BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030696
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1
Length = 418
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 17/79 (21%)
Query: 101 LSLSEKVIGDNPRCTECKAKGA-----VLCATCSGSGLYVDSILESQGIIVKVR--CLGC 153
LSLS V+ CT+CK KG+ + CA+C GSG+ V G+I +++ C C
Sbjct: 140 LSLSRNVL-----CTKCKGKGSKSGASMNCASCQGSGMKVSIRQLGPGMIQQMQHPCNEC 194
Query: 154 GGTGNIM-----CAECGGR 167
GTG ++ C +C G
Sbjct: 195 KGTGEMISDKDRCPQCKGE 213
>sp|A6LRN5|DNAJ_CLOB8 Chaperone protein DnaJ OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=dnaJ PE=3 SV=1
Length = 377
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 26/115 (22%)
Query: 80 LESLF--------RYDRPIPEERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA- 122
ES F R + P+ IE I L+ E V G N C C GA
Sbjct: 100 FESFFGGGGSNSRRRNGPVRGNDIEYTITLTFEEAVFGVEKEISVTRNENCEHCHGSGAE 159
Query: 123 -----VLCATCSGSG-LYVDSILESQGIIVKVRCLGCGGTGNIM---CAECGGRG 168
C TCSGSG + V + C C GTG I+ C+EC G+G
Sbjct: 160 PGTNAKTCPTCSGSGQVRVQRQTPLGSFVSTSTCDTCRGTGKIIEKPCSECRGKG 214
>sp|Q3AF07|DNAJ_CARHZ Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1
Length = 381
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 89 PIPEERIEKPIGLSLSEKVIGDNPR--------CTECKAKGA------VLCATCSGSGLY 134
P+P + IE + L+L E V G C C GA + C TC G G
Sbjct: 119 PVPGDDIEAVLELTLEEAVFGGEKELRVTRTETCGHCHGNGAEPGTPIITCPTCQGRGQI 178
Query: 135 VDSILESQGIIVKVR-CLGCGGTGNIM---CAECGGRG 168
+ G +V+ + C C G G I C ECGG G
Sbjct: 179 HQEVKTLFGRMVRSQVCSTCRGEGKIPKTPCRECGGSG 216
>sp|Q8NLY8|DNAJ2_CORGL Chaperone protein DnaJ 2 OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=dnaJ2 PE=3 SV=1
Length = 395
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Query: 95 IEKPIGLSLSEKVIGDNPRCTECKAKGA-----VLCATCSGSGLYVDSILESQGII-VKV 148
+E G ++ ++ GD P C C G+ C TC G+G E++G
Sbjct: 160 VEAAKGTTIPVELTGDAP-CNTCHGSGSKSGHPAKCGTCDGTGF----TSENKGAFGFSA 214
Query: 149 RCLGCGGTGNIM---CAECGGRG 168
C CGGTG I+ C C GRG
Sbjct: 215 PCATCGGTGEIITDPCDNCHGRG 237
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2
SV=1
Length = 397
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 12/67 (17%)
Query: 101 LSLSEKVIGDNPRCTECKAKGA-----VLCATCSGSGLYVDSILESQGIIVKVR--CLGC 153
LSLS VI C++C KG+ + CA+C GSG+ V G+I +++ C C
Sbjct: 119 LSLSRNVI-----CSKCNGKGSKSGASMRCASCQGSGMKVSIRQLGPGMIQQMQHPCNDC 173
Query: 154 GGTGNIM 160
GTG ++
Sbjct: 174 KGTGEMI 180
>sp|B1LCI2|DNAJ_THESQ Chaperone protein DnaJ OS=Thermotoga sp. (strain RQ2) GN=dnaJ PE=3
SV=1
Length = 369
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 121 GAVLCATCSGSGLYVDSILESQGIIVKVR-CLGCGGTGNI---MCAECGGRGHC 170
G + C +C G+G + G V R C CGGTG I C ECGG G
Sbjct: 169 GYINCPSCGGTGRIREERRSFFGYFVSERTCERCGGTGKIPREYCHECGGSGRV 222
>sp|Q05980|DNAJ_BRUO2 Chaperone protein DnaJ OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=dnaJ PE=2 SV=2
Length = 377
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 114 CTECKAKGA------VLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM---CAE 163
C EC GA C CSGSG + +QG V+ C GC G G I+ C +
Sbjct: 148 CDECSGSGAKPGSQPTTCTMCSGSG----RVRAAQGFFSVERTCPGCNGRGQIIKDPCEK 203
Query: 164 CGGRGHC 170
C G+G
Sbjct: 204 CHGQGRV 210
>sp|Q57AD6|DNAJ_BRUAB Chaperone protein DnaJ OS=Brucella abortus biovar 1 (strain 9-941)
GN=dnaJ PE=3 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 114 CTECKAKGA------VLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM---CAE 163
C EC GA C CSGSG + +QG V+ C GC G G I+ C +
Sbjct: 148 CDECSGSGAKPGSQPTTCTMCSGSG----RVRAAQGFFSVERTCPGCNGRGQIIKDPCEK 203
Query: 164 CGGRGHC 170
C G+G
Sbjct: 204 CHGQGRV 210
>sp|Q2YQV1|DNAJ_BRUA2 Chaperone protein DnaJ OS=Brucella abortus (strain 2308) GN=dnaJ
PE=3 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 114 CTECKAKGA------VLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM---CAE 163
C EC GA C CSGSG + +QG V+ C GC G G I+ C +
Sbjct: 148 CDECSGSGAKPGSQPTTCTMCSGSG----RVRAAQGFFSVERTCPGCNGRGQIIKDPCEK 203
Query: 164 CGGRGHC 170
C G+G
Sbjct: 204 CHGQGRV 210
>sp|B2S9C2|DNAJ_BRUA1 Chaperone protein DnaJ OS=Brucella abortus (strain S19) GN=dnaJ
PE=3 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 114 CTECKAKGA------VLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM---CAE 163
C EC GA C CSGSG + +QG V+ C GC G G I+ C +
Sbjct: 148 CDECSGSGAKPGSQPTTCTMCSGSG----RVRAAQGFFSVERTCPGCNGRGQIIKDPCEK 203
Query: 164 CGGRGHC 170
C G+G
Sbjct: 204 CHGQGRV 210
>sp|Q8FXX1|DNAJ_BRUSU Chaperone protein DnaJ OS=Brucella suis biovar 1 (strain 1330)
GN=dnaJ PE=3 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 114 CTECKAKGA------VLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM---CAE 163
C EC GA C CSGSG + +QG V+ C GC G G I+ C +
Sbjct: 148 CDECSGSGAKPGSQPTTCTMCSGSG----RVRAAQGFFSVERTCPGCNGRGQIIKDPCEK 203
Query: 164 CGGRGHC 170
C G+G
Sbjct: 204 CHGQGRV 210
>sp|B0CJX5|DNAJ_BRUSI Chaperone protein DnaJ OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=dnaJ PE=3 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 114 CTECKAKGA------VLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM---CAE 163
C EC GA C CSGSG + +QG V+ C GC G G I+ C +
Sbjct: 148 CDECSGSGAKPGSQPTTCTMCSGSG----RVRAAQGFFSVERTCPGCNGRGQIIKDPCEK 203
Query: 164 CGGRGHC 170
C G+G
Sbjct: 204 CHGQGRV 210
>sp|Q8YE77|DNAJ_BRUME Chaperone protein DnaJ OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=dnaJ PE=3 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 114 CTECKAKGA------VLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM---CAE 163
C EC GA C CSGSG + +QG V+ C GC G G I+ C +
Sbjct: 148 CDECSGSGAKPGSQPTTCTMCSGSG----RVRAAQGFFSVERTCPGCNGRGQIIKDPCEK 203
Query: 164 CGGRGHC 170
C G+G
Sbjct: 204 CHGQGRV 210
>sp|C0RG11|DNAJ_BRUMB Chaperone protein DnaJ OS=Brucella melitensis biotype 2 (strain
ATCC 23457) GN=dnaJ PE=3 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 114 CTECKAKGA------VLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM---CAE 163
C EC GA C CSGSG + +QG V+ C GC G G I+ C +
Sbjct: 148 CDECSGSGAKPGSQPTTCTMCSGSG----RVRAAQGFFSVERTCPGCNGRGQIIKDPCEK 203
Query: 164 CGGRGHC 170
C G+G
Sbjct: 204 CHGQGRV 210
>sp|A9M9V9|DNAJ_BRUC2 Chaperone protein DnaJ OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=dnaJ PE=3 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 114 CTECKAKGA------VLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM---CAE 163
C EC GA C CSGSG + +QG V+ C GC G G I+ C +
Sbjct: 148 CDECSGSGAKPGSQPTTCTMCSGSG----RVRAAQGFFSVERTCPGCNGRGQIIKDPCEK 203
Query: 164 CGGRGHC 170
C G+G
Sbjct: 204 CHGQGRV 210
>sp|A5IIT4|DNAJ_THEP1 Chaperone protein DnaJ OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1
Length = 369
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 121 GAVLCATCSGSGLYVDSILESQGIIVKVR-CLGCGGTGNI---MCAECGGRGHC 170
G + C +C G+G + G V R C CGGTG I C ECGG G
Sbjct: 169 GYINCPSCGGTGRIREERRSFFGYFVSERTCERCGGTGKIPREYCHECGGSGRV 222
>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain
BP-1) GN=dnaJ PE=3 SV=2
Length = 373
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 85 RYDRPIPEERIEKPIGLSLSEKVIGDNPR--------CTECKAKGA------VLCATCSG 130
R P E + + L E V G C C+ GA V C+TC G
Sbjct: 108 RQQGPTRGEDLRYDLKLEFREAVFGGEKEIRINHLETCKTCQGTGAKPGTRPVTCSTCGG 167
Query: 131 SGLYVDSILESQGIIVKVR-CLGCGGTGNIM---CAECGGRGH 169
G S G ++ C CGG+G ++ C CGG+GH
Sbjct: 168 VGQVRRSARTPFGSFTQLTTCPTCGGSGVVIEDRCESCGGQGH 210
>sp|Q0A7E4|DNAJ_ALHEH Chaperone protein DnaJ OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=dnaJ PE=3 SV=1
Length = 383
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 114 CTECKAKGAV------LCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM---CAEC 164
C C KG C TC G G D ++ V+ C CGG+G+++ C +C
Sbjct: 152 CDACDGKGTKEGSQPETCPTCKGHG---DVRIQQGFFSVQQTCPRCGGSGSVITDPCRKC 208
Query: 165 GGRGHC 170
GGRG
Sbjct: 209 GGRGRV 214
>sp|B9KAB9|DNAJ_THENN Chaperone protein DnaJ OS=Thermotoga neapolitana (strain ATCC 49049
/ DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1
Length = 370
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 121 GAVLCATCSGSGLYVDSILESQGIIVKVR-CLGCGGTGNI---MCAECGGRGHC 170
G + C C G+G + G V R C CGGTG + +C ECGG G
Sbjct: 170 GYISCPRCGGTGRIREEKRSFFGYFVSERTCDECGGTGRVPQELCHECGGSGRV 223
>sp|B7IFE0|DNAJ_THEAB Chaperone protein DnaJ OS=Thermosipho africanus (strain TCF52B)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 121 GAVLCATCSGSGLYVDSILESQGIIV-KVRCLGCGGTGNI---MCAECGGRG 168
G V C C G+G+ + G+IV + C CGGTG I C CGG G
Sbjct: 175 GWVSCPKCHGTGVVREERRTFLGVIVNQYTCNQCGGTGKIPGETCHVCGGSG 226
>sp|Q9WZV3|DNAJ_THEMA Chaperone protein DnaJ OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=dnaJ PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 121 GAVLCATCSGSGLYVDSILESQGIIVKVR-CLGCGGTGNI---MCAECGGRGHC 170
G + C +C G+G + G V R C CGGTG I C ECGG G
Sbjct: 169 GYMDCPSCGGTGRIREERRSFFGYFVSERTCERCGGTGKIPREYCHECGGSGRV 222
>sp|Q8C3L1|SSUH2_MOUSE Protein SSUH2 homolog OS=Mus musculus GN=Ssuh2 PE=2 SV=1
Length = 340
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 113 RCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECGGRG 168
+C+ C G V C++CSG+ RC C G+G C+ C GRG
Sbjct: 188 KCSGCHGAGMVRCSSCSGTKRKAKQ---------PRRCHLCSGSGRRRCSTCSGRG 234
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 19/59 (32%)
Query: 113 RCTEC-----KAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECGG 166
RC+ C KAK C CSGSG + RC C G GN CA C G
Sbjct: 199 RCSSCSGTKRKAKQPRRCHLCSGSG--------------RRRCSTCSGRGNKTCATCKG 243
>sp|B2TLZ8|DNAJ_CLOBB Chaperone protein DnaJ OS=Clostridium botulinum (strain Eklund 17B
/ Type B) GN=dnaJ PE=3 SV=1
Length = 373
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 82 SLFRYDRPIPEERIEKPIGLSLSEKVIGDNPR--------CTECKAKGA------VLCAT 127
S R + P+ IE + L+ E V G C C GA C T
Sbjct: 105 STRRRNGPVNGNDIEYTVTLTFEEAVFGVEKEITVNRSESCEHCNGSGAEPGTSKKTCPT 164
Query: 128 CSGSG-LYVDSILESQGIIVKVRCLGCGGTGNIM---CAECGGRGHC 170
CSG+G + V + C C GTGNI+ C C G G+
Sbjct: 165 CSGTGQVRVQRQTPLGSFVSTSTCDRCSGTGNIIEKPCTHCRGNGNV 211
>sp|Q7M9T3|DNAJ_WOLSU Chaperone protein DnaJ OS=Wolinella succinogenes (strain ATCC 29543
/ DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=dnaJ
PE=3 SV=1
Length = 374
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 34/132 (25%)
Query: 55 GSVSPSACGGSESSSTGNEQRRRSSLESLFRYDRPIPEERIEKPIGLSLSEKVIG----- 109
GS+ S GG SSS+ R+RS +Y+ + E + LS E + G
Sbjct: 95 GSIFDSVFGGGFSSSS----RKRSGP----KYNLDLAME-----LDLSFKEAIFGCKKEI 141
Query: 110 ---DNPRCTECKAKGAV-----LCATCSGSGLYVDSILESQGIIVKVR-CLGCGGTGNIM 160
C +CK GA C C G G + QG + + C CGG+G +
Sbjct: 142 KIRYKDACPDCKGTGAKEGKIETCPDCGGRG----QVFIRQGFMTFAQTCPKCGGSGERI 197
Query: 161 ---CAECGGRGH 169
C +C G+GH
Sbjct: 198 KEKCPKCNGKGH 209
>sp|Q9HRY3|DNAJ_HALSA Chaperone protein DnaJ OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=dnaJ PE=3 SV=1
Length = 391
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 21/67 (31%)
Query: 125 CATCSGSGLYVDSILES------QGIIVKVR------------CLGCGGTGNI---MCAE 163
CA C GSG D+ + + QG++ +VR C CGG G + C+
Sbjct: 165 CADCGGSGYPEDADVRTCPQCDGQGVVTQVRQTPLGRVQQRQECSRCGGEGELHSETCST 224
Query: 164 CGGRGHC 170
CGG+G
Sbjct: 225 CGGQGQT 231
>sp|B0R3H3|DNAJ_HALS3 Chaperone protein DnaJ OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=dnaJ PE=3 SV=1
Length = 391
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 21/67 (31%)
Query: 125 CATCSGSGLYVDSILES------QGIIVKVR------------CLGCGGTGNI---MCAE 163
CA C GSG D+ + + QG++ +VR C CGG G + C+
Sbjct: 165 CADCGGSGYPEDADVRTCPQCDGQGVVTQVRQTPLGRVQQRQECSRCGGEGELHSETCST 224
Query: 164 CGGRGHC 170
CGG+G
Sbjct: 225 CGGQGQT 231
>sp|Q8A8C3|DNAJ_BACTN Chaperone protein DnaJ OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=dnaJ
PE=3 SV=1
Length = 396
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 121 GAVLCATCSGSGLYVDSILESQGIIV-----KVRCLGCGGTGNIM---CAECGGRG 168
G+ C TC GSG S++ +Q I+ + C C G G I+ C ECGG G
Sbjct: 180 GSETCPTCKGSG----SVIRNQQTILGTMQTRTTCPTCNGEGKIIKNKCKECGGDG 231
>sp|B2V2I6|DNAJ_CLOBA Chaperone protein DnaJ OS=Clostridium botulinum (strain Alaska E43
/ Type E3) GN=dnaJ PE=3 SV=1
Length = 373
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 82 SLFRYDRPIPEERIEKPIGLSLSEKVIGDNPR--------CTECKAKGA------VLCAT 127
S R + P+ IE + L+ E V G C C GA C T
Sbjct: 105 STRRRNGPVNGNDIEYTLTLTFEEAVFGVEKEITVNRSESCEHCNGSGAEPGTSKKTCPT 164
Query: 128 CSGSG-LYVDSILESQGIIVKVRCLGCGGTGNIM---CAECGGRGHC 170
CSG+G + V + C C GTGNI+ C C G G+
Sbjct: 165 CSGTGQVRVQRQTPLGSFVSTSTCDRCSGTGNIIEKPCTHCRGNGNV 211
>sp|A6LJ63|DNAJ_THEM4 Chaperone protein DnaJ OS=Thermosipho melanesiensis (strain BI429 /
DSM 12029) GN=dnaJ PE=3 SV=1
Length = 373
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 121 GAVLCATCSGSGLYVDSILESQGIIV-KVRCLGCGGTGNI---MCAECGGRG 168
G V C C G+G + G+IV + C CGGTG I C CGG G
Sbjct: 170 GWVTCPKCHGTGTVREERRTFLGVIVNQYTCNQCGGTGKIPGESCRVCGGTG 221
>sp|P30725|DNAJ_CLOAB Chaperone protein DnaJ OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=dnaJ PE=2 SV=2
Length = 374
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Query: 85 RYDRPIPEERIEKPIGLSLSEKVIG--------DNPRCTECKAKGAV------LCATCSG 130
R D P +E I L+ E V G + C C GA C C G
Sbjct: 113 RKDAPQRGNDMEYSISLTFEEAVFGVEKSINITRSENCETCGGTGAKKGTSPKTCDKCGG 172
Query: 131 SG-LYVDSILESQGIIVKVRCLGCGGTGNIM---CAECGGRGHCGPK 173
+G + V + + C CGG G I+ C EC G GH K
Sbjct: 173 TGTIRVQRNTPLGSFVTQSSCDKCGGRGTIISDPCHECHGAGHVRKK 219
>sp|Q24SS4|DNAJ_DESHY Chaperone protein DnaJ OS=Desulfitobacterium hafniense (strain Y51)
GN=dnaJ PE=3 SV=1
Length = 377
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 84 FRYDRPIPEER----IEKPIGLSLSEKVIGDNPRCTECKAKGA------VLCATCSGSGL 133
RYD I E EK I + E CTEC G+ C+ C G+G
Sbjct: 117 LRYDLTITFEEAAFGTEKEIQVPRQET-------CTECHGSGSAPGTHPTTCSQCHGTGQ 169
Query: 134 YVDSILESQGIIVKVR-CLGCGGTGNIM---CAECGGRG 168
+ G I R C C G+G + C EC G+G
Sbjct: 170 VKATQRTPFGAIQTARTCPACNGSGQFISSPCKECSGKG 208
>sp|B8FUN3|DNAJ_DESHD Chaperone protein DnaJ OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=dnaJ PE=3 SV=1
Length = 377
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 84 FRYDRPIPEER----IEKPIGLSLSEKVIGDNPRCTECKAKGA------VLCATCSGSGL 133
RYD I E EK I + E CTEC G+ C+ C G+G
Sbjct: 117 LRYDLTITFEEAAFGTEKEIQVPRQET-------CTECHGSGSAPGTHPTTCSQCHGTGQ 169
Query: 134 YVDSILESQGIIVKVR-CLGCGGTGNIM---CAECGGRG 168
+ G I R C C G+G + C EC G+G
Sbjct: 170 VKATQRTPFGAIQTARTCPACNGSGQFISSPCKECSGKG 208
>sp|A9BNG6|DNAJ_DELAS Chaperone protein DnaJ OS=Delftia acidovorans (strain DSM 14801 /
SPH-1) GN=dnaJ PE=3 SV=1
Length = 380
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 122 AVLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM---CAECGGRG 168
A C TC+G G S+ QG V+ C C GTG I+ C CGG+G
Sbjct: 167 AKTCTTCNGMG----SVQMRQGFFSVQQTCPHCRGTGKIIPEPCTSCGGQG 213
>sp|A7Z6W0|DNAJ_BACA2 Chaperone protein DnaJ OS=Bacillus amyloliquefaciens (strain FZB42)
GN=dnaJ PE=3 SV=1
Length = 375
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 114 CTECKAKGAV------LCATCSGSG-LYVDSILESQGIIVKVRCLGCGGTGNIM---CAE 163
C CK GA C+ C GSG L V+ ++ + C C GTG I+ C++
Sbjct: 145 CETCKGSGAKPGTKPDTCSHCGGSGQLNVEQNTPFGKVVNRRVCHHCEGTGKIIKNKCSD 204
Query: 164 CGGRG 168
CGG G
Sbjct: 205 CGGTG 209
>sp|Q601X8|DNAJ_MYCH2 Chaperone protein DnaJ OS=Mycoplasma hyopneumoniae (strain 232)
GN=dnaJ PE=3 SV=2
Length = 368
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 21/103 (20%)
Query: 85 RYDRPIPEERIEKPIGLSLSEKVIGDN--------PRCTECKAKGA------VLCATCSG 130
+Y RP+ E + I +S E ++G +C CK GA C C G
Sbjct: 115 KYSRPLKGENFQAKIYISFIESILGKEISQKLTKYDQCDNCKGSGANSSSDITTCYNCQG 174
Query: 131 SGLYVDSILESQG---IIVKVRCLGCGGTG-NIM--CAECGGR 167
G+ + +L G + K C C G+G NI C +C G+
Sbjct: 175 RGMQTE-VLNIPGFGRVQNKTTCSVCLGSGKNITKNCKKCRGK 216
>sp|B9MJZ0|DNAJ_CALBD Chaperone protein DnaJ OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=dnaJ PE=3 SV=1
Length = 388
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 18/90 (20%)
Query: 99 IGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGI 144
+ L+L E V G +C+ C G V C C G+G G
Sbjct: 137 LELTLKESVFGCEKEIPIYRTEKCSVCGGSGVKPGSAPVRCQKCGGTGQIRSRQATFFGE 196
Query: 145 IVKVR-CLGCGGTGNIM---CAECGGRGHC 170
++ C CGGTG I+ C ECGG G+
Sbjct: 197 FTTIKTCDACGGTGTIITDPCRECGGTGNV 226
>sp|A4IR30|DNAJ_GEOTN Chaperone protein DnaJ OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=dnaJ PE=3 SV=1
Length = 381
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 125 CATCSGSGLYVDSILESQGIIVKVR-CLGCGGTGNIM---CAECGGRGHC 170
C C GSG G IV R C CGGTG + C CGG GH
Sbjct: 166 CPHCHGSGQVTSEQATPFGRIVNRRTCPVCGGTGRHIPEKCPTCGGTGHV 215
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,912,598
Number of Sequences: 539616
Number of extensions: 2926380
Number of successful extensions: 8737
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 8564
Number of HSP's gapped (non-prelim): 349
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)