVFDVHRE------KAEHILKLAVEG 126 (173)
Q Consensus 97 qLTIFY~G~V~VfDv~~~------KA~~Im~lA~~~ 126 (173)
.+=|.++|+ ||||+.- -++.||..|++.
T Consensus 21 ~~wv~i~g~--VYDvt~f~~~HPGG~~~il~~aG~D 54 (82)
T 1mj4_A 21 GIWVTLGSE--VFDVTEFVDLHPGGPSKLMLAAGGP 54 (82)
T ss_dssp EEEEEETTE--EEECTTTGGGSTTCHHHHHTTTTSB
T ss_pred CeEEEECCE--EEEchHHHHhCCCHhHHHHHHcCCC
Confidence 377889998 6787642 246677777664
No 8
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=18.64 E-value=75 Score=22.54 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=20.2
Q ss_pred CcEEEEEe---CCHHHHHHHHHHHhcC
Q 030695 103 NGTVAVFD---VHREKAEHILKLAVEG 126 (173)
Q Consensus 103 ~G~V~VfD---v~~~KA~~Im~lA~~~ 126 (173)
+|+.+|+| +..+.|+.|+.++++.
T Consensus 27 ~~~~VvvNL~~ld~~~AqRivDF~sG~ 53 (87)
T 3p04_A 27 DGDAVVFDMSLLSREEARRIVDFAAGL 53 (87)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhccc
Confidence 67888886 7899999999998765
No 9
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=18.56 E-value=38 Score=23.76 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=20.4
Q ss_pred CceeEEECcEEEEEeCCH------HHHHHHHHHHhcCC
Q 030695 96 APLTIFYNGTVAVFDVHR------EKAEHILKLAVEGN 127 (173)
Q Consensus 96 ~qLTIFY~G~V~VfDv~~------~KA~~Im~lA~~~~ 127 (173)
..+=|.|+|. ||||+. --...|+..|++..
T Consensus 19 ~~~wv~i~g~--VYDvT~f~~~HPGG~~~i~~~aG~Da 54 (93)
T 1cyo_A 19 KSTWLILHYK--VYDLTKFLEEHPGGEEVLREQAGGDA 54 (93)
T ss_dssp TEEEEEETTE--EEECTTTTTTCTTCSHHHHHHTTSBC
T ss_pred CCEEEEECCE--EEECCCcchhCcChHHHHHHhcCccc
Confidence 3577889998 577653 23456777887754
No 10
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=18.17 E-value=56 Score=23.27 Aligned_cols=17 Identities=12% Similarity=0.581 Sum_probs=12.6
Q ss_pred CceeE--EECcEEEEEeCC
Q 030695 96 APLTI--FYNGTVAVFDVH 112 (173)
Q Consensus 96 ~qLTI--FY~G~V~VfDv~ 112 (173)
.+|+| +|+|.+.++.|+
T Consensus 5 ~~vkvK~~~~gdi~~~~v~ 23 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFE 23 (89)
T ss_dssp SCEEEEEESSSCEEEEEEC
T ss_pred CeEEEEEEeCCeEEEEECC
Confidence 44555 999999998644
Done!