Query 030697
Match_columns 173
No_of_seqs 186 out of 1085
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00482 nicotinate (nicotina 100.0 1E-41 2.2E-46 262.6 15.4 149 4-167 44-193 (193)
2 PLN02945 nicotinamide-nucleoti 100.0 2.9E-41 6.3E-46 267.4 17.0 167 2-168 70-236 (236)
3 PRK06973 nicotinic acid mononu 100.0 6.9E-41 1.5E-45 265.5 15.0 154 2-168 65-242 (243)
4 PRK00071 nadD nicotinic acid m 100.0 1.6E-40 3.5E-45 257.8 15.0 151 4-168 51-202 (203)
5 cd09286 NMNAT_Eukarya Nicotina 100.0 2.9E-40 6.3E-45 259.8 16.5 166 2-167 49-225 (225)
6 COG1057 NadD Nicotinic acid mo 100.0 3.9E-40 8.4E-45 253.3 13.1 147 3-169 49-197 (197)
7 cd02165 NMNAT Nicotinamide/nic 100.0 2.4E-37 5.1E-42 238.1 14.5 148 4-167 45-192 (192)
8 PRK08887 nicotinic acid mononu 100.0 6.1E-37 1.3E-41 232.5 11.6 128 2-171 42-174 (174)
9 PRK07152 nadD putative nicotin 100.0 1.4E-35 3E-40 246.4 13.5 138 5-169 49-186 (342)
10 KOG3199 Nicotinamide mononucle 100.0 2E-29 4.3E-34 191.2 13.8 170 2-171 57-234 (234)
11 TIGR01510 coaD_prev_kdtB pante 99.9 7.2E-23 1.6E-27 152.7 8.3 116 2-164 39-154 (155)
12 cd02163 PPAT Phosphopantethein 99.9 1.1E-22 2.5E-27 151.3 7.1 114 2-163 39-153 (153)
13 PRK00168 coaD phosphopantethei 99.9 1.5E-21 3.3E-26 146.1 8.6 116 2-164 41-156 (159)
14 PF01467 CTP_transf_2: Cytidyl 99.8 8.4E-19 1.8E-23 128.8 5.8 115 3-142 43-157 (157)
15 COG0669 CoaD Phosphopantethein 99.2 5.7E-11 1.2E-15 87.3 7.8 116 2-164 42-157 (159)
16 cd02168 NMNAT_Nudix Nicotinami 99.0 1.7E-09 3.7E-14 82.6 7.5 33 133-165 132-166 (181)
17 cd02039 cytidylyltransferase_l 98.9 3.8E-09 8.2E-14 76.5 6.4 98 3-141 45-142 (143)
18 TIGR00339 sopT ATP sulphurylas 98.9 2.6E-08 5.6E-13 84.1 11.6 137 1-162 224-382 (383)
19 TIGR01527 arch_NMN_Atrans nico 98.9 2.1E-08 4.5E-13 75.5 9.7 34 132-165 122-155 (165)
20 cd02166 NMNAT_Archaea Nicotina 98.8 7.9E-08 1.7E-12 72.2 10.6 34 133-166 125-158 (163)
21 cd02169 Citrate_lyase_ligase C 98.7 2.6E-08 5.7E-13 81.5 7.0 131 2-161 152-297 (297)
22 smart00764 Citrate_ly_lig Citr 98.7 9.8E-08 2.1E-12 73.0 9.2 30 132-161 151-182 (182)
23 PRK01153 nicotinamide-nucleoti 98.7 3.1E-07 6.7E-12 69.7 10.7 34 132-165 125-158 (174)
24 PRK13964 coaD phosphopantethei 98.4 7.1E-07 1.5E-11 65.4 6.8 100 2-147 41-140 (140)
25 PRK05379 bifunctional nicotina 98.3 2.3E-06 5E-11 71.4 8.1 34 131-164 135-171 (340)
26 PRK13793 nicotinamide-nucleoti 98.1 9.6E-06 2.1E-10 62.5 7.0 33 132-164 134-166 (196)
27 TIGR00124 cit_ly_ligase [citra 98.1 4.2E-06 9.1E-11 69.6 4.7 136 2-165 177-330 (332)
28 cd02170 cytidylyltransferase c 98.0 2.7E-05 5.9E-10 56.4 6.7 88 3-144 47-134 (136)
29 PF08218 Citrate_ly_lig: Citra 97.9 1.1E-05 2.5E-10 60.8 4.2 131 3-161 38-182 (182)
30 cd02167 NMNAT_NadR Nicotinamid 97.9 7.8E-05 1.7E-09 55.7 7.8 33 2-34 42-74 (158)
31 COG3053 CitC Citrate lyase syn 97.3 0.00082 1.8E-08 54.6 6.9 34 131-164 301-336 (352)
32 cd02064 FAD_synthetase_N FAD s 96.9 0.007 1.5E-07 46.0 8.0 16 132-147 144-159 (180)
33 PRK08099 bifunctional DNA-bind 96.7 0.0082 1.8E-07 51.3 7.8 30 3-32 103-132 (399)
34 cd02171 G3P_Cytidylyltransfera 96.0 0.057 1.2E-06 38.5 7.8 14 132-145 115-128 (129)
35 PRK00777 phosphopantetheine ad 95.8 0.018 4E-07 42.7 4.9 19 3-21 47-65 (153)
36 PF01747 ATP-sulfurylase: ATP- 95.2 0.32 7E-06 38.2 10.0 32 132-163 181-213 (215)
37 PRK07143 hypothetical protein; 95.0 0.17 3.7E-06 41.3 8.1 16 132-147 148-163 (279)
38 TIGR00083 ribF riboflavin kina 94.4 0.25 5.5E-06 40.5 7.9 16 132-147 142-157 (288)
39 PRK05627 bifunctional riboflav 94.3 0.35 7.6E-06 39.9 8.5 17 131-147 158-174 (305)
40 cd00517 ATPS ATP-sulfurylase. 93.3 1.5 3.3E-05 36.9 10.8 33 131-163 319-352 (353)
41 TIGR01526 nadR_NMN_Atrans nico 93.0 0.1 2.3E-06 43.3 3.3 29 3-31 45-74 (325)
42 cd02174 CCT CTP:phosphocholine 92.2 1.3 2.7E-05 32.8 8.0 49 4-73 51-99 (150)
43 PRK04149 sat sulfate adenylylt 91.6 4.3 9.3E-05 34.8 11.5 34 131-164 346-380 (391)
44 TIGR01518 g3p_cytidyltrns glyc 91.2 0.56 1.2E-05 33.2 5.0 21 121-143 105-125 (125)
45 PRK05537 bifunctional sulfate 89.1 7 0.00015 35.1 11.1 32 132-163 351-383 (568)
46 PRK13660 hypothetical protein; 84.9 15 0.00033 28.0 12.1 123 21-162 42-176 (182)
47 cd02173 ECT CTP:phosphoethanol 79.0 4.4 9.4E-05 29.9 4.5 50 4-74 51-100 (152)
48 COG1056 NadR Nicotinamide mono 75.0 4.2 9.2E-05 30.8 3.5 33 131-163 126-159 (172)
49 TIGR00125 cyt_tran_rel cytidyl 74.2 4 8.7E-05 24.9 2.8 20 4-23 46-65 (66)
50 PRK15364 pathogenicity island 73.9 3.9 8.5E-05 31.1 3.0 20 147-166 93-112 (196)
51 PRK13670 hypothetical protein; 73.0 1.8 4E-05 36.9 1.3 32 132-163 199-232 (388)
52 TIGR02199 rfaE_dom_II rfaE bif 72.1 5.6 0.00012 28.9 3.5 27 116-144 117-143 (144)
53 KOG0564 5,10-methylenetetrahyd 70.9 5.1 0.00011 35.3 3.5 33 21-53 114-146 (590)
54 PRK13671 hypothetical protein; 68.9 4.2 9.2E-05 33.5 2.5 30 133-162 195-224 (298)
55 cd02164 PPAT_CoAS phosphopante 67.1 8.1 0.00018 28.2 3.5 18 5-22 49-66 (143)
56 PF02201 SWIB: SWIB/MDM2 domai 65.4 2.8 6.1E-05 27.1 0.7 18 154-171 26-43 (76)
57 COG2046 MET3 ATP sulfurylase ( 63.5 8.6 0.00019 32.7 3.3 32 132-163 343-375 (397)
58 COG0196 RibF FAD synthase [Coe 63.3 4.5 9.7E-05 33.5 1.6 15 133-147 160-174 (304)
59 PTZ00308 ethanolamine-phosphat 60.9 56 0.0012 27.6 7.8 13 4-16 58-70 (353)
60 PLN02406 ethanolamine-phosphat 56.9 33 0.00071 29.8 5.8 51 4-71 100-150 (418)
61 KOG1946 RNA polymerase I trans 54.8 8.3 0.00018 30.8 1.7 40 131-171 103-142 (240)
62 smart00151 SWIB SWI complex, B 53.5 11 0.00025 24.3 2.0 18 153-170 25-42 (77)
63 PLN02388 phosphopantetheine ad 52.2 8.6 0.00019 29.3 1.4 15 131-145 152-166 (177)
64 PF03433 EspA: EspA-like secre 51.8 4.8 0.0001 30.8 0.0 16 151-166 97-112 (188)
65 COG1019 Predicted nucleotidylt 50.3 26 0.00056 26.1 3.6 51 93-143 92-146 (158)
66 PF06908 DUF1273: Protein of u 49.7 76 0.0017 24.0 6.3 110 37-160 55-174 (177)
67 PF05636 HIGH_NTase1: HIGH Nuc 49.0 5.7 0.00012 34.0 0.0 30 132-161 200-231 (388)
68 COG0615 TagD Cytidylyltransfer 44.0 40 0.00087 24.7 3.8 15 2-16 47-61 (140)
69 COG1323 Predicted nucleotidylt 42.7 14 0.0003 31.4 1.3 33 132-164 203-237 (358)
70 PTZ00308 ethanolamine-phosphat 39.1 57 0.0012 27.6 4.5 49 4-73 241-289 (353)
71 PF07875 Coat_F: Coat F domain 36.5 14 0.0003 22.8 0.4 39 132-170 25-63 (64)
72 COG4474 Uncharacterized protei 36.0 1.9E+02 0.0042 21.9 7.0 82 11-108 32-118 (180)
73 PF10828 DUF2570: Protein of u 35.4 49 0.0011 22.9 3.0 31 133-163 77-107 (110)
74 PF02826 2-Hacid_dh_C: D-isome 30.6 2.2E+02 0.0049 21.0 6.3 62 86-147 84-145 (178)
75 PRK01170 phosphopantetheine ad 29.6 1.1E+02 0.0024 25.6 4.6 13 130-142 126-138 (322)
76 TIGR03765 ICE_PFL_4695 integra 27.2 39 0.00084 23.5 1.3 33 64-101 26-60 (105)
77 cd00307 RuBisCO_small_like Rib 26.8 67 0.0014 21.3 2.4 24 41-73 48-71 (84)
78 PHA02047 phage lambda Rz1-like 25.1 94 0.002 21.3 2.8 31 133-163 65-96 (101)
79 PRK00979 tetrahydromethanopter 24.9 84 0.0018 26.1 3.1 58 7-75 161-231 (308)
80 PF11072 DUF2859: Protein of u 24.4 44 0.00096 24.5 1.3 33 63-100 63-97 (142)
81 PRK10391 oriC-binding nucleoid 23.7 75 0.0016 20.4 2.1 21 141-161 48-70 (71)
82 PLN02289 ribulose-bisphosphate 23.6 54 0.0012 24.8 1.6 23 44-75 142-164 (176)
83 KOG0037 Ca2+-binding protein, 22.7 1E+02 0.0022 24.3 3.1 32 129-163 136-167 (221)
84 PF08483 IstB_IS21_ATP: IstB-l 22.5 73 0.0016 16.9 1.6 11 5-15 11-21 (30)
85 PF12728 HTH_17: Helix-turn-he 21.8 1.6E+02 0.0035 16.6 3.3 33 132-164 11-50 (51)
86 CHL00130 rbcS ribulose-1,5-bis 21.7 65 0.0014 23.4 1.7 24 44-76 68-91 (138)
87 PF06194 Phage_Orf51: Phage Co 21.0 73 0.0016 20.7 1.6 18 154-171 57-74 (80)
88 KOG2406 MADS box transcription 20.8 74 0.0016 28.4 2.1 117 39-164 97-229 (635)
89 PRK10144 formate-dependent nit 20.8 1.4E+02 0.0029 21.5 3.2 23 137-164 64-86 (126)
90 cd03527 RuBisCO_small Ribulose 20.5 1E+02 0.0022 21.2 2.4 24 41-73 63-86 (99)
91 PF03564 DUF1759: Protein of u 20.5 1.1E+02 0.0023 21.7 2.7 48 4-54 23-70 (145)
92 COG4753 Response regulator con 20.5 2.1E+02 0.0045 25.4 4.8 52 12-74 38-89 (475)
93 PRK05096 guanosine 5'-monophos 20.4 1.3E+02 0.0029 25.4 3.5 21 34-54 132-152 (346)
94 TIGR03147 cyt_nit_nrfF cytochr 20.4 1.4E+02 0.003 21.5 3.1 23 137-164 64-86 (126)
95 PF11396 DUF2874: Protein of u 20.3 60 0.0013 19.3 1.1 14 151-164 6-19 (61)
No 1
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=100.00 E-value=1e-41 Score=262.64 Aligned_cols=149 Identities=29% Similarity=0.450 Sum_probs=129.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCCC
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWM 83 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W~ 83 (173)
..+++++|++||++|++++|++.|+++|++++++|||++||++|+++||+. +++||||+|++.+|++|++|
T Consensus 44 ~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~p~~--------~~~~iiG~D~l~~l~~W~~~- 114 (193)
T TIGR00482 44 EAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPSYTIDTLKHLKKKYPDV--------ELYFIIGADALRSFPLWKDW- 114 (193)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCCCHHHHHHHHHHHCCCC--------eEEEEEcHHHhhhhccccCH-
Confidence 458999999999999999999999999999999999999999999999975 89999999999999976655
Q ss_pred cchHHHHhhcccEEEEcCCCCChhhhh-hhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 030697 84 PEQVWTICRNFGVICIRREGQDVEKII-SDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIR 162 (173)
Q Consensus 84 ~~~~~~l~~~~~liv~~R~g~~~~~~~-~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~ 162 (173)
++|++.|+|+|++|+|++.+... .....+ ....++.+++ .+..+||||+||+++++|+++.++||++|++||+
T Consensus 115 ----~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~-~~~~~i~~~~-~~~~~iSST~IR~~l~~g~~~~~lvP~~V~~YI~ 188 (193)
T TIGR00482 115 ----QELLELVHLVIVPRPGYTLDKALLEKAILR-MHHGNLTLLH-NPRVPISSTEIRQRIRQGKSIEYLLPDPVIKYIK 188 (193)
T ss_pred ----HHHHHhCcEEEEeCCCCCcchhhhHHHHhc-ccCCcEEEEc-CCccccCHHHHHHHHHcCCCchhhCCHHHHHHHH
Confidence 99999999999999998643211 100001 1234688885 6778999999999999999999999999999999
Q ss_pred hCCCC
Q 030697 163 ESRLY 167 (173)
Q Consensus 163 ~~~LY 167 (173)
+|+||
T Consensus 189 ~~~LY 193 (193)
T TIGR00482 189 QHGLY 193 (193)
T ss_pred HhCCC
Confidence 99999
No 2
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=100.00 E-value=2.9e-41 Score=267.35 Aligned_cols=167 Identities=69% Similarity=1.192 Sum_probs=136.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+..++++||++||++|+++++++.|+++|+++++++||++||++|+++||..++-+.+..+++||||+|++.+|++|++
T Consensus 70 k~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~ 149 (236)
T PLN02945 70 KKGLASAEHRIQMCQLACEDSDFIMVDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDLLESFSTPGV 149 (236)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCCeEecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhHHHhcCCCCc
Confidence 55789999999999999999999999999999999999999999999999521110001238999999999999999888
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYI 161 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI 161 (173)
|++++.++|++.|+|+|++|+|++.+........+.....++.+++..+..+||||+||+++++|+++.++||++|.+||
T Consensus 150 W~~~~~~~l~~~~~~vV~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~i~~lvP~~V~~YI 229 (236)
T PLN02945 150 WIPDQVRTICRDYGVVCIRREGQDVEKLVSQDEILNENRGNILVVDDLVPNSISSTRVRECISRGLSVKYLTPDGVIDYI 229 (236)
T ss_pred CCHHHHHHHHHhCCEEEEeCCCCCHHHHhhcchhhhhCcCCEEEecccccccccHHHHHHHHHcCCCchhhCCHHHHHHH
Confidence 98865566999999999999998764322111223333456777743445899999999999999999999999999999
Q ss_pred HhCCCCC
Q 030697 162 RESRLYL 168 (173)
Q Consensus 162 ~~~~LY~ 168 (173)
++|+||.
T Consensus 230 ~~~~LY~ 236 (236)
T PLN02945 230 KEHGLYM 236 (236)
T ss_pred HHcCCCC
Confidence 9999994
No 3
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=6.9e-41 Score=265.54 Aligned_cols=154 Identities=23% Similarity=0.266 Sum_probs=128.4
Q ss_pred CCCCCCHHHHHHHHHHHhcCC----CceeechhhhcCCCccchHHHHHHHHHHh-hhcccccCCCceEEEEeehhhhhhC
Q 030697 2 IQGLISAEHRINLCNLACKSS----DFIMVDPWEANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGSDLLESF 76 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~----~~~~v~~~E~~~~~~syTi~tl~~l~~~~-p~~~~~~~~~~~~~fliG~D~l~~l 76 (173)
|+..+++++|++||++|+++. ++|.|+++|++++|++||++||++|+++| |+. +|+||||+|++.+|
T Consensus 65 K~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~Ei~~~g~syTidTL~~l~~~~~p~~--------~~~fiiG~D~l~~l 136 (243)
T PRK06973 65 KADVSAAEHRLAMTRAAAASLVLPGVTVRVATDEIEHAGPTYTVDTLARWRERIGPDA--------SLALLIGADQLVRL 136 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCceEEEeHhhhhCCCCCcHHHHHHHHHHHcCCCC--------CEEEEEchhhHhhc
Confidence 556889999999999999964 48999999999999999999999999999 664 89999999999999
Q ss_pred CCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhh-----------hHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHc
Q 030697 77 AIPGFWMPEQVWTICRNFGVICIRREGQDVEKIIS-----------DNEILDKNKGNIKLVDELVPNQISSTRIRDCICR 145 (173)
Q Consensus 77 ~~w~~W~~~~~~~l~~~~~liv~~R~g~~~~~~~~-----------~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~ 145 (173)
++|++| ++|+++|+|+|+.|+|++...... ....+.....+.+++...+..+||||+||++++.
T Consensus 137 ~~W~~~-----~~L~~~~~lvV~~R~g~~~~~~~~~~~~~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ISST~IR~~l~~ 211 (243)
T PRK06973 137 DTWRDW-----RRLFDYAHLCAATRPGFDLGAASPAVAAEIAARQADADVLQATPAGHLLIDTTLAFDLSATDIRAHLRA 211 (243)
T ss_pred CCcccH-----HHHHHhCCEEEEECCCCCcccchhHHHHHHhhhhhhhhhhhcCCCceEEEcCCCcccccHHHHHHHHHc
Confidence 977777 999999999999999976432100 0111212223345554466789999999999999
Q ss_pred C--------CCCCCCChHHHHHHHHhCCCCC
Q 030697 146 G--------LSIKYLTEDKVIDYIRESRLYL 168 (173)
Q Consensus 146 g--------~~~~~lvp~~V~~yI~~~~LY~ 168 (173)
| +++.++||++|++||++|+||.
T Consensus 212 g~~~~~~~~~~i~~lvP~~V~~YI~~~~LY~ 242 (243)
T PRK06973 212 CIARRAQVPDASAEHVPAAVWAYILQHRLYH 242 (243)
T ss_pred CCCcccccCCChhHhCCHHHHHHHHHcCCCC
Confidence 9 9999999999999999999995
No 4
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=1.6e-40 Score=257.80 Aligned_cols=151 Identities=27% Similarity=0.386 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCCC
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWM 83 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W~ 83 (173)
..+++++|++|+++|+++.+++.|+++|+++++++||++||++|++.||+. +++||||+|++.+|++|++|
T Consensus 51 ~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~p~~--------~~~fiiG~D~l~~l~~W~~~- 121 (203)
T PRK00071 51 PLAPLEHRLAMLELAIADNPRFSVSDIELERPGPSYTIDTLRELRARYPDV--------ELVFIIGADALAQLPRWKRW- 121 (203)
T ss_pred CCCCHHHHHHHHHHHhcCCCceEEeHHHHhCCCCCCHHHHHHHHHHHCCCC--------cEEEEEcHHHhhhcccccCH-
Confidence 578999999999999999999999999999999999999999999999986 89999999999999976655
Q ss_pred cchHHHHhhcccEEEEcCCCCChhhhh-hhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 030697 84 PEQVWTICRNFGVICIRREGQDVEKII-SDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIR 162 (173)
Q Consensus 84 ~~~~~~l~~~~~liv~~R~g~~~~~~~-~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~ 162 (173)
++|++.++++|++|+|++..... .....+....+++.+++ .+..+||||+||+++++|+++.++||++|.+||+
T Consensus 122 ----~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~YI~ 196 (203)
T PRK00071 122 ----EEILDLVHFVVVPRPGYPLEALALPALQQLLEAAGAITLLD-VPLLAISSTAIRERIKEGRPIRYLLPEAVLDYIE 196 (203)
T ss_pred ----HHHHHhCcEEEEeCCCCCccccchhHHHHhhccCCCEEEEe-CCCCccCHHHHHHHHHcCCChhHhCCHHHHHHHH
Confidence 99999999999999997643211 01111212246788885 7778999999999999999999999999999999
Q ss_pred hCCCCC
Q 030697 163 ESRLYL 168 (173)
Q Consensus 163 ~~~LY~ 168 (173)
+|+||+
T Consensus 197 ~~~LY~ 202 (203)
T PRK00071 197 KHGLYR 202 (203)
T ss_pred HhCccC
Confidence 999996
No 5
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=100.00 E-value=2.9e-40 Score=259.80 Aligned_cols=166 Identities=44% Similarity=0.799 Sum_probs=135.4
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcc---------cc--cCCCceEEEEeeh
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAG---------LI--STESLKVMLVCGS 70 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~---------~~--~~~~~~~~fliG~ 70 (173)
|+..+++++|++||++|++++|++.|+++|+.+++++||++||+++++.||+.- |- +....+++||||+
T Consensus 49 k~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~~~~~~syT~~TL~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~fiiG~ 128 (225)
T cd09286 49 KKGLASAKHRVAMCRLAVQSSDWIRVDDWESLQPEWMRTAKVLRHHREEINNKYGGIEGAAKRVLDGSRREVKIMLLCGA 128 (225)
T ss_pred CCCCCCHHHHHHHHHHHHccCCCEEEEehhccCCccccHHHHHHHHHHHhcccccccccccccccccccCCceEEEEecH
Confidence 556889999999999999999999999999999999999999999999998300 00 0001389999999
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCC
Q 030697 71 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIK 150 (173)
Q Consensus 71 D~l~~l~~w~~W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~ 150 (173)
|++.+|++|+.|++...++|++.|+|+|+.|+|++..........+..+..++.+++.....+||||+||+++++|+++.
T Consensus 129 D~l~~l~~~~~W~~~~~e~ll~~~~~vv~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~~~ 208 (225)
T cd09286 129 DLLESFGIPGLWKDADLEEILGEFGLVVVERTGSDPENFIASSDILRKYQDNIHLVKDWIPNDISSTKVRRALRRGMSVK 208 (225)
T ss_pred hHHHhcCCCCcCCHHHHHHHHHhCCEEEEeCCCCCHHHhhhccchhHHhhCCEEEEecCcccccChHHHHHHHHcCCCch
Confidence 99999999888985224999999999999999987543211111233444678877533456999999999999999999
Q ss_pred CCChHHHHHHHHhCCCC
Q 030697 151 YLTEDKVIDYIRESRLY 167 (173)
Q Consensus 151 ~lvp~~V~~yI~~~~LY 167 (173)
++||++|.+||++|+||
T Consensus 209 ~llp~~V~~YI~~~~LY 225 (225)
T cd09286 209 YLLPDPVIEYIEQHQLY 225 (225)
T ss_pred hcCCHHHHHHHHHcCCC
Confidence 99999999999999999
No 6
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=3.9e-40 Score=253.33 Aligned_cols=147 Identities=31% Similarity=0.427 Sum_probs=127.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHh-hhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~-p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
++.+|++||++||++|+++.|.+.|+++|+++.|+|||+|||+++++++ |+. +||||||+|++.+|++|++
T Consensus 49 ~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~~r~g~sYT~dTl~~~~~~~~p~~--------~~~fIiGaD~l~~l~~W~~ 120 (197)
T COG1057 49 KELASAEHRLAMLELAIEDNPRFEVSDREIKRGGPSYTIDTLEHLRQEYGPDV--------ELYFIIGADNLASLPKWYD 120 (197)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCcceeHHHHHcCCCcchHHHHHHHHHHhCCCC--------cEEEEEehHHhhhhhhhhh
Confidence 4689999999999999999999999999999999999999999999555 553 8999999999999998777
Q ss_pred CCcchHHHHhhcccEEEEcCCCCC-hhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQD-VEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDY 160 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~-~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~y 160 (173)
| ++|+++|+|+|++|+|+. .... .... ...+.++ ..+..+||||.||+++..|+++.+++|++|.+|
T Consensus 121 ~-----~ell~~~~~vv~~Rp~~~~~~~~-----~~~~-~~~~~~~-~~~~~~ISSt~IR~~~~~~~~~~~llP~~V~~Y 188 (197)
T COG1057 121 W-----DELLKLVTFVVAPRPGYGELELS-----LLSS-GGAIILL-DLPRLDISSTEIRERIRRGASVDYLLPDSVLSY 188 (197)
T ss_pred H-----HHHHHhCCEEEEecCCchhhhhh-----hhcC-CceEEEc-cCccccCchHHHHHHHhCCCCchhcCCHHHHHH
Confidence 7 999999999999999984 2211 1111 2345666 478899999999999999999999999999999
Q ss_pred HHhCCCCCC
Q 030697 161 IRESRLYLN 169 (173)
Q Consensus 161 I~~~~LY~~ 169 (173)
|.+|+||..
T Consensus 189 I~~~~LY~~ 197 (197)
T COG1057 189 IEERGLYRG 197 (197)
T ss_pred HHHhccccC
Confidence 999999963
No 7
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=100.00 E-value=2.4e-37 Score=238.08 Aligned_cols=148 Identities=29% Similarity=0.343 Sum_probs=128.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCCC
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWM 83 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W~ 83 (173)
..+++++|++||++++++.+++.|+++|+++++++||++||+++++.||+. +++||||+|++.+|++|+.|
T Consensus 45 ~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~~~t~~tl~~l~~~~p~~--------~~~~liG~D~l~~~~~W~~~- 115 (192)
T cd02165 45 KPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGPSYTIDTLEELRERYPNA--------ELYFIIGSDNLIRLPKWYDW- 115 (192)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCCCCHHHHHHHHHHhccCC--------CEEEEEcHHHhhhcccccCH-
Confidence 678999999999999999999999999999999999999999999999975 89999999999999965444
Q ss_pred cchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHHHh
Q 030697 84 PEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRE 163 (173)
Q Consensus 84 ~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~ 163 (173)
++|++.++++|++|+|++....... .......++.+++ .+..+||||+||++++.|+++.++||++|.+||++
T Consensus 116 ----~~i~~~~~~iv~~R~g~~~~~~~~~--~~~~~~~~~~~~~-~~~~~iSST~IR~~~~~g~~~~~lvp~~V~~yI~~ 188 (192)
T cd02165 116 ----EELLSLVHLVVAPRPGYPIEDASLE--KLLLPGGRIILLD-NPLLNISSTEIRERLKNGKSIRYLLPPAVADYIKE 188 (192)
T ss_pred ----HHHHHhCcEEEEeCCCCCcccchhh--hhccCCCcEEEec-CCccccCHHHHHHHHHcCCChhHhCCHHHHHHHHH
Confidence 8999999999999999764322111 0001234677774 67789999999999999999999999999999999
Q ss_pred CCCC
Q 030697 164 SRLY 167 (173)
Q Consensus 164 ~~LY 167 (173)
|+||
T Consensus 189 ~~lY 192 (192)
T cd02165 189 HGLY 192 (192)
T ss_pred ccCC
Confidence 9999
No 8
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=6.1e-37 Score=232.47 Aligned_cols=128 Identities=23% Similarity=0.252 Sum_probs=116.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCC--CceeechhhhcC---CCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhC
Q 030697 2 IQGLISAEHRINLCNLACKSS--DFIMVDPWEANQ---SGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESF 76 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~--~~~~v~~~E~~~---~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l 76 (173)
||..+++++|++|+++|++++ |++.|+++|+++ ++++||++||++|+++||+. +++||||+|++.+|
T Consensus 42 ~k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~~~~~~~yT~~tl~~l~~~~p~~--------~~~~iiG~D~l~~l 113 (174)
T PRK08887 42 GKTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELYAPDESVTTYALLTRLQELYPEA--------DLTFVIGPDNFLKF 113 (174)
T ss_pred cCCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhccCCCCcchHHHHHHHHHHCCCC--------eEEEEEccchHHHH
Confidence 457789999999999999985 799999999987 78899999999999999986 89999999999999
Q ss_pred CCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHH
Q 030697 77 AIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDK 156 (173)
Q Consensus 77 ~~w~~W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~ 156 (173)
++|++| ++|++.|.++|++| ..+||||+||++++.|+++.++||++
T Consensus 114 ~~W~~~-----~~i~~~~~l~~~~~-----------------------------~~~ISST~IR~~l~~g~~i~~lvp~~ 159 (174)
T PRK08887 114 AKFYKA-----DEITQRWTVMACPE-----------------------------KVPIRSTDIRNALQNGKDISHLTTPG 159 (174)
T ss_pred HHhCCH-----HHHHhhCeEEEeCC-----------------------------CCCcCHHHHHHHHHcCCChhHhCCHH
Confidence 976666 89999999998754 13799999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC
Q 030697 157 VIDYIRESRLYLNSN 171 (173)
Q Consensus 157 V~~yI~~~~LY~~~~ 171 (173)
|.+||++|+||++++
T Consensus 160 V~~yI~~~~LY~~~~ 174 (174)
T PRK08887 160 VARLLKEHQLYTEPS 174 (174)
T ss_pred HHHHHHHccccCCCC
Confidence 999999999998764
No 9
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=100.00 E-value=1.4e-35 Score=246.41 Aligned_cols=138 Identities=29% Similarity=0.331 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCCCc
Q 030697 5 LISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMP 84 (173)
Q Consensus 5 ~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W~~ 84 (173)
..++++|++||++|++++|++.|+++|+++++++||++||++|+++||+. +++||||+|++.+|++|+.|
T Consensus 49 ~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syt~~tl~~l~~~~p~~--------~~~~iiG~D~~~~l~~W~~~-- 118 (342)
T PRK07152 49 ASNGEHRLNMLKLALKNLPKMEVSDFEIKRQNVSYTIDTIKYFKKKYPND--------EIYFIIGSDNLEKFKKWKNI-- 118 (342)
T ss_pred CCCHHHHHHHHHHHHhhCCCeEEeHHHHhCCCCCcHHHHHHHHHHhCCCC--------cEEEEecHHHhhhcccccCH--
Confidence 34459999999999999999999999999999999999999999999986 89999999999999976665
Q ss_pred chHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHHHhC
Q 030697 85 EQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 164 (173)
Q Consensus 85 ~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~ 164 (173)
++|++.|+|+|++|+|++.... +. ..++.+++ .+..+||||+||++++.|+ ||++|.+||++|
T Consensus 119 ---~~l~~~~~~iv~~R~g~~~~~~------~~--~~~i~~~~-~~~~~iSST~IR~~~~~~~-----vP~~V~~YI~~~ 181 (342)
T PRK07152 119 ---EEILKKVQIVVFKRKKNINKKN------LK--KYNVLLLK-NKNLNISSTKIRKGNLLGK-----LDPKVNDYINEN 181 (342)
T ss_pred ---HHHHHhCCEEEEECCCCCcccc------cc--cCcEEEec-CCccccCHHHHHHHHHcCC-----CCHHHHHHHHHc
Confidence 9999999999999999764321 11 13677885 6778999999999999886 999999999999
Q ss_pred CCCCC
Q 030697 165 RLYLN 169 (173)
Q Consensus 165 ~LY~~ 169 (173)
+||..
T Consensus 182 ~LY~e 186 (342)
T PRK07152 182 FLYLE 186 (342)
T ss_pred Ccccc
Confidence 99974
No 10
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=99.96 E-value=2e-29 Score=191.18 Aligned_cols=170 Identities=44% Similarity=0.796 Sum_probs=142.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhc-ccc---c--CCCceEEEEeehhhhhh
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEA-GLI---S--TESLKVMLVCGSDLLES 75 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~-~~~---~--~~~~~~~fliG~D~l~~ 75 (173)
||+++++.||+.|+++|++...++.+++||.-|....-|++.|+|.++..... +++ + -.+..+-+++|+|.+.+
T Consensus 57 KKgLipa~hrv~~~ElAt~~Skwl~vD~weslQ~~wt~T~~vlrHhqe~~~~kr~~~~~~~~~k~~~kVmLlcG~Dlies 136 (234)
T KOG3199|consen 57 KKGLIPAYHRVRMVELATETSKWLMVDGWESLQKEWTRTVKVLRHHQEELNRKRGGTELSPGTKSDVKVMLLCGGDLIES 136 (234)
T ss_pred ccccchhhhHHHHHHhhhccccceecchhhhccHHHhhhhHHHHHHHHHHHHHhccccccccccCCceEEEEeCchHHHh
Confidence 78999999999999999999999999999999999999999999998754322 111 1 12457999999999999
Q ss_pred CCCCCC-CCcchHHHHhhcccEEEEcCCCCChhhhhhhHH-HhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCC
Q 030697 76 FAIPGF-WMPEQVWTICRNFGVICIRREGQDVEKIISDNE-ILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLT 153 (173)
Q Consensus 76 l~~w~~-W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~-~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lv 153 (173)
|..|+- |+..++..|+..+.++|+.|.|.+...++...+ .+......+.+.++..+++||||.||+++++|+++++++
T Consensus 137 f~~p~~~w~~~dl~~i~~~yGl~cv~r~gsD~~~~i~~~d~i~~~~~~~l~ikn~~~~N~ISStklr~ai~r~~SVkYl~ 216 (234)
T KOG3199|consen 137 FGEPNLVWKDEDLRTILGEYGLVCVTREGSDVENFLSSHDIILEKRRNILHIKNEIVPNDISSTKLRQAIRRGQSVKYLT 216 (234)
T ss_pred ccCCCCCcchhhHHHHHhhCcEEEEeccCCCHHHHHhccHHHHHhhcceEEEeeeeecCCcchHHHHHHHHcCCeeEeeC
Confidence 998865 888889999999999999999999888766533 344434455555555568999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCCCC
Q 030697 154 EDKVIDYIRESRLYLNSN 171 (173)
Q Consensus 154 p~~V~~yI~~~~LY~~~~ 171 (173)
|+.|.+||++|+||...+
T Consensus 217 PD~Vi~yI~~h~LY~~~~ 234 (234)
T KOG3199|consen 217 PDSVIEYIREHNLYSSES 234 (234)
T ss_pred cHHHHHHHHHhhchhccC
Confidence 999999999999998753
No 11
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.88 E-value=7.2e-23 Score=152.67 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=90.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+..++.++|++|+++|++++|+|+|+++| +||++|+++++. .+||+|.|++.+
T Consensus 39 k~~~~~~~~R~~m~~~a~~~~~~~~v~~~e------~yt~dt~~~l~~--------------~~~i~G~~~~~~------ 92 (155)
T TIGR01510 39 KKPLFSLEERVELIKDATKHLPNVRVDVFD------GLLVDYAKELGA--------------TFIVRGLRAATD------ 92 (155)
T ss_pred CCCCcCHHHHHHHHHHHHhhCCCeEEcCcc------chHHHHHHHcCC--------------CEEEecCcchhh------
Confidence 567899999999999999999999999999 699999998862 268888887644
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYI 161 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI 161 (173)
| ++++++++ ++|.. . .....++++...+..+||||.||++++.|+++.++||++|.+||
T Consensus 93 ~-----~~~~~~~~---~~r~~---~----------~~~~~i~~~~~~~~~~iSST~IR~~i~~g~~~~~lvP~~V~~YI 151 (155)
T TIGR01510 93 F-----EYELQMAL---MNKHL---A----------PEIETVFLMASPEYAFVSSSLVKEIASFGGDVSNLVPPAVARRL 151 (155)
T ss_pred H-----HHHHHHHh---hCccc---c----------cCCcEEEEeCCcchhhccHHHHHHHHHcCCChhHHCCHHHHHHH
Confidence 5 56676666 45521 0 00124556542334599999999999999999999999999999
Q ss_pred HhC
Q 030697 162 RES 164 (173)
Q Consensus 162 ~~~ 164 (173)
+++
T Consensus 152 ~~~ 154 (155)
T TIGR01510 152 KAK 154 (155)
T ss_pred HHh
Confidence 875
No 12
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.87 E-value=1.1e-22 Score=151.32 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=92.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|++.+++++|++|+++|+++.|++.|+++| +||++|+++++. + +|++|.|++.+
T Consensus 39 k~~~~~~~~R~~ml~~a~~~~~~~~v~~~e------s~t~~~l~~l~~-------------~-~~i~G~d~~~~------ 92 (153)
T cd02163 39 KKPLFSLEERVELIREATKHLPNVEVDGFD------GLLVDFARKHGA-------------N-VIVRGLRAVSD------ 92 (153)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCCEEecCCc------chHHHHHHHcCC-------------C-EEEECCcchhh------
Confidence 567899999999999999999999999986 899999987753 2 68999998766
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCC-CcccHHHHHHHHHcCCCCCCCChHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDY 160 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~-~~ISST~IR~~l~~g~~~~~lvp~~V~~y 160 (173)
| +.++ ++++++|+|... ...++++. .+. .+||||.||++++.|+++.++||++|.+|
T Consensus 93 ~-----e~~~---~~~~~~r~~~~~-------------~~~i~~~~-~~~~~~iSST~IR~~~~~g~~i~~lvP~~V~~y 150 (153)
T cd02163 93 F-----EYEF---QMAGMNRKLAPE-------------IETVFLMA-SPEYSFISSSLVKEIARFGGDVSGFVPPVVAKA 150 (153)
T ss_pred H-----HHHH---HHHHhCCCCCCC-------------CcEEEEeC-CCccceecHHHHHHHHHcCCChhHhCCHHHHHH
Confidence 4 3343 555689987421 12466664 444 46999999999999999999999999999
Q ss_pred HHh
Q 030697 161 IRE 163 (173)
Q Consensus 161 I~~ 163 (173)
|++
T Consensus 151 I~~ 153 (153)
T cd02163 151 LKE 153 (153)
T ss_pred HhC
Confidence 974
No 13
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.86 E-value=1.5e-21 Score=146.10 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=91.5
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|++.+++++|++|+++|+++.|++.|+++| +||++|++.++. -+|+.|.|+ |+.
T Consensus 41 k~~~~~~~~R~~ml~~a~~~~~~v~v~~~e------~~t~~~~~~~~~--------------~~~~~gl~~------w~d 94 (159)
T PRK00168 41 KKPLFSLEERVELIREATAHLPNVEVVSFD------GLLVDFAREVGA--------------TVIVRGLRA------VSD 94 (159)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCCEEEecCC------ccHHHHHHHcCC--------------CEEEecCcc------hhh
Confidence 667899999999999999999999999987 799999976642 257888774 334
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYI 161 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI 161 (173)
| +.+++.+. ++|++.+. .+.++++......+||||.||++++.|+++.++||++|.+||
T Consensus 95 ~-----e~~~~~~~---~~r~~~~~-------------~~~i~~~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI 153 (159)
T PRK00168 95 F-----EYEFQMAG---MNRKLAPE-------------IETVFLMPSPEYSFISSSLVKEVARLGGDVSGFVPPAVAKAL 153 (159)
T ss_pred H-----HHHHHHHH---hCCCCCCC-------------CcEEEEeCCCCcceecHHHHHHHHHcCCChhHHCCHHHHHHH
Confidence 6 55565554 88887531 134556542333699999999999999999999999999999
Q ss_pred HhC
Q 030697 162 RES 164 (173)
Q Consensus 162 ~~~ 164 (173)
.++
T Consensus 154 ~~~ 156 (159)
T PRK00168 154 KEK 156 (159)
T ss_pred HHH
Confidence 875
No 14
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.76 E-value=8.4e-19 Score=128.78 Aligned_cols=115 Identities=34% Similarity=0.478 Sum_probs=87.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
+..+++++|++|+++++.+.+++.|+++|..+. ++.+|+. +++||+|+|++.+|+. |
T Consensus 43 ~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~------------~~~~~~~--------~~~~v~g~D~~~~~~~---~ 99 (157)
T PF01467_consen 43 KPIFSFEERLEMLRAAFKDDPNIEVDDWELEQD------------KKKYPDV--------KIYFVIGADNLRNFPK---W 99 (157)
T ss_dssp SSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSS------------HHHSTSS--------CEEEEEECTHHEEEEE---S
T ss_pred cccCcHHHHHHHHHHHHhhcCCccccchhHHhH------------hhhcccc--------ccceeccCCceeeecC---C
Confidence 468999999999999999999999999999876 6778875 8999999999999995 5
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHH
Q 030697 83 MPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDC 142 (173)
Q Consensus 83 ~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~ 142 (173)
++. +++++.++++|+.|++............+......+.++......+||||+||++
T Consensus 100 ~~~--~~~~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~~ 157 (157)
T PF01467_consen 100 RDW--QEILKEVNIIVVSRGGDDPIETISDDEILEKYPLGIIFILDPPRNEISSTEIRER 157 (157)
T ss_dssp TTH--HHHHHHHHEEEEEHHHTTTHEEEEHCHHHHHTTCEEEEEEEGGGTTSSHHHHHHH
T ss_pred CcH--HHHHHhCCEEEEEcCCCCccchhhhccccccccceeEEEecCCCCccCHHHHhcC
Confidence 443 8999999999999996653221111122323333444443355678999999985
No 15
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.21 E-value=5.7e-11 Score=87.32 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=88.3
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+++++.++|++|++.++++.|+++|..++ | .++|.. ++ ..- -++|.|..+..+|+
T Consensus 42 K~plFsleER~~l~~~~~~~l~nV~V~~f~----~--Llvd~a---k~-~~a----------~~ivRGLR~~sDfe---- 97 (159)
T COG0669 42 KKPLFSLEERVELIREATKHLPNVEVVGFS----G--LLVDYA---KK-LGA----------TVLVRGLRAVSDFE---- 97 (159)
T ss_pred cCCCcCHHHHHHHHHHHhcCCCceEEEecc----c--HHHHHH---HH-cCC----------CEEEEeccccchHH----
Confidence 899999999999999999999999999877 2 444443 33 222 28999999999998
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYI 161 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI 161 (173)
| + -++.. ++|. |...-+.+++........||||.+|+....|.++..+||+.|.+-+
T Consensus 98 Y-E---~qma~------~N~~-------------L~~eveTvFl~~s~~~~~iSSs~Vreia~~ggdvs~~VP~~V~~~l 154 (159)
T COG0669 98 Y-E---LQMAH------MNRK-------------LAPEVETVFLMPSPEYSFISSSLVREIAAFGGDVSEFVPEAVARAL 154 (159)
T ss_pred H-H---HHHHH------HHHh-------------hcccccEEEecCCcceehhhHHHHHHHHHhCCCchhhCCHHHHHHH
Confidence 5 3 12221 3332 2111257888765566899999999999999999999999999988
Q ss_pred HhC
Q 030697 162 RES 164 (173)
Q Consensus 162 ~~~ 164 (173)
++.
T Consensus 155 ~~k 157 (159)
T COG0669 155 RAK 157 (159)
T ss_pred HHh
Confidence 764
No 16
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=98.99 E-value=1.7e-09 Score=82.61 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHc--CCCCCCCChHHHHHHHHhCC
Q 030697 133 QISSTRIRDCICR--GLSIKYLTEDKVIDYIRESR 165 (173)
Q Consensus 133 ~ISST~IR~~l~~--g~~~~~lvp~~V~~yI~~~~ 165 (173)
+||||.||+++.. |.+++++||++|.+||.+.+
T Consensus 132 ~iSsT~IR~~i~~~~g~~~~~lvP~~V~~~I~~~~ 166 (181)
T cd02168 132 DLNATDIRRAYFEGKEAMYRAALPAGVYDFLTAFQ 166 (181)
T ss_pred ccCHHHHHHHHHhcCCCChhHhCCHHHHHHHHHhC
Confidence 8999999999999 67999999999999998763
No 17
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=98.90 E-value=3.8e-09 Score=76.47 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
+..++.++|++|++.+.++.+. +..++......+++.+.+..+...++ ..++++|.|....+. +|
T Consensus 45 ~~~~~~~~R~~~l~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~G~d~~~~~~---~~ 109 (143)
T cd02039 45 KDPFSLHERVEMLKEILKDRLK--VVPVDFPEVKILLAVVFILKILLKVG----------PDKVVVGEDFAFGKN---AS 109 (143)
T ss_pred ccCCCHHHHHHHHHHhccCCcE--EEEEecChhhccCHHHHHHHHHHHcC----------CcEEEECCccccCCc---hh
Confidence 3678999999999999973334 44455444455777766655555554 359999999999999 46
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHH
Q 030697 83 MPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRD 141 (173)
Q Consensus 83 ~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~ 141 (173)
++..++++...+.+++++|.+ ....||||.||+
T Consensus 110 ~~~~~~~~~~~~~vv~~~~~~--------------------------~~~~iSSt~IR~ 142 (143)
T cd02039 110 YNKDLKELFLDIEIVEVPRVR--------------------------DGKKISSTLIRE 142 (143)
T ss_pred hhHHHHHhCCceEEEeeEecC--------------------------CCcEEehHHhhc
Confidence 432235555556666666642 124799999996
No 18
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=98.88 E-value=2.6e-08 Score=84.14 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=94.0
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCc-----eeechhhhcCCCccchHHHHHH--HHHHhhhcccccCCCceEEEEeehhhh
Q 030697 1 MIQGLISAEHRINLCNLACKSSDF-----IMVDPWEANQSGYQRTLTVLSR--VKNFLIEAGLISTESLKVMLVCGSDLL 73 (173)
Q Consensus 1 ~k~~~~~~~~Rl~M~~la~~~~~~-----~~v~~~E~~~~~~syTi~tl~~--l~~~~p~~~~~~~~~~~~~fliG~D~l 73 (173)
+|...++++.|++|+++++++++. +.++++|....|++ ++|.+ +++.|+. . +||+|.|.+
T Consensus 224 ~k~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~em~~agpr---eall~Aiir~nyG~---------t-h~IiG~Dha 290 (383)
T TIGR00339 224 TKPGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPLAMRYAGPR---EAIWHAIIRKNYGA---------T-HFIVGRDHA 290 (383)
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCceEEEecchHhhcCCcH---HHHHHHHHHHHCCC---------C-EEEECCCCC
Confidence 366789999999999999999876 89999999999988 99999 9999985 2 999999987
Q ss_pred hhCCC--CC-CCCcchHHHHhhccc----E--EEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCC-----CCCcccHHHH
Q 030697 74 ESFAI--PG-FWMPEQVWTICRNFG----V--ICIRREGQDVEKIISDNEILDKNKGNIKLVDEL-----VPNQISSTRI 139 (173)
Q Consensus 74 ~~l~~--w~-~W~~~~~~~l~~~~~----l--iv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~-----~~~~ISST~I 139 (173)
---+. -. -|..++.++|++.+. + +.++---|.. ..+.+...+.. ....+|.|.|
T Consensus 291 g~g~~~~~~~~Y~~~~aq~i~~~~~~~l~I~~v~~~~~~Yc~------------~c~~~~~~~~cph~~~~~~~~sgt~i 358 (383)
T TIGR00339 291 GPGSNSKGQDFYGPYDAQELFEKYKAELGIKIVPFEHVAYCP------------DEDEYAPADQAGHTNLRTLNISGTKL 358 (383)
T ss_pred CCCCCCccccCCCcchHHHHHHhCccccCceEEecceeEEEc------------ccCcEeecccCCCCccceeeeCHHHH
Confidence 54310 00 233345688886541 1 1111111100 01222222211 2358999999
Q ss_pred HHHHHcCCCC-CCCChHHHHHHHH
Q 030697 140 RDCICRGLSI-KYLTEDKVIDYIR 162 (173)
Q Consensus 140 R~~l~~g~~~-~~lvp~~V~~yI~ 162 (173)
|++|+.|..+ ..+..++|.+-++
T Consensus 359 r~~L~~G~~pP~~f~rpeV~~~L~ 382 (383)
T TIGR00339 359 RGMLREGVFPPEWFSRPEVVKILR 382 (383)
T ss_pred HHHHHCCCCCCCccCcHHHHHHHh
Confidence 9999999754 5688899988764
No 19
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=98.87 E-value=2.1e-08 Score=75.50 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.5
Q ss_pred CcccHHHHHHHHHcCCCCCCCChHHHHHHHHhCC
Q 030697 132 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 165 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~ 165 (173)
-.+|||+||+.+..|++++.|||++|.+||++-+
T Consensus 122 ~~~S~T~IR~~i~~~~~W~~lVP~~v~~~i~~i~ 155 (165)
T TIGR01527 122 KEYSGTEIRRRMLNGEDWEHLVPKAVADVIKEIK 155 (165)
T ss_pred CcccHHHHHHHHHcCCChhhhCCHHHHHHHHHcC
Confidence 4889999999999999999999999999998754
No 20
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=98.80 E-value=7.9e-08 Score=72.21 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHcCCCCCCCChHHHHHHHHhCCC
Q 030697 133 QISSTRIRDCICRGLSIKYLTEDKVIDYIRESRL 166 (173)
Q Consensus 133 ~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~L 166 (173)
.||||.||+.+..|+++..+||++|.+||.+-+.
T Consensus 125 ~~s~t~iR~~~~~~~~~~~~vp~~v~~~l~~~~~ 158 (163)
T cd02166 125 EYSGTEIRRLMLGGEDWEELVPKSVAEVIKEIGG 158 (163)
T ss_pred CCCHHHHHHHHHcCCchhhcCCHHHHHHHHHcCC
Confidence 5999999999999999999999999999988664
No 21
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.74 E-value=2.6e-08 Score=81.52 Aligned_cols=131 Identities=11% Similarity=0.062 Sum_probs=80.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhh-CCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLES-FAIPG 80 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~-l~~w~ 80 (173)
++..+++++|++|+++++++.|+++|..++ + ++++.+ +||. |||--.|.+.. |.
T Consensus 152 ~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~----~--l~v~~~-----~~~~-----------~~~~~~~~~~~~~a--- 206 (297)
T cd02169 152 DKSLFSFADRFKLVKKGTKHLKNVTVHSGG----D--YIISSA-----TFPS-----------YFIKEQDVVIKAQT--- 206 (297)
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCEEEEecC----C--eeeccc-----cChh-----------hhcCChhHHHHHHh---
Confidence 456789999999999999999999888766 2 556643 4675 88887776542 22
Q ss_pred CCCcch-HHHHh-h--cccEEEEc---CCCCChhhhhhhHHHhh---hcCCCeEEEcCC--CCCcccHHHHHHHHHcCC-
Q 030697 81 FWMPEQ-VWTIC-R--NFGVICIR---REGQDVEKIISDNEILD---KNKGNIKLVDEL--VPNQISSTRIRDCICRGL- 147 (173)
Q Consensus 81 ~W~~~~-~~~l~-~--~~~liv~~---R~g~~~~~~~~~~~~l~---~~~~~i~~l~~~--~~~~ISST~IR~~l~~g~- 147 (173)
+....+ ++ ++ + .+.-+|+. |-|...... ...+. +++-.+..++.. ....||||.||+.|.+|.
T Consensus 207 ~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~---~~l~~~~~~~gf~v~~v~~~~~~g~~ISST~IR~~l~~G~v 282 (297)
T cd02169 207 ALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYN---QTMQEELLSPAIEVIEIERKKYDGQPISASTVRQLLKEGNL 282 (297)
T ss_pred cCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhH---HHHHHhcccCCCEEEEecccccCCcEEcHHHHHHHHHcCCH
Confidence 232211 22 33 2 24445553 223221111 11111 112234444311 235899999999999996
Q ss_pred -CCCCCChHHHHHHH
Q 030697 148 -SIKYLTEDKVIDYI 161 (173)
Q Consensus 148 -~~~~lvp~~V~~yI 161 (173)
....+||++|++++
T Consensus 283 ~~A~~lLp~~~~~~~ 297 (297)
T cd02169 283 EEIAKLVPETTYEFL 297 (297)
T ss_pred HHHHHhCCHHhHhhC
Confidence 77889999999864
No 22
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.72 E-value=9.8e-08 Score=72.96 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHcCC--CCCCCChHHHHHHH
Q 030697 132 NQISSTRIRDCICRGL--SIKYLTEDKVIDYI 161 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~--~~~~lvp~~V~~yI 161 (173)
..||||.||+.|.+|. .+..+||..+.+|+
T Consensus 151 ~~iSST~IR~~L~~G~v~~a~~lLP~~~~~~~ 182 (182)
T smart00764 151 QPISASTVRKLLKEGNLEELAKLVPETTLNFL 182 (182)
T ss_pred cEECHHHHHHHHHcCCHHHHHHhCCHHHHhhC
Confidence 4799999999999995 78889999998873
No 23
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.68 E-value=3.1e-07 Score=69.75 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=31.1
Q ss_pred CcccHHHHHHHHHcCCCCCCCChHHHHHHHHhCC
Q 030697 132 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 165 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~ 165 (173)
..||||.||+++..|++++.+||++|.+||.+-+
T Consensus 125 ~~iSsT~IR~~i~~g~~w~~~VPp~V~~~i~~~~ 158 (174)
T PRK01153 125 EEYSGTEIRRRMIEGDPWEELVPKSVAEVIKEID 158 (174)
T ss_pred CCCCHHHHHHHHHcCCchhhhCCHHHHHHHHHhC
Confidence 4899999999999999999999999999998753
No 24
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=98.44 E-value=7.1e-07 Score=65.41 Aligned_cols=100 Identities=14% Similarity=0.042 Sum_probs=69.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+..++.++|++|+++++++.|+++|..++- | .+++. . ++... -+.|.|-++..+|+
T Consensus 41 K~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~---~--l~v~~---~-~~~~a----------~~ivrGlR~~~Dfe---- 97 (140)
T PRK13964 41 KSNASDLDSRFKNVKNKLKDFKNVEVLINEN---K--LTAEI---A-KKLGA----------NFLIRSARNNIDFQ---- 97 (140)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCCcEEecCcC---C--cHHHH---H-HHCCC----------eEEEEecCCCccHH----
Confidence 6678999999999999999999998876531 2 44442 2 33332 39999999999987
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCC
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 147 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~ 147 (173)
| + ..+. .++|. +...-+.++++.......||||.||+..+.|+
T Consensus 98 y-E---~~~a------~~n~~-------------l~~~ietvfl~~~~~~~~iSSs~vre~~~~~~ 140 (140)
T PRK13964 98 Y-E---IVLA------AGNKS-------------LNNDLETILIIPDYDKIEYSSTLLRHKKFLKK 140 (140)
T ss_pred H-H---HHHH------HHHHh-------------hcCCCeEEEeecCCCCCEEeHHHHHHHHHccC
Confidence 4 2 1222 12222 22223577787656678999999999887663
No 25
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.33 E-value=2.3e-06 Score=71.39 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCcccHHHHHHHHHcCCCCCC---CChHHHHHHHHhC
Q 030697 131 PNQISSTRIRDCICRGLSIKY---LTEDKVIDYIRES 164 (173)
Q Consensus 131 ~~~ISST~IR~~l~~g~~~~~---lvp~~V~~yI~~~ 164 (173)
...+|||.||+++..|..+.. +||++|.+||.+-
T Consensus 135 ~~~~s~T~iR~~~~~~~~~~~~~~~vP~~v~~~l~~~ 171 (340)
T PRK05379 135 TEDLSATEIRDAYFEGRISSFYGWAVPAPVYAFLEAF 171 (340)
T ss_pred ccccCccHHHHHHHcCCCchhhhhcCCHHHHHHHHHh
Confidence 457999999999999988665 8999999999864
No 26
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.13 E-value=9.6e-06 Score=62.52 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=30.5
Q ss_pred CcccHHHHHHHHHcCCCCCCCChHHHHHHHHhC
Q 030697 132 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 164 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~ 164 (173)
..+|+|+||+++..|.++..+||++|.++|.+-
T Consensus 134 ~~~SaT~IR~~~~~g~~w~~lVP~~V~~~l~~~ 166 (196)
T PRK13793 134 DSISATPMREAYYQGKIKTDAFPKGTIQFLEEF 166 (196)
T ss_pred CccchHHHHHHHHcCCChhhhCCHHHHHHHHHh
Confidence 579999999999999999999999999999864
No 27
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.09 E-value=4.2e-06 Score=69.64 Aligned_cols=136 Identities=13% Similarity=0.200 Sum_probs=82.4
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+.++++++|++|++.++++.+++.|.... .|++. ..+||. ||+=..|.+...++
T Consensus 177 ~~~~f~~~~R~~~v~~~~~~~~nv~v~~~~------~~~is-----~atfp~-----------yflk~~~~~~~~~~--- 231 (332)
T TIGR00124 177 DASLFSYDERFALVKQGIQDLSNVTVHNGS------AYIIS-----RATFPA-----------YFLKEQDVADDCYT--- 231 (332)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCEEEEecC------Cceec-----cccchh-----------hhcCChhHHHHHHH---
Confidence 467899999999999999999998887533 36555 456775 78877776654321
Q ss_pred CCcchHHHHhhc--ccEEEEc-CC-CCChhhhhhh--HHHhh-----hcC-CCeEE--EcC--CCCCcccHHHHHHHHHc
Q 030697 82 WMPEQVWTICRN--FGVICIR-RE-GQDVEKIISD--NEILD-----KNK-GNIKL--VDE--LVPNQISSTRIRDCICR 145 (173)
Q Consensus 82 W~~~~~~~l~~~--~~liv~~-R~-g~~~~~~~~~--~~~l~-----~~~-~~i~~--l~~--~~~~~ISST~IR~~l~~ 145 (173)
.-+ -.|+.. ++.+-+. |- |.++-..+.. ++.+. ..+ ..|.+ +.. .....+|+|.||+.|++
T Consensus 232 --~ld-~~~f~~~ia~~l~i~~r~vg~ep~~~~t~~yn~~m~~~~~~~~~~~~I~~~~I~R~~~~~~~~SASaIR~~L~~ 308 (332)
T TIGR00124 232 --EID-LKLFRYKIAPALGITHRFVGTEPLCPVTALYNQKMKYWLEEPNDAPPIEVVEIQRKLAAGGPISASTVRELLAK 308 (332)
T ss_pred --HHH-HHHHHHhchHhhCCccceeCCCCCCHhHHHHHHHHHHhhhccCCCCCcEEEEEeeecCCCCeeCHHHHHHHHHc
Confidence 101 123321 3333333 33 5443221111 11122 111 23332 221 11236999999999988
Q ss_pred CC--CCCCCChHHHHHHHHhCC
Q 030697 146 GL--SIKYLTEDKVIDYIRESR 165 (173)
Q Consensus 146 g~--~~~~lvp~~V~~yI~~~~ 165 (173)
|. .+..+||+...+|+.++.
T Consensus 309 ~~~~~i~~~VP~~t~~~l~~~~ 330 (332)
T TIGR00124 309 GDWAAWAKLVPETTLHFLQNLL 330 (332)
T ss_pred CCHHHHHHhCCHHHHHHHHHhh
Confidence 74 688999999999998764
No 28
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=97.98 E-value=2.7e-05 Score=56.39 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=56.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
...++.++|++|++. +...+.+.+.. +.++++.|.+.+|+ ++++|.|...... +|
T Consensus 47 ~~~~~~~eR~~~l~~-~~~vd~v~~~~----------~~~~~~~l~~~~~~-----------~vv~G~d~~fg~~---~~ 101 (136)
T cd02170 47 RPILPEEQRAEVVEA-LKYVDEVILGH----------PWSYFKPLEELKPD-----------VIVLGDDQKNGVD---EE 101 (136)
T ss_pred CCCCCHHHHHHHHHc-CCCcCEEEECC----------CCCHhHHHHHHCCC-----------EEEECCCCCCCCc---ch
Confidence 367899999999995 55544443321 23455566665563 8999999876655 46
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHH
Q 030697 83 MPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCIC 144 (173)
Q Consensus 83 ~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~ 144 (173)
.++ +.+-+....+++.| .....||||.||+++.
T Consensus 102 ~~~--~~l~~~g~~~~~~~---------------------------~~~~~vSSt~Ir~~i~ 134 (136)
T cd02170 102 EVY--EELKKRGKVIEVPR---------------------------KKTEGISSSDIIKRIL 134 (136)
T ss_pred hHH--HHHHHCCeEEEECC---------------------------CCCCCCcHHHHHHHHH
Confidence 443 55554434333332 0123799999999985
No 29
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.94 E-value=1.1e-05 Score=60.80 Aligned_cols=131 Identities=20% Similarity=0.233 Sum_probs=74.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
+..+|++.|++|++.-+++.+++.|-. |..|-|. ...||. ||+=..+.....+. .-
T Consensus 38 ~S~Fpf~~R~~LVk~G~~~L~NV~V~~------~g~YiIS-----~aTFPs-----------YFlK~~~~~~~~~~--~l 93 (182)
T PF08218_consen 38 RSLFPFADRYELVKEGTADLPNVTVHP------GGDYIIS-----SATFPS-----------YFLKDEDDVIKAQA--EL 93 (182)
T ss_pred cCcCCHHHHHHHHHHHhCcCCCEEEEc------CCCeeee-----cccChh-----------hhccchhHHHHHHH--HH
Confidence 357899999999999999999988753 3234333 234554 66666555543321 00
Q ss_pred CcchHHHHhhc--ccEE-EEcCC-CCChhhhhhh--HH----HhhhcCCCeEEEc--CCCCCcccHHHHHHHHHcCC--C
Q 030697 83 MPEQVWTICRN--FGVI-CIRRE-GQDVEKIISD--NE----ILDKNKGNIKLVD--ELVPNQISSTRIRDCICRGL--S 148 (173)
Q Consensus 83 ~~~~~~~l~~~--~~li-v~~R~-g~~~~~~~~~--~~----~l~~~~~~i~~l~--~~~~~~ISST~IR~~l~~g~--~ 148 (173)
+ -.|+.. ++.+ +-.|- |.++-..... ++ .|...+-.+..++ ......||+|.+|+.|++|. .
T Consensus 94 -D---~~iF~~~IAp~L~It~RfVG~EP~~~vT~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISAS~VR~~l~~~~~~~ 169 (182)
T PF08218_consen 94 -D---ATIFKKYIAPALGITKRFVGEEPFSPVTRIYNEAMKEILPPYGIEVVEIPRKEINGEPISASRVRKLLKEGDFEE 169 (182)
T ss_pred -H---HHHHHHHhhHhcCcccceeCCCCCCHHHHHHHHHHHHhccccCCEEEEEecccCCCcEEcHHHHHHHHHcCCHHH
Confidence 1 122211 2222 23333 4433221111 11 2222211223332 12236999999999999995 6
Q ss_pred CCCCChHHHHHHH
Q 030697 149 IKYLTEDKVIDYI 161 (173)
Q Consensus 149 ~~~lvp~~V~~yI 161 (173)
++.+||+.-++|+
T Consensus 170 i~~lVP~tT~~yl 182 (182)
T PF08218_consen 170 IKKLVPETTYDYL 182 (182)
T ss_pred HHHhCCHhhHhhC
Confidence 8899999999885
No 30
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=97.88 E-value=7.8e-05 Score=55.71 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQ 34 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~ 34 (173)
|+..+++++|++|+++|+++.+++.|+.+|+..
T Consensus 42 ~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d 74 (158)
T cd02167 42 ARTGLPLEKRLRWLREIFPDQENIVVHTLNEPD 74 (158)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 456789999999999999999999999998753
No 31
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.32 E-value=0.00082 Score=54.63 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=30.4
Q ss_pred CCcccHHHHHHHHHcCC--CCCCCChHHHHHHHHhC
Q 030697 131 PNQISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 164 (173)
Q Consensus 131 ~~~ISST~IR~~l~~g~--~~~~lvp~~V~~yI~~~ 164 (173)
...||+|.+|+.++++. .+..+||+.-++|+.+|
T Consensus 301 ~~~ISAS~VR~~l~~~~~~~ia~lVP~tTl~Yl~~~ 336 (352)
T COG3053 301 EMPISASRVRQLLAKNDLEAIANLVPATTLNYLQQH 336 (352)
T ss_pred CCcccHHHHHHHHHhCCHHHHHhhCcHHHHHHHHHH
Confidence 36999999999999984 68899999999999875
No 32
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=96.87 E-value=0.007 Score=45.98 Aligned_cols=16 Identities=44% Similarity=0.736 Sum_probs=14.6
Q ss_pred CcccHHHHHHHHHcCC
Q 030697 132 NQISSTRIRDCICRGL 147 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~ 147 (173)
..||||.||+.|++|+
T Consensus 144 ~~iSST~IR~~i~~G~ 159 (180)
T cd02064 144 ERVSSTRIREALAEGD 159 (180)
T ss_pred cEEcHHHHHHHHHhCC
Confidence 4899999999999985
No 33
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.68 E-value=0.0082 Score=51.31 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhh
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEA 32 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~ 32 (173)
+..++.++|++|++.++++.++++|..++-
T Consensus 103 ~~~~s~~~R~~~l~~~~~~~~~v~v~~~~~ 132 (399)
T PRK08099 103 SQQPTVSDRLRWLLQTFKYQKNIKIHAFNE 132 (399)
T ss_pred cCCCCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 457899999999999999999999987664
No 34
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=95.96 E-value=0.057 Score=38.48 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.8
Q ss_pred CcccHHHHHHHHHc
Q 030697 132 NQISSTRIRDCICR 145 (173)
Q Consensus 132 ~~ISST~IR~~l~~ 145 (173)
..||||.||+.|+.
T Consensus 115 ~~iSSt~Ir~~i~~ 128 (129)
T cd02171 115 KGISSTQLKEMLKK 128 (129)
T ss_pred CCcChHHHHHHHhh
Confidence 47999999999863
No 35
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=95.84 E-value=0.018 Score=42.72 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHhcC
Q 030697 3 QGLISAEHRINLCNLACKS 21 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~ 21 (173)
....++++|++|++.++.+
T Consensus 47 ~~i~~~e~R~~~v~~~~~~ 65 (153)
T PRK00777 47 HKVRPYEVRLKNLKKFLKA 65 (153)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 3578999999999998876
No 36
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=95.21 E-value=0.32 Score=38.17 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=22.7
Q ss_pred CcccHHHHHHHHHcCCCC-CCCChHHHHHHHHh
Q 030697 132 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 163 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~~~-~~lvp~~V~~yI~~ 163 (173)
..||+|.||++|++|..+ ..++.++|.+-|.+
T Consensus 181 ~~iSgt~ir~~L~~G~~pP~~f~rpeV~~~L~~ 213 (215)
T PF01747_consen 181 ISISGTEIRELLREGEEPPEWFMRPEVAAILRR 213 (215)
T ss_dssp EE--HHHHHHHHHTT----TTTS-HHHHHHHHH
T ss_pred eeeCHHHHHHHHHCcCCCCCCcCcHHHHHHHHH
Confidence 489999999999999755 46889999998875
No 37
>PRK07143 hypothetical protein; Provisional
Probab=94.96 E-value=0.17 Score=41.27 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=14.5
Q ss_pred CcccHHHHHHHHHcCC
Q 030697 132 NQISSTRIRDCICRGL 147 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~ 147 (173)
..||||.||+.|++|.
T Consensus 148 ~~ISST~IR~~l~~G~ 163 (279)
T PRK07143 148 QKISTSLLKEFIEFGD 163 (279)
T ss_pred cEEcHHHHHHHHHcCC
Confidence 5899999999999984
No 38
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=94.42 E-value=0.25 Score=40.45 Aligned_cols=16 Identities=38% Similarity=0.439 Sum_probs=14.5
Q ss_pred CcccHHHHHHHHHcCC
Q 030697 132 NQISSTRIRDCICRGL 147 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~ 147 (173)
..||||.||+.|++|.
T Consensus 142 ~~ISST~IR~~l~~G~ 157 (288)
T TIGR00083 142 IRISSSAIRQALKNGD 157 (288)
T ss_pred CeECHHHHHHHHHcCC
Confidence 5899999999999984
No 39
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=94.28 E-value=0.35 Score=39.93 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.8
Q ss_pred CCcccHHHHHHHHHcCC
Q 030697 131 PNQISSTRIRDCICRGL 147 (173)
Q Consensus 131 ~~~ISST~IR~~l~~g~ 147 (173)
...||||.||+.|.+|.
T Consensus 158 ~~~ISST~IR~~I~~G~ 174 (305)
T PRK05627 158 GERVSSTAIRQALAEGD 174 (305)
T ss_pred CCcCchHHHHHHHHcCC
Confidence 35899999999999984
No 40
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=93.32 E-value=1.5 Score=36.94 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCcccHHHHHHHHHcCCCC-CCCChHHHHHHHHh
Q 030697 131 PNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 163 (173)
Q Consensus 131 ~~~ISST~IR~~l~~g~~~-~~lvp~~V~~yI~~ 163 (173)
...||.|.||+.|+.|..+ ..+..++|.+-|.+
T Consensus 319 ~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~~L~~ 352 (353)
T cd00517 319 FLNISGTKLRKMLREGEKPPEWFMRPEVAKVLRE 352 (353)
T ss_pred eeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhh
Confidence 3599999999999999754 56889999988865
No 41
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=92.95 E-value=0.1 Score=43.32 Aligned_cols=29 Identities=10% Similarity=0.081 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCc-eeechhh
Q 030697 3 QGLISAEHRINLCNLACKSSDF-IMVDPWE 31 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~-~~v~~~E 31 (173)
+..+++++|++|+++++++.++ ++|++++
T Consensus 45 ~~~~~~~~R~~~l~~~~~~~~~~v~v~~~~ 74 (325)
T TIGR01526 45 KRPPPVQDRLRWLREIFKYQKNQIFIHHLN 74 (325)
T ss_pred CCCCCHHHHHHHHHHHhccCCCeEEEEEcC
Confidence 4678999999999999999999 9999887
No 42
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=92.24 E-value=1.3 Score=32.76 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhh
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 73 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l 73 (173)
+..+.++|.+|++. ++.-+.+.+.. ...++.+.++.+ -|+ +++.|.|..
T Consensus 51 pi~~~~eR~~~l~~-~~~Vd~Vi~~~------~~~~~~~~i~~~---~~d-----------~vv~G~d~~ 99 (150)
T cd02174 51 PVMTEEERYEAVRH-CKWVDEVVEGA------PYVTTPEFLDKY---KCD-----------YVAHGDDIY 99 (150)
T ss_pred CcCCHHHHHHHHHh-cCCCCeEEECC------CCCChHHHHHHh---CCC-----------EEEECCCCC
Confidence 67899999999984 45445444431 223556666433 243 788997654
No 43
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=91.59 E-value=4.3 Score=34.77 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=28.3
Q ss_pred CCcccHHHHHHHHHcCCCC-CCCChHHHHHHHHhC
Q 030697 131 PNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRES 164 (173)
Q Consensus 131 ~~~ISST~IR~~l~~g~~~-~~lvp~~V~~yI~~~ 164 (173)
...||.|.||+.++.|..+ ..+..++|.+.|.+.
T Consensus 346 ~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~iL~~~ 380 (391)
T PRK04149 346 RVHLSGTKVREMLREGEKPPPEFSRPEVAEVLIKG 380 (391)
T ss_pred eEeeCHHHHHHHHHCcCCCCCccCcHHHHHHHHHH
Confidence 3589999999999999754 568899999888764
No 44
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=91.24 E-value=0.56 Score=33.24 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCcccHHHHHHHH
Q 030697 121 GNIKLVDELVPNQISSTRIRDCI 143 (173)
Q Consensus 121 ~~i~~l~~~~~~~ISST~IR~~l 143 (173)
..+..++ ....||||.||+.+
T Consensus 105 ~~v~~v~--~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 105 LKVVYLP--RTEGVSTTKIKKEI 125 (125)
T ss_pred cEEEEeC--CCCCccHHHHHhhC
Confidence 3455554 23469999999863
No 45
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=89.07 E-value=7 Score=35.14 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=26.9
Q ss_pred CcccHHHHHHHHHcCCCC-CCCChHHHHHHHHh
Q 030697 132 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 163 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~~~-~~lvp~~V~~yI~~ 163 (173)
..+|+|.||+.|+.|..+ ..+..++|.+.+.+
T Consensus 351 ~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~ 383 (568)
T PRK05537 351 LTISGTELRRRLREGLEIPEWFSFPEVVAELRR 383 (568)
T ss_pred eccCHHHHHHHHHCCCCCChhhcHHHHHHHHHH
Confidence 689999999999999754 46899999996554
No 46
>PRK13660 hypothetical protein; Provisional
Probab=84.85 E-value=15 Score=28.01 Aligned_cols=123 Identities=8% Similarity=0.076 Sum_probs=72.2
Q ss_pred CCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCCCcch---HHHHhhcccEE
Q 030697 21 SSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQ---VWTICRNFGVI 97 (173)
Q Consensus 21 ~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W~~~~---~~~l~~~~~li 97 (173)
+..+|-++. ..+--.++.+++-.||++||+- ++..++=.-+... +|.+.+ +..|++.|+++
T Consensus 42 G~~wfi~gg---alG~d~wAaEvvl~LK~~yp~l--------kL~~~~PF~~q~~-----~W~e~~q~~y~~i~~~aD~v 105 (182)
T PRK13660 42 GLEWVIISG---QLGVELWAAEVVLELKEEYPDL--------KLAVITPFEEHGE-----NWNEANQEKLANILKQADFV 105 (182)
T ss_pred CCCEEEECC---cchHHHHHHHHHHHHHhhCCCe--------EEEEEeCccchhh-----cCCHHHHHHHHHHHHhCCEE
Confidence 455555442 1122357889999999999974 6676665544433 676532 46788999998
Q ss_pred EEcCCCCC--hhhhhhhHHHhhhcCCC-eEEEcCCCCCcccHH--HHHHHHHc----CCCCCCCChHHHHHHHH
Q 030697 98 CIRREGQD--VEKIISDNEILDKNKGN-IKLVDELVPNQISST--RIRDCICR----GLSIKYLTEDKVIDYIR 162 (173)
Q Consensus 98 v~~R~g~~--~~~~~~~~~~l~~~~~~-i~~l~~~~~~~ISST--~IR~~l~~----g~~~~~lvp~~V~~yI~ 162 (173)
++--+.+- +..+....+.+-..... +.+-+ .... ++| .+|.+.+. |..+..+-|+...+.+.
T Consensus 106 ~~vs~~~y~~p~q~~~rn~fmv~~sd~~i~~YD-~e~~--Ggt~y~~~~A~k~~~~~~y~i~~I~~~~l~~~~~ 176 (182)
T PRK13660 106 KSISKRPYESPAQFRQYNQFMLEHTDGALLVYD-EENE--GSPKYFYEAAKKKQEKEDYPLDLITFDDLQEIAE 176 (182)
T ss_pred EEecCCCCCChHHHHHHHHHHHHccCeEEEEEc-CCCC--CChHHHHHHHHHhhhccCceEEEeCHHHHHHHHH
Confidence 88766532 33332222232222333 44444 3322 444 46777666 77777777877777554
No 47
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=78.97 E-value=4.4 Score=29.93 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhh
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 74 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~ 74 (173)
+..+.++|++|+ .+++..+.+.+...+ ..+.+.++ +.-|+ +++.|.|...
T Consensus 51 pi~~~~eR~~~v-~~~~~Vd~V~v~~~~------~~~~~~~~---~~~~d-----------~vv~G~d~~~ 100 (152)
T cd02173 51 PIMNLHERVLSV-LACRYVDEVVIGAPY------VITKELIE---HFKID-----------VVVHGKTEET 100 (152)
T ss_pred CCCCHHHHHHHH-HhcCCCCEEEECCCC------cchHHHHH---HhCCC-----------EEEECCCCcc
Confidence 689999999999 678877766664322 23344443 32243 8999988753
No 48
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=74.95 E-value=4.2 Score=30.80 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=30.2
Q ss_pred CCcccHHHHHHHHHcCCC-CCCCChHHHHHHHHh
Q 030697 131 PNQISSTRIRDCICRGLS-IKYLTEDKVIDYIRE 163 (173)
Q Consensus 131 ~~~ISST~IR~~l~~g~~-~~~lvp~~V~~yI~~ 163 (173)
..+.|.|.||..+..|+. +.+++|+.|..||.+
T Consensus 126 ~~e~~~t~ir~~~~~~e~~w~~~~~~~v~~~i~e 159 (172)
T COG1056 126 RWEYSGTAIRRKMLGGEDVWEDLVPTFVAESITE 159 (172)
T ss_pred ccccccchHHHHhhcCccchhhccCchHhHHHHh
Confidence 469999999999999987 999999999999976
No 49
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=74.21 E-value=4 Score=24.95 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHhcCCC
Q 030697 4 GLISAEHRINLCNLACKSSD 23 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~ 23 (173)
..++.++|.+|++.++...+
T Consensus 46 ~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 46 PVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred CCCCHHHHHHHHHHhccccC
Confidence 67899999999999876543
No 50
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=73.88 E-value=3.9 Score=31.14 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=16.6
Q ss_pred CCCCCCChHHHHHHHHhCCC
Q 030697 147 LSIKYLTEDKVIDYIRESRL 166 (173)
Q Consensus 147 ~~~~~lvp~~V~~yI~~~~L 166 (173)
.....-||++|++||++|+.
T Consensus 93 dK~k~~LPddVI~YmrdNgI 112 (196)
T PRK15364 93 AKTKEEVPEDVIKYMRDNGI 112 (196)
T ss_pred CcccccCCHHHHHHHHHcCc
Confidence 34556799999999999986
No 51
>PRK13670 hypothetical protein; Provisional
Probab=72.97 E-value=1.8 Score=36.94 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=27.5
Q ss_pred CcccHHHHHHHHHcC--CCCCCCChHHHHHHHHh
Q 030697 132 NQISSTRIRDCICRG--LSIKYLTEDKVIDYIRE 163 (173)
Q Consensus 132 ~~ISST~IR~~l~~g--~~~~~lvp~~V~~yI~~ 163 (173)
.-+|+|.||+.+..| ..+..+||+...+++.+
T Consensus 199 ~~aSASaIR~~L~~~~~~~i~~~vP~~t~~il~~ 232 (388)
T PRK13670 199 EFASATAIRKALLEKDLDELKKFVPKATLELLKR 232 (388)
T ss_pred cChhHHHHHHHHHhCCHHHHHHhCCHHHHHHHHh
Confidence 359999999999876 46889999999999876
No 52
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=72.12 E-value=5.6 Score=28.91 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=18.9
Q ss_pred hhhcCCCeEEEcCCCCCcccHHHHHHHHH
Q 030697 116 LDKNKGNIKLVDELVPNQISSTRIRDCIC 144 (173)
Q Consensus 116 l~~~~~~i~~l~~~~~~~ISST~IR~~l~ 144 (173)
+.+++..+.+++ ....||||.||+++.
T Consensus 117 ~~~~g~~v~~~~--~~~~iSSs~Ir~ri~ 143 (144)
T TIGR02199 117 VESYGGQVVLLP--FVEGRSTTAIIEKIL 143 (144)
T ss_pred HHHcCCEEEEEe--CCCCcCHHHHHHHHh
Confidence 344556677774 224899999999985
No 53
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=70.87 E-value=5.1 Score=35.30 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCCceeechhhhcCCCccchHHHHHHHHHHhhh
Q 030697 21 SSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIE 53 (173)
Q Consensus 21 ~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~ 53 (173)
+.|-.--+.|+-.-+|..|.+|.+++++++|++
T Consensus 114 GDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGD 146 (590)
T KOG0564|consen 114 GDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGD 146 (590)
T ss_pred CCCCCCccccccccCCchhHHHHHHHHHHHhCC
Confidence 344344445776667899999999999999987
No 54
>PRK13671 hypothetical protein; Provisional
Probab=68.92 E-value=4.2 Score=33.51 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 030697 133 QISSTRIRDCICRGLSIKYLTEDKVIDYIR 162 (173)
Q Consensus 133 ~ISST~IR~~l~~g~~~~~lvp~~V~~yI~ 162 (173)
-.|+|.||+.+..|..+...||+...+...
T Consensus 195 ~aSAtaIR~~l~~~~~~~~~~p~~~~~~l~ 224 (298)
T PRK13671 195 YASATYLRKMIFENKDISKYSPMKFKKPPK 224 (298)
T ss_pred cccHHHHHHHHhccchHHHhCCHHHHHHHH
Confidence 489999999998777888899999876554
No 55
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=67.11 E-value=8.1 Score=28.22 Aligned_cols=18 Identities=17% Similarity=-0.044 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHhcCC
Q 030697 5 LISAEHRINLCNLACKSS 22 (173)
Q Consensus 5 ~~~~~~Rl~M~~la~~~~ 22 (173)
+.++++|++|++.++++.
T Consensus 49 i~s~e~R~~~l~~~l~~~ 66 (143)
T cd02164 49 IEPYEERIANLHEFLVDL 66 (143)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 569999999999999874
No 56
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=65.39 E-value=2.8 Score=27.12 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.1
Q ss_pred hHHHHHHHHhCCCCCCCC
Q 030697 154 EDKVIDYIRESRLYLNSN 171 (173)
Q Consensus 154 p~~V~~yI~~~~LY~~~~ 171 (173)
-..+++||++|+|+.+.+
T Consensus 26 ~~~lw~YIk~~~L~dp~~ 43 (76)
T PF02201_consen 26 VKRLWQYIKENNLQDPKD 43 (76)
T ss_dssp HHHHHHHHHHTTSBESSS
T ss_pred HHHHHHHHHHhcCCCccc
Confidence 346889999999997654
No 57
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=63.46 E-value=8.6 Score=32.70 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=26.7
Q ss_pred CcccHHHHHHHHHcCC-CCCCCChHHHHHHHHh
Q 030697 132 NQISSTRIRDCICRGL-SIKYLTEDKVIDYIRE 163 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~-~~~~lvp~~V~~yI~~ 163 (173)
..+|+|.+|+.|+.|. ....+.=++|.+-|.+
T Consensus 343 ~~~SGt~lR~~Lr~G~~PP~~f~RPEV~~vl~k 375 (397)
T COG2046 343 LHISGTKLREMLRAGVKPPEEFSRPEVADVLRK 375 (397)
T ss_pred EEEccHHHHHHHHcCCCCCcccccHHHHHHHHH
Confidence 5899999999999995 4556777899988865
No 58
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=63.34 E-value=4.5 Score=33.47 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHcCC
Q 030697 133 QISSTRIRDCICRGL 147 (173)
Q Consensus 133 ~ISST~IR~~l~~g~ 147 (173)
.||||.||+.+..|.
T Consensus 160 ~iSSt~IR~~L~~gd 174 (304)
T COG0196 160 RISSTAIRQALREGD 174 (304)
T ss_pred EEchHHHHHHHhcCC
Confidence 599999999999884
No 59
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=60.93 E-value=56 Score=27.62 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=9.5
Q ss_pred CCCCHHHHHHHHH
Q 030697 4 GLISAEHRINLCN 16 (173)
Q Consensus 4 ~~~~~~~Rl~M~~ 16 (173)
++.+.++|++|++
T Consensus 58 pi~~~eeR~~~l~ 70 (353)
T PTZ00308 58 PVMHQEERYEALR 70 (353)
T ss_pred CCCCHHHHHHHHH
Confidence 3567788888876
No 60
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=56.93 E-value=33 Score=29.75 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehh
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSD 71 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D 71 (173)
+..+.++|++|++. ++..+.+.+. ....++.++++.+-+++..+ |++.|.|
T Consensus 100 PV~~~eER~~~v~a-lk~VD~Vv~~------apy~~~~d~~~~li~~~~~D----------~vVhGdD 150 (418)
T PLN02406 100 PVTPMHERMIMVSG-VKWVDEVIPD------APYAITEEFMNKLFNEYNID----------YIIHGDD 150 (418)
T ss_pred CcCCHHHHHHHHHh-cCCCceEEeC------CccccchHHHHHHHHHhCCC----------EEEECCC
Confidence 67899999999986 6655554442 12234566776555555433 8999988
No 61
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]
Probab=54.79 E-value=8.3 Score=30.83 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=24.3
Q ss_pred CCcccHHHHHHHHHcCCCCCCCChHHHHHHHHhCCCCCCCC
Q 030697 131 PNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNSN 171 (173)
Q Consensus 131 ~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~LY~~~~ 171 (173)
..++|.+.=+- +...+--+.-|-..|++||++|+|+-..+
T Consensus 103 l~~ls~~L~~~-~G~~~lsR~~vvk~iw~YIke~nLqDP~n 142 (240)
T KOG1946|consen 103 LIPLSPSLARF-VGTSELSRTDVVKKIWAYIKEHNLQDPKN 142 (240)
T ss_pred ccccCHHHHhh-cccccccHHHHHHHHHHHHHHhccCCccc
Confidence 45666554332 21112223446778999999999987654
No 62
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=53.51 E-value=11 Score=24.28 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=13.7
Q ss_pred ChHHHHHHHHhCCCCCCC
Q 030697 153 TEDKVIDYIRESRLYLNS 170 (173)
Q Consensus 153 vp~~V~~yI~~~~LY~~~ 170 (173)
|-..+++||+.|+|....
T Consensus 25 v~~~lw~YIk~n~L~d~~ 42 (77)
T smart00151 25 IIKRLWEYIKEHNLQDPQ 42 (77)
T ss_pred HHHHHHHHHHHhcccCCc
Confidence 344788999999998643
No 63
>PLN02388 phosphopantetheine adenylyltransferase
Probab=52.17 E-value=8.6 Score=29.26 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=12.7
Q ss_pred CCcccHHHHHHHHHc
Q 030697 131 PNQISSTRIRDCICR 145 (173)
Q Consensus 131 ~~~ISST~IR~~l~~ 145 (173)
...||||.||++..+
T Consensus 152 ~~kiSST~iR~~~~~ 166 (177)
T PLN02388 152 GNKLSSTTLRRLEAE 166 (177)
T ss_pred CCccCHHHHHHHHHH
Confidence 469999999998765
No 64
>PF03433 EspA: EspA-like secreted protein ; InterPro: IPR005095 EspA is the prototypical member of this family. EspA, together with EspB, EspD and Tir are exported by a type III secretion system. These proteins are essential for attaching and effacing lesion formation. EspA is a structural protein and a major component of a large, transiently expressed, filamentous surface organelle which forms a direct link between the bacterium and the host cell [, ].; PDB: 1XOU_A.
Probab=51.81 E-value=4.8 Score=30.85 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHhCCC
Q 030697 151 YLTEDKVIDYIRESRL 166 (173)
Q Consensus 151 ~lvp~~V~~yI~~~~L 166 (173)
.-||+.|++||++|++
T Consensus 97 ~~lp~dVi~Ym~~ngI 112 (188)
T PF03433_consen 97 APLPDDVIDYMRDNGI 112 (188)
T ss_dssp ----------------
T ss_pred ccCCHHHHHHHHHcCC
Confidence 4599999999999987
No 65
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=50.33 E-value=26 Score=26.09 Aligned_cols=51 Identities=25% Similarity=0.153 Sum_probs=26.3
Q ss_pred cccEEEEcCCCCChhhhhhhHHHhhhcC-CCeEEEc---CCCCCcccHHHHHHHH
Q 030697 93 NFGVICIRREGQDVEKIISDNEILDKNK-GNIKLVD---ELVPNQISSTRIRDCI 143 (173)
Q Consensus 93 ~~~liv~~R~g~~~~~~~~~~~~l~~~~-~~i~~l~---~~~~~~ISST~IR~~l 143 (173)
.++.+|+.+..++....+.+.+.-...+ -.|+.++ .....+||||.||.-.
T Consensus 92 ~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrge 146 (158)
T COG1019 92 DFEAIVVSPETYPGALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRGE 146 (158)
T ss_pred ceeEEEEccccchhHHHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhhc
Confidence 4677888887665432222111100011 1355443 1223599999999744
No 66
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=49.70 E-value=76 Score=24.02 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=55.3
Q ss_pred ccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCCCcc---hHHHHhhcccEEEEcCCC--CChhhhhh
Q 030697 37 YQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPE---QVWTICRNFGVICIRREG--QDVEKIIS 111 (173)
Q Consensus 37 ~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W~~~---~~~~l~~~~~liv~~R~g--~~~~~~~~ 111 (173)
..++.+++..||+.||+- ++..++=.-+... +|.+. -+..|++.|+++++--+. +....+..
T Consensus 55 D~waae~vl~LK~~yp~i--------kL~~v~Pf~~q~~-----~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~ 121 (177)
T PF06908_consen 55 DLWAAEVVLELKKEYPEI--------KLALVLPFENQGN-----NWNEANQERYQSILEQADFVVVVSERPYYSPGQLQK 121 (177)
T ss_dssp HHHHHHHHHTTTTT-TT---------EEEEEESSB-TTT-----TS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHH
T ss_pred HHHHHHHHHHHHhhhhhe--------EEEEEEcccchhh-----cCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHH
Confidence 458889999999999974 7887776644432 67663 257888999998887554 33433322
Q ss_pred hHHHhhhcCCCeEEE-cCCCCCcccHHHHHHHHHc----CCCCCCCChHHHHHH
Q 030697 112 DNEILDKNKGNIKLV-DELVPNQISSTRIRDCICR----GLSIKYLTEDKVIDY 160 (173)
Q Consensus 112 ~~~~l~~~~~~i~~l-~~~~~~~ISST~IR~~l~~----g~~~~~lvp~~V~~y 160 (173)
..+.+-...+.++.+ + .....=....+|.+.+. |..+...-|+...++
T Consensus 122 rn~fMvdhsd~~iavyD-~~~~G~t~~~~~~a~~~~~~~~y~i~~I~~d~l~~~ 174 (177)
T PF06908_consen 122 RNRFMVDHSDGLIAVYD-GEPEGGTKYTVRAAKKYQEQKGYPIDLIDPDDLQEI 174 (177)
T ss_dssp HHHHHHHHSSEEEEE---TTT--TTHHHHHHHHHHHHHH---EEEE-HHHHHHH
T ss_pred HhHHHHhCCCeEEEEEe-CCCCCcchHHHHHHHHHhhccCCeEEEecHHHHHHH
Confidence 222222223444433 4 32222234445555433 345555555555544
No 67
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=49.03 E-value=5.7 Score=33.98 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=0.0
Q ss_pred CcccHHHHHHHH--HcCCCCCCCChHHHHHHH
Q 030697 132 NQISSTRIRDCI--CRGLSIKYLTEDKVIDYI 161 (173)
Q Consensus 132 ~~ISST~IR~~l--~~g~~~~~lvp~~V~~yI 161 (173)
.-.|+|.||+.+ ..+..+..+||+.+.+.+
T Consensus 200 ~~aSAtaIR~~l~~~~~~~~~~~vP~~~~~~l 231 (388)
T PF05636_consen 200 NFASATAIRKALSNNDLEEISNYVPKSSYEIL 231 (388)
T ss_dssp --------------------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 356999999999 445678899999999887
No 68
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=44.02 E-value=40 Score=24.66 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHH
Q 030697 2 IQGLISAEHRINLCN 16 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~ 16 (173)
+++..+.++|++|++
T Consensus 47 ~~pi~~~~qR~evl~ 61 (140)
T COG0615 47 RKPIMPEEQRAEVLE 61 (140)
T ss_pred CCCCCCHHHHHHHHH
Confidence 456789999999998
No 69
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=42.67 E-value=14 Score=31.36 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=28.5
Q ss_pred CcccHHHHHHHHHcCC--CCCCCChHHHHHHHHhC
Q 030697 132 NQISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 164 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~--~~~~lvp~~V~~yI~~~ 164 (173)
.-.|+|.||+.+..|. .+..+||+.+.+-+..+
T Consensus 203 ~~aSaT~IR~~i~~~~~~~~~~~vP~~t~~~l~~~ 237 (358)
T COG1323 203 EGASATAIRKAIFSGDLERIANMVPKETLEILSSK 237 (358)
T ss_pred cccchHHHHHHHhcchHHHHHhhCCHHHHHHHHhc
Confidence 5789999999999874 57789999999998865
No 70
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=39.14 E-value=57 Score=27.56 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhh
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 73 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l 73 (173)
+..+.++|.+|+. +++..+.+.+...+ ..|.+.++.+ -|+ +++.|.|..
T Consensus 241 Pi~~~~eR~~~v~-a~~~Vd~Vvi~~~~------~~~~~~i~~~---~~d-----------~vv~G~d~~ 289 (353)
T PTZ00308 241 PIMNLNERVLGVL-SCRYVDEVVIGAPF------DVTKEVIDSL---HIN-----------VVVGGKFSD 289 (353)
T ss_pred CCCCHHHHHHHHH-hhCCCCeEEEcCCC------CChHHHHHHh---CCC-----------EEEECCCCc
Confidence 6889999999994 88766666554322 2444544332 233 889997754
No 71
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=36.46 E-value=14 Score=22.82 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=29.4
Q ss_pred CcccHHHHHHHHHcCCCCCCCChHHHHHHHHhCCCCCCC
Q 030697 132 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 170 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~LY~~~ 170 (173)
.+.|.-++|+.+.....-..-.-..|.+|+.++|-|..+
T Consensus 25 ~E~~np~lR~~l~~~~~~~~~~~~~l~~~m~~kGwY~~~ 63 (64)
T PF07875_consen 25 LECANPELRQILQQILNECQQMQYELFNYMNQKGWYQPP 63 (64)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 477788999888765322234678999999999999865
No 72
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.01 E-value=1.9e+02 Score=21.94 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCCCcch---H
Q 030697 11 RINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQ---V 87 (173)
Q Consensus 11 Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W~~~~---~ 87 (173)
|..+..++-++..++-++. ..+--.++.+.+..|+++||.- ++..|-- |..-. .+|.+.. +
T Consensus 32 ~~~l~~lleeGleW~litG---qLG~E~WA~Evv~eLk~eyp~i--------k~avitp---Fe~q~--~~WnE~nq~ky 95 (180)
T COG4474 32 KKKLEALLEEGLEWVLITG---QLGFELWAAEVVIELKEEYPHI--------KLAVITP---FEEQG--KNWNEDNQMKY 95 (180)
T ss_pred HHHHHHHHhcCceEEEEec---cccHHHHHHHHHHHHHhhCCCe--------eEEEEec---hhhhc--cccCchhHHHH
Confidence 4445555566778887774 2222347888999999999953 3333322 22211 1565531 3
Q ss_pred HHHhhcccEE--EEcCCCCChhh
Q 030697 88 WTICRNFGVI--CIRREGQDVEK 108 (173)
Q Consensus 88 ~~l~~~~~li--v~~R~g~~~~~ 108 (173)
.++++.++++ +..||=..+.+
T Consensus 96 ~~~l~~aD~v~~i~~~~YesPaQ 118 (180)
T COG4474 96 ARILKAADFVKSITERPYESPAQ 118 (180)
T ss_pred HHHHhhhhhhhhhccCCccCHHH
Confidence 5677777776 45676333433
No 73
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=35.43 E-value=49 Score=22.88 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHcCCCCCCCChHHHHHHHHh
Q 030697 133 QISSTRIRDCICRGLSIKYLTEDKVIDYIRE 163 (173)
Q Consensus 133 ~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~ 163 (173)
+..-..||..++...+..--+|.+|.+.++.
T Consensus 77 e~~~e~ik~~lk~d~Ca~~~~P~~V~d~L~~ 107 (110)
T PF10828_consen 77 EERRESIKTALKDDPCANTAVPDAVIDSLRR 107 (110)
T ss_pred HHHHHHHHHHHccCccccCCCCHHHHHHHHH
Confidence 4445577777777666666799999999875
No 74
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=30.57 E-value=2.2e+02 Score=20.99 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=39.2
Q ss_pred hHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCC
Q 030697 86 QVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 147 (173)
Q Consensus 86 ~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~ 147 (173)
+++++++.+++|++.=|..+.....-..+.+...+.+.++++...-.-|--..+-+.++.|+
T Consensus 84 ~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 84 SLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGK 145 (178)
T ss_dssp SHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTS
T ss_pred ehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhcc
Confidence 36999999999999877654322222234566677777788633345666777888888875
No 75
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=29.63 E-value=1.1e+02 Score=25.60 Aligned_cols=13 Identities=46% Similarity=0.230 Sum_probs=10.2
Q ss_pred CCCcccHHHHHHH
Q 030697 130 VPNQISSTRIRDC 142 (173)
Q Consensus 130 ~~~~ISST~IR~~ 142 (173)
....||||.||+.
T Consensus 126 d~~~iSSTrIr~~ 138 (322)
T PRK01170 126 DLFPISSTRIING 138 (322)
T ss_pred CCCcccHHHHhhh
Confidence 3457999999974
No 76
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=27.19 E-value=39 Score=23.51 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEEeehhhhhhCCCCCCCCcchHHHHhhc--ccEEEEcC
Q 030697 64 VMLVCGSDLLESFAIPGFWMPEQVWTICRN--FGVICIRR 101 (173)
Q Consensus 64 ~~fliG~D~l~~l~~w~~W~~~~~~~l~~~--~~liv~~R 101 (173)
-+||||.|.... .|-....++|-++ +.|+|=-.
T Consensus 26 p~FlIGdD~~S~-----~WL~~~~~~L~~l~AvGlVVnV~ 60 (105)
T TIGR03765 26 PLFLIGDDPASR-----QWLQQNAAALKSLGAVGLVVNVE 60 (105)
T ss_pred ceEEEeCCHHHH-----HHHHHHHHHHHHCCCeEEEEecC
Confidence 499999999887 5743222444443 45555443
No 77
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=26.77 E-value=67 Score=21.34 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEEeehhhh
Q 030697 41 LTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 73 (173)
Q Consensus 41 i~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l 73 (173)
+.-|+..++.||+ .++=|+|.|+.
T Consensus 48 l~el~~c~~~~p~---------~YVRlig~D~~ 71 (84)
T cd00307 48 LAALEACLAEHPG---------EYVRLIGIDPK 71 (84)
T ss_pred HHHHHHHHHHCCC---------CeEEEEEEeCC
Confidence 3456677788887 68999999986
No 78
>PHA02047 phage lambda Rz1-like protein
Probab=25.07 E-value=94 Score=21.26 Aligned_cols=31 Identities=6% Similarity=0.060 Sum_probs=24.5
Q ss_pred cccHHHHHHHHHcCCCCCC-CChHHHHHHHHh
Q 030697 133 QISSTRIRDCICRGLSIKY-LTEDKVIDYIRE 163 (173)
Q Consensus 133 ~ISST~IR~~l~~g~~~~~-lvp~~V~~yI~~ 163 (173)
+-++-+|+..|.+.+++.+ -||+.|.+-.-+
T Consensus 65 e~~t~Ei~~aL~~n~~WaD~PVPpaV~~~Lck 96 (101)
T PHA02047 65 NTQRQEVDRALDQNRPWADRPVPPAVVDSLCK 96 (101)
T ss_pred HHHHHHHHHHHHhCCCcccCCCChHHHHHHHH
Confidence 5567789999998888865 699999886543
No 79
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=24.86 E-value=84 Score=26.14 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHH--------hc-----CCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhh
Q 030697 7 SAEHRINLCNLA--------CK-----SSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 73 (173)
Q Consensus 7 ~~~~Rl~M~~la--------~~-----~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l 73 (173)
+.+.|++|++.. ++ +...+-++..=....+..-|+++++.+|++++ +-..+|.-|+
T Consensus 161 t~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs~~~~tl~aI~~iK~~~G-----------~pt~~GlSNi 229 (308)
T PRK00979 161 SVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLPGSGAAIRAIFAVKAKFG-----------YPVGCAPHNA 229 (308)
T ss_pred CHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCccHHHHHHHHHHHHHHcC-----------CCeEEEEeCC
Confidence 889999999972 22 24556666544444556688999999999883 3567887777
Q ss_pred hh
Q 030697 74 ES 75 (173)
Q Consensus 74 ~~ 75 (173)
..
T Consensus 230 S~ 231 (308)
T PRK00979 230 PS 231 (308)
T ss_pred ch
Confidence 65
No 80
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=24.45 E-value=44 Score=24.51 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=20.1
Q ss_pred eEEEEeehhhhhhCCCCCCCCcchHHHHhhc--ccEEEEc
Q 030697 63 KVMLVCGSDLLESFAIPGFWMPEQVWTICRN--FGVICIR 100 (173)
Q Consensus 63 ~~~fliG~D~l~~l~~w~~W~~~~~~~l~~~--~~liv~~ 100 (173)
.-+||+|.|.+.. .|-....++|-++ +.+||=-
T Consensus 63 ~plFlVGdD~~S~-----~WL~~~~~~L~~l~AvGlVVNV 97 (142)
T PF11072_consen 63 QPLFLVGDDPLSR-----QWLQQNAEELKQLGAVGLVVNV 97 (142)
T ss_pred CCEEEEcCCHHHH-----HHHHHHHHHHHHCCCeEEEEec
Confidence 4599999999987 5733222444443 4555544
No 81
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=23.72 E-value=75 Score=20.37 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=13.7
Q ss_pred HHHHcCCCCCC--CChHHHHHHH
Q 030697 141 DCICRGLSIKY--LTEDKVIDYI 161 (173)
Q Consensus 141 ~~l~~g~~~~~--lvp~~V~~yI 161 (173)
..|..|.-+-+ -||++|+.|+
T Consensus 48 AEL~~~~kLyD~gkVP~sVW~~V 70 (71)
T PRK10391 48 AELVSGGRLFDLGQVPKSVWHYV 70 (71)
T ss_pred HHHHhCccccccccCCHHHHHhc
Confidence 34455533333 6999999997
No 82
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=23.59 E-value=54 Score=24.84 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=18.3
Q ss_pred HHHHHHHhhhcccccCCCceEEEEeehhhhhh
Q 030697 44 LSRVKNFLIEAGLISTESLKVMLVCGSDLLES 75 (173)
Q Consensus 44 l~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~ 75 (173)
|+..++.||+ .++=|+|.|+...
T Consensus 142 i~eC~kayP~---------~yIRiigFDn~rq 164 (176)
T PLN02289 142 LEEAKKAYPN---------AFIRIIGFDNTRQ 164 (176)
T ss_pred HHHHHHHCCc---------ceEEEEEEECCCC
Confidence 4667788998 4899999998765
No 83
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=22.67 E-value=1e+02 Score=24.30 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCCCcccHHHHHHHHHcCCCCCCCChHHHHHHHHh
Q 030697 129 LVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRE 163 (173)
Q Consensus 129 ~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~ 163 (173)
...-.|++|++|+++.. ..+.||+.+.+.|..
T Consensus 136 D~SG~I~~sEL~~Al~~---~Gy~Lspq~~~~lv~ 167 (221)
T KOG0037|consen 136 DRSGTIDSSELRQALTQ---LGYRLSPQFYNLLVR 167 (221)
T ss_pred CCCCcccHHHHHHHHHH---cCcCCCHHHHHHHHH
Confidence 34469999999999965 447799999998864
No 84
>PF08483 IstB_IS21_ATP: IstB-like ATP binding N-terminal; InterPro: IPR013690 This bacterial domain is found to the N terminus of the IPR002611 from INTERPRO-like ATP binding domain in proteins which are putative transposase subunits [].
Probab=22.47 E-value=73 Score=16.87 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=9.0
Q ss_pred CCCHHHHHHHH
Q 030697 5 LISAEHRINLC 15 (173)
Q Consensus 5 ~~~~~~Rl~M~ 15 (173)
-.|+++|+.|+
T Consensus 11 ~LsFeERl~LL 21 (30)
T PF08483_consen 11 ELSFEERLGLL 21 (30)
T ss_pred hcCHHHHHHHH
Confidence 36899999886
No 85
>PF12728 HTH_17: Helix-turn-helix domain
Probab=21.85 E-value=1.6e+02 Score=16.63 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=22.6
Q ss_pred CcccHHHHHHHHHcCCCC-------CCCChHHHHHHHHhC
Q 030697 132 NQISSTRIRDCICRGLSI-------KYLTEDKVIDYIRES 164 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~~~-------~~lvp~~V~~yI~~~ 164 (173)
..||-+.|++.+++|.-. ..+-.++|.+||.++
T Consensus 11 l~is~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 11 LGISRSTVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HCcCHHHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 578888999998887421 123456778888765
No 86
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=21.67 E-value=65 Score=23.45 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=19.0
Q ss_pred HHHHHHHhhhcccccCCCceEEEEeehhhhhhC
Q 030697 44 LSRVKNFLIEAGLISTESLKVMLVCGSDLLESF 76 (173)
Q Consensus 44 l~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l 76 (173)
|+..++.||+ .++=|+|.|+....
T Consensus 68 i~~CrkayP~---------~yIRl~gFDn~rq~ 91 (138)
T CHL00130 68 INECRKQKPN---------GYIKVNAFDASRGV 91 (138)
T ss_pred HHHHHHHCCC---------cEEEEEEeeCCCcE
Confidence 4667788998 48899999998763
No 87
>PF06194 Phage_Orf51: Phage Conserved Open Reading Frame 51; InterPro: IPR009338 This entry is represented by the Staphylococcus phage PVL (bacteriophage phi-PVL), Orf51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.01 E-value=73 Score=20.73 Aligned_cols=18 Identities=22% Similarity=0.661 Sum_probs=14.9
Q ss_pred hHHHHHHHHhCCCCCCCC
Q 030697 154 EDKVIDYIRESRLYLNSN 171 (173)
Q Consensus 154 p~~V~~yI~~~~LY~~~~ 171 (173)
-.+-..||++|.||.+++
T Consensus 57 ~~Ef~~Yi~~~~L~~ee~ 74 (80)
T PF06194_consen 57 KEEFENYIKQHELYFEEA 74 (80)
T ss_pred HHHHHHHHHHcCCceehh
Confidence 467889999999998764
No 88
>KOG2406 consensus MADS box transcription factor [Transcription]
Probab=20.84 E-value=74 Score=28.40 Aligned_cols=117 Identities=14% Similarity=0.177 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHhhhccc-ccCCCceEEEEeehhhhhhCCCCCCCCcch---HHHHhhcccEEEEcCCCCChhhhhhhHH
Q 030697 39 RTLTVLSRVKNFLIEAGL-ISTESLKVMLVCGSDLLESFAIPGFWMPEQ---VWTICRNFGVICIRREGQDVEKIISDNE 114 (173)
Q Consensus 39 yTi~tl~~l~~~~p~~~~-~~~~~~~~~fliG~D~l~~l~~w~~W~~~~---~~~l~~~~~liv~~R~g~~~~~~~~~~~ 114 (173)
|-|-.|+.+.+.+|..-+ |.+.+.+|.+|=.+|.|.. |-+++ -+-.+..-++++++|...-...+...+.
T Consensus 97 fiVylL~eiska~~s~~aRi~D~DGEFLLIEAA~~LPk------Wldpens~nRVfi~gGel~Ilp~~s~a~s~~~~~Pp 170 (635)
T KOG2406|consen 97 FIVYLLREISKAFPSAFARIIDEDGEFLLIEAADSLPK------WLDPENSDNRVFIHGGELIILPPESEALSKMNRCPP 170 (635)
T ss_pred hhHHHHHHHHHhcCcceEEEEcCCCCEEeehhhhhccc------ccCcccccceEEEECCEEEEecccccchhhccCCCc
Confidence 667788888898987531 2333447888888887654 54431 1233444567777643221111100000
Q ss_pred HhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCC------------CCCCCChHHHHHHHHhC
Q 030697 115 ILDKNKGNIKLVDELVPNQISSTRIRDCICRGL------------SIKYLTEDKVIDYIRES 164 (173)
Q Consensus 115 ~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~------------~~~~lvp~~V~~yI~~~ 164 (173)
.+.. .-++++ ..+..--.|-.|+.+|.+.. -....||.+|...|+++
T Consensus 171 t~~~--al~fii-~~g~~~raS~evqsai~~Rlk~ypeka~~s~hRa~~~vP~sivqvLkq~ 229 (635)
T KOG2406|consen 171 TTRE--ALIFII-SSGSNLRASREVQSAISQRLKKYPEKAANSKHRAICTVPRSIVQVLKQN 229 (635)
T ss_pred cHHH--HHHHHH-hcccchhhhHHHHHHHHHHHHhchhhHHHhhhhheeeccHHHHHHHhhC
Confidence 0000 001111 12333455666666554421 12345899998888765
No 89
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=20.82 E-value=1.4e+02 Score=21.52 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHhC
Q 030697 137 TRIRDCICRGLSIKYLTEDKVIDYIRES 164 (173)
Q Consensus 137 T~IR~~l~~g~~~~~lvp~~V~~yI~~~ 164 (173)
.+||+.+.+|++ +++|.+|+.+.
T Consensus 64 ~~Vr~~i~~G~s-----d~eI~~~~v~R 86 (126)
T PRK10144 64 HQVYSMVAEGKS-----EVEIIGWMTER 86 (126)
T ss_pred HHHHHHHHcCCC-----HHHHHHHHHHh
Confidence 367788888864 78999998764
No 90
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=20.53 E-value=1e+02 Score=21.18 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEEeehhhh
Q 030697 41 LTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 73 (173)
Q Consensus 41 i~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l 73 (173)
+.-|+.+++.||+ +++=|+|.|+.
T Consensus 63 l~ei~~C~~~~p~---------~YVRliG~D~~ 86 (99)
T cd03527 63 LREIEACRKAYPD---------HYVRVVGFDNY 86 (99)
T ss_pred HHHHHHHHHHCCC---------CeEEEEEEeCC
Confidence 4456777788887 68999999986
No 91
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=20.52 E-value=1.1e+02 Score=21.70 Aligned_cols=48 Identities=6% Similarity=-0.054 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhc
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEA 54 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~ 54 (173)
...+...++..++.++.+...-.|..+.+. +..|. .+++.|+++|.+.
T Consensus 23 ~~~~d~~K~~~L~~~L~G~A~~~i~~~~~~--~~~Y~-~a~~~L~~~yg~~ 70 (145)
T PF03564_consen 23 PDLSDIEKLNYLRSCLKGEAKELIRGLPLS--EENYE-EAWELLEERYGNP 70 (145)
T ss_pred cCCCHHHHHHHHHHHhcchHHHHHHccccc--chhhH-HHHHHHHHHhCCc
Confidence 457889999999999998766555555542 22332 4678889999763
No 92
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=20.50 E-value=2.1e+02 Score=25.39 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhh
Q 030697 12 INLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 74 (173)
Q Consensus 12 l~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~ 74 (173)
.+-++++-+..|.+.+.|+.... . .-++.++.+++..|+. ++.+|-|.|-|.
T Consensus 38 ~eAleli~e~~pDiviTDI~MP~--m-dGLdLI~~ike~~p~~--------~~IILSGy~eFe 89 (475)
T COG4753 38 KEALELIQETQPDIVITDINMPG--M-DGLDLIKAIKEQSPDT--------EFIILSGYDEFE 89 (475)
T ss_pred HHHHHHHHhcCCCEEEEecCCCC--C-cHHHHHHHHHHhCCCc--------eEEEEeccchhH
Confidence 34566677778999999987532 1 2378999999999975 899999999875
No 93
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.44 E-value=1.3e+02 Score=25.40 Aligned_cols=21 Identities=0% Similarity=0.053 Sum_probs=16.8
Q ss_pred CCCccchHHHHHHHHHHhhhc
Q 030697 34 QSGYQRTLTVLSRVKNFLIEA 54 (173)
Q Consensus 34 ~~~~syTi~tl~~l~~~~p~~ 54 (173)
.+...+.+++++++|+.||+.
T Consensus 132 hGhs~~~i~~ik~ik~~~P~~ 152 (346)
T PRK05096 132 NGYSEHFVQFVAKAREAWPDK 152 (346)
T ss_pred CCcHHHHHHHHHHHHHhCCCC
Confidence 344558899999999999974
No 94
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=20.42 E-value=1.4e+02 Score=21.47 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHhC
Q 030697 137 TRIRDCICRGLSIKYLTEDKVIDYIRES 164 (173)
Q Consensus 137 T~IR~~l~~g~~~~~lvp~~V~~yI~~~ 164 (173)
.+||+.+.+|++ .++|.+|+.+.
T Consensus 64 ~~Vr~~i~~G~S-----d~eI~~~~v~R 86 (126)
T TIGR03147 64 HEVYSMVNEGKS-----NQQIIDFMTAR 86 (126)
T ss_pred HHHHHHHHcCCC-----HHHHHHHHHHh
Confidence 357788888864 78999998764
No 95
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=20.26 E-value=60 Score=19.33 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=11.2
Q ss_pred CCChHHHHHHHHhC
Q 030697 151 YLTEDKVIDYIRES 164 (173)
Q Consensus 151 ~lvp~~V~~yI~~~ 164 (173)
.-||+.|.+||.++
T Consensus 6 ~~lP~~v~~~i~~~ 19 (61)
T PF11396_consen 6 SELPAAVKNAIKKN 19 (61)
T ss_dssp GGS-HHHHHHHHHH
T ss_pred HHCCHHHHHHHHHH
Confidence 35999999999987
Done!