Query 030696
Match_columns 173
No_of_seqs 167 out of 1747
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.5 2.4E-14 8.1E-19 105.3 7.2 59 110-172 27-95 (104)
2 1nlt_A Protein YDJ1, mitochond 99.3 2.7E-12 9.3E-17 107.5 6.4 59 111-171 38-109 (248)
3 1exk_A DNAJ protein; extended 99.2 5.6E-12 1.9E-16 87.7 4.9 61 109-173 9-79 (79)
4 2ctt_A DNAJ homolog subfamily 98.5 4.2E-08 1.4E-12 71.7 3.6 77 72-160 4-94 (104)
5 1nlt_A Protein YDJ1, mitochond 98.2 4.1E-07 1.4E-11 75.9 3.2 82 68-160 8-109 (248)
6 1exk_A DNAJ protein; extended 97.9 6.9E-06 2.4E-10 56.6 3.4 39 111-160 28-77 (79)
7 3lcz_A YCZA, inhibitor of trap 97.1 0.00023 7.7E-09 46.8 2.3 24 148-171 10-36 (53)
8 2bx9_A Anti-trap, AT, tryptoph 96.8 0.00055 1.9E-08 44.9 2.4 23 111-133 9-34 (53)
9 3lcz_A YCZA, inhibitor of trap 96.7 0.00075 2.6E-08 44.3 2.4 23 111-133 9-34 (53)
10 2bx9_A Anti-trap, AT, tryptoph 96.5 0.0013 4.4E-08 43.1 2.3 27 123-160 10-36 (53)
11 3pmq_A Decaheme cytochrome C M 79.4 0.31 1E-05 46.2 -0.6 61 98-158 170-257 (669)
12 1pft_A TFIIB, PFTFIIBN; N-term 53.6 6.3 0.00022 24.2 1.7 8 157-164 23-30 (50)
13 3agx_A DNAJ homolog subfamily 49.8 3.5 0.00012 32.2 0.0 9 125-133 30-38 (181)
14 3nyb_B Protein AIR2; polya RNA 46.6 11 0.00037 26.2 2.2 50 110-163 4-64 (83)
15 3pmq_A Decaheme cytochrome C M 44.9 7.3 0.00025 36.8 1.4 74 81-157 177-281 (669)
16 1dl6_A Transcription factor II 35.0 17 0.00058 23.4 1.6 8 157-164 29-36 (58)
17 2lli_A Protein AIR2; RNA surve 25.8 24 0.00082 25.4 1.2 22 112-133 23-53 (124)
18 2bl6_A Nucleocapsid protein P1 20.1 21 0.00071 20.5 -0.1 10 149-158 21-30 (37)
19 2hf1_A Tetraacyldisaccharide-1 20.1 49 0.0017 22.0 1.8 8 157-164 25-32 (68)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=105.30 Aligned_cols=59 Identities=36% Similarity=0.806 Sum_probs=50.0
Q ss_pred CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEecc
Q 030696 110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCGP 172 (173)
Q Consensus 110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~~ 172 (173)
+.+.|+.|+|+|. .+|+.|+|+|++ ...+|+++. ++|+.|.|+|+++ |+.|+|.|++..
T Consensus 27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~----~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~ 95 (104)
T 2ctt_A 27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGME----TINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQ 95 (104)
T ss_dssp CCEECSSSSSSSSCTTCCCEECSSSSSSCEE----EEEETTEEEEEECSSSSSSSEECSSCCSSSSSCSEECC
T ss_pred eeeECCCCcCCccCCCCCCccCCCCCCCEEE----EEEeCCEEEEEECCcCCCcceECCCcCCCCCCeeEEEE
Confidence 4789999999996 679999999993 333476655 8999999999997 999999998853
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.29 E-value=2.7e-12 Score=107.49 Aligned_cols=59 Identities=32% Similarity=0.830 Sum_probs=48.1
Q ss_pred CccCCCCCccCc-----ccCCCCCCceEEeeeEEeecCe-EEE--EeCCCCCccceEe-----CCCCcCeeEec
Q 030696 111 NPRCTECKAKGA-----VLCATCSGSGLYVDSILESQGI-IVK--VRCLGCGGTGNIM-----CAECGGRGHCG 171 (173)
Q Consensus 111 ~~~C~~C~GsG~-----~~C~~C~GsG~~v~~i~~~~G~-~~~--~~C~~C~G~G~ii-----C~~C~G~G~v~ 171 (173)
.+.|..|+|+|+ .+|+.|+|+|+++ ..++.|. +++ ++|+.|+|+|+++ |+.|+|.|++.
T Consensus 38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~--~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 38 QILCKECEGRGGKKGAVKKCTSCNGQGIKF--VTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN 109 (248)
T ss_dssp EEECTTTTTCSBSTTTCCCCTTSSSSSCEE--EEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred EEeCCCCcCccCCCCCCccCCCCCCCcEEE--EEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEe
Confidence 779999999996 7899999999964 3333454 322 8999999999877 99999999874
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.25 E-value=5.6e-12 Score=87.73 Aligned_cols=61 Identities=33% Similarity=0.758 Sum_probs=51.0
Q ss_pred CCCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEeccC
Q 030696 109 GDNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCGPK 173 (173)
Q Consensus 109 g~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~~~ 173 (173)
.+.++|+.|+|+|. .+|+.|+|+|+++ ..+|+++. .+|+.|+|+|+++ |+.|+|.|++..|
T Consensus 9 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~----~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~~~ 79 (79)
T 1exk_A 9 PTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQ----MRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERS 79 (79)
T ss_dssp CCEEECGGGTTTSBCSSSCCEECTTTTTSSEEE----EEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEECC
T ss_pred ccceECCCCcccccCCCccCCCCCCCcCeEEEE----EEcCCCEEeeECcCCCCccEECCCcCCCCCCeEEEeeC
Confidence 34789999999996 5799999999943 23376655 8999999999996 9999999998765
No 4
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=4.2e-08 Score=71.74 Aligned_cols=77 Identities=16% Similarity=0.337 Sum_probs=53.5
Q ss_pred cccccchhhhhhh-cccccccccceeeeeeec--cchhhcCCCccCCCCCccCc-----------ccCCCCCCceEEeee
Q 030696 72 NEQRRRSSLESLF-RYDRPIPEERIEKPIGLS--LSEKVIGDNPRCTECKAKGA-----------VLCATCSGSGLYVDS 137 (173)
Q Consensus 72 d~~~~~~~lE~lf-~~~k~i~~~~~~~~~~ls--l~~~~~g~~~~C~~C~GsG~-----------~~C~~C~GsG~~v~~ 137 (173)
..+++.++||++| +..+++...+...+.... ..+... ...+|+.|+|+|. .+|+.|+|+|.++
T Consensus 4 ~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~-~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-- 80 (104)
T 2ctt_A 4 GSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGT-KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-- 80 (104)
T ss_dssp CCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTC-CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC--
T ss_pred eEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCC-CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC--
Confidence 3466777785555 556666666665554432 222222 2589999999995 4799999999953
Q ss_pred EEeecCeEEEEeCCCCCccceEe
Q 030696 138 ILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 138 i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|+.|.|.|.+.
T Consensus 81 ---------~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 81 ---------ISPCVVCRGAGQAK 94 (104)
T ss_dssp ---------SSCCSSSSSCSEEC
T ss_pred ---------CCcCCCCCCeeEEE
Confidence 36899999999863
No 5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.25 E-value=4.1e-07 Score=75.94 Aligned_cols=82 Identities=24% Similarity=0.436 Sum_probs=53.5
Q ss_pred CCCCcc--cccchhhhhhh-cccccccccceeeeeee--ccchhhcCCCccCCCCCccCc---------------ccCCC
Q 030696 68 SSTGNE--QRRRSSLESLF-RYDRPIPEERIEKPIGL--SLSEKVIGDNPRCTECKAKGA---------------VLCAT 127 (173)
Q Consensus 68 ~~k~d~--~~~~~~lE~lf-~~~k~i~~~~~~~~~~l--sl~~~~~g~~~~C~~C~GsG~---------------~~C~~ 127 (173)
+.++.+ +++..+||++| +..+.+...+...+..+ +.++.. ...+|+.|+|+|. .+|+.
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g--~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~ 85 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKG--AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDV 85 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTT--TCCCCTTSSSSSCEEEEEESSSEEEEEECSCTT
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCC--CCccCCCCCCCcEEEEEEecCceEEEEEEcCCC
Confidence 334444 55667775555 55666665554444333 333332 2589999999995 47999
Q ss_pred CCCceEEeeeEEeecCeEEEEeCCCCCccceEe
Q 030696 128 CSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 128 C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
|+|+|.++. ...+|+.|.|.|.+.
T Consensus 86 C~G~G~~i~---------~~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 86 CHGTGDIID---------PKDRCKSCNGKKVEN 109 (248)
T ss_dssp CSSSSSCCC---------TTSBCSSSTTSCEEE
T ss_pred CCCcCEEec---------cCCCCcccCCCceEe
Confidence 999998430 026899999999764
No 6
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.90 E-value=6.9e-06 Score=56.56 Aligned_cols=39 Identities=33% Similarity=0.859 Sum_probs=32.5
Q ss_pred CccCCCCCccCcc-----------cCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe
Q 030696 111 NPRCTECKAKGAV-----------LCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 111 ~~~C~~C~GsG~~-----------~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
..+|+.|+|+|.+ +|+.|+|.|.++ ..+|+.|.|.|.+.
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-----------KDPCNKCHGHGRVE 77 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-----------SSBCGGGTTSSEEE
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-----------CCcCCCCCCeEEEe
Confidence 5789999999962 799999999943 26899999999863
No 7
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.10 E-value=0.00023 Score=46.81 Aligned_cols=24 Identities=33% Similarity=0.834 Sum_probs=16.4
Q ss_pred EeCCCCCccceEe---CCCCcCeeEec
Q 030696 148 VRCLGCGGTGNIM---CAECGGRGHCG 171 (173)
Q Consensus 148 ~~C~~C~G~G~ii---C~~C~G~G~v~ 171 (173)
.+|+.|+|+|+++ |+.|+|+|++.
T Consensus 10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 10 TTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp EECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred ccCcCCcccccCCCCcCCCCCCcEEEE
Confidence 5677777777765 77777777653
No 8
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.83 E-value=0.00055 Score=44.92 Aligned_cols=23 Identities=35% Similarity=0.992 Sum_probs=15.7
Q ss_pred CccCCCCCccCc---ccCCCCCCceE
Q 030696 111 NPRCTECKAKGA---VLCATCSGSGL 133 (173)
Q Consensus 111 ~~~C~~C~GsG~---~~C~~C~GsG~ 133 (173)
..+|+.|+|+|. .+|+.|+|.|+
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~ 34 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGV 34 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSE
T ss_pred cccCCCCcceeccCCCCCccCCCCcc
Confidence 346777777776 45777777776
No 9
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.72 E-value=0.00075 Score=44.28 Aligned_cols=23 Identities=30% Similarity=0.933 Sum_probs=16.6
Q ss_pred CccCCCCCccCc---ccCCCCCCceE
Q 030696 111 NPRCTECKAKGA---VLCATCSGSGL 133 (173)
Q Consensus 111 ~~~C~~C~GsG~---~~C~~C~GsG~ 133 (173)
..+|+.|+|+|. ..|+.|+|.|+
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~ 34 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGV 34 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSE
T ss_pred eccCcCCcccccCCCCcCCCCCCcEE
Confidence 456777777777 56777777776
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.48 E-value=0.0013 Score=43.13 Aligned_cols=27 Identities=33% Similarity=0.797 Sum_probs=16.8
Q ss_pred ccCCCCCCceEEeeeEEeecCeEEEEeCCCCCccceEe
Q 030696 123 VLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIM 160 (173)
Q Consensus 123 ~~C~~C~GsG~~v~~i~~~~G~~~~~~C~~C~G~G~ii 160 (173)
.+|+.|+|+|.++ ..+|+.|+|+|.++
T Consensus 10 ~~C~~C~GsG~~~-----------~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIE-----------GTPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEET-----------TEECTTTTTSSEEE
T ss_pred ccCCCCcceeccC-----------CCCCccCCCCccEE
Confidence 4677777777632 25677777766653
No 11
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=79.41 E-value=0.31 Score=46.15 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=39.4
Q ss_pred eeeeccchhhcC--------CCccCCCCCccCc---------ccCCCCCCceEEeee-------EEeec-CeE-EE-EeC
Q 030696 98 PIGLSLSEKVIG--------DNPRCTECKAKGA---------VLCATCSGSGLYVDS-------ILESQ-GII-VK-VRC 150 (173)
Q Consensus 98 ~~~lsl~~~~~g--------~~~~C~~C~GsG~---------~~C~~C~GsG~~v~~-------i~~~~-G~~-~~-~~C 150 (173)
.+.++|++.+.+ +.+.|..|+|+|+ .+|++|+|+....+. +...+ |.+ +. ..|
T Consensus 170 ~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C 249 (669)
T 3pmq_A 170 NQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNC 249 (669)
T ss_dssp CCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCC
T ss_pred EEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcc
Confidence 355677776655 4789999999885 579999999421000 11111 322 22 689
Q ss_pred CCCCccce
Q 030696 151 LGCGGTGN 158 (173)
Q Consensus 151 ~~C~G~G~ 158 (173)
..|+..+.
T Consensus 250 ~~CH~~~~ 257 (669)
T 3pmq_A 250 QTCHADNP 257 (669)
T ss_dssp TTTSCCCT
T ss_pred hhhcCCcc
Confidence 99999885
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=53.62 E-value=6.3 Score=24.25 Aligned_cols=8 Identities=63% Similarity=1.651 Sum_probs=4.2
Q ss_pred ceEeCCCC
Q 030696 157 GNIMCAEC 164 (173)
Q Consensus 157 G~iiC~~C 164 (173)
|..+|..|
T Consensus 23 gelvC~~C 30 (50)
T 1pft_A 23 GEIVCAKC 30 (50)
T ss_dssp TEEEESSS
T ss_pred CeEECccc
Confidence 44445555
No 13
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=49.78 E-value=3.5 Score=32.16 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=5.6
Q ss_pred CCCCCCceE
Q 030696 125 CATCSGSGL 133 (173)
Q Consensus 125 C~~C~GsG~ 133 (173)
|..|+|.|.
T Consensus 30 c~~c~G~g~ 38 (181)
T 3agx_A 30 RLNPDGKSI 38 (181)
T ss_dssp EECTTSSCE
T ss_pred cCCCCCceE
Confidence 555666665
No 14
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=46.61 E-value=11 Score=26.20 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=25.5
Q ss_pred CCccCCCCCccCc--------ccCCCCCCceEEeeeEEeec-CeEEEEeCCCCCccceEe--CCC
Q 030696 110 DNPRCTECKAKGA--------VLCATCSGSGLYVDSILESQ-GIIVKVRCLGCGGTGNIM--CAE 163 (173)
Q Consensus 110 ~~~~C~~C~GsG~--------~~C~~C~GsG~~v~~i~~~~-G~~~~~~C~~C~G~G~ii--C~~ 163 (173)
+.+.|..|...|. ..|-.|...|.+. ... .......|-.|+..|.+- |+.
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~----~~c~~p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKA----KPKVLPFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-----------------CCCBCSSSSCBSSCGGGCSS
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCccc----ccccCCCCCCeecccCCCCcCcccCCc
Confidence 3678999999998 3466677776621 111 001125688888888765 665
No 15
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=44.95 E-value=7.3 Score=36.82 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=45.9
Q ss_pred hhhhcccccccccceeeeeee--ccchhhc--CCCccCCCCCccC------------------------cccCCCCCCce
Q 030696 81 ESLFRYDRPIPEERIEKPIGL--SLSEKVI--GDNPRCTECKAKG------------------------AVLCATCSGSG 132 (173)
Q Consensus 81 E~lf~~~k~i~~~~~~~~~~l--sl~~~~~--g~~~~C~~C~GsG------------------------~~~C~~C~GsG 132 (173)
|+.++..+++...+.+.+..+ ++++.+. ...+.|+.|+|.. ...|..|+..+
T Consensus 177 eA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~ 256 (669)
T 3pmq_A 177 SSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADN 256 (669)
T ss_dssp CSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCC
T ss_pred HhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCc
Confidence 667776777666665555333 4554443 1378999999993 14699999987
Q ss_pred EEeeeEEeecCeE--EE-EeCCCCCccc
Q 030696 133 LYVDSILESQGII--VK-VRCLGCGGTG 157 (173)
Q Consensus 133 ~~v~~i~~~~G~~--~~-~~C~~C~G~G 157 (173)
.- ..+...|. .. ..|..|+...
T Consensus 257 ~~---la~~~~w~~~ps~~aC~sCH~~~ 281 (669)
T 3pmq_A 257 PD---LADRQNWYRVPTMEACGACHTQI 281 (669)
T ss_dssp TT---CCSCSCTTTCCCHHHHHHHCCSC
T ss_pred cc---cccccccccCCchhhhhhccCCc
Confidence 50 11222342 12 7799998643
No 16
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.05 E-value=17 Score=23.41 Aligned_cols=8 Identities=50% Similarity=1.692 Sum_probs=3.5
Q ss_pred ceEeCCCC
Q 030696 157 GNIMCAEC 164 (173)
Q Consensus 157 G~iiC~~C 164 (173)
|.++|..|
T Consensus 29 ge~vC~~C 36 (58)
T 1dl6_A 29 GDMICPEC 36 (58)
T ss_dssp CCEECTTT
T ss_pred CeEEeCCC
Confidence 33444444
No 17
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=25.81 E-value=24 Score=25.36 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=12.8
Q ss_pred ccCCCCCcc-Cc--------ccCCCCCCceE
Q 030696 112 PRCTECKAK-GA--------VLCATCSGSGL 133 (173)
Q Consensus 112 ~~C~~C~Gs-G~--------~~C~~C~GsG~ 133 (173)
..|-.|... |. ..|..|...|-
T Consensus 23 ~~C~~Cg~~~gH~~~~C~~~~~C~~Cg~~GH 53 (124)
T 2lli_A 23 IICSYCGATDDHYSRHCPKAIQCSKCDEVGH 53 (124)
T ss_dssp CCCTTTCCTTTCCTTTGGGSSCSSSSSCSSS
T ss_pred CcCcCCCCcCCccCcccCCcccccccCCCCC
Confidence 356666655 44 35666666665
No 18
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=20.11 E-value=21 Score=20.53 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=4.8
Q ss_pred eCCCCCccce
Q 030696 149 RCLGCGGTGN 158 (173)
Q Consensus 149 ~C~~C~G~G~ 158 (173)
.|..|...|.
T Consensus 21 ~C~~Cg~~GH 30 (37)
T 2bl6_A 21 VCFKCKQPGH 30 (37)
T ss_dssp TCSSCCCTTG
T ss_pred eEccCCCcCC
Confidence 3555555444
No 19
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.09 E-value=49 Score=22.02 Aligned_cols=8 Identities=13% Similarity=0.559 Sum_probs=4.4
Q ss_pred ceEeCCCC
Q 030696 157 GNIMCAEC 164 (173)
Q Consensus 157 G~iiC~~C 164 (173)
|..+|+.|
T Consensus 25 ~~LiC~~c 32 (68)
T 2hf1_A 25 DELICKGD 32 (68)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 45556655
Done!