Query 030696
Match_columns 173
No_of_seqs 167 out of 1747
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.5 5.8E-14 1.2E-18 125.8 7.6 61 110-172 141-211 (371)
2 PRK14298 chaperone protein Dna 99.3 6.3E-12 1.4E-16 112.4 7.7 80 91-171 113-211 (377)
3 PRK14282 chaperone protein Dna 99.3 8E-12 1.7E-16 111.2 7.7 79 93-171 126-222 (369)
4 PRK14279 chaperone protein Dna 99.3 8.6E-12 1.9E-16 112.0 7.6 74 94-171 148-239 (392)
5 PRK14286 chaperone protein Dna 99.3 1E-11 2.3E-16 110.8 7.4 74 94-171 125-216 (372)
6 TIGR02349 DnaJ_bact chaperone 99.3 1.6E-11 3.5E-16 108.3 8.5 81 91-171 115-213 (354)
7 PRK14278 chaperone protein Dna 99.3 1.3E-11 2.8E-16 110.4 7.5 78 93-171 113-209 (378)
8 PRK14301 chaperone protein Dna 99.2 1.6E-11 3.6E-16 109.5 7.2 58 110-171 143-210 (373)
9 PRK14285 chaperone protein Dna 99.2 1.5E-11 3.3E-16 109.4 6.8 76 92-171 119-212 (365)
10 PRK14276 chaperone protein Dna 99.2 2E-11 4.3E-16 109.2 7.6 76 94-171 121-216 (380)
11 PRK14277 chaperone protein Dna 99.2 2.2E-11 4.8E-16 109.0 7.6 79 93-171 129-225 (386)
12 PRK14280 chaperone protein Dna 99.2 2.4E-11 5.2E-16 108.5 7.7 77 93-171 117-213 (376)
13 PRK14300 chaperone protein Dna 99.2 2.4E-11 5.2E-16 108.3 7.5 75 93-171 119-211 (372)
14 PRK14284 chaperone protein Dna 99.2 1.9E-11 4.2E-16 109.6 6.7 58 110-171 157-224 (391)
15 PRK10767 chaperone protein Dna 99.2 2.5E-11 5.5E-16 107.9 7.4 75 93-171 116-208 (371)
16 PRK14296 chaperone protein Dna 99.2 2.4E-11 5.3E-16 108.5 7.2 77 93-171 123-219 (372)
17 PRK14295 chaperone protein Dna 99.2 2.6E-11 5.6E-16 108.9 7.3 75 93-171 140-232 (389)
18 PRK14281 chaperone protein Dna 99.2 3.1E-11 6.8E-16 108.5 7.2 62 110-171 162-232 (397)
19 PRK14294 chaperone protein Dna 99.2 3.3E-11 7.2E-16 107.2 7.2 58 110-171 143-210 (366)
20 PRK14288 chaperone protein Dna 99.2 2.9E-11 6.4E-16 107.8 6.9 57 111-171 140-205 (369)
21 PRK14287 chaperone protein Dna 99.2 4.4E-11 9.5E-16 106.8 7.4 80 92-171 111-208 (371)
22 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.2 5.1E-11 1.1E-15 82.4 5.4 54 114-168 1-66 (66)
23 PRK14289 chaperone protein Dna 99.2 5.9E-11 1.3E-15 106.1 7.2 62 110-171 153-224 (386)
24 PRK14297 chaperone protein Dna 99.2 6.9E-11 1.5E-15 105.6 7.5 78 93-171 122-218 (380)
25 PRK14291 chaperone protein Dna 99.1 8.7E-11 1.9E-15 105.1 7.2 58 110-171 155-221 (382)
26 PLN03165 chaperone protein dna 99.1 1.2E-10 2.6E-15 89.0 6.6 57 111-171 41-99 (111)
27 PTZ00037 DnaJ_C chaperone prot 99.1 1.2E-10 2.7E-15 105.8 7.3 60 110-171 149-221 (421)
28 PRK14293 chaperone protein Dna 99.1 1.4E-10 3.1E-15 103.4 7.4 61 110-171 142-213 (374)
29 PRK14290 chaperone protein Dna 99.1 1.8E-10 3.9E-15 102.4 7.7 60 110-171 148-218 (365)
30 PRK14283 chaperone protein Dna 99.1 1.8E-10 4E-15 102.8 7.4 61 111-171 146-216 (378)
31 PRK14292 chaperone protein Dna 99.1 2.1E-10 4.5E-15 102.1 7.2 78 94-171 114-210 (371)
32 COG0484 DnaJ DnaJ-class molecu 98.8 5.1E-09 1.1E-13 94.1 4.6 87 62-160 106-210 (371)
33 KOG0712 Molecular chaperone (D 98.8 9.8E-09 2.1E-13 91.3 5.2 88 69-173 100-201 (337)
34 PRK14279 chaperone protein Dna 97.9 8.6E-06 1.9E-10 73.5 4.1 75 74-160 151-239 (392)
35 COG1107 Archaea-specific RecJ- 97.9 6.5E-06 1.4E-10 78.1 3.0 59 111-170 2-80 (715)
36 PRK14288 chaperone protein Dna 97.9 1.4E-05 3E-10 71.5 4.6 74 74-160 118-205 (369)
37 PRK14296 chaperone protein Dna 97.9 1.6E-05 3.5E-10 71.3 4.4 76 73-159 126-218 (372)
38 KOG2813 Predicted molecular ch 97.8 8.6E-06 1.9E-10 72.6 2.2 22 111-132 187-208 (406)
39 PRK14298 chaperone protein Dna 97.8 1.5E-05 3.2E-10 71.7 3.7 76 73-160 118-211 (377)
40 PRK14281 chaperone protein Dna 97.8 1.6E-05 3.5E-10 71.8 3.7 76 74-160 141-232 (397)
41 PRK14286 chaperone protein Dna 97.8 2E-05 4.4E-10 70.6 4.1 75 74-160 128-216 (372)
42 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.8 1.4E-05 2.9E-10 55.2 2.3 37 111-157 15-66 (66)
43 PRK14282 chaperone protein Dna 97.8 2E-05 4.4E-10 70.4 4.0 75 74-160 130-222 (369)
44 PRK14280 chaperone protein Dna 97.8 2.2E-05 4.9E-10 70.3 3.7 75 74-160 121-213 (376)
45 PRK14301 chaperone protein Dna 97.7 2.4E-05 5.2E-10 70.1 3.8 75 74-160 122-210 (373)
46 PRK14290 chaperone protein Dna 97.7 2.4E-05 5.2E-10 69.8 3.6 77 73-160 126-218 (365)
47 PRK14285 chaperone protein Dna 97.7 2.4E-05 5.1E-10 70.0 3.3 75 74-160 124-212 (365)
48 PRK14295 chaperone protein Dna 97.7 3E-05 6.5E-10 69.9 4.0 77 73-160 143-232 (389)
49 PTZ00037 DnaJ_C chaperone prot 97.7 3.7E-05 8.1E-10 70.3 4.5 79 73-160 127-221 (421)
50 PRK14276 chaperone protein Dna 97.7 2.3E-05 5.1E-10 70.3 3.2 75 74-160 124-216 (380)
51 KOG2813 Predicted molecular ch 97.7 1.3E-05 2.8E-10 71.5 1.5 46 111-170 198-268 (406)
52 PRK14278 chaperone protein Dna 97.7 2.4E-05 5.1E-10 70.3 3.1 76 73-160 116-209 (378)
53 PRK14284 chaperone protein Dna 97.7 2.2E-05 4.7E-10 70.7 2.9 75 73-159 135-223 (391)
54 PRK14300 chaperone protein Dna 97.7 2.7E-05 5.9E-10 69.7 3.4 75 74-160 123-211 (372)
55 PRK14294 chaperone protein Dna 97.7 3.3E-05 7.1E-10 69.0 3.6 76 73-160 121-210 (366)
56 PRK14297 chaperone protein Dna 97.7 3.5E-05 7.6E-10 69.1 3.7 75 73-159 125-217 (380)
57 PRK10767 chaperone protein Dna 97.7 4.1E-05 8.9E-10 68.3 4.0 77 73-160 119-208 (371)
58 PRK14277 chaperone protein Dna 97.7 4E-05 8.8E-10 68.9 3.7 77 73-160 132-225 (386)
59 TIGR02349 DnaJ_bact chaperone 97.6 5.9E-05 1.3E-09 66.8 3.6 76 73-160 120-213 (354)
60 PRK14287 chaperone protein Dna 97.6 5.1E-05 1.1E-09 68.0 3.1 75 74-160 116-208 (371)
61 PRK14289 chaperone protein Dna 97.5 6.2E-05 1.3E-09 67.6 3.4 75 74-160 132-224 (386)
62 PRK14291 chaperone protein Dna 97.4 0.00013 2.9E-09 65.5 4.1 74 74-160 134-221 (382)
63 PRK14293 chaperone protein Dna 97.4 0.00015 3.3E-09 64.9 3.8 74 74-159 121-212 (374)
64 PRK14292 chaperone protein Dna 97.3 0.0002 4.2E-09 64.0 3.9 76 74-160 117-210 (371)
65 PRK14283 chaperone protein Dna 97.3 0.00021 4.6E-09 64.1 3.5 76 73-160 123-216 (378)
66 COG1107 Archaea-specific RecJ- 97.1 0.00044 9.5E-09 65.9 3.8 45 111-165 18-87 (715)
67 PLN03165 chaperone protein dna 96.8 0.0011 2.5E-08 50.7 3.0 34 112-159 53-98 (111)
68 KOG0712 Molecular chaperone (D 96.7 0.0012 2.7E-08 59.1 3.1 67 92-170 100-182 (337)
69 KOG0715 Molecular chaperone (D 96.2 0.0024 5.3E-08 55.8 1.8 70 99-171 144-230 (288)
70 TIGR02642 phage_xxxx uncharact 96.0 0.0036 7.8E-08 51.9 2.0 29 123-160 100-128 (186)
71 KOG2824 Glutaredoxin-related p 95.6 0.013 2.9E-07 51.3 3.8 51 112-165 230-280 (281)
72 TIGR02642 phage_xxxx uncharact 95.6 0.0088 1.9E-07 49.6 2.5 26 110-135 98-128 (186)
73 cd03031 GRX_GRX_like Glutaredo 94.4 0.045 9.7E-07 43.6 3.5 49 111-161 99-147 (147)
74 cd03031 GRX_GRX_like Glutaredo 87.6 0.59 1.3E-05 37.2 3.1 35 122-170 99-145 (147)
75 KOG2824 Glutaredoxin-related p 82.4 1.3 2.8E-05 39.1 3.1 35 123-171 230-275 (281)
76 TIGR00630 uvra excinuclease AB 80.7 1 2.3E-05 45.3 2.2 31 124-158 738-770 (924)
77 KOG0715 Molecular chaperone (D 77.6 0.89 1.9E-05 39.8 0.5 68 81-160 150-230 (288)
78 PRK00349 uvrA excinuclease ABC 75.6 1.7 3.8E-05 43.9 2.0 30 124-157 740-771 (943)
79 PF07092 DUF1356: Protein of u 74.9 1.5 3.3E-05 37.8 1.2 23 111-133 27-49 (238)
80 TIGR00630 uvra excinuclease AB 69.9 2.9 6.2E-05 42.3 2.0 23 148-170 737-771 (924)
81 PRK00635 excinuclease ABC subu 67.1 3.4 7.4E-05 44.6 2.0 30 124-157 1609-1640(1809)
82 TIGR03655 anti_R_Lar restricti 61.8 13 0.00029 24.2 3.4 36 123-158 2-37 (53)
83 PRK00349 uvrA excinuclease ABC 61.1 4.7 0.0001 40.9 1.7 23 148-170 739-773 (943)
84 PRK00635 excinuclease ABC subu 55.5 6.6 0.00014 42.6 1.7 21 113-133 722-751 (1809)
85 COG0178 UvrA Excinuclease ATPa 55.1 8.6 0.00019 38.9 2.3 29 124-156 732-762 (935)
86 PRK14890 putative Zn-ribbon RN 52.6 12 0.00025 25.9 2.0 18 148-165 37-55 (59)
87 COG0178 UvrA Excinuclease ATPa 51.8 8.7 0.00019 38.9 1.7 22 148-169 731-764 (935)
88 PF07092 DUF1356: Protein of u 51.5 6.1 0.00013 34.1 0.6 12 148-159 39-50 (238)
89 PF03589 Antiterm: Antitermina 45.1 9 0.00019 28.4 0.5 36 124-159 7-44 (95)
90 PRK04023 DNA polymerase II lar 43.1 21 0.00045 36.9 2.9 45 111-167 626-672 (1121)
91 PF08271 TF_Zn_Ribbon: TFIIB z 42.7 19 0.00041 22.4 1.7 10 124-133 2-11 (43)
92 PF14353 CpXC: CpXC protein 40.3 42 0.00091 25.2 3.6 15 145-159 36-50 (128)
93 PF13453 zf-TFIIB: Transcripti 37.0 56 0.0012 20.0 3.2 27 124-155 1-27 (41)
94 PRK00488 pheS phenylalanyl-tRN 36.8 20 0.00043 32.4 1.5 28 103-133 252-279 (339)
95 COG1198 PriA Primosomal protei 36.8 51 0.0011 32.8 4.4 55 103-167 427-484 (730)
96 PRK05978 hypothetical protein; 35.7 18 0.0004 29.0 1.0 7 148-154 53-59 (148)
97 PRK14714 DNA polymerase II lar 35.2 31 0.00066 36.5 2.7 44 111-166 667-717 (1337)
98 PF15616 TerY-C: TerY-C metal 34.8 60 0.0013 25.6 3.8 18 154-171 101-118 (131)
99 PF08273 Prim_Zn_Ribbon: Zinc- 32.8 30 0.00065 21.8 1.5 10 124-133 5-14 (40)
100 PF13186 SPASM: Iron-sulfur cl 31.3 44 0.00096 21.1 2.1 36 47-85 6-41 (64)
101 TIGR00595 priA primosomal prot 30.3 75 0.0016 29.8 4.3 49 111-168 213-263 (505)
102 TIGR02098 MJ0042_CXXC MJ0042 f 29.2 66 0.0014 19.1 2.5 7 148-154 26-32 (38)
103 smart00778 Prim_Zn_Ribbon Zinc 29.1 56 0.0012 20.3 2.2 10 124-133 5-14 (37)
104 PF12387 Peptidase_C74: Pestiv 28.3 19 0.00041 30.1 -0.0 22 112-133 163-186 (200)
105 PRK14873 primosome assembly pr 27.5 80 0.0017 30.9 4.0 61 99-168 371-432 (665)
106 PF14354 Lar_restr_allev: Rest 26.3 84 0.0018 20.4 2.9 10 123-133 4-13 (61)
107 PF08792 A2L_zn_ribbon: A2L zi 24.0 72 0.0016 19.2 2.0 10 124-133 5-14 (33)
108 PF12387 Peptidase_C74: Pestiv 23.4 33 0.00072 28.7 0.5 27 123-161 163-190 (200)
109 PF09538 FYDLN_acid: Protein o 23.3 56 0.0012 24.8 1.7 26 105-130 3-34 (108)
110 PRK00420 hypothetical protein; 22.5 58 0.0013 25.0 1.7 7 148-154 41-47 (112)
111 smart00440 ZnF_C2C2 C2C2 Zinc 22.3 1.9E+02 0.0041 17.8 3.8 29 124-154 2-35 (40)
112 COG5082 AIR1 Arginine methyltr 21.7 84 0.0018 26.4 2.6 24 110-133 59-89 (190)
113 PF07754 DUF1610: Domain of un 21.5 71 0.0015 18.1 1.5 6 148-153 17-22 (24)
114 PF13719 zinc_ribbon_5: zinc-r 20.7 72 0.0016 19.3 1.5 10 124-133 4-13 (37)
115 TIGR02538 type_IV_pilB type IV 20.7 48 0.001 31.5 1.1 8 111-118 453-460 (564)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.8e-14 Score=125.77 Aligned_cols=61 Identities=34% Similarity=0.843 Sum_probs=50.6
Q ss_pred CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEecc
Q 030696 110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCGP 172 (173)
Q Consensus 110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~~ 172 (173)
+.+.|+.|+|+|+ ++|++|+|+|++. +.+..|.++. ++|++|+|+|+++ |++|+|.|++..
T Consensus 141 ~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~--~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~ 211 (371)
T COG0484 141 RSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVR--TVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKK 211 (371)
T ss_pred eeeECCcCCCCCCCCCCCCCcCCCCCCcCeEE--EEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEee
Confidence 4789999999987 7999999999943 2221277665 9999999999999 999999999753
No 2
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=6.3e-12 Score=112.42 Aligned_cols=80 Identities=29% Similarity=0.703 Sum_probs=63.1
Q ss_pred cccceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeec-CeEEE-EeCCCCC
Q 030696 91 PEERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQ-GIIVK-VRCLGCG 154 (173)
Q Consensus 91 ~~~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~-G~~~~-~~C~~C~ 154 (173)
++.++...+.++|++.+.| +.+.|..|+|+|. .+|+.|+|+|+++. .++.. |+++. ++|+.|+
T Consensus 113 ~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~-~~~~~~g~~~~~~~C~~C~ 191 (377)
T PRK14298 113 RGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTT-TRSTPLGQFVTTTTCSTCH 191 (377)
T ss_pred CCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEE-EEecCceeEEEEEeCCCCC
Confidence 4556777777788887766 4789999999997 67999999999653 22222 45544 9999999
Q ss_pred ccceEe---CCCCcCeeEec
Q 030696 155 GTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 155 G~G~ii---C~~C~G~G~v~ 171 (173)
|+|+++ |+.|+|+|++.
T Consensus 192 G~G~~~~~~C~~C~G~g~v~ 211 (377)
T PRK14298 192 GRGQVIESPCPVCSGTGKVR 211 (377)
T ss_pred CCCcccCCCCCCCCCccEEE
Confidence 999988 99999999874
No 3
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=8e-12 Score=111.21 Aligned_cols=79 Identities=37% Similarity=0.762 Sum_probs=58.3
Q ss_pred cceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccc
Q 030696 93 ERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTG 157 (173)
Q Consensus 93 ~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G 157 (173)
.++...+.++|++.+.| +.+.|..|+|+|. .+|+.|+|+|+++...+...|++++ ++|+.|+|+|
T Consensus 126 ~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G 205 (369)
T PRK14282 126 EDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTG 205 (369)
T ss_pred CCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcc
Confidence 34444444455544433 4789999999997 6899999999965322222377766 9999999999
Q ss_pred eEe---CCCCcCeeEec
Q 030696 158 NIM---CAECGGRGHCG 171 (173)
Q Consensus 158 ~ii---C~~C~G~G~v~ 171 (173)
+++ |+.|+|.|++.
T Consensus 206 ~~~~~~C~~C~G~g~v~ 222 (369)
T PRK14282 206 KIPGEYCHECGGSGRIR 222 (369)
T ss_pred eeCCCCCCCCCCceeEE
Confidence 998 99999999864
No 4
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=8.6e-12 Score=112.05 Aligned_cols=74 Identities=38% Similarity=0.781 Sum_probs=57.0
Q ss_pred ceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccce
Q 030696 94 RIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGN 158 (173)
Q Consensus 94 ~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ 158 (173)
++...+.|+|++++.| +.+.|+.|+|+|. .+|+.|+|+|++ ...+|++++ ++|+.|+|+|+
T Consensus 148 di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~----~~~~g~~~~~~~C~~C~G~G~ 223 (392)
T PRK14279 148 DLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVI----SRNQGAFGFSEPCTDCRGTGS 223 (392)
T ss_pred CeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEE----EEEecceEEEEecCCCCceeE
Confidence 3444444444444433 4789999999997 679999999994 344566655 99999999999
Q ss_pred Ee---CCCCcCeeEec
Q 030696 159 IM---CAECGGRGHCG 171 (173)
Q Consensus 159 ii---C~~C~G~G~v~ 171 (173)
++ |+.|+|.|++.
T Consensus 224 ~i~~~C~~C~G~g~v~ 239 (392)
T PRK14279 224 IIEDPCEECKGTGVTT 239 (392)
T ss_pred EeCCcCCCCCCCeEEE
Confidence 98 99999999874
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=1e-11 Score=110.75 Aligned_cols=74 Identities=32% Similarity=0.806 Sum_probs=57.3
Q ss_pred ceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccce
Q 030696 94 RIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGN 158 (173)
Q Consensus 94 ~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ 158 (173)
++...+.++|++++.| +.+.|..|+|+|. .+|+.|+|+|+ +...+|+++. ++|+.|.|+|+
T Consensus 125 di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~----v~~~~G~~~~~~~C~~C~G~G~ 200 (372)
T PRK14286 125 DLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQ----IRRTQGFFSVATTCPTCRGKGT 200 (372)
T ss_pred CeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEE----EEEEeceEEEEEeCCCCCceee
Confidence 3444444444444433 4789999999997 68999999999 3444577655 99999999999
Q ss_pred Ee---CCCCcCeeEec
Q 030696 159 IM---CAECGGRGHCG 171 (173)
Q Consensus 159 ii---C~~C~G~G~v~ 171 (173)
++ |+.|+|.|++.
T Consensus 201 ~~~~~C~~C~G~g~~~ 216 (372)
T PRK14286 201 VISNPCKTCGGQGLQE 216 (372)
T ss_pred EecccCCCCCCCcEEe
Confidence 98 99999999875
No 6
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.26 E-value=1.6e-11 Score=108.30 Aligned_cols=81 Identities=31% Similarity=0.720 Sum_probs=63.7
Q ss_pred cccceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCc
Q 030696 91 PEERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGG 155 (173)
Q Consensus 91 ~~~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G 155 (173)
++.++...+.++|++++.| +.+.|..|+|+|. ..|+.|+|+|+++.......|++++ ++|+.|.|
T Consensus 115 ~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 194 (354)
T TIGR02349 115 RGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGG 194 (354)
T ss_pred CCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCC
Confidence 4556777777888888766 4789999999996 6799999999964211111266655 99999999
Q ss_pred cceEe---CCCCcCeeEec
Q 030696 156 TGNIM---CAECGGRGHCG 171 (173)
Q Consensus 156 ~G~ii---C~~C~G~G~v~ 171 (173)
+|+++ |+.|+|+|++.
T Consensus 195 ~G~~~~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 195 EGKIIKEPCSTCKGKGRVK 213 (354)
T ss_pred cceecCCCCCCCCCCcEec
Confidence 99998 99999999875
No 7
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=1.3e-11 Score=110.41 Aligned_cols=78 Identities=32% Similarity=0.690 Sum_probs=58.5
Q ss_pred cceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEee-cCeEEE-EeCCCCCcc
Q 030696 93 ERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILES-QGIIVK-VRCLGCGGT 156 (173)
Q Consensus 93 ~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~-~G~~~~-~~C~~C~G~ 156 (173)
.++...+.++|++.+.| +.+.|+.|+|+|. .+|+.|+|+|+++. +++. .|++++ ++|+.|+|+
T Consensus 113 ~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~-~~~~~~g~~~~~~~C~~C~G~ 191 (378)
T PRK14278 113 SDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQT-VQRSFLGQVMTSRPCPTCRGV 191 (378)
T ss_pred CCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEE-EEeccceeEEEEEECCCCCcc
Confidence 34444455555555544 4789999999997 67999999999542 2222 266655 899999999
Q ss_pred ceEe---CCCCcCeeEec
Q 030696 157 GNIM---CAECGGRGHCG 171 (173)
Q Consensus 157 G~ii---C~~C~G~G~v~ 171 (173)
|+++ |+.|+|+|++.
T Consensus 192 G~~~~~~C~~C~G~g~v~ 209 (378)
T PRK14278 192 GEVIPDPCHECAGDGRVR 209 (378)
T ss_pred ceeeCCCCCCCCCceeEe
Confidence 9998 99999999874
No 8
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.6e-11 Score=109.53 Aligned_cols=58 Identities=38% Similarity=0.880 Sum_probs=50.1
Q ss_pred CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEec
Q 030696 110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~ 171 (173)
+.+.|..|+|+|. ..|+.|+|+|+ +...+|++++ ++|+.|.|+|+++ |+.|+|.|++.
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~----v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 210 (373)
T PRK14301 143 KNVTCDDCGGSGAAPGTSPETCRHCGGSGQ----VRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQ 210 (373)
T ss_pred ecccCCCCCCcccCCCCCCcccCCccCeeE----EEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceec
Confidence 3789999999997 67999999999 4444577665 9999999999998 99999999874
No 9
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.5e-11 Score=109.43 Aligned_cols=76 Identities=30% Similarity=0.740 Sum_probs=60.1
Q ss_pred ccceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCcc
Q 030696 92 EERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGT 156 (173)
Q Consensus 92 ~~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~ 156 (173)
+.++...+.++|++.+.| +.+.|..|+|+|. ..|+.|+|+|+ +....|+++. ++|+.|.|+
T Consensus 119 g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~----~~~~~G~~~~~~~C~~C~G~ 194 (365)
T PRK14285 119 GQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGR----VMQGGGFFRVTTTCPKCYGN 194 (365)
T ss_pred CCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCcee----EEecCceeEEeeecCCCCCc
Confidence 345555555666665544 4789999999996 67999999999 4445577755 999999999
Q ss_pred ceEe---CCCCcCeeEec
Q 030696 157 GNIM---CAECGGRGHCG 171 (173)
Q Consensus 157 G~ii---C~~C~G~G~v~ 171 (173)
|+++ |+.|+|+|++.
T Consensus 195 G~~~~~~C~~C~G~g~v~ 212 (365)
T PRK14285 195 GKIISNPCKSCKGKGSLK 212 (365)
T ss_pred ccccCCCCCCCCCCCEEe
Confidence 9998 99999999875
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=2e-11 Score=109.18 Aligned_cols=76 Identities=33% Similarity=0.793 Sum_probs=57.2
Q ss_pred ceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEee--cCeEEE-EeCCCCCcc
Q 030696 94 RIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILES--QGIIVK-VRCLGCGGT 156 (173)
Q Consensus 94 ~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~--~G~~~~-~~C~~C~G~ 156 (173)
++...+.++|++.+.| +.+.|..|+|+|. .+|+.|+|+|+++ ..+. .|++++ ++|+.|.|+
T Consensus 121 di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~--~~~~~~~G~~~~~~~C~~C~G~ 198 (380)
T PRK14276 121 DLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVIT--VDTQTPLGMMRRQVTCDVCHGT 198 (380)
T ss_pred CEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEE--EEEecCCceEEEEEECCCCCCC
Confidence 4444444444444443 4789999999997 6799999999954 2222 266665 999999999
Q ss_pred ceEe---CCCCcCeeEec
Q 030696 157 GNIM---CAECGGRGHCG 171 (173)
Q Consensus 157 G~ii---C~~C~G~G~v~ 171 (173)
|+++ |+.|+|.|++.
T Consensus 199 G~~~~~~C~~C~G~g~~~ 216 (380)
T PRK14276 199 GKEIKEPCQTCHGTGHEK 216 (380)
T ss_pred CccccCCCCCCCCceEEE
Confidence 9998 99999999874
No 11
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2.2e-11 Score=109.04 Aligned_cols=79 Identities=34% Similarity=0.724 Sum_probs=58.2
Q ss_pred cceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccc
Q 030696 93 ERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTG 157 (173)
Q Consensus 93 ~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G 157 (173)
.++...+.++|++.+.| +.+.|..|+|+|. .+|+.|+|+|+++...+...|++++ ++|+.|.|+|
T Consensus 129 ~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G 208 (386)
T PRK14277 129 ADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEG 208 (386)
T ss_pred CCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcce
Confidence 34444444455554444 4789999999997 6799999999954211111276666 9999999999
Q ss_pred eEe---CCCCcCeeEec
Q 030696 158 NIM---CAECGGRGHCG 171 (173)
Q Consensus 158 ~ii---C~~C~G~G~v~ 171 (173)
+++ |+.|+|+|++.
T Consensus 209 ~~~~~~C~~C~G~g~v~ 225 (386)
T PRK14277 209 KIITDPCNKCGGTGRIR 225 (386)
T ss_pred eeccCCCCCCCCCcEEe
Confidence 998 99999999874
No 12
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2.4e-11 Score=108.50 Aligned_cols=77 Identities=31% Similarity=0.770 Sum_probs=58.2
Q ss_pred cceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeec--CeEEE-EeCCCCCc
Q 030696 93 ERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQ--GIIVK-VRCLGCGG 155 (173)
Q Consensus 93 ~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~--G~~~~-~~C~~C~G 155 (173)
.++...+.++|++.+.| +.+.|+.|+|+|. ..|+.|+|+|++. ..+.. |++++ ++|+.|.|
T Consensus 117 ~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~--~~~~~~~g~~~~~~~C~~C~G 194 (376)
T PRK14280 117 ADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVS--VEQNTPFGRVVNRQTCPHCNG 194 (376)
T ss_pred cCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEE--EEeecCCceEEEEEEcCCCCC
Confidence 34444555555555544 3789999999996 6799999999954 22222 66655 89999999
Q ss_pred cceEe---CCCCcCeeEec
Q 030696 156 TGNIM---CAECGGRGHCG 171 (173)
Q Consensus 156 ~G~ii---C~~C~G~G~v~ 171 (173)
+|+++ |+.|+|+|++.
T Consensus 195 ~G~~~~~~C~~C~G~g~v~ 213 (376)
T PRK14280 195 TGQEIKEKCPTCHGKGKVR 213 (376)
T ss_pred CCceecCCCCCCCCceEEE
Confidence 99998 99999999874
No 13
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2.4e-11 Score=108.34 Aligned_cols=75 Identities=29% Similarity=0.717 Sum_probs=58.5
Q ss_pred cceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccc
Q 030696 93 ERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTG 157 (173)
Q Consensus 93 ~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G 157 (173)
.++...+.++|++.+.| +.+.|..|+|+|. .+|+.|+|+|++ ....|+++. .+|+.|.|+|
T Consensus 119 ~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~----~~~~g~~~~~~~C~~C~G~G 194 (372)
T PRK14300 119 SDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGAT----RMQQGFFTIEQACHKCQGNG 194 (372)
T ss_pred CCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEE----EEeeceEEEEEeCCCCCccc
Confidence 34444455555555544 4789999999996 689999999994 344577665 8999999999
Q ss_pred eEe---CCCCcCeeEec
Q 030696 158 NIM---CAECGGRGHCG 171 (173)
Q Consensus 158 ~ii---C~~C~G~G~v~ 171 (173)
+++ |++|+|+|++.
T Consensus 195 ~~~~~~C~~C~G~g~v~ 211 (372)
T PRK14300 195 QIIKNPCKKCHGMGRYH 211 (372)
T ss_pred eEeCCCCCCCCCceEEE
Confidence 998 99999999974
No 14
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.9e-11 Score=109.59 Aligned_cols=58 Identities=34% Similarity=0.908 Sum_probs=49.8
Q ss_pred CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEec
Q 030696 110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~ 171 (173)
+.+.|+.|+|+|. ..|+.|+|+|++ ...+|+++. ++|+.|+|+|+++ |+.|+|.|++.
T Consensus 157 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v----~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 224 (391)
T PRK14284 157 GYKSCDACSGSGANSSQGIKVCDRCKGSGQV----VQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIK 224 (391)
T ss_pred eeccCCCCcccccCCCCCCeecCccCCeeEE----EEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceec
Confidence 3789999999997 679999999994 344477655 9999999999988 99999999874
No 15
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=2.5e-11 Score=107.89 Aligned_cols=75 Identities=32% Similarity=0.722 Sum_probs=57.6
Q ss_pred cceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccc
Q 030696 93 ERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTG 157 (173)
Q Consensus 93 ~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G 157 (173)
.++...+.++|++++.| +.+.|+.|+|+|. ..|+.|+|+|++ ...+|+++. .+|+.|.|+|
T Consensus 116 ~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~----~~~~g~~~~~~~C~~C~G~G 191 (371)
T PRK10767 116 ADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQV----RMQQGFFTVQQTCPTCHGRG 191 (371)
T ss_pred CCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEE----EEeeceEEEEEeCCCCCCce
Confidence 34444444555555444 4789999999997 589999999994 334477655 8999999999
Q ss_pred eEe---CCCCcCeeEec
Q 030696 158 NIM---CAECGGRGHCG 171 (173)
Q Consensus 158 ~ii---C~~C~G~G~v~ 171 (173)
+.+ |+.|+|+|++.
T Consensus 192 ~~~~~~C~~C~G~g~v~ 208 (371)
T PRK10767 192 KIIKDPCKKCHGQGRVE 208 (371)
T ss_pred eECCCCCCCCCCCceEe
Confidence 997 99999999874
No 16
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=2.4e-11 Score=108.50 Aligned_cols=77 Identities=29% Similarity=0.729 Sum_probs=57.3
Q ss_pred cceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeE--EE-EeCCCCCc
Q 030696 93 ERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGII--VK-VRCLGCGG 155 (173)
Q Consensus 93 ~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~--~~-~~C~~C~G 155 (173)
.++...+.++|++++.| +.+.|..|+|+|. .+|+.|+|+|+++ ..++.|++ +. ++|+.|.|
T Consensus 123 ~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~--~~~~~g~~~~q~~~~C~~C~G 200 (372)
T PRK14296 123 QSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVL--VQKNMGFFQFQQSAKCNVCNG 200 (372)
T ss_pred CCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEE--EEEeccceEEEEEecCCCcCC
Confidence 34444455555555444 3789999999997 6799999999965 33334543 33 89999999
Q ss_pred cceEe---CCCCcCeeEec
Q 030696 156 TGNIM---CAECGGRGHCG 171 (173)
Q Consensus 156 ~G~ii---C~~C~G~G~v~ 171 (173)
+|+++ |+.|+|.|++.
T Consensus 201 ~G~~~~~~C~~C~G~g~v~ 219 (372)
T PRK14296 201 AGKIIKNKCKNCKGKGKYL 219 (372)
T ss_pred cceeecccccCCCCceEEE
Confidence 99998 99999999864
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=2.6e-11 Score=108.90 Aligned_cols=75 Identities=33% Similarity=0.722 Sum_probs=57.1
Q ss_pred cceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccc
Q 030696 93 ERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTG 157 (173)
Q Consensus 93 ~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G 157 (173)
.++...+.++|++++.| +.+.|..|+|+|. ..|+.|+|+|+++ ..+|.++. ++|+.|.|+|
T Consensus 140 ~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~----~~~g~~~~~~~C~~C~G~G 215 (389)
T PRK14295 140 ADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVS----RNSGGFSLSEPCPDCKGRG 215 (389)
T ss_pred CCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEE----EEecceEEEEecCCCccee
Confidence 34444455555555444 4789999999997 6799999999943 33455544 9999999999
Q ss_pred eEe---CCCCcCeeEec
Q 030696 158 NIM---CAECGGRGHCG 171 (173)
Q Consensus 158 ~ii---C~~C~G~G~v~ 171 (173)
+++ |+.|.|+|++.
T Consensus 216 ~~~~~~C~~C~G~g~~~ 232 (389)
T PRK14295 216 LIADDPCLVCKGSGRAK 232 (389)
T ss_pred EEeccCCCCCCCCceEe
Confidence 998 99999999874
No 18
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=3.1e-11 Score=108.55 Aligned_cols=62 Identities=34% Similarity=0.756 Sum_probs=49.9
Q ss_pred CCccCCCCCccCc-----ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEec
Q 030696 110 DNPRCTECKAKGA-----VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 110 ~~~~C~~C~GsG~-----~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~ 171 (173)
+.+.|..|+|+|. ..|+.|+|+|+++...+...|++++ ++|+.|.|+|+++ |+.|+|.|++.
T Consensus 162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 232 (397)
T PRK14281 162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQ 232 (397)
T ss_pred eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEe
Confidence 3789999999997 6799999999954211111266655 8999999999998 99999999875
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=3.3e-11 Score=107.17 Aligned_cols=58 Identities=34% Similarity=0.864 Sum_probs=49.7
Q ss_pred CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEec
Q 030696 110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~ 171 (173)
+.+.|..|+|+|. ..|+.|+|.|++ ....|+++. ++|+.|.|+|+.+ |+.|+|.|++.
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~----~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 210 (366)
T PRK14294 143 KLETCEECHGSGCEPGTSPTTCPQCGGSGQV----TQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVR 210 (366)
T ss_pred ecccCCCCCCccccCCCCcccCCCcCCeEEE----EEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEee
Confidence 3789999999997 579999999994 344477655 9999999999998 99999999874
No 20
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=2.9e-11 Score=107.78 Aligned_cols=57 Identities=32% Similarity=0.789 Sum_probs=49.3
Q ss_pred CccCCCCCccCc-----ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEec
Q 030696 111 NPRCTECKAKGA-----VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 111 ~~~C~~C~GsG~-----~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~ 171 (173)
.+.|..|+|+|. .+|+.|+|+|+ +...+|+++. ++|+.|.|+|+++ |+.|+|.|++.
T Consensus 140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~----~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 205 (369)
T PRK14288 140 QSVCESCDGTGAKDKALETCKQCNGQGQ----VFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYIL 205 (369)
T ss_pred eccCCCCCCcccCCCCCcCCCCCCCCcE----EEEEeceEEEEEecCCCCCCceEccccCccCCCcceEE
Confidence 678999999997 67999999998 4444577655 8999999999988 99999999874
No 21
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=4.4e-11 Score=106.76 Aligned_cols=80 Identities=34% Similarity=0.728 Sum_probs=59.2
Q ss_pred ccceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCcc
Q 030696 92 EERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGT 156 (173)
Q Consensus 92 ~~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~ 156 (173)
+.++...+.++|++.+.| +.+.|..|+|+|. .+|+.|+|+|++....+...|++++ ++|+.|.|+
T Consensus 111 g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~ 190 (371)
T PRK14287 111 GADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGT 190 (371)
T ss_pred CCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCC
Confidence 345555555556655544 3789999999996 6799999999854211111266655 999999999
Q ss_pred ceEe---CCCCcCeeEec
Q 030696 157 GNIM---CAECGGRGHCG 171 (173)
Q Consensus 157 G~ii---C~~C~G~G~v~ 171 (173)
|+++ |..|.|.|++.
T Consensus 191 G~~~~~~C~~C~G~g~v~ 208 (371)
T PRK14287 191 GKIIKQKCATCGGKGKVR 208 (371)
T ss_pred CccccccCCCCCCeeEEe
Confidence 9998 99999999874
No 22
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.16 E-value=5.1e-11 Score=82.44 Aligned_cols=54 Identities=39% Similarity=0.968 Sum_probs=39.3
Q ss_pred CCCCCccCc------ccCCCCCCceEEeeeEEeec-CeEEE-EeCCCCCccceEe----CCCCcCee
Q 030696 114 CTECKAKGA------VLCATCSGSGLYVDSILESQ-GIIVK-VRCLGCGGTGNIM----CAECGGRG 168 (173)
Q Consensus 114 C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~-G~~~~-~~C~~C~G~G~ii----C~~C~G~G 168 (173)
|+.|+|+|+ .+|+.|+|+|+++. .++.. ++++. ++|+.|+|+|+++ |+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~-~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTR-RQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEE-EEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEE-EEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 889999998 78999999999653 22222 44544 9999999999997 99999976
No 23
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=5.9e-11 Score=106.14 Aligned_cols=62 Identities=34% Similarity=0.757 Sum_probs=50.0
Q ss_pred CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEec
Q 030696 110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~ 171 (173)
+.+.|..|+|+|. ..|+.|+|+|+++...+...|+++. .+|+.|.|+|.++ |+.|+|+|++.
T Consensus 153 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 224 (386)
T PRK14289 153 KYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVY 224 (386)
T ss_pred eecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEe
Confidence 3789999999997 6799999999964211111266655 9999999999998 99999999874
No 24
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=6.9e-11 Score=105.61 Aligned_cols=78 Identities=35% Similarity=0.791 Sum_probs=58.0
Q ss_pred cceeeeeeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEee-cCeEEE-EeCCCCCcc
Q 030696 93 ERIEKPIGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILES-QGIIVK-VRCLGCGGT 156 (173)
Q Consensus 93 ~~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~-~G~~~~-~~C~~C~G~ 156 (173)
.++...+.++|++.+.| +.+.|..|+|+|. .+|+.|+|+|++.. .++. .|++++ ++|+.|.|+
T Consensus 122 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~-~~~~~~G~~~~~~~C~~C~G~ 200 (380)
T PRK14297 122 ADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRV-QRNTPLGSFVSTTTCDKCGGS 200 (380)
T ss_pred CCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEE-EEEcCCceeEEEEeCCCCCCC
Confidence 34455555555555544 4789999999997 67999999998542 2222 266655 999999999
Q ss_pred ceEe---CCCCcCeeEec
Q 030696 157 GNIM---CAECGGRGHCG 171 (173)
Q Consensus 157 G~ii---C~~C~G~G~v~ 171 (173)
|.++ |..|+|.|++.
T Consensus 201 G~~~~~~C~~C~G~g~v~ 218 (380)
T PRK14297 201 GKVIEDPCNKCHGKGKVR 218 (380)
T ss_pred ceEcCCCCCCCCCCeEEE
Confidence 9998 99999999763
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=8.7e-11 Score=105.14 Aligned_cols=58 Identities=34% Similarity=0.800 Sum_probs=48.6
Q ss_pred CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe--CCCCcCeeEec
Q 030696 110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM--CAECGGRGHCG 171 (173)
Q Consensus 110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii--C~~C~G~G~v~ 171 (173)
+.+.|..|+|+|. ..|+.|+|+|++ ...+|++++ ++|+.|.|+|.+. |+.|+|.|++.
T Consensus 155 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~----~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~ 221 (382)
T PRK14291 155 RYVPCEACGGTGYDPGSGEKVCPTCGGSGEI----YQRGGFFRISQTCPTCGGEGVLREPCSKCNGRGLVI 221 (382)
T ss_pred eeccCCCCccccCCCCCCCccCCCCCCceEE----EEecceEEEEecCCCCCCceEEccCCCCCCCCceEE
Confidence 4789999999996 679999999994 344566655 9999999999655 99999999875
No 26
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.13 E-value=1.2e-10 Score=88.97 Aligned_cols=57 Identities=32% Similarity=0.743 Sum_probs=48.8
Q ss_pred CccCCCCCccCcccCCCCCCceEEeeeEEeec-CeEE-EEeCCCCCccceEeCCCCcCeeEec
Q 030696 111 NPRCTECKAKGAVLCATCSGSGLYVDSILESQ-GIIV-KVRCLGCGGTGNIMCAECGGRGHCG 171 (173)
Q Consensus 111 ~~~C~~C~GsG~~~C~~C~GsG~~v~~i~~~~-G~~~-~~~C~~C~G~G~iiC~~C~G~G~v~ 171 (173)
.+.|..|+|+|..+|+.|+|+|++. ... +.++ +++|+.|+|+|+..|+.|+|+|+++
T Consensus 41 ~v~C~~C~GsG~~~C~~C~G~G~v~----~~~~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~ 99 (111)
T PLN03165 41 TQPCFPCSGTGAQVCRFCVGSGNVT----VELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQP 99 (111)
T ss_pred CCCCCCCCCCCCcCCCCCcCcCeEE----EEeCCcEEEEEECCCCCCcceeeCCCCCCCEEEe
Confidence 7899999999999999999999943 333 4333 3899999999999999999999875
No 27
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.12 E-value=1.2e-10 Score=105.81 Aligned_cols=60 Identities=32% Similarity=0.845 Sum_probs=48.5
Q ss_pred CCccCCCCCccCc-----ccCCCCCCceEEeeeEEeecCeE--EE-EeCCCCCccceEe-----CCCCcCeeEec
Q 030696 110 DNPRCTECKAKGA-----VLCATCSGSGLYVDSILESQGII--VK-VRCLGCGGTGNIM-----CAECGGRGHCG 171 (173)
Q Consensus 110 ~~~~C~~C~GsG~-----~~C~~C~GsG~~v~~i~~~~G~~--~~-~~C~~C~G~G~ii-----C~~C~G~G~v~ 171 (173)
+.+.|..|+|+|. .+|+.|+|+|+++ .....|.+ +. ++|+.|.|+|+++ |+.|+|.|++.
T Consensus 149 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~--~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 149 KDVICANCEGHGGPKDAFVDCKLCNGQGIRV--QIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKK 221 (421)
T ss_pred ccccccccCCCCCCCCCCccCCCCCCCCeEE--EEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceee
Confidence 4789999999997 6899999999854 22333533 22 8999999999986 99999999875
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=1.4e-10 Score=103.40 Aligned_cols=61 Identities=33% Similarity=0.824 Sum_probs=49.8
Q ss_pred CCccCCCCCccCc------ccCCCCCCceEEeeeEEee-cCeEEE-EeCCCCCccceEe---CCCCcCeeEec
Q 030696 110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILES-QGIIVK-VRCLGCGGTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~-~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~ 171 (173)
+.++|..|+|+|. ..|+.|+|+|++.. .++. .|++++ .+|+.|.|+|+++ |+.|.|+|++.
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~-~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 213 (374)
T PRK14293 142 HLETCETCRGSGAKPGTGPTTCSTCGGAGQVRR-ATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQ 213 (374)
T ss_pred ccccCCCCCCcCCCCCCCCeeCCCCCCcceEEE-EEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccc
Confidence 4789999999997 57999999998542 2222 266655 9999999999997 99999999864
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=1.8e-10 Score=102.44 Aligned_cols=60 Identities=38% Similarity=0.907 Sum_probs=49.0
Q ss_pred CCccCCCCCccCc-----ccCCCCCCceEEeeeEEeecCeEEE---EeCCCCCccceEe---CCCCcCeeEec
Q 030696 110 DNPRCTECKAKGA-----VLCATCSGSGLYVDSILESQGIIVK---VRCLGCGGTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 110 ~~~~C~~C~GsG~-----~~C~~C~GsG~~v~~i~~~~G~~~~---~~C~~C~G~G~ii---C~~C~G~G~v~ 171 (173)
+.+.|+.|+|+|. ..|+.|+|+|+++ ..+..|++.+ .+|+.|.|+|+++ |+.|+|+|++.
T Consensus 148 r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~--~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 218 (365)
T PRK14290 148 RNAMCPDCSGTGAKNGKLITCPTCHGTGQQR--IVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVV 218 (365)
T ss_pred ecccCCCCccccCCCCCCccCCCCCCcCEEE--EEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEE
Confidence 4789999999997 6899999999854 2223466432 8999999999998 99999999874
No 30
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.8e-10 Score=102.84 Aligned_cols=61 Identities=30% Similarity=0.745 Sum_probs=49.2
Q ss_pred CccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEec
Q 030696 111 NPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 111 ~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~ 171 (173)
.+.|+.|+|+|. ..|+.|+|+|++........|+++. .+|+.|.|+|+.+ |..|+|+|++.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 216 (378)
T PRK14283 146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVR 216 (378)
T ss_pred eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeec
Confidence 678999999987 6799999999965211111266655 8999999999997 99999999874
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=2.1e-10 Score=102.11 Aligned_cols=78 Identities=27% Similarity=0.623 Sum_probs=57.4
Q ss_pred ceeeeeeeccchhhcC--------CCccCCCCCccCc-------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccc
Q 030696 94 RIEKPIGLSLSEKVIG--------DNPRCTECKAKGA-------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTG 157 (173)
Q Consensus 94 ~~~~~~~lsl~~~~~g--------~~~~C~~C~GsG~-------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G 157 (173)
++...+.++|++++.| +...|+.|+|+|. ..|+.|+|+|+++...+...|++++ .+|+.|.|+|
T Consensus 114 d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 193 (371)
T PRK14292 114 DLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEG 193 (371)
T ss_pred CeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccc
Confidence 3444444444444433 3788999999996 5799999999965322222377665 8999999999
Q ss_pred eEe---CCCCcCeeEec
Q 030696 158 NIM---CAECGGRGHCG 171 (173)
Q Consensus 158 ~ii---C~~C~G~G~v~ 171 (173)
+.+ |+.|.|+|++.
T Consensus 194 ~~~~~~C~~C~G~g~v~ 210 (371)
T PRK14292 194 QIITDPCTVCRGRGRTL 210 (371)
T ss_pred eecCCCCCCCCCceEEe
Confidence 998 99999999874
No 32
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=5.1e-09 Score=94.14 Aligned_cols=87 Identities=24% Similarity=0.441 Sum_probs=66.6
Q ss_pred CCCCCCCCCCcccccc--hhh-hhhhcccccccccceeeeeee--ccchhhcCCCccCCCCCccCc-------------c
Q 030696 62 CGGSESSSTGNEQRRR--SSL-ESLFRYDRPIPEERIEKPIGL--SLSEKVIGDNPRCTECKAKGA-------------V 123 (173)
Q Consensus 62 ~~~~~~~~k~d~~~~~--~~l-E~lf~~~k~i~~~~~~~~~~l--sl~~~~~g~~~~C~~C~GsG~-------------~ 123 (173)
++++++++.+.+.++. .+| |++++..+++.......+..+ +.++.... .++|++|+|+|. +
T Consensus 106 ~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~-~~tC~tC~G~G~v~~~~~~g~~~~~~ 184 (371)
T COG0484 106 RRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTD-PKTCPTCNGSGQVRTVQRTGFFSFQQ 184 (371)
T ss_pred cCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCC-CCcCCCCCCcCeEEEEEeeeEEEEEE
Confidence 3455668888776665 444 777888888888887776555 45554443 899999999996 6
Q ss_pred cCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe
Q 030696 124 LCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 124 ~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
+|++|+|+|.++ ..+|++|+|.|.+.
T Consensus 185 ~C~~C~G~G~~i-----------~~pC~~C~G~G~v~ 210 (371)
T COG0484 185 TCPTCNGTGKII-----------KDPCGKCKGKGRVK 210 (371)
T ss_pred ECCCCccceeEC-----------CCCCCCCCCCCeEe
Confidence 899999999954 47999999999864
No 33
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=9.8e-09 Score=91.33 Aligned_cols=88 Identities=26% Similarity=0.581 Sum_probs=65.8
Q ss_pred CCCcccccchhhhhhhcccccccccceeeeeeeccchhhcCCCccCCCCCccCc-----ccCCCCCCceEEeeeEEeec-
Q 030696 69 STGNEQRRRSSLESLFRYDRPIPEERIEKPIGLSLSEKVIGDNPRCTECKAKGA-----VLCATCSGSGLYVDSILESQ- 142 (173)
Q Consensus 69 ~k~d~~~~~~~lE~lf~~~k~i~~~~~~~~~~lsl~~~~~g~~~~C~~C~GsG~-----~~C~~C~GsG~~v~~i~~~~- 142 (173)
-++..|+++++||++|.- +. ..+. +.++.+|+.|+|.|. ..|..|.|+|..++ .+..
T Consensus 100 g~~~~~~~~~~Le~~y~G-~s---------~kl~-----l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~--~~~~g 162 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMG-KS---------KKLF-----LSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTR--TRQMG 162 (337)
T ss_pred CCCceEEEEEEHHHhhcC-Cc---------ccee-----cccCccCCcCCCCCCCCCCCCCCCCCCCCCceeE--EEecc
Confidence 455668888888888841 11 2222 234899999999998 56999999999653 3333
Q ss_pred -CeEEE--EeCCCCCccceE-----eCCCCcCeeEeccC
Q 030696 143 -GIIVK--VRCLGCGGTGNI-----MCAECGGRGHCGPK 173 (173)
Q Consensus 143 -G~~~~--~~C~~C~G~G~i-----iC~~C~G~G~v~~~ 173 (173)
|++++ .+|..|+|+|.. .|+.|.|.+++..|
T Consensus 163 Pg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~k 201 (337)
T KOG0712|consen 163 PGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREK 201 (337)
T ss_pred ccccccceeEeccCCCccccccccccCcccccchhhhhh
Confidence 55554 899999999998 39999999988654
No 34
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.93 E-value=8.6e-06 Score=73.47 Aligned_cols=75 Identities=17% Similarity=0.317 Sum_probs=50.1
Q ss_pred cccchhhhhhh-cccccccccceeeeeeec--cchhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeeeEE
Q 030696 74 QRRRSSLESLF-RYDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDSIL 139 (173)
Q Consensus 74 ~~~~~~lE~lf-~~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i~ 139 (173)
.++.++||++| +..+.+...+...+..+. ...... ...+|+.|+|+|. .+|+.|+|+|+++
T Consensus 151 ~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i---- 225 (392)
T PRK14279 151 TETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGT-SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII---- 225 (392)
T ss_pred EEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCC-CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe----
Confidence 55667887776 344555444444433332 222111 3688999999997 5799999999943
Q ss_pred eecCeEEEEeCCCCCccceEe
Q 030696 140 ESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 140 ~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 226 -------~~~C~~C~G~g~v~ 239 (392)
T PRK14279 226 -------EDPCEECKGTGVTT 239 (392)
T ss_pred -------CCcCCCCCCCeEEE
Confidence 36899999999764
No 35
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.91 E-value=6.5e-06 Score=78.05 Aligned_cols=59 Identities=32% Similarity=0.794 Sum_probs=44.5
Q ss_pred CccCCCCCccCc-----ccCCCCCCceEEeeeEEe---e----c---CeEEE-EeCCCCCccceEe----CCCCcCeeEe
Q 030696 111 NPRCTECKAKGA-----VLCATCSGSGLYVDSILE---S----Q---GIIVK-VRCLGCGGTGNIM----CAECGGRGHC 170 (173)
Q Consensus 111 ~~~C~~C~GsG~-----~~C~~C~GsG~~v~~i~~---~----~---G~~~~-~~C~~C~G~G~ii----C~~C~G~G~v 170 (173)
...|+.|+|+|. ..|+.|+|+|+.- .... . . ++... .+|+.|+|+|.+. |+.|.|+|.+
T Consensus 2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~~-~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 2 IKKCPECGGKGKIVVGEEECPVCHGTGFSD-DFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred CccccccCCCceEeeeeeeccccccccccc-ccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence 357999999998 6799999999952 2221 0 0 22222 6999999999987 9999999875
No 36
>PRK14288 chaperone protein DnaJ; Provisional
Probab=97.89 E-value=1.4e-05 Score=71.52 Aligned_cols=74 Identities=20% Similarity=0.424 Sum_probs=49.2
Q ss_pred cccchhhhhhh-cccccccccceeeeeee--ccchhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeeeEE
Q 030696 74 QRRRSSLESLF-RYDRPIPEERIEKPIGL--SLSEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDSIL 139 (173)
Q Consensus 74 ~~~~~~lE~lf-~~~k~i~~~~~~~~~~l--sl~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i~ 139 (173)
.++..+||++| +..+.+...+...+..+ +.... +....|..|+|.|. .+|+.|+|+|.++
T Consensus 118 ~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~---- 191 (369)
T PRK14288 118 QTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKD--KALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII---- 191 (369)
T ss_pred EeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCC--CCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc----
Confidence 55678887766 33444444433333222 22221 23678999999996 4699999999943
Q ss_pred eecCeEEEEeCCCCCccceEe
Q 030696 140 ESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 140 ~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 192 -------~~~C~~C~G~g~v~ 205 (369)
T PRK14288 192 -------KTPCQACKGKTYIL 205 (369)
T ss_pred -------cccCccCCCcceEE
Confidence 36899999998763
No 37
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.85 E-value=1.6e-05 Score=71.28 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=50.2
Q ss_pred ccccchhhhhhh-cccccccccceeeeeeeccchhhc-CCCccCCCCCccCc---------------ccCCCCCCceEEe
Q 030696 73 EQRRRSSLESLF-RYDRPIPEERIEKPIGLSLSEKVI-GDNPRCTECKAKGA---------------VLCATCSGSGLYV 135 (173)
Q Consensus 73 ~~~~~~~lE~lf-~~~k~i~~~~~~~~~~lsl~~~~~-g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v 135 (173)
..++.++||++| +..+.+...+...+..+...-... ....+|+.|+|+|. .+|+.|+|+|.++
T Consensus 126 ~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~ 205 (372)
T PRK14296 126 SLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII 205 (372)
T ss_pred EEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee
Confidence 356677887666 444555554444443332221111 13678999999996 3799999999943
Q ss_pred eeEEeecCeEEEEeCCCCCccceE
Q 030696 136 DSILESQGIIVKVRCLGCGGTGNI 159 (173)
Q Consensus 136 ~~i~~~~G~~~~~~C~~C~G~G~i 159 (173)
..+|+.|.|.|.+
T Consensus 206 -----------~~~C~~C~G~g~v 218 (372)
T PRK14296 206 -----------KNKCKNCKGKGKY 218 (372)
T ss_pred -----------cccccCCCCceEE
Confidence 3689999999965
No 38
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=8.6e-06 Score=72.65 Aligned_cols=22 Identities=45% Similarity=1.053 Sum_probs=19.2
Q ss_pred CccCCCCCccCcccCCCCCCce
Q 030696 111 NPRCTECKAKGAVLCATCSGSG 132 (173)
Q Consensus 111 ~~~C~~C~GsG~~~C~~C~GsG 132 (173)
.+.|..|.|.|.+.|+.|+|.|
T Consensus 187 v~~ch~c~gRG~~vc~gc~g~G 208 (406)
T KOG2813|consen 187 VTFCHACLGRGAMVCHGCSGSG 208 (406)
T ss_pred hhhhhcccCCCceeccCcCCCC
Confidence 4679999999999999999988
No 39
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.82 E-value=1.5e-05 Score=71.66 Aligned_cols=76 Identities=26% Similarity=0.454 Sum_probs=49.9
Q ss_pred ccccchhhhhhh-cccccccccceeeeeeec--cchhhcCCCccCCCCCccCc---------------ccCCCCCCceEE
Q 030696 73 EQRRRSSLESLF-RYDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLY 134 (173)
Q Consensus 73 ~~~~~~~lE~lf-~~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~ 134 (173)
..++.++||++| +..+.+...+...+..+. ..+... ...+|+.|+|+|. .+|+.|+|+|..
T Consensus 118 ~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 196 (377)
T PRK14298 118 RYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGT-SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQV 196 (377)
T ss_pred EEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCC-CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcc
Confidence 356678887776 344444444444333332 222111 2578999999995 479999999994
Q ss_pred eeeEEeecCeEEEEeCCCCCccceEe
Q 030696 135 VDSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 135 v~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
+ ..+|..|.|.|.+.
T Consensus 197 ~-----------~~~C~~C~G~g~v~ 211 (377)
T PRK14298 197 I-----------ESPCPVCSGTGKVR 211 (377)
T ss_pred c-----------CCCCCCCCCccEEE
Confidence 3 36899999999764
No 40
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.81 E-value=1.6e-05 Score=71.79 Aligned_cols=76 Identities=25% Similarity=0.481 Sum_probs=50.3
Q ss_pred cccchhhhhhhc-ccccccccceeeeeeeccchhhcCCCccCCCCCccCc---------------ccCCCCCCceEEeee
Q 030696 74 QRRRSSLESLFR-YDRPIPEERIEKPIGLSLSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLYVDS 137 (173)
Q Consensus 74 ~~~~~~lE~lf~-~~k~i~~~~~~~~~~lsl~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v~~ 137 (173)
+++.++||++|. ..+.+...+...+..+.......+....|..|+|.|. .+|+.|+|.|.++
T Consensus 141 ~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-- 218 (397)
T PRK14281 141 IRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-- 218 (397)
T ss_pred EEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee--
Confidence 556788877773 3444444444433333222111224678999999995 4699999999943
Q ss_pred EEeecCeEEEEeCCCCCccceEe
Q 030696 138 ILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 138 i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 219 ---------~~~C~~C~G~g~v~ 232 (397)
T PRK14281 219 ---------KDRCPACYGEGIKQ 232 (397)
T ss_pred ---------CCCCCCCCCCccEe
Confidence 36899999999763
No 41
>PRK14286 chaperone protein DnaJ; Provisional
Probab=97.80 E-value=2e-05 Score=70.55 Aligned_cols=75 Identities=27% Similarity=0.469 Sum_probs=50.1
Q ss_pred cccchhhhhhh-cccccccccceeeeeeecc--chhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeeeEE
Q 030696 74 QRRRSSLESLF-RYDRPIPEERIEKPIGLSL--SEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDSIL 139 (173)
Q Consensus 74 ~~~~~~lE~lf-~~~k~i~~~~~~~~~~lsl--~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i~ 139 (173)
+.+..+||++| +..+.+...+...+..+.. ..... ...+|..|+|+|. .+|+.|+|+|+++
T Consensus 128 ~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~---- 202 (372)
T PRK14286 128 YNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGS-SPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI---- 202 (372)
T ss_pred EEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCC-CCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe----
Confidence 55678887776 3445554444444433322 11111 2578999999996 4799999999943
Q ss_pred eecCeEEEEeCCCCCccceEe
Q 030696 140 ESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 140 ~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 203 -------~~~C~~C~G~g~~~ 216 (372)
T PRK14286 203 -------SNPCKTCGGQGLQE 216 (372)
T ss_pred -------cccCCCCCCCcEEe
Confidence 36899999999864
No 42
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.80 E-value=1.4e-05 Score=55.23 Aligned_cols=37 Identities=32% Similarity=0.881 Sum_probs=27.7
Q ss_pred CccCCCCCccCc---------------ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccc
Q 030696 111 NPRCTECKAKGA---------------VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTG 157 (173)
Q Consensus 111 ~~~C~~C~GsG~---------------~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G 157 (173)
...|+.|+|+|. .+|+.|+|+|+++ ...+|+.|+|+|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i----------~~~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII----------EKDPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-----------TSSB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE----------CCCCCCCCCCcC
Confidence 789999999997 6899999999953 026899999986
No 43
>PRK14282 chaperone protein DnaJ; Provisional
Probab=97.79 E-value=2e-05 Score=70.38 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=49.1
Q ss_pred cccchhhhhhhc-ccccccccceeeeeeecc--chhhcCCCccCCCCCccCc---------------ccCCCCCCceEEe
Q 030696 74 QRRRSSLESLFR-YDRPIPEERIEKPIGLSL--SEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLYV 135 (173)
Q Consensus 74 ~~~~~~lE~lf~-~~k~i~~~~~~~~~~lsl--~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v 135 (173)
.++..+||++|. ..+.+...+...+..+.. ..... ...+|+.|+|+|. .+|+.|+|.|.++
T Consensus 130 ~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 208 (369)
T PRK14282 130 YEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGS-GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP 208 (369)
T ss_pred EEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCC-CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC
Confidence 566788877763 344444444333333322 22111 3678999999996 4799999999943
Q ss_pred eeEEeecCeEEEEeCCCCCccceEe
Q 030696 136 DSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 136 ~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 209 -----------~~~C~~C~G~g~v~ 222 (369)
T PRK14282 209 -----------GEYCHECGGSGRIR 222 (369)
T ss_pred -----------CCCCCCCCCceeEE
Confidence 36899999999653
No 44
>PRK14280 chaperone protein DnaJ; Provisional
Probab=97.75 E-value=2.2e-05 Score=70.31 Aligned_cols=75 Identities=20% Similarity=0.417 Sum_probs=49.6
Q ss_pred cccchhhhhhh-cccccccccceeeeeeec--cchhhcCCCccCCCCCccCc---------------ccCCCCCCceEEe
Q 030696 74 QRRRSSLESLF-RYDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLYV 135 (173)
Q Consensus 74 ~~~~~~lE~lf-~~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v 135 (173)
.++.++||++| +..+.+...+...+..+. ...... ....|..|+|+|. .+|+.|+|+|.++
T Consensus 121 ~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (376)
T PRK14280 121 YTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGT-SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI 199 (376)
T ss_pred EEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCC-CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee
Confidence 56678887776 344555444444433332 211111 2678999999985 4799999999943
Q ss_pred eeEEeecCeEEEEeCCCCCccceEe
Q 030696 136 DSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 136 ~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|+|.+.
T Consensus 200 -----------~~~C~~C~G~g~v~ 213 (376)
T PRK14280 200 -----------KEKCPTCHGKGKVR 213 (376)
T ss_pred -----------cCCCCCCCCceEEE
Confidence 36899999999763
No 45
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.75 E-value=2.4e-05 Score=70.13 Aligned_cols=75 Identities=17% Similarity=0.328 Sum_probs=48.5
Q ss_pred cccchhhhhhhc-ccccccccceeeeeeec--cchhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeeeEE
Q 030696 74 QRRRSSLESLFR-YDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDSIL 139 (173)
Q Consensus 74 ~~~~~~lE~lf~-~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i~ 139 (173)
..+.++||++|. ..+.+...+...+..+. ...... ....|+.|+|+|. ..|+.|+|+|.++
T Consensus 122 ~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~---- 196 (373)
T PRK14301 122 YNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGT-SPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI---- 196 (373)
T ss_pred EEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCC-CCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec----
Confidence 556788877763 33444443333332222 111111 2578999999996 5799999999943
Q ss_pred eecCeEEEEeCCCCCccceEe
Q 030696 140 ESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 140 ~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|+.|.|.|.+.
T Consensus 197 -------~~~C~~C~G~g~v~ 210 (373)
T PRK14301 197 -------THPCPKCKGSGIVQ 210 (373)
T ss_pred -------CCCCCCCCCCceec
Confidence 36899999999763
No 46
>PRK14290 chaperone protein DnaJ; Provisional
Probab=97.74 E-value=2.4e-05 Score=69.79 Aligned_cols=77 Identities=26% Similarity=0.449 Sum_probs=49.9
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeeeccchhhcCCCccCCCCCccCc---------------ccCCCCCCceEEee
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGLSLSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLYVD 136 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~lsl~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v~ 136 (173)
..++..+||++|. ..+.+...+...+..+...-...+....|+.|+|.|. .+|+.|.|.|+.+
T Consensus 126 ~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~- 204 (365)
T PRK14290 126 YTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP- 204 (365)
T ss_pred EEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-
Confidence 3566788877773 3344444433333222221111124678999999994 4799999999942
Q ss_pred eEEeecCeEEEEeCCCCCccceEe
Q 030696 137 SILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 137 ~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|+.|.|+|.+.
T Consensus 205 ----------~~~C~~C~G~g~v~ 218 (365)
T PRK14290 205 ----------EEKCPRCNGTGTVV 218 (365)
T ss_pred ----------cCCCCCCCCceeEE
Confidence 36899999999863
No 47
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.72 E-value=2.4e-05 Score=69.99 Aligned_cols=75 Identities=27% Similarity=0.453 Sum_probs=49.1
Q ss_pred cccchhhhhhhc-ccccccccceeeeeeec--cchhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeeeEE
Q 030696 74 QRRRSSLESLFR-YDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDSIL 139 (173)
Q Consensus 74 ~~~~~~lE~lf~-~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i~ 139 (173)
.++.++||++|. ..+.+...+...+..+. ...... ....|..|+|+|. .+|+.|+|.|.++
T Consensus 124 ~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~---- 198 (365)
T PRK14285 124 YQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGT-SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII---- 198 (365)
T ss_pred EEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCC-CCccCCCccCceeEEecCceeEEeeecCCCCCccccc----
Confidence 556778877763 34444444443333332 222111 2678999999995 4799999999943
Q ss_pred eecCeEEEEeCCCCCccceEe
Q 030696 140 ESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 140 ~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|+|.+.
T Consensus 199 -------~~~C~~C~G~g~v~ 212 (365)
T PRK14285 199 -------SNPCKSCKGKGSLK 212 (365)
T ss_pred -------CCCCCCCCCCCEEe
Confidence 36899999999653
No 48
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.72 E-value=3e-05 Score=69.91 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=51.1
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeeeccchhhcC-CCccCCCCCccCc-----------ccCCCCCCceEEeeeEE
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGLSLSEKVIG-DNPRCTECKAKGA-----------VLCATCSGSGLYVDSIL 139 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~lsl~~~~~g-~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i~ 139 (173)
.+++.++||++|. ..+.+...+...+..+...-...+ ...+|..|+|+|. .+|+.|+|+|.++
T Consensus 143 ~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~---- 218 (389)
T PRK14295 143 ESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA---- 218 (389)
T ss_pred EEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe----
Confidence 3566788877763 445555444444433322211111 2578999999996 5899999999943
Q ss_pred eecCeEEEEeCCCCCccceEe
Q 030696 140 ESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 140 ~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 219 -------~~~C~~C~G~g~~~ 232 (389)
T PRK14295 219 -------DDPCLVCKGSGRAK 232 (389)
T ss_pred -------ccCCCCCCCCceEe
Confidence 36899999999763
No 49
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.71 E-value=3.7e-05 Score=70.26 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=50.6
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeeeccchhhcCCCccCCCCCccCc---------------ccCCCCCCceEEee
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGLSLSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLYVD 136 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~lsl~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v~ 136 (173)
.+.+..+||.+|. ..+.+...+...+..+...-...+...+|..|+|+|. .+|+.|+|+|.++.
T Consensus 127 ~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~ 206 (421)
T PTZ00037 127 VSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP 206 (421)
T ss_pred EEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence 3566788877774 3344444443333333222212224678999999994 37999999999531
Q ss_pred eEEeecCeEEEEeCCCCCccceEe
Q 030696 137 SILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 137 ~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
...+|..|.|.|.+.
T Consensus 207 ---------~~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 207 ---------ESKKCKNCSGKGVKK 221 (421)
T ss_pred ---------ccccCCcCCCcceee
Confidence 126899999999764
No 50
>PRK14276 chaperone protein DnaJ; Provisional
Probab=97.71 E-value=2.3e-05 Score=70.30 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=49.3
Q ss_pred cccchhhhhhh-cccccccccceeeeeeec--cchhhcCCCccCCCCCccCc---------------ccCCCCCCceEEe
Q 030696 74 QRRRSSLESLF-RYDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLYV 135 (173)
Q Consensus 74 ~~~~~~lE~lf-~~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v 135 (173)
..+.++||++| +..+.+...+...+..+. ...... ...+|+.|+|+|. .+|+.|+|+|.++
T Consensus 124 ~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 202 (380)
T PRK14276 124 YRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGT-SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI 202 (380)
T ss_pred EEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCC-CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence 56678887776 334445444444333332 222111 2678999999986 4699999999943
Q ss_pred eeEEeecCeEEEEeCCCCCccceEe
Q 030696 136 DSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 136 ~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 203 -----------~~~C~~C~G~g~~~ 216 (380)
T PRK14276 203 -----------KEPCQTCHGTGHEK 216 (380)
T ss_pred -----------cCCCCCCCCceEEE
Confidence 36899999999753
No 51
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.3e-05 Score=71.54 Aligned_cols=46 Identities=33% Similarity=0.930 Sum_probs=34.4
Q ss_pred CccCCCCCccCc--------ccCCCCCC-----------------ceEEeeeEEeecCeEEEEeCCCCCccceEeCCCCc
Q 030696 111 NPRCTECKAKGA--------VLCATCSG-----------------SGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECG 165 (173)
Q Consensus 111 ~~~C~~C~GsG~--------~~C~~C~G-----------------sG~~v~~i~~~~G~~~~~~C~~C~G~G~iiC~~C~ 165 (173)
...|+.|+|.|. +.|++|-| +|. .+|++|+|+|++.|.+|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~--------------~~C~tC~grG~k~C~TC~ 263 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI--------------KECHTCKGRGKKPCTTCS 263 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc--------------ccCCcccCCCCccccccc
Confidence 678999999883 44555544 444 578888888888899998
Q ss_pred CeeEe
Q 030696 166 GRGHC 170 (173)
Q Consensus 166 G~G~v 170 (173)
|.|.+
T Consensus 264 gtgsl 268 (406)
T KOG2813|consen 264 GTGSL 268 (406)
T ss_pred Cccce
Confidence 88864
No 52
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.71 E-value=2.4e-05 Score=70.28 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=49.9
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeee--ccchhhcCCCccCCCCCccCc---------------ccCCCCCCceEE
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGL--SLSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLY 134 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~l--sl~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~ 134 (173)
.+.+.++||++|. ..+.+...+...+..+ +...... ...+|+.|+|+|. .+|+.|+|.|.+
T Consensus 116 ~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 194 (378)
T PRK14278 116 LLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDS-KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEV 194 (378)
T ss_pred EEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCC-CceecCCccCceEEEEEEeccceeEEEEEECCCCCcccee
Confidence 3566788877763 3444444443333322 2222221 2678999999995 479999999994
Q ss_pred eeeEEeecCeEEEEeCCCCCccceEe
Q 030696 135 VDSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 135 v~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
+ ..+|+.|.|.|.+.
T Consensus 195 ~-----------~~~C~~C~G~g~v~ 209 (378)
T PRK14278 195 I-----------PDPCHECAGDGRVR 209 (378)
T ss_pred e-----------CCCCCCCCCceeEe
Confidence 3 36799999999763
No 53
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.70 E-value=2.2e-05 Score=70.74 Aligned_cols=75 Identities=21% Similarity=0.389 Sum_probs=49.8
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeee--ccchhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeeeE
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGL--SLSEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDSI 138 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~l--sl~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i 138 (173)
...+..+||++|. ..+.+...+...+..+ +...... ...+|+.|+|+|. .+|+.|+|.|.++
T Consensus 135 ~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~--- 210 (391)
T PRK14284 135 KVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQ-GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI--- 210 (391)
T ss_pred EEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCC-CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc---
Confidence 3556788877763 3444444444333333 2222222 2678999999997 5799999999943
Q ss_pred EeecCeEEEEeCCCCCccceE
Q 030696 139 LESQGIIVKVRCLGCGGTGNI 159 (173)
Q Consensus 139 ~~~~G~~~~~~C~~C~G~G~i 159 (173)
..+|+.|.|.|.+
T Consensus 211 --------~~~C~~C~G~g~v 223 (391)
T PRK14284 211 --------TDPCSVCRGQGRI 223 (391)
T ss_pred --------CCcCCCCCCccee
Confidence 3689999999976
No 54
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.70 E-value=2.7e-05 Score=69.69 Aligned_cols=75 Identities=28% Similarity=0.412 Sum_probs=49.4
Q ss_pred cccchhhhhhh-cccccccccceeeeeeec--cchhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeeeEE
Q 030696 74 QRRRSSLESLF-RYDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDSIL 139 (173)
Q Consensus 74 ~~~~~~lE~lf-~~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i~ 139 (173)
+.+..+||++| +..+.+...+...+..+. ...... ...+|+.|+|+|. .+|+.|+|.|+++
T Consensus 123 ~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~---- 197 (372)
T PRK14300 123 YNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGE-TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII---- 197 (372)
T ss_pred EEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCC-CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe----
Confidence 55567786666 344555544444433332 222111 2678999999996 4799999999943
Q ss_pred eecCeEEEEeCCCCCccceEe
Q 030696 140 ESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 140 ~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 198 -------~~~C~~C~G~g~v~ 211 (372)
T PRK14300 198 -------KNPCKKCHGMGRYH 211 (372)
T ss_pred -------CCCCCCCCCceEEE
Confidence 36899999999863
No 55
>PRK14294 chaperone protein DnaJ; Provisional
Probab=97.68 E-value=3.3e-05 Score=68.98 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=48.5
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeeecc--chhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeeeE
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGLSL--SEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDSI 138 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~lsl--~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i 138 (173)
..++..+||++|. ..+.+...+...+..+.. ..... ...+|+.|+|.|. .+|+.|+|.|+.+
T Consensus 121 ~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~--- 196 (366)
T PRK14294 121 RYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGT-SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI--- 196 (366)
T ss_pred eEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCC-CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec---
Confidence 3556788877763 334444333333322211 11111 2578999999996 4799999999943
Q ss_pred EeecCeEEEEeCCCCCccceEe
Q 030696 139 LESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 139 ~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 197 --------~~~C~~C~G~g~v~ 210 (366)
T PRK14294 197 --------VSPCKTCHGQGRVR 210 (366)
T ss_pred --------CcCCCCCCCceEee
Confidence 36899999999763
No 56
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.68 E-value=3.5e-05 Score=69.11 Aligned_cols=75 Identities=23% Similarity=0.433 Sum_probs=49.1
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeeec--cchhhcCCCccCCCCCccCc---------------ccCCCCCCceEE
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLY 134 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~ 134 (173)
.+++.++||++|. ..+.+...+...+..+. ...... ...+|+.|+|+|. .+|+.|+|.|.+
T Consensus 125 ~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 203 (380)
T PRK14297 125 EYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGT-SPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV 203 (380)
T ss_pred EEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCC-cCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE
Confidence 3666788877763 34444444444333332 222122 2678999999985 479999999994
Q ss_pred eeeEEeecCeEEEEeCCCCCccceE
Q 030696 135 VDSILESQGIIVKVRCLGCGGTGNI 159 (173)
Q Consensus 135 v~~i~~~~G~~~~~~C~~C~G~G~i 159 (173)
+ ..+|..|.|.|.+
T Consensus 204 ~-----------~~~C~~C~G~g~v 217 (380)
T PRK14297 204 I-----------EDPCNKCHGKGKV 217 (380)
T ss_pred c-----------CCCCCCCCCCeEE
Confidence 3 3689999999954
No 57
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.67 E-value=4.1e-05 Score=68.32 Aligned_cols=77 Identities=25% Similarity=0.422 Sum_probs=49.2
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeeeccchhhcC-CCccCCCCCccCc-----------ccCCCCCCceEEeeeEE
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGLSLSEKVIG-DNPRCTECKAKGA-----------VLCATCSGSGLYVDSIL 139 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~lsl~~~~~g-~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i~ 139 (173)
..++.++||++|. ..+.+...+...+..+...-...+ ....|..|+|+|. .+|+.|+|.|.++
T Consensus 119 ~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~---- 194 (371)
T PRK10767 119 RYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII---- 194 (371)
T ss_pred EEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC----
Confidence 3566788877774 334444444333322221111111 2568999999996 3699999999943
Q ss_pred eecCeEEEEeCCCCCccceEe
Q 030696 140 ESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 140 ~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|+|.+.
T Consensus 195 -------~~~C~~C~G~g~v~ 208 (371)
T PRK10767 195 -------KDPCKKCHGQGRVE 208 (371)
T ss_pred -------CCCCCCCCCCceEe
Confidence 36899999999764
No 58
>PRK14277 chaperone protein DnaJ; Provisional
Probab=97.65 E-value=4e-05 Score=68.91 Aligned_cols=77 Identities=27% Similarity=0.417 Sum_probs=49.8
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeeeccchhhc-CCCccCCCCCccCc---------------ccCCCCCCceEEe
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGLSLSEKVI-GDNPRCTECKAKGA---------------VLCATCSGSGLYV 135 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~lsl~~~~~-g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v 135 (173)
.+.+.++||++|. ..+.+...+...+..+...-... ....+|..|+|.|. .+|+.|+|+|+.+
T Consensus 132 ~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 211 (386)
T PRK14277 132 RYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII 211 (386)
T ss_pred EEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec
Confidence 3566788888873 34444444433333232111111 12678999999986 4699999999943
Q ss_pred eeEEeecCeEEEEeCCCCCccceEe
Q 030696 136 DSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 136 ~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 212 -----------~~~C~~C~G~g~v~ 225 (386)
T PRK14277 212 -----------TDPCNKCGGTGRIR 225 (386)
T ss_pred -----------cCCCCCCCCCcEEe
Confidence 36899999999763
No 59
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.57 E-value=5.9e-05 Score=66.78 Aligned_cols=76 Identities=24% Similarity=0.423 Sum_probs=48.9
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeeec--cchhhcCCCccCCCCCccCc---------------ccCCCCCCceEE
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLY 134 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~ 134 (173)
.+.+.++||++|. ..+.+...+...+..+. ...... ....|..|+|+|. .+|+.|.|.|++
T Consensus 120 ~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 198 (354)
T TIGR02349 120 RYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGT-DPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKI 198 (354)
T ss_pred EEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCC-CCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCccee
Confidence 3666788988874 23333333333332221 111111 2678999999985 479999999994
Q ss_pred eeeEEeecCeEEEEeCCCCCccceEe
Q 030696 135 VDSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 135 v~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
+ ..+|..|.|.|.+.
T Consensus 199 ~-----------~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 199 I-----------KEPCSTCKGKGRVK 213 (354)
T ss_pred c-----------CCCCCCCCCCcEec
Confidence 3 36799999999764
No 60
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.56 E-value=5.1e-05 Score=67.97 Aligned_cols=75 Identities=21% Similarity=0.438 Sum_probs=49.0
Q ss_pred cccchhhhhhh-cccccccccceeeeeeec--cchhhcCCCccCCCCCccCc---------------ccCCCCCCceEEe
Q 030696 74 QRRRSSLESLF-RYDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLYV 135 (173)
Q Consensus 74 ~~~~~~lE~lf-~~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v 135 (173)
+++.++||++| +..+.+...+...+..+. ...... ...+|+.|+|+|. .+|+.|+|+|.++
T Consensus 116 ~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK14287 116 YTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGT-KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII 194 (371)
T ss_pred EEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCC-CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence 56677887666 444445444444433332 111111 2678999999995 4799999999943
Q ss_pred eeEEeecCeEEEEeCCCCCccceEe
Q 030696 136 DSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 136 ~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 195 -----------~~~C~~C~G~g~v~ 208 (371)
T PRK14287 195 -----------KQKCATCGGKGKVR 208 (371)
T ss_pred -----------cccCCCCCCeeEEe
Confidence 36799999998753
No 61
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.54 E-value=6.2e-05 Score=67.60 Aligned_cols=75 Identities=23% Similarity=0.497 Sum_probs=47.9
Q ss_pred cccchhhhhhhc-ccccccccceeeeeeec--cchhhcCCCccCCCCCccCc---------------ccCCCCCCceEEe
Q 030696 74 QRRRSSLESLFR-YDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLYV 135 (173)
Q Consensus 74 ~~~~~~lE~lf~-~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v 135 (173)
+.+..+||++|. ..+.+...+...+..+. ...... ....|..|+|+|. ..|+.|+|.|+++
T Consensus 132 ~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 210 (386)
T PRK14289 132 VKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNN-GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII 210 (386)
T ss_pred EEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCC-CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc
Confidence 555678877663 33444433333332221 111111 2678999999987 3699999999943
Q ss_pred eeEEeecCeEEEEeCCCCCccceEe
Q 030696 136 DSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 136 ~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 211 -----------~~~C~~C~G~g~v~ 224 (386)
T PRK14289 211 -----------KKKCKKCGGEGIVY 224 (386)
T ss_pred -----------CcCCCCCCCCcEEe
Confidence 36899999999764
No 62
>PRK14291 chaperone protein DnaJ; Provisional
Probab=97.43 E-value=0.00013 Score=65.48 Aligned_cols=74 Identities=23% Similarity=0.450 Sum_probs=48.3
Q ss_pred cccchhhhhhhc-ccccccccceeeeeee--ccchhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeeeEE
Q 030696 74 QRRRSSLESLFR-YDRPIPEERIEKPIGL--SLSEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDSIL 139 (173)
Q Consensus 74 ~~~~~~lE~lf~-~~k~i~~~~~~~~~~l--sl~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i~ 139 (173)
..+..+||++|. ..+.+...+...+..+ +...... ....|+.|+|+|. ..|+.|+|+|. +
T Consensus 134 ~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~---- 207 (382)
T PRK14291 134 QTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGS-GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-L---- 207 (382)
T ss_pred EEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCC-CCccCCCCCCceEEEEecceEEEEecCCCCCCceE-E----
Confidence 556678877763 3444444443333322 2222122 2678999999996 57999999996 2
Q ss_pred eecCeEEEEeCCCCCccceEe
Q 030696 140 ESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 140 ~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 208 -------~~~C~~C~G~g~v~ 221 (382)
T PRK14291 208 -------REPCSKCNGRGLVI 221 (382)
T ss_pred -------ccCCCCCCCCceEE
Confidence 26899999999753
No 63
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.38 E-value=0.00015 Score=64.93 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=47.8
Q ss_pred cccchhhhhhhc-ccccccccceeeeeeec--cchhhcCCCccCCCCCccCc---------------ccCCCCCCceEEe
Q 030696 74 QRRRSSLESLFR-YDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLYV 135 (173)
Q Consensus 74 ~~~~~~lE~lf~-~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v 135 (173)
+++..+||++|. ..+.+...+...+..+. ...... ...+|..|+|+|. ..|+.|.|.|+.+
T Consensus 121 ~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (374)
T PRK14293 121 YDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGT-GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI 199 (374)
T ss_pred EEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCC-CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe
Confidence 566788888874 23444433333332221 111111 2578999999996 3699999999943
Q ss_pred eeEEeecCeEEEEeCCCCCccceE
Q 030696 136 DSILESQGIIVKVRCLGCGGTGNI 159 (173)
Q Consensus 136 ~~i~~~~G~~~~~~C~~C~G~G~i 159 (173)
..+|..|.|+|.+
T Consensus 200 -----------~~~C~~C~G~g~v 212 (374)
T PRK14293 200 -----------EDPCDACGGQGVK 212 (374)
T ss_pred -----------ccCCCCCCCCccc
Confidence 3689999999975
No 64
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.33 E-value=0.0002 Score=64.00 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=48.8
Q ss_pred cccchhhhhhhc-ccccccccceeeeeeecc--chhhcCCCccCCCCCccCc---------------ccCCCCCCceEEe
Q 030696 74 QRRRSSLESLFR-YDRPIPEERIEKPIGLSL--SEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLYV 135 (173)
Q Consensus 74 ~~~~~~lE~lf~-~~k~i~~~~~~~~~~lsl--~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~v 135 (173)
..+..+||++|. ..+++...+...+-.+.. .+........|..|+|+|. ..|+.|+|.|+.+
T Consensus 117 ~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 196 (371)
T PRK14292 117 TEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII 196 (371)
T ss_pred EEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence 556778877763 334444444333332221 1111112678999999996 3699999999943
Q ss_pred eeEEeecCeEEEEeCCCCCccceEe
Q 030696 136 DSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 136 ~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|..|.|.|.+.
T Consensus 197 -----------~~~C~~C~G~g~v~ 210 (371)
T PRK14292 197 -----------TDPCTVCRGRGRTL 210 (371)
T ss_pred -----------CCCCCCCCCceEEe
Confidence 36899999999763
No 65
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.28 E-value=0.00021 Score=64.06 Aligned_cols=76 Identities=22% Similarity=0.399 Sum_probs=48.3
Q ss_pred ccccchhhhhhhc-ccccccccceeeeeeecc--chhhcCCCccCCCCCccCc---------------ccCCCCCCceEE
Q 030696 73 EQRRRSSLESLFR-YDRPIPEERIEKPIGLSL--SEKVIGDNPRCTECKAKGA---------------VLCATCSGSGLY 134 (173)
Q Consensus 73 ~~~~~~~lE~lf~-~~k~i~~~~~~~~~~lsl--~~~~~g~~~~C~~C~GsG~---------------~~C~~C~GsG~~ 134 (173)
.+++.++||++|. ..+.+...+...+..+.. ..... ....|..|+|+|. .+|+.|+|+|+.
T Consensus 123 ~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 201 (378)
T PRK14283 123 YTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGS-EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI 201 (378)
T ss_pred EEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCC-CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee
Confidence 3566788888874 223333333333322221 11111 2678999999987 369999999994
Q ss_pred eeeEEeecCeEEEEeCCCCCccceEe
Q 030696 135 VDSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 135 v~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
+ ..+|..|.|.|.+.
T Consensus 202 ~-----------~~~C~~C~G~g~v~ 216 (378)
T PRK14283 202 V-----------EKPCSNCHGKGVVR 216 (378)
T ss_pred c-----------CCCCCCCCCceeec
Confidence 3 36899999999763
No 66
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.00044 Score=65.94 Aligned_cols=45 Identities=38% Similarity=1.007 Sum_probs=33.9
Q ss_pred CccCCCCCccCc------------------------ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe-CCCCc
Q 030696 111 NPRCTECKAKGA------------------------VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM-CAECG 165 (173)
Q Consensus 111 ~~~C~~C~GsG~------------------------~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii-C~~C~ 165 (173)
.+.|+.|+|+|. ..|+.|.|.|.+. ...+|+.|.|+|++. |+.|.
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~----------v~~~c~~c~G~gkv~~c~~cG 87 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT----------VYDTCPECGGTGKVLTCDICG 87 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE----------EEeecccCCCceeEEeecccc
Confidence 667888888875 4788888888832 126888888888887 77774
No 67
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.79 E-value=0.0011 Score=50.72 Aligned_cols=34 Identities=32% Similarity=0.837 Sum_probs=25.1
Q ss_pred ccCCCCCccCc------------ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceE
Q 030696 112 PRCTECKAKGA------------VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNI 159 (173)
Q Consensus 112 ~~C~~C~GsG~------------~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~i 159 (173)
..|..|+|+|. ..|+.|+|+|. ..|..|.|+|.+
T Consensus 53 ~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk--------------~~C~~C~G~G~~ 98 (111)
T PLN03165 53 QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS--------------LTCTTCQGSGIQ 98 (111)
T ss_pred cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce--------------eeCCCCCCCEEE
Confidence 47888888775 46888888886 248888888764
No 68
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0012 Score=59.11 Aligned_cols=67 Identities=25% Similarity=0.577 Sum_probs=49.9
Q ss_pred ccceeeeeeeccchhhcCCCccCCCCCccCcccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe-----------
Q 030696 92 EERIEKPIGLSLSEKVIGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM----------- 160 (173)
Q Consensus 92 ~~~~~~~~~lsl~~~~~g~~~~C~~C~GsG~~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii----------- 160 (173)
+.++...+.++|++.+.+....+. =+....|+.|+|+|..- . ....|+.|.|+|...
T Consensus 100 g~~~~~~~~~~Le~~y~G~s~kl~---l~~~~iCs~C~GsGgks--g-------~~~~C~~C~GsGv~~~~~~~gPg~~q 167 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMGKSKKLF---LSRNFICSKCSGSGGKS--G-------SAPKCTTCRGSGVQTRTRQMGPGMVQ 167 (337)
T ss_pred CCCceEEEEEEHHHhhcCCcccee---cccCccCCcCCCCCCCC--C-------CCCCCCCCCCCCceeEEEeccccccc
Confidence 677888889999999988444332 34447899999998831 0 115799999998765
Q ss_pred -----CCCCcCeeEe
Q 030696 161 -----CAECGGRGHC 170 (173)
Q Consensus 161 -----C~~C~G~G~v 170 (173)
|..|+|.|..
T Consensus 168 s~q~~C~~C~G~G~~ 182 (337)
T KOG0712|consen 168 SPQLVCDSCNGSGET 182 (337)
T ss_pred cceeEeccCCCcccc
Confidence 9999999885
No 69
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0024 Score=55.77 Aligned_cols=70 Identities=34% Similarity=0.698 Sum_probs=51.1
Q ss_pred eeeccchhhcC--------CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe---C
Q 030696 99 IGLSLSEKVIG--------DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM---C 161 (173)
Q Consensus 99 ~~lsl~~~~~g--------~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii---C 161 (173)
..+.|+++..+ ....|..|.|.|. ..|..|.|.|.+. ......++.. +|..|.|.|.+. |
T Consensus 144 ~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~~-~~~~c~~~~~~~~~~c 220 (288)
T KOG0715|consen 144 LSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVS--NPKEDPFILY-TCSYCLGRGLVLRDNC 220 (288)
T ss_pred cccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccccc--ccccCCccee-ecccccccceeccchH
Confidence 44455555544 2678999999998 7899999999632 1112233323 899999999998 9
Q ss_pred CCCcCeeEec
Q 030696 162 AECGGRGHCG 171 (173)
Q Consensus 162 ~~C~G~G~v~ 171 (173)
..|.|.|.+.
T Consensus 221 ~~~~g~~~v~ 230 (288)
T KOG0715|consen 221 QACSGAGQVR 230 (288)
T ss_pred HHhhcchhhh
Confidence 9999998654
No 70
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.04 E-value=0.0036 Score=51.89 Aligned_cols=29 Identities=34% Similarity=0.788 Sum_probs=16.2
Q ss_pred ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe
Q 030696 123 VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 123 ~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..|+.|+|+|.++. ...+|+.|+|+|++.
T Consensus 100 ~~C~~C~G~G~~i~---------~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 100 CKCPRCRGTGLIQR---------RQRECDTCAGTGRFR 128 (186)
T ss_pred CcCCCCCCeeEEec---------CCCCCCCCCCccEEe
Confidence 45666677776320 013566666666553
No 71
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.013 Score=51.31 Aligned_cols=51 Identities=27% Similarity=0.623 Sum_probs=40.0
Q ss_pred ccCCCCCccCcccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEeCCCCc
Q 030696 112 PRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECG 165 (173)
Q Consensus 112 ~~C~~C~GsG~~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~iiC~~C~ 165 (173)
-.|..|.|.+.+.|..|+|+=.+.. .........+|+.|+=.|.+.|+.|.
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~~---~~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVHE---EEEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeeee---eccCCCcEEECcccCCCCceeCCccC
Confidence 6799999999999999999988431 01111123799999999999999995
No 72
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.57 E-value=0.0088 Score=49.58 Aligned_cols=26 Identities=31% Similarity=0.922 Sum_probs=22.2
Q ss_pred CCccCCCCCccCc-----ccCCCCCCceEEe
Q 030696 110 DNPRCTECKAKGA-----VLCATCSGSGLYV 135 (173)
Q Consensus 110 ~~~~C~~C~GsG~-----~~C~~C~GsG~~v 135 (173)
+...|+.|+|+|. ..|+.|+|+|++.
T Consensus 98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFR 128 (186)
T ss_pred cCCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence 4789999999998 2599999999954
No 73
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.40 E-value=0.045 Score=43.56 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=33.8
Q ss_pred CccCCCCCccCcccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEeC
Q 030696 111 NPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMC 161 (173)
Q Consensus 111 ~~~C~~C~GsG~~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~iiC 161 (173)
...|..|.|.+.+.|..|+|+=.++. ....+.....+|+.|+=-|.+.|
T Consensus 99 ~~~C~~Cgg~rfv~C~~C~Gs~k~~~--~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 99 GGVCEGCGGARFVPCSECNGSCKVFA--ENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCCcCeEECCCCCCcceEEe--ccCcccccEEECCCCCccccccC
Confidence 45699999999999999999988431 11001122377888887777655
No 74
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=87.64 E-value=0.59 Score=37.18 Aligned_cols=35 Identities=31% Similarity=0.915 Sum_probs=28.5
Q ss_pred cccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe------------CCCCcCeeEe
Q 030696 122 AVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM------------CAECGGRGHC 170 (173)
Q Consensus 122 ~~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii------------C~~C~G~G~v 170 (173)
...|..|.|.++ ++|..|+|+=+++ |+.|+-.|.+
T Consensus 99 ~~~C~~Cgg~rf--------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 99 GGVCEGCGGARF--------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCcCe--------------EECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 357999999998 5899999985543 9999988865
No 75
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.43 E-value=1.3 Score=39.06 Aligned_cols=35 Identities=29% Similarity=0.862 Sum_probs=28.6
Q ss_pred ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe-----------CCCCcCeeEec
Q 030696 123 VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM-----------CAECGGRGHCG 171 (173)
Q Consensus 123 ~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii-----------C~~C~G~G~v~ 171 (173)
..|..|.|.++ .+|..|+|.-++. |..|+-.|.+.
T Consensus 230 ~~C~~CGg~rF--------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF--------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce--------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 46999999998 5899999986655 99999888763
No 76
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.73 E-value=1 Score=45.33 Aligned_cols=31 Identities=29% Similarity=0.609 Sum_probs=20.1
Q ss_pred cCCCCCCceEEeeeEEeecCeEE--EEeCCCCCccce
Q 030696 124 LCATCSGSGLYVDSILESQGIIV--KVRCLGCGGTGN 158 (173)
Q Consensus 124 ~C~~C~GsG~~v~~i~~~~G~~~--~~~C~~C~G~G~ 158 (173)
.|+.|.|.|+ +...++++. .++|+.|+|+..
T Consensus 738 ~C~~C~G~G~----~~~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGV----IKIEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceE----EEEEccCCCCcccCCCCcCCcee
Confidence 5888999998 333333332 277888887653
No 77
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=77.57 E-value=0.89 Score=39.81 Aligned_cols=68 Identities=24% Similarity=0.494 Sum_probs=42.5
Q ss_pred hhhhcccccccccceeeeeee--ccchhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeeeEEeecCeEEE
Q 030696 81 ESLFRYDRPIPEERIEKPIGL--SLSEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDSILESQGIIVK 147 (173)
Q Consensus 81 E~lf~~~k~i~~~~~~~~~~l--sl~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~i~~~~G~~~~ 147 (173)
|+.++.++.+.......+... ..++.+.. ...|..|.|.|. .+|..|+|.|.+. .
T Consensus 150 ~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~-----------~ 217 (288)
T KOG0715|consen 150 EAVRGSKKRISFNVLSDCETCFGSGAEEGAK-RESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVL-----------R 217 (288)
T ss_pred HHhhccccceEEEeecccccccCcCcccccc-cccchhhhCcccccccccCCcceeecccccccceec-----------c
Confidence 667765444433332222221 22344444 889999999993 3499999999943 2
Q ss_pred EeCCCCCccceEe
Q 030696 148 VRCLGCGGTGNIM 160 (173)
Q Consensus 148 ~~C~~C~G~G~ii 160 (173)
..|..|.|.|.+.
T Consensus 218 ~~c~~~~g~~~v~ 230 (288)
T KOG0715|consen 218 DNCQACSGAGQVR 230 (288)
T ss_pred chHHHhhcchhhh
Confidence 3388898888543
No 78
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=75.57 E-value=1.7 Score=43.89 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=18.6
Q ss_pred cCCCCCCceEEeeeEEeecCeEEE--EeCCCCCccc
Q 030696 124 LCATCSGSGLYVDSILESQGIIVK--VRCLGCGGTG 157 (173)
Q Consensus 124 ~C~~C~GsG~~v~~i~~~~G~~~~--~~C~~C~G~G 157 (173)
.|+.|.|.|.+ ...++++.. .+|+.|+|+.
T Consensus 740 ~C~~C~G~G~~----~~~~~f~~~~~~~C~~C~G~R 771 (943)
T PRK00349 740 RCEACQGDGVI----KIEMHFLPDVYVPCDVCKGKR 771 (943)
T ss_pred CCCcccccceE----EEEeccCCCccccCccccCcc
Confidence 58888888883 333333222 6777777764
No 79
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=74.91 E-value=1.5 Score=37.79 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=18.9
Q ss_pred CccCCCCCccCcccCCCCCCceE
Q 030696 111 NPRCTECKAKGAVLCATCSGSGL 133 (173)
Q Consensus 111 ~~~C~~C~GsG~~~C~~C~GsG~ 133 (173)
..+|..-.|.+.++||+|.|+|+
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGr 49 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGR 49 (238)
T ss_pred cCccccccCCCCCcCCCCcCCcc
Confidence 45566667777899999999999
No 80
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.88 E-value=2.9 Score=42.28 Aligned_cols=23 Identities=39% Similarity=0.855 Sum_probs=17.8
Q ss_pred EeCCCCCccceEe------------CCCCcCeeEe
Q 030696 148 VRCLGCGGTGNIM------------CAECGGRGHC 170 (173)
Q Consensus 148 ~~C~~C~G~G~ii------------C~~C~G~G~v 170 (173)
-.|+.|.|.|.+. |+.|+|+++-
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeC
Confidence 4588888888776 8888887763
No 81
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=67.09 E-value=3.4 Score=44.62 Aligned_cols=30 Identities=27% Similarity=0.574 Sum_probs=18.0
Q ss_pred cCCCCCCceEEeeeEEeecCeEE--EEeCCCCCccc
Q 030696 124 LCATCSGSGLYVDSILESQGIIV--KVRCLGCGGTG 157 (173)
Q Consensus 124 ~C~~C~GsG~~v~~i~~~~G~~~--~~~C~~C~G~G 157 (173)
.|+.|.|.|+ +...+.++. .++|+.|+|+.
T Consensus 1609 rC~~C~G~G~----i~i~m~fl~dv~~~C~~C~G~R 1640 (1809)
T PRK00635 1609 QCSDCWGLGY----QWIDRAFYALEKRPCPTCSGFR 1640 (1809)
T ss_pred CCCCCccCce----EEEecccCCCcccCCCCCCCcC
Confidence 4777888887 333333322 26788887764
No 82
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=61.80 E-value=13 Score=24.17 Aligned_cols=36 Identities=22% Similarity=0.619 Sum_probs=18.2
Q ss_pred ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccce
Q 030696 123 VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGN 158 (173)
Q Consensus 123 ~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ 158 (173)
+.||.|.|....+.......+......|..|+..|.
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~ 37 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGP 37 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEEEEECCCCCCCcc
Confidence 468888888773310011111111136777776654
No 83
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=61.09 E-value=4.7 Score=40.86 Aligned_cols=23 Identities=39% Similarity=0.850 Sum_probs=18.7
Q ss_pred EeCCCCCccceEe------------CCCCcCeeEe
Q 030696 148 VRCLGCGGTGNIM------------CAECGGRGHC 170 (173)
Q Consensus 148 ~~C~~C~G~G~ii------------C~~C~G~G~v 170 (173)
-+|+.|.|.|.+. |+.|+|+.+-
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCcccc
Confidence 4699999998876 9999888764
No 84
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=55.51 E-value=6.6 Score=42.56 Aligned_cols=21 Identities=33% Similarity=1.037 Sum_probs=11.4
Q ss_pred cCCCCCccCc---------ccCCCCCCceE
Q 030696 113 RCTECKAKGA---------VLCATCSGSGL 133 (173)
Q Consensus 113 ~C~~C~GsG~---------~~C~~C~GsG~ 133 (173)
.|+.|.|.|. +.|+.|+|+.+
T Consensus 722 ~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 722 ACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred CCCcceeeEEEEEecCCceEECCccCCccc
Confidence 4566666553 24666665544
No 85
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=55.05 E-value=8.6 Score=38.89 Aligned_cols=29 Identities=34% Similarity=0.734 Sum_probs=14.7
Q ss_pred cCCCCCCceEEeeeEEeecCeE--EEEeCCCCCcc
Q 030696 124 LCATCSGSGLYVDSILESQGII--VKVRCLGCGGT 156 (173)
Q Consensus 124 ~C~~C~GsG~~v~~i~~~~G~~--~~~~C~~C~G~ 156 (173)
+|..|.|.|. +...+.+. +-++|+.|+|+
T Consensus 732 RCe~C~GdG~----ikIeM~FLpdVyv~CevC~Gk 762 (935)
T COG0178 732 RCEACQGDGV----IKIEMHFLPDVYVPCEVCHGK 762 (935)
T ss_pred CCccccCCce----EEEEeccCCCceeeCCCcCCc
Confidence 4666666666 22222221 12666666664
No 86
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=52.61 E-value=12 Score=25.86 Aligned_cols=18 Identities=39% Similarity=0.983 Sum_probs=12.7
Q ss_pred EeCCCCCccceEe-CCCCc
Q 030696 148 VRCLGCGGTGNIM-CAECG 165 (173)
Q Consensus 148 ~~C~~C~G~G~ii-C~~C~ 165 (173)
.+|..|.-.+..+ |+.|.
T Consensus 37 ~RC~~CRk~~~~Y~CP~CG 55 (59)
T PRK14890 37 YRCEKCRKQSNPYTCPKCG 55 (59)
T ss_pred eechhHHhcCCceECCCCC
Confidence 4677777777666 77775
No 87
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=51.78 E-value=8.7 Score=38.85 Aligned_cols=22 Identities=41% Similarity=0.916 Sum_probs=14.5
Q ss_pred EeCCCCCccceEe------------CCCCcCeeE
Q 030696 148 VRCLGCGGTGNIM------------CAECGGRGH 169 (173)
Q Consensus 148 ~~C~~C~G~G~ii------------C~~C~G~G~ 169 (173)
-+|..|+|.|.+. |..|+|+.+
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 4577777777665 777776654
No 88
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=51.47 E-value=6.1 Score=34.13 Aligned_cols=12 Identities=58% Similarity=1.160 Sum_probs=8.4
Q ss_pred EeCCCCCccceE
Q 030696 148 VRCLGCGGTGNI 159 (173)
Q Consensus 148 ~~C~~C~G~G~i 159 (173)
.+||+|+|+|++
T Consensus 39 vtCPTCqGtGrI 50 (238)
T PF07092_consen 39 VTCPTCQGTGRI 50 (238)
T ss_pred CcCCCCcCCccC
Confidence 467777777765
No 89
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=45.06 E-value=9 Score=28.38 Aligned_cols=36 Identities=36% Similarity=0.720 Sum_probs=17.7
Q ss_pred cCCCCCCceEEeeeEEe-ec-CeEEEEeCCCCCccceE
Q 030696 124 LCATCSGSGLYVDSILE-SQ-GIIVKVRCLGCGGTGNI 159 (173)
Q Consensus 124 ~C~~C~GsG~~v~~i~~-~~-G~~~~~~C~~C~G~G~i 159 (173)
.|..|+|.|..++.... .+ |+-....|..|.|.|..
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 45666666654321111 12 33333567777776643
No 90
>PRK04023 DNA polymerase II large subunit; Validated
Probab=43.10 E-value=21 Score=36.91 Aligned_cols=45 Identities=24% Similarity=0.567 Sum_probs=31.7
Q ss_pred CccCCCCCccCc-ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe-CCCCcCe
Q 030696 111 NPRCTECKAKGA-VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM-CAECGGR 167 (173)
Q Consensus 111 ~~~C~~C~GsG~-~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii-C~~C~G~ 167 (173)
...|+.|.-.+. ..|+.|...-.. ...|+.|.-..... |++|.-.
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~------------i~fCP~CG~~~~~y~CPKCG~E 672 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEP------------VYRCPRCGIEVEEDECEKCGRE 672 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCc------------ceeCccccCcCCCCcCCCCCCC
Confidence 678999977655 789999886221 15799996665533 9999643
No 91
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=42.68 E-value=19 Score=22.39 Aligned_cols=10 Identities=20% Similarity=0.820 Sum_probs=6.1
Q ss_pred cCCCCCCceE
Q 030696 124 LCATCSGSGL 133 (173)
Q Consensus 124 ~C~~C~GsG~ 133 (173)
.|+.|...-.
T Consensus 2 ~Cp~Cg~~~~ 11 (43)
T PF08271_consen 2 KCPNCGSKEI 11 (43)
T ss_dssp SBTTTSSSEE
T ss_pred CCcCCcCCce
Confidence 4667766553
No 92
>PF14353 CpXC: CpXC protein
Probab=40.26 E-value=42 Score=25.21 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=9.7
Q ss_pred EEEEeCCCCCccceE
Q 030696 145 IVKVRCLGCGGTGNI 159 (173)
Q Consensus 145 ~~~~~C~~C~G~G~i 159 (173)
+...+||.|+..+.+
T Consensus 36 l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 36 LFSFTCPSCGHKFRL 50 (128)
T ss_pred cCEEECCCCCCceec
Confidence 334778888776543
No 93
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=36.95 E-value=56 Score=20.02 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=13.8
Q ss_pred cCCCCCCceEEeeeEEeecCeEEEEeCCCCCc
Q 030696 124 LCATCSGSGLYVDSILESQGIIVKVRCLGCGG 155 (173)
Q Consensus 124 ~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G 155 (173)
.||.|+..-. .... +-+....|+.|+|
T Consensus 1 ~CP~C~~~l~----~~~~-~~~~id~C~~C~G 27 (41)
T PF13453_consen 1 KCPRCGTELE----PVRL-GDVEIDVCPSCGG 27 (41)
T ss_pred CcCCCCcccc----eEEE-CCEEEEECCCCCe
Confidence 3777766322 1111 2233366888876
No 94
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=36.81 E-value=20 Score=32.44 Aligned_cols=28 Identities=32% Similarity=0.820 Sum_probs=20.4
Q ss_pred cchhhcCCCccCCCCCccCcccCCCCCCceE
Q 030696 103 LSEKVIGDNPRCTECKAKGAVLCATCSGSGL 133 (173)
Q Consensus 103 l~~~~~g~~~~C~~C~GsG~~~C~~C~GsG~ 133 (173)
+.++...-.+.|..|.|.| |..|.++|+
T Consensus 252 FTePS~Evdv~~~~~~g~g---c~~ck~~~W 279 (339)
T PRK00488 252 FTEPSAEVDVSCFKCGGKG---CRVCKGTGW 279 (339)
T ss_pred CCCCceEEEEEEeccCCCc---ccccCCCCc
Confidence 3333333367799999876 899999998
No 95
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=36.76 E-value=51 Score=32.81 Aligned_cols=55 Identities=27% Similarity=0.617 Sum_probs=35.7
Q ss_pred cchhhcCCCccCCCCCccCc-ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe--CCCCcCe
Q 030696 103 LSEKVIGDNPRCTECKAKGA-VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM--CAECGGR 167 (173)
Q Consensus 103 l~~~~~g~~~~C~~C~GsG~-~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii--C~~C~G~ 167 (173)
+-+.++-....|..| |+ ..|+.|...=.+- +.. ....|-.|+=+..+. |+.|.+.
T Consensus 427 lnRRGys~~l~C~~C---g~v~~Cp~Cd~~lt~H----~~~---~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 427 LNRRGYAPLLLCRDC---GYIAECPNCDSPLTLH----KAT---GQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred EccCCccceeecccC---CCcccCCCCCcceEEe----cCC---CeeEeCCCCCCCCCCCCCCCCCCC
Confidence 334444447889999 44 6799999875522 111 136788887774444 8888776
No 96
>PRK05978 hypothetical protein; Provisional
Probab=35.71 E-value=18 Score=29.00 Aligned_cols=7 Identities=43% Similarity=1.265 Sum_probs=4.9
Q ss_pred EeCCCCC
Q 030696 148 VRCLGCG 154 (173)
Q Consensus 148 ~~C~~C~ 154 (173)
..|+.|+
T Consensus 53 ~~C~~CG 59 (148)
T PRK05978 53 DHCAACG 59 (148)
T ss_pred CCccccC
Confidence 6777774
No 97
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=35.23 E-value=31 Score=36.50 Aligned_cols=44 Identities=25% Similarity=0.662 Sum_probs=30.0
Q ss_pred CccCCCCCccCc-ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCcc------ceEeCCCCcC
Q 030696 111 NPRCTECKAKGA-VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGT------GNIMCAECGG 166 (173)
Q Consensus 111 ~~~C~~C~GsG~-~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~------G~iiC~~C~G 166 (173)
...|+.|..... ..|+.|...=.. ...|+.|+.. +...|+.|.-
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~------------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEP------------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCC------------ceeCccCCCccCCCccccccCCCCCC
Confidence 578999977544 679999887431 1478888773 2234999864
No 98
>PF15616 TerY-C: TerY-C metal binding domain
Probab=34.83 E-value=60 Score=25.61 Aligned_cols=18 Identities=39% Similarity=1.022 Sum_probs=10.8
Q ss_pred CccceEeCCCCcCeeEec
Q 030696 154 GGTGNIMCAECGGRGHCG 171 (173)
Q Consensus 154 ~G~G~iiC~~C~G~G~v~ 171 (173)
+|.+.++|++|.-.+...
T Consensus 101 ~g~~~~~CPwCg~~g~~~ 118 (131)
T PF15616_consen 101 DGEGEVTCPWCGNEGSFG 118 (131)
T ss_pred CCCCCEECCCCCCeeeec
Confidence 455566677776665543
No 99
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=32.83 E-value=30 Score=21.84 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=4.8
Q ss_pred cCCCCCCceE
Q 030696 124 LCATCSGSGL 133 (173)
Q Consensus 124 ~C~~C~GsG~ 133 (173)
.||.|.|+..
T Consensus 5 pCP~CGG~Dr 14 (40)
T PF08273_consen 5 PCPICGGKDR 14 (40)
T ss_dssp --TTTT-TTT
T ss_pred CCCCCcCccc
Confidence 5677777665
No 100
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=31.33 E-value=44 Score=21.06 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=24.0
Q ss_pred eEEeeCCCCCcCcCcCCCCCCCCCCcccccchhhhhhhc
Q 030696 47 RICAVSPNGSVSPSACGGSESSSTGNEQRRRSSLESLFR 85 (173)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~k~d~~~~~~~lE~lf~ 85 (173)
....|.|+|.|.++..........+++ +.+|++++.
T Consensus 6 ~~~~I~~dG~v~pC~~~~~~~~~~Gni---~~~l~eiw~ 41 (64)
T PF13186_consen 6 NSLYIDPDGDVYPCCHDYDPEFKIGNI---EDSLEEIWN 41 (64)
T ss_pred eEEEEeeCccEEeCCCCCCCCeEEeec---CCCHHHHHC
Confidence 345699999999996544444455554 346777773
No 101
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.34 E-value=75 Score=29.80 Aligned_cols=49 Identities=33% Similarity=0.694 Sum_probs=30.6
Q ss_pred CccCCCCCccCcccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe--CCCCcCee
Q 030696 111 NPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM--CAECGGRG 168 (173)
Q Consensus 111 ~~~C~~C~GsG~~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii--C~~C~G~G 168 (173)
...|..|.-. ..|+.|++.=.+- ... ....|..|+-+-... |+.|.+..
T Consensus 213 ~~~C~~Cg~~--~~C~~C~~~l~~h----~~~---~~l~Ch~Cg~~~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 213 NLLCRSCGYI--LCCPNCDVSLTYH----KKE---GKLRCHYCGYQEPIPKTCPQCGSED 263 (505)
T ss_pred eeEhhhCcCc--cCCCCCCCceEEe----cCC---CeEEcCCCcCcCCCCCCCCCCCCCe
Confidence 6789888332 6799999865421 111 125788886554443 88887653
No 102
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=29.22 E-value=66 Score=19.06 Aligned_cols=7 Identities=71% Similarity=1.531 Sum_probs=4.2
Q ss_pred EeCCCCC
Q 030696 148 VRCLGCG 154 (173)
Q Consensus 148 ~~C~~C~ 154 (173)
.+|+.|+
T Consensus 26 v~C~~C~ 32 (38)
T TIGR02098 26 VRCGKCG 32 (38)
T ss_pred EECCCCC
Confidence 5566664
No 103
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=29.05 E-value=56 Score=20.30 Aligned_cols=10 Identities=40% Similarity=0.953 Sum_probs=5.7
Q ss_pred cCCCCCCceE
Q 030696 124 LCATCSGSGL 133 (173)
Q Consensus 124 ~C~~C~GsG~ 133 (173)
.||.|.|+..
T Consensus 5 pCP~CGG~Dr 14 (37)
T smart00778 5 PCPNCGGSDR 14 (37)
T ss_pred CCCCCCCccc
Confidence 4566666554
No 104
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=28.29 E-value=19 Score=30.08 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=12.7
Q ss_pred ccCCCCCccCc--ccCCCCCCceE
Q 030696 112 PRCTECKAKGA--VLCATCSGSGL 133 (173)
Q Consensus 112 ~~C~~C~GsG~--~~C~~C~GsG~ 133 (173)
..|..|++.-. ..||.|...|.
T Consensus 163 ilCtvCe~r~w~g~~CPKCGr~G~ 186 (200)
T PF12387_consen 163 ILCTVCEGREWKGGNCPKCGRHGK 186 (200)
T ss_pred EEEeeeecCccCCCCCCcccCCCC
Confidence 45666666544 44666666665
No 105
>PRK14873 primosome assembly protein PriA; Provisional
Probab=27.47 E-value=80 Score=30.93 Aligned_cols=61 Identities=20% Similarity=0.477 Sum_probs=36.7
Q ss_pred eeeccchhhcCCCccCCCCCccCcccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceE-eCCCCcCee
Q 030696 99 IGLSLSEKVIGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNI-MCAECGGRG 168 (173)
Q Consensus 99 ~~lsl~~~~~g~~~~C~~C~GsG~~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~i-iC~~C~G~G 168 (173)
+-+-+.+.++-....|..|.-. ..|+.|++.=.+- ... ....|..|+-.-.- .|+.|.+.-
T Consensus 371 vll~lnRrGyap~l~C~~Cg~~--~~C~~C~~~L~~h----~~~---~~l~Ch~CG~~~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 371 VLVQVPRRGYVPSLACARCRTP--ARCRHCTGPLGLP----SAG---GTPRCRWCGRAAPDWRCPRCGSDR 432 (665)
T ss_pred EEEEecCCCCCCeeEhhhCcCe--eECCCCCCceeEe----cCC---CeeECCCCcCCCcCccCCCCcCCc
Confidence 3344455555557789999322 6799999976531 111 12578888654311 188887653
No 106
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=26.34 E-value=84 Score=20.40 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=6.6
Q ss_pred ccCCCCCCceE
Q 030696 123 VLCATCSGSGL 133 (173)
Q Consensus 123 ~~C~~C~GsG~ 133 (173)
+.||.| |...
T Consensus 4 kPCPFC-G~~~ 13 (61)
T PF14354_consen 4 KPCPFC-GSAD 13 (61)
T ss_pred cCCCCC-CCcc
Confidence 457888 6555
No 107
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=24.02 E-value=72 Score=19.16 Aligned_cols=10 Identities=40% Similarity=1.311 Sum_probs=6.3
Q ss_pred cCCCCCCceE
Q 030696 124 LCATCSGSGL 133 (173)
Q Consensus 124 ~C~~C~GsG~ 133 (173)
.|..|++.|.
T Consensus 5 ~C~~C~~~~i 14 (33)
T PF08792_consen 5 KCSKCGGNGI 14 (33)
T ss_pred EcCCCCCCeE
Confidence 4666666665
No 108
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=23.43 E-value=33 Score=28.68 Aligned_cols=27 Identities=33% Similarity=0.904 Sum_probs=21.0
Q ss_pred ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe-C
Q 030696 123 VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM-C 161 (173)
Q Consensus 123 ~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii-C 161 (173)
..|..|.+.-+. ...||.|+..|.-+ |
T Consensus 163 ilCtvCe~r~w~------------g~~CPKCGr~G~pi~C 190 (200)
T PF12387_consen 163 ILCTVCEGREWK------------GGNCPKCGRHGKPITC 190 (200)
T ss_pred EEEeeeecCccC------------CCCCCcccCCCCCeec
Confidence 578889887761 26799999999876 5
No 109
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.25 E-value=56 Score=24.77 Aligned_cols=26 Identities=27% Similarity=0.715 Sum_probs=14.6
Q ss_pred hhhcCCCccCCCCCccCc------ccCCCCCC
Q 030696 105 EKVIGDNPRCTECKAKGA------VLCATCSG 130 (173)
Q Consensus 105 ~~~~g~~~~C~~C~GsG~------~~C~~C~G 130 (173)
+.-+|.+.+|+.|.-+=+ .+||.|.-
T Consensus 3 kpelGtKR~Cp~CG~kFYDLnk~PivCP~CG~ 34 (108)
T PF09538_consen 3 KPELGTKRTCPSCGAKFYDLNKDPIVCPKCGT 34 (108)
T ss_pred ccccCCcccCCCCcchhccCCCCCccCCCCCC
Confidence 334556778888833211 55776643
No 110
>PRK00420 hypothetical protein; Validated
Probab=22.47 E-value=58 Score=25.00 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=3.6
Q ss_pred EeCCCCC
Q 030696 148 VRCLGCG 154 (173)
Q Consensus 148 ~~C~~C~ 154 (173)
..||.|+
T Consensus 41 ~~Cp~Cg 47 (112)
T PRK00420 41 VVCPVHG 47 (112)
T ss_pred eECCCCC
Confidence 4455553
No 111
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=22.32 E-value=1.9e+02 Score=17.78 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=15.5
Q ss_pred cCCCCCCceEEeeeEEeec-----CeEEEEeCCCCC
Q 030696 124 LCATCSGSGLYVDSILESQ-----GIIVKVRCLGCG 154 (173)
Q Consensus 124 ~C~~C~GsG~~v~~i~~~~-----G~~~~~~C~~C~ 154 (173)
.|+.|+....+. .+.+. ++...-.|..|+
T Consensus 2 ~Cp~C~~~~a~~--~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATF--FQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEE--EEEcccCCCCCCeEEEEeCCCC
Confidence 588887776643 11111 333336777774
No 112
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.65 E-value=84 Score=26.37 Aligned_cols=24 Identities=38% Similarity=0.837 Sum_probs=15.8
Q ss_pred CCccCCCCCccCc--ccCC-----CCCCceE
Q 030696 110 DNPRCTECKAKGA--VLCA-----TCSGSGL 133 (173)
Q Consensus 110 ~~~~C~~C~GsG~--~~C~-----~C~GsG~ 133 (173)
+...|..|...|. .-|+ .|+=.|-
T Consensus 59 ~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H 89 (190)
T COG5082 59 ENPVCFNCGQNGHLRRDCPHSICYNCSWDGH 89 (190)
T ss_pred cccccchhcccCcccccCChhHhhhcCCCCc
Confidence 3677888888887 3355 7743444
No 113
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=21.49 E-value=71 Score=18.14 Aligned_cols=6 Identities=33% Similarity=1.126 Sum_probs=3.6
Q ss_pred EeCCCC
Q 030696 148 VRCLGC 153 (173)
Q Consensus 148 ~~C~~C 153 (173)
-+||+|
T Consensus 17 f~CPnC 22 (24)
T PF07754_consen 17 FPCPNC 22 (24)
T ss_pred EeCCCC
Confidence 456666
No 114
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.72 E-value=72 Score=19.31 Aligned_cols=10 Identities=20% Similarity=0.467 Sum_probs=6.3
Q ss_pred cCCCCCCceE
Q 030696 124 LCATCSGSGL 133 (173)
Q Consensus 124 ~C~~C~GsG~ 133 (173)
.|+.|+-.-.
T Consensus 4 ~CP~C~~~f~ 13 (37)
T PF13719_consen 4 TCPNCQTRFR 13 (37)
T ss_pred ECCCCCceEE
Confidence 5666766555
No 115
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=20.70 E-value=48 Score=31.49 Aligned_cols=8 Identities=38% Similarity=1.053 Sum_probs=6.5
Q ss_pred CccCCCCC
Q 030696 111 NPRCTECK 118 (173)
Q Consensus 111 ~~~C~~C~ 118 (173)
++.|++|.
T Consensus 453 r~lC~~C~ 460 (564)
T TIGR02538 453 RRLCSHCK 460 (564)
T ss_pred hhcccccC
Confidence 67898886
Done!