Query 030697
Match_columns 173
No_of_seqs 186 out of 1085
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 04:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nup_A FKSG76; NAD biosynthesi 100.0 6.1E-41 2.1E-45 266.8 18.3 164 2-171 55-237 (252)
2 1kqn_A Nmnat, nicotinamide mon 100.0 1.4E-40 4.7E-45 268.2 15.9 162 2-169 57-256 (279)
3 3h05_A Uncharacterized protein 100.0 2.3E-38 7.9E-43 239.8 10.2 128 2-171 42-174 (177)
4 1yum_A 'probable nicotinate-nu 100.0 1.5E-36 5.3E-41 240.1 16.5 152 4-170 69-233 (242)
5 2h29_A Probable nicotinate-nuc 100.0 9.4E-36 3.2E-40 227.3 11.6 141 3-168 48-188 (189)
6 1k4m_A NAMN adenylyltransferas 100.0 7.2E-35 2.5E-39 226.3 15.7 151 4-168 49-213 (213)
7 1kam_A Deamido-NAD(+), nicotin 100.0 5.7E-34 1.9E-38 218.3 14.3 141 3-168 53-193 (194)
8 2qtr_A Nicotinate (nicotinamid 100.0 5.4E-33 1.8E-37 211.5 15.2 141 3-168 48-188 (189)
9 3nd5_A Phosphopantetheine aden 99.9 7.7E-23 2.6E-27 153.7 7.0 120 2-168 42-162 (171)
10 3f3m_A Phosphopantetheine aden 99.8 8.2E-22 2.8E-26 147.7 6.0 115 2-164 43-158 (168)
11 1vlh_A Phosphopantetheine aden 99.8 5.5E-21 1.9E-25 143.8 5.4 116 2-165 52-168 (173)
12 1o6b_A Phosphopantetheine aden 99.8 1.3E-20 4.5E-25 140.8 5.5 121 2-170 42-163 (169)
13 1od6_A PPAT, phosphopantethein 99.8 5.5E-19 1.9E-23 130.6 5.7 114 4-165 44-158 (160)
14 1qjc_A Phosphopantetheine aden 99.8 8.2E-19 2.8E-23 129.3 6.0 115 2-164 41-156 (158)
15 3nbk_A Phosphopantetheine aden 99.7 1.2E-18 4.2E-23 131.1 5.8 115 2-164 61-175 (177)
16 1v47_A ATP sulfurylase; produc 99.7 4.2E-18 1.4E-22 140.6 8.2 135 2-164 195-348 (349)
17 1jhd_A Sulfate adenylyltransfe 99.7 1.6E-17 5.4E-22 139.1 8.9 135 2-164 234-390 (396)
18 1ej2_A Nicotinamide mononucleo 99.7 7.4E-18 2.5E-22 127.3 1.9 115 3-168 47-164 (181)
19 3k9w_A Phosphopantetheine aden 99.6 6E-16 2.1E-20 117.6 6.8 116 2-164 62-177 (187)
20 4f3r_A Phosphopantetheine aden 99.6 2.1E-16 7.3E-21 117.5 4.0 115 2-164 45-159 (162)
21 1f9a_A Hypothetical protein MJ 99.6 5.3E-16 1.8E-20 115.8 4.4 111 3-168 44-158 (168)
22 2qjo_A Bifunctional NMN adenyl 99.5 2.5E-14 8.6E-19 116.7 4.0 116 2-166 50-173 (341)
23 3nv7_A Phosphopantetheine aden 99.4 2.9E-14 9.8E-19 105.5 0.6 115 2-163 42-156 (157)
24 2qjt_B Nicotinamide-nucleotide 99.1 1.2E-10 4.1E-15 95.3 6.7 118 2-164 50-176 (352)
25 2b7l_A Glycerol-3-phosphate cy 98.7 2E-08 6.9E-13 71.3 6.8 84 3-147 47-130 (132)
26 1coz_A Protein (glycerol-3-pho 98.6 1.4E-07 4.7E-12 66.6 6.8 49 3-72 47-95 (129)
27 1r6x_A ATP:sulfate adenylyltra 98.3 2.8E-06 9.7E-11 70.9 9.4 136 2-168 228-388 (395)
28 1g8f_A Sulfate adenylyltransfe 98.1 9.5E-06 3.3E-10 69.9 9.0 133 2-163 229-386 (511)
29 1lw7_A Transcriptional regulat 97.9 2.6E-06 8.8E-11 70.1 2.0 35 3-38 53-88 (365)
30 2x0k_A Riboflavin biosynthesis 96.7 0.0022 7.7E-08 52.4 5.3 104 3-147 69-175 (338)
31 3op1_A Macrolide-efflux protei 96.3 0.027 9.2E-07 45.4 9.3 16 132-147 163-178 (308)
32 3glv_A Lipopolysaccharide core 96.1 0.0064 2.2E-07 43.3 4.5 26 2-28 47-72 (143)
33 1mrz_A Riboflavin kinase/FMN a 95.5 0.014 4.8E-07 46.7 4.6 95 3-147 51-148 (293)
34 3gmi_A UPF0348 protein MJ0951; 95.1 0.013 4.4E-07 48.2 3.4 31 133-163 226-258 (357)
35 3hl4_A Choline-phosphate cytid 94.2 0.16 5.5E-06 39.3 7.3 24 3-27 124-147 (236)
36 3do8_A Phosphopantetheine aden 91.4 0.19 6.5E-06 35.9 3.9 29 3-31 46-76 (148)
37 2gks_A Bifunctional SAT/APS ki 86.7 2.4 8.3E-05 36.5 8.1 32 132-163 330-363 (546)
38 3cr8_A Sulfate adenylyltranfer 78.9 7.7 0.00026 33.4 8.1 32 132-163 328-360 (552)
39 3elb_A Ethanolamine-phosphate 77.2 6.5 0.00022 31.8 6.7 23 3-26 53-75 (341)
40 1m8p_A Sulfate adenylyltransfe 74.0 20 0.00069 30.9 9.4 32 132-163 355-387 (573)
41 3elb_A Ethanolamine-phosphate 54.6 7.6 0.00026 31.5 2.8 48 3-71 248-295 (341)
42 1x6v_B Bifunctional 3'-phospho 52.7 13 0.00044 32.6 4.1 32 132-163 584-616 (630)
43 1v31_A Hypothetical protein RA 49.9 4.9 0.00017 26.2 0.8 21 150-170 29-49 (93)
44 1v32_A AT5G08430, hypothetical 47.5 7.3 0.00025 25.9 1.3 20 151-170 38-57 (101)
45 1xou_A ESPA; coiled coil, heli 43.9 4.8 0.00016 29.6 0.0 17 150-166 100-118 (192)
46 1uhr_A SWI/SNF related, matrix 38.4 16 0.00055 23.6 1.9 19 152-170 31-49 (93)
47 2kw0_A CCMH protein; oxidoredu 29.5 46 0.0016 21.5 3.0 21 138-163 48-68 (90)
48 3tvz_A Putative uncharacterize 28.9 23 0.00079 25.4 1.6 31 39-77 14-44 (172)
49 2hl7_A Cytochrome C-type bioge 28.7 49 0.0017 21.0 3.0 21 138-163 51-71 (84)
50 2jqt_A H-NS/STPA-binding prote 26.2 31 0.0011 21.3 1.6 23 140-162 47-71 (71)
51 4e38_A Keto-hydroxyglutarate-a 25.5 56 0.0019 24.8 3.3 119 8-163 45-167 (232)
52 3zxw_B Ribulose bisphosphate c 25.1 37 0.0013 23.1 1.9 25 41-74 70-94 (118)
53 1rbl_M Ribulose 1,5 bisphospha 24.6 49 0.0017 22.2 2.5 25 41-74 71-95 (109)
54 1svd_M Ribulose bisphosphate c 23.4 54 0.0019 22.0 2.5 25 41-74 73-97 (110)
55 1wdd_S Ribulose bisphosphate c 22.7 43 0.0015 23.1 1.9 26 41-75 83-108 (128)
56 4ae5_A Signal transduction pro 21.1 45 0.0015 24.0 1.9 29 40-76 10-38 (167)
57 3fj2_A Monooxygenase-like prot 20.5 56 0.0019 23.9 2.3 28 39-74 28-55 (186)
No 1
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=100.00 E-value=6.1e-41 Score=266.81 Aligned_cols=164 Identities=36% Similarity=0.671 Sum_probs=139.5
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHh-------------------hhcccccCCCc
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFL-------------------IEAGLISTESL 62 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~-------------------p~~~~~~~~~~ 62 (173)
|+.++++++|++|+++|++++|+|.|++||+.+.+++||++||++++++| |+. +.
T Consensus 55 k~~~~~~~~R~~m~~~ai~~~~~~~v~~~E~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~p~~------~~ 128 (252)
T 1nup_A 55 KKDLAASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAA------VP 128 (252)
T ss_dssp SSCCCCHHHHHHHHHHHGGGCSSEEECCHHHHSSSCCCHHHHHHHHHHHHC--------------------C------CC
T ss_pred CCCCCCHHHHHHHHHHHhcCCCceEeehHHhcCCCCCCHHHHHHHHHHHHhhccccccccccccccccCCCC------Cc
Confidence 55689999999999999999999999999999999999999999999999 320 13
Q ss_pred eEEEEeehhhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHH
Q 030697 63 KVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDC 142 (173)
Q Consensus 63 ~~~fliG~D~l~~l~~w~~W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~ 142 (173)
+++||||+|++.+|++|++|++++.++|++.|+|+|+.|+|.+..........+..+..+|++++.....+||||.||++
T Consensus 129 ~~~fiiGaD~l~~l~~p~~W~~~~~~~i~~~~~lvv~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~ 208 (252)
T 1nup_A 129 ELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRA 208 (252)
T ss_dssp EEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEECCTTCCHHHHHHHCHHHHHTGGGEEEECCCSCCCCCHHHHHHH
T ss_pred eEEEEEecchHhHCCCcCccCcchHHHHHhhCcEEEEECCCCChHHhhhhHHHHHhcCCCEEEEcCCCCCccCHHHHHHH
Confidence 89999999999999999999885458999999999999999986543322233444457899886333579999999999
Q ss_pred HHcCCCCCCCChHHHHHHHHhCCCCCCCC
Q 030697 143 ICRGLSIKYLTEDKVIDYIRESRLYLNSN 171 (173)
Q Consensus 143 l~~g~~~~~lvp~~V~~yI~~~~LY~~~~ 171 (173)
++.|++++++||++|.+||++|+||+.+.
T Consensus 209 ~~~g~~i~~lvP~~V~~yI~~~~LY~~~~ 237 (252)
T 1nup_A 209 LGQGQSVKYLIPDAVITYIKDHGLYTKGS 237 (252)
T ss_dssp HHTTCCCBTTBCHHHHHHHHHTTCSCC--
T ss_pred HHcCCCchhcCCHHHHHHHHHcCCcCCCc
Confidence 99999999999999999999999998653
No 2
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=100.00 E-value=1.4e-40 Score=268.18 Aligned_cols=162 Identities=43% Similarity=0.762 Sum_probs=139.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHh------------------------------
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFL------------------------------ 51 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~------------------------------ 51 (173)
|+.++++++|++|+++|+++.++|.|++||+.+.+++||++||++|+++|
T Consensus 57 K~~l~s~~~R~~ml~~ai~~~~~~~v~~~E~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (279)
T 1kqn_A 57 KKGLIPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSS 136 (279)
T ss_dssp CTTCCCHHHHHHHHHHHTTTCSSEEECCTGGGCSSCCCHHHHHHHHHHHHTC----------------------------
T ss_pred ccCCCCHHHHHHHHHHHhcCCCcEEEeccccccCCCCcHHHHHHHHHHHHhhcccccccccccccccccccccccccccc
Confidence 55689999999999999999999999999999999999999999999999
Q ss_pred --------hhcccccCCCceEEEEeehhhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCe
Q 030697 52 --------IEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNI 123 (173)
Q Consensus 52 --------p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i 123 (173)
|+ .+.+++||||+|++.+|++|++|++++.++|++.|+|+|+.|+|++..........+.++..+|
T Consensus 137 ~~~~~~~~p~------~~~~~~~i~GaD~l~~~~~p~~W~~~~~e~il~~~~lvv~~R~g~~~~~~~~~~~~l~~~~~~i 210 (279)
T 1kqn_A 137 QKKSLEPKTK------AVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDVLWKHRSNI 210 (279)
T ss_dssp ----------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEEESCHHHHHHHHHTCHHHHHTGGGE
T ss_pred cccccccCCC------CCccEEEEEehhhHhhCcCccccCcchHHHHHhhCcEEEEeCCCCChHhhhhhHHHHhhcCCcE
Confidence 32 0138999999999999999999998545899999999999999976544322233455556789
Q ss_pred EEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHHHhCCCCCC
Q 030697 124 KLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 169 (173)
Q Consensus 124 ~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~LY~~ 169 (173)
.+++.....+||||+||+++++|++++++||++|++||++|+||+.
T Consensus 211 ~~v~~~~~~~ISST~IR~~l~~g~si~~lvP~~V~~YI~~~~LY~~ 256 (279)
T 1kqn_A 211 HVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHNLYSS 256 (279)
T ss_dssp EEEECCSCCCCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHHTCCSH
T ss_pred EEECCCCCCccCHHHHHHHHHcCCChhhcCCHHHHHHHHHcCCcCC
Confidence 9986344689999999999999999999999999999999999974
No 3
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.3e-38 Score=239.80 Aligned_cols=128 Identities=21% Similarity=0.230 Sum_probs=106.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCC--ceeechhhhc--CCC-ccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhC
Q 030697 2 IQGLISAEHRINLCNLACKSSD--FIMVDPWEAN--QSG-YQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESF 76 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~--~~~v~~~E~~--~~~-~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l 76 (173)
|++.+++++|++|+++|++++| ++.|+++|.+ +++ +|||+|||++|+++||+. +|+||||+|++.+|
T Consensus 42 k~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~~l~~~~~~syT~dTl~~l~~~~p~~--------~~~~iiG~D~l~~l 113 (177)
T 3h05_A 42 GKNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQALYQPGQSVTTYALLEKIQEIYPTA--------DITFVIGPDNFFKF 113 (177)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCCTTEEECCHHHHHC----CCCHHHHHHHHHHHSTTS--------EEEEEECHHHHHTG
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCcEEEEehhhhcccCCCCcchHHHHHHHHHHhcCC--------CeEEEEecchhhhc
Confidence 5678999999999999999875 8999999987 666 999999999999999986 89999999999999
Q ss_pred CCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHH
Q 030697 77 AIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDK 156 (173)
Q Consensus 77 ~~w~~W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~ 156 (173)
++|++| ++|++.|+++|++| ..+||||+||+++++|++++++||++
T Consensus 114 ~~W~~~-----~~l~~~~~~vv~~r-----------------------------~~~iSST~IR~~i~~g~~~~~lvp~~ 159 (177)
T 3h05_A 114 AKFYKA-----EEITERWTVMACPE-----------------------------KVKIRSTDIRNALIEGKDISTYTTPT 159 (177)
T ss_dssp GGSTTH-----HHHHHHSEEEECCC-----------------------------SSCCCHHHHHHHHHHTCCCTTTSCHH
T ss_pred ccchhH-----HHHHHhCCEEEEcC-----------------------------CCCCcHHHHHHHHHcCCChhHhCCHH
Confidence 976666 89999999999976 24999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC
Q 030697 157 VIDYIRESRLYLNSN 171 (173)
Q Consensus 157 V~~yI~~~~LY~~~~ 171 (173)
|.+||++|+||+.+.
T Consensus 160 V~~yI~~~~LY~~~~ 174 (177)
T 3h05_A 160 VSELLLNEGLYRETL 174 (177)
T ss_dssp HHHHHHC--------
T ss_pred HHHHHHHcCCCCCcc
Confidence 999999999998765
No 4
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=100.00 E-value=1.5e-36 Score=240.13 Aligned_cols=152 Identities=22% Similarity=0.354 Sum_probs=129.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHh-hhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~-p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
.++++++|++|+++|+++.+++.|+++|+++++++||++||++++++| |+. +++||||+|++.+|++|+.|
T Consensus 69 ~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~sytvdtl~~l~~~~~p~~--------~~~fI~G~D~l~~l~~W~~~ 140 (242)
T 1yum_A 69 PQVSAAQRLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADD--------QLFMLIGWDAFCGLPTWHRW 140 (242)
T ss_dssp TTCCHHHHHHHHHHHHTTCTTEEECCGGGGSSSSCCHHHHHHHHHHHSCTTC--------EEEEEEEHHHHTTGGGSTTG
T ss_pred CCCCHHHHHHHHHHHhcCCCeEEEeeeeecCCCCCCHHHHHHHHHHHhCCCC--------cEEEEEehhHhhhhhhhcCH
Confidence 578999999999999999999999999999999999999999999999 875 89999999999999976665
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhh-----HHH-------hhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCC
Q 030697 83 MPEQVWTICRNFGVICIRREGQDVEKIISD-----NEI-------LDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIK 150 (173)
Q Consensus 83 ~~~~~~~l~~~~~liv~~R~g~~~~~~~~~-----~~~-------l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~ 150 (173)
++|++.|+++|++|+ +.......+ ... +....++|.+++ .+..+||||+||+.++.|++++
T Consensus 141 -----~~i~~~~~~vv~~R~-~~~~~~~~e~~~~~~~~~~~~~~~L~~~~~~i~~~~-~~~~~ISST~IR~~i~~g~~i~ 213 (242)
T 1yum_A 141 -----EALLDHCHIVVLQRP-DADSEPPESLRDLLAARSVADPQALKGPGGQITFVW-QTPLAVSATQIRALLGAGRSVR 213 (242)
T ss_dssp -----GGSTTTCEEEEEECS-SSCCCCCGGGHHHHHHHBCSCGGGCCSSSCCEEEEE-CCCCSCCHHHHHHHHHTTCCCB
T ss_pred -----HHHHhhCcEEEEECC-CchhhhhHHHHHHHHHhhccchhhhccCCCeEEEec-CCCCcCcHHHHHHHHHcCCChh
Confidence 899999999999999 332211000 000 101234788885 5678999999999999999999
Q ss_pred CCChHHHHHHHHhCCCCCCC
Q 030697 151 YLTEDKVIDYIRESRLYLNS 170 (173)
Q Consensus 151 ~lvp~~V~~yI~~~~LY~~~ 170 (173)
++||++|.+||++|+||+.+
T Consensus 214 ~lVP~~V~~yI~~~~LY~~~ 233 (242)
T 1yum_A 214 FLVPDAVLNYIEAHHLYRAP 233 (242)
T ss_dssp TTBCHHHHHHHHHTTTTCCC
T ss_pred HcCCHHHHHHHHHhCCcCCC
Confidence 99999999999999999865
No 5
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=100.00 E-value=9.4e-36 Score=227.32 Aligned_cols=141 Identities=19% Similarity=0.252 Sum_probs=127.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
+.++++++|++|+++|+++.|++.|+++|++++|++||++||+++++.||+. +++||+|+|++.+|+.|+.|
T Consensus 48 ~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~~~~~syt~dtl~~l~~~~p~~--------~~~~i~G~D~~~~~~~W~~~ 119 (189)
T 2h29_A 48 HDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDS--------ELYFVIGTDQYNQLEKWYQI 119 (189)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTCCEECCHHHHHCSBCCHHHHHHHHHHHSTTE--------EEEEEEEHHHHTTGGGSTTH
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEehHHhcCCCCCCHHHHHHHHHHHCCCC--------cEEEEEecchhhhhccccCH
Confidence 4578999999999999999999999999999999999999999999999986 89999999999999965444
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 030697 83 MPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIR 162 (173)
Q Consensus 83 ~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~ 162 (173)
++|++.++++|++|+|+... ...++.+++ .+..+||||.||+.++.|++++++||++|.+||+
T Consensus 120 -----~~i~~~~~~~v~~R~~~~~~-----------~~~~i~~~~-~~~~~ISST~IR~~i~~g~~~~~lvP~~V~~yI~ 182 (189)
T 2h29_A 120 -----EYLKEMVTFVVVNRDKNSQN-----------VENAMIAIQ-IPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIK 182 (189)
T ss_dssp -----HHHHHHCEEEEECCSSSCCC-----------CCTTSEEEC-CCCBCCCHHHHHHHHHTTCCCBTTBCHHHHHHHH
T ss_pred -----HHHHhhCcEEEEECCCCccc-----------cCCcEEEEc-CCCCccCHHHHHHHHHcCCChhhcCCHHHHHHHH
Confidence 89999999999999987532 135778885 5668999999999999999999999999999999
Q ss_pred hCCCCC
Q 030697 163 ESRLYL 168 (173)
Q Consensus 163 ~~~LY~ 168 (173)
+|+||+
T Consensus 183 ~~~LY~ 188 (189)
T 2h29_A 183 GEGLYE 188 (189)
T ss_dssp HHTTTC
T ss_pred HhCCcc
Confidence 999997
No 6
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=100.00 E-value=7.2e-35 Score=226.30 Aligned_cols=151 Identities=24% Similarity=0.251 Sum_probs=128.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHh-hhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~-p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
.++++++|++|+++|+++.+++.|+++|.++.+++||++|++++++.| |+. +++||+|+|++.+|++|++|
T Consensus 49 ~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~s~t~~~l~~l~~~~~~~~--------~~~~i~G~D~~~~l~~W~~~ 120 (213)
T 1k4m_A 49 PEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDV--------PLAFIIGQDSLLTFPTWYEY 120 (213)
T ss_dssp CSSCHHHHHHHHHHHHTTCTTEEECCHHHHCSSCCCHHHHHHHHHHHHCTTS--------CEEEEEEHHHHHHGGGSTTH
T ss_pred CCCCHHHHHHHHHHHhccCCCEEEeHHHhcCCCCCcHHHHHHHHHHHhCCCC--------cEEEEEehhhhhhhhccCCH
Confidence 578999999999999999999999999999999999999999999996 664 89999999999999966555
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhh---hhh--HH-------Hhhh-cCCCeEEEcCCCCCcccHHHHHHHHHcCCCC
Q 030697 83 MPEQVWTICRNFGVICIRREGQDVEKI---ISD--NE-------ILDK-NKGNIKLVDELVPNQISSTRIRDCICRGLSI 149 (173)
Q Consensus 83 ~~~~~~~l~~~~~liv~~R~g~~~~~~---~~~--~~-------~l~~-~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~ 149 (173)
++|++.|+++|++|+|.+.... ... .. .+.. ..++|.+++ .+..+||||.||+.++.|+++
T Consensus 121 -----~~i~~~~~~vv~~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~iSST~IR~~i~~g~~i 194 (213)
T 1k4m_A 121 -----ETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAE-TPWFNISATIIRERLQNGESC 194 (213)
T ss_dssp -----HHHHHHCEEEEECCTTCCSSCSSHHHHHHHHHHBCSCTTHHHHSSSCCEEEEC-CCCCCCCHHHHHHHHHTTCCC
T ss_pred -----HHHHhhCcEEEEECCCCchhhhhhHHHHHHhhhhcchhhhhhhccCCeEEEEe-CCcccCCHHHHHHHHHcCCCc
Confidence 8999999999999999853211 000 00 1111 234788885 667899999999999999999
Q ss_pred CCCChHHHHHHHHhCCCCC
Q 030697 150 KYLTEDKVIDYIRESRLYL 168 (173)
Q Consensus 150 ~~lvp~~V~~yI~~~~LY~ 168 (173)
+++||++|.+||++|+||+
T Consensus 195 ~~lvP~~V~~yI~~~~LY~ 213 (213)
T 1k4m_A 195 EDLLPEPVLTYINQQGLYR 213 (213)
T ss_dssp TTTSCHHHHHHHHHHTTTC
T ss_pred hhcCCHHHHHHHHHcCCCC
Confidence 9999999999999999995
No 7
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=100.00 E-value=5.7e-34 Score=218.26 Aligned_cols=141 Identities=24% Similarity=0.350 Sum_probs=124.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
+.++++++|++|+++|+++.+++.|+++|+++.+++||++||++++.+||+. +++||+|+|++.+|++ |
T Consensus 53 ~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~~~t~~~l~~l~~~~p~~--------~~~~v~G~D~~~~~~~---W 121 (194)
T 1kam_A 53 EDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPND--------QLFFIIGADMIEYLPK---W 121 (194)
T ss_dssp ----CHHHHHHHHHHHHTTCTTEEECCGGGSTTCCCSHHHHHHHHHHHSTTS--------EEEEEEETTTTTTCCC---C
T ss_pred cCCCCHHHHHHHHHHHHcCCCCeEEeHHHhcCCCCCChHHHHHHHHHHCCCC--------cEEEEEecchhhhhcc---c
Confidence 3578999999999999999999999999999999999999999999999986 8999999999999995 5
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 030697 83 MPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIR 162 (173)
Q Consensus 83 ~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~ 162 (173)
+++ ++|++.++++|++|+|.... + +.++.+++ .+..+||||.||+.++.|++++++||++|.+||+
T Consensus 122 ~~~--e~i~~~~~~~v~~R~g~~~~--------l---~~~i~~~~-~~~~~ISST~IR~~i~~g~~~~~lvP~~V~~yI~ 187 (194)
T 1kam_A 122 YKL--DELLNLIQFIGVKRPGFHVE--------T---PYPLLFAD-VPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVE 187 (194)
T ss_dssp HHH--HHHHHHSEEEEEECSSCCCC--------C---SSCCEEEE-CCCBCCCHHHHHHHHHHTCCCTTTSCHHHHHHHH
T ss_pred cCH--HHHHHhCcEEEEECCCcchh--------c---CCCEEEeC-CCCCCcCHHHHHHHHHcCCCchhhCCHHHHHHHH
Confidence 554 89999999999999986521 1 25788885 5567999999999999999999999999999999
Q ss_pred hCCCCC
Q 030697 163 ESRLYL 168 (173)
Q Consensus 163 ~~~LY~ 168 (173)
+|+||+
T Consensus 188 ~~~LY~ 193 (194)
T 1kam_A 188 ENGLYE 193 (194)
T ss_dssp HTTCSC
T ss_pred HcCCcc
Confidence 999997
No 8
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=100.00 E-value=5.4e-33 Score=211.53 Aligned_cols=141 Identities=20% Similarity=0.300 Sum_probs=126.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
+.++++++|++|+++|+++.+++.|+++|.++.+++||++|+++++.+||+. +++||+|+|++.+++. |
T Consensus 48 ~~~~~~~~R~~ml~~~~~~~~~v~v~~~e~~~~~~~~~~~~l~~l~~~~p~~--------~~~~v~G~D~~~~~~~---w 116 (189)
T 2qtr_A 48 RNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDV--------QFHFIIGGDMVEYLPK---W 116 (189)
T ss_dssp SCCCCHHHHHHHHHHHHTTCTTEEECCTGGGSCSCCCHHHHHHHHHHHCTTC--------EEEEEEEHHHHHHGGG---S
T ss_pred CCCCCHHHHHHHHHHHhCCCCCEEEehHHhcCCCCCCHHHHHHHHHHHCCCC--------CEEEEEehhhhhhhhc---c
Confidence 4578999999999999999999999999999999999999999999999986 8999999999999995 5
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 030697 83 MPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIR 162 (173)
Q Consensus 83 ~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~ 162 (173)
+++ ++|++.++++|++|+|+... ...++.+++ .+..+||||.||+.++.|++++++||++|.+||+
T Consensus 117 ~~~--~~l~~~~~~~v~~r~~~~~~-----------~~~~v~~~~-~~~~~iSST~IR~~l~~g~~~~~lvP~~V~~yI~ 182 (189)
T 2qtr_A 117 YNI--EALLDLVTFVGVARPGYKLR-----------TPYPITTVE-IPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIE 182 (189)
T ss_dssp TTH--HHHTTTCEEEEECCTTCCCC-----------CSSCCEEEC-CCCCCCCHHHHHHHHHTTCCCTTTSCHHHHHHHH
T ss_pred CCH--HHHHHhCCEEEEECCCCCcc-----------CCceEEEEc-CCCCccCHHHHHHHHHcCCCchhcCCHHHHHHHH
Confidence 543 89999999999999987531 012677775 5567999999999999999999999999999999
Q ss_pred hCCCCC
Q 030697 163 ESRLYL 168 (173)
Q Consensus 163 ~~~LY~ 168 (173)
+|+||+
T Consensus 183 ~~~lY~ 188 (189)
T 2qtr_A 183 RNGLYE 188 (189)
T ss_dssp HTTGGG
T ss_pred HcCCcC
Confidence 999997
No 9
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.87 E-value=7.7e-23 Score=153.66 Aligned_cols=120 Identities=14% Similarity=0.112 Sum_probs=89.4
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceee-chhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMV-DPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPG 80 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v-~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~ 80 (173)
|+++++.++|++|+++|+++.|++.| +++| +||+||++.++. + +||+|.|++.+|+
T Consensus 42 K~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e------~~tvd~~~~l~~-------------~-~~i~G~~~~~d~~--- 98 (171)
T 3nd5_A 42 KQTLFTPEEKKYLIEEATKEMPNVRVIMQET------QLTVESAKSLGA-------------N-FLIRGIRNVKDYE--- 98 (171)
T ss_dssp ---CCCHHHHHHHHHHHHTTCTTEEEEEECS------SCHHHHHHHHTC-------------C-EEEEEECSHHHHH---
T ss_pred CCCCCCHHHHHHHHHHHHccCCCEEEeeCCC------CcHHHHHHHCCC-------------C-EEEECCCchhhhH---
Confidence 67789999999999999999999999 9988 599999976631 2 8999999887743
Q ss_pred CCCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHH
Q 030697 81 FWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDY 160 (173)
Q Consensus 81 ~W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~y 160 (173)
..++++.+ +|. +....+.++++..+...+||||.||+.++.|++++++||++|.+|
T Consensus 99 --------~e~~la~~---nr~-------------l~~~~etv~l~~~~~~~~ISST~IRe~~~~g~~i~~lVP~~V~~~ 154 (171)
T 3nd5_A 99 --------YEKDIAKM---NQH-------------LAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHA 154 (171)
T ss_dssp --------HHHHHHHH---HHH-------------HCTTSEEEEEECCGGGTTCCHHHHHHHHHTTCCCGGGSCHHHHHH
T ss_pred --------HHHHHHHH---hhh-------------hcCCccEEEEeCCccccccchHHHHHHHHcCCChhHhCCHHHHHH
Confidence 33444443 442 111124677775333459999999999999999999999999999
Q ss_pred HHhCCCCC
Q 030697 161 IRESRLYL 168 (173)
Q Consensus 161 I~~~~LY~ 168 (173)
|++++||-
T Consensus 155 i~~~~~y~ 162 (171)
T 3nd5_A 155 LKQKKNDW 162 (171)
T ss_dssp HHHC----
T ss_pred HHHhhccc
Confidence 99999995
No 10
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.85 E-value=8.2e-22 Score=147.67 Aligned_cols=115 Identities=14% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+++++.++|++|+++|+++.|++.|+++| +||+||++.++. -+||+|.|++.+|.
T Consensus 43 K~~~~~~~~R~~ml~~a~~~~~~v~v~~~e------~~tvd~~~~l~~--------------~~~I~G~d~~~d~~---- 98 (168)
T 3f3m_A 43 KEGTFSLEERMDLIEQSVKHLPNVKVHQFS------GLLVDYCEQVGA--------------KTIIRGLRAVSDFE---- 98 (168)
T ss_dssp --CCSCHHHHHHHHHHHTTTCTTEEEEECC------SCHHHHHHHHTC--------------CEEEEEECTTCCHH----
T ss_pred CCCCCCHHHHHHhHHHHhcCCCCEEEEEcC------CCHHHHHHHcCC--------------CEEEEcCCchhhhh----
Confidence 677899999999999999999999999999 399999977632 27999999886643
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCc-ccHHHHHHHHHcCCCCCCCChHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQ-ISSTRIRDCICRGLSIKYLTEDKVIDY 160 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~-ISST~IR~~l~~g~~~~~lvp~~V~~y 160 (173)
| + .++.. ++|. +....+.|++++ .+..+ ||||.||+.++.|++++++||++|.+|
T Consensus 99 ~-e---~~~a~------~~r~-------------l~~~~e~v~l~~-~p~~~~ISST~IRe~~~~g~~i~~lvP~~V~~~ 154 (168)
T 3f3m_A 99 Y-E---LRLTS------MNKK-------------LNNEIETLYMMS-STNYSFISSSIVKEVAAYRADISEFVPPYVEKA 154 (168)
T ss_dssp H-H---HHHHH------HHHH-------------HCTTSEEEEEEC-CTTTTTCCHHHHHHHHHTTCCCTTTSCHHHHHH
T ss_pred H-H---HHHhH------HhHh-------------hCCCCcEEEEeC-CcccccccHHHHHHHHHcCCChhHHCCHHHHHH
Confidence 3 1 13332 2332 111124677775 56666 999999999999999999999999999
Q ss_pred HHhC
Q 030697 161 IRES 164 (173)
Q Consensus 161 I~~~ 164 (173)
|+++
T Consensus 155 i~~~ 158 (168)
T 3f3m_A 155 LKKK 158 (168)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 11
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.82 E-value=5.5e-21 Score=143.80 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=90.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|++++++++|++|+++|+++.|++.|+++| + ||++|+++++. + +||.| |.+|+.
T Consensus 52 kk~~~~~~~R~~ml~~a~~~~~~v~v~~~e----~--~tvd~l~~l~~-------------~-~~i~g------l~~w~d 105 (173)
T 1vlh_A 52 KKCMFTLEERKKLIEEVLSDLDGVKVDVHH----G--LLVDYLKKHGI-------------K-VLVRG------LRAVTD 105 (173)
T ss_dssp CCCSSCHHHHHHHHHHHTTTCTTEEEEEEC----S--CHHHHHHHHTC-------------C-EEEEE------ECTTSC
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCEEEecCc----c--hHHHHHHHhCC-------------C-eEEeC------CCcccc
Confidence 567899999999999999999999999998 3 99999987752 2 46655 565544
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCc-ccHHHHHHHHHcCCCCCCCChHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQ-ISSTRIRDCICRGLSIKYLTEDKVIDY 160 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~-ISST~IR~~l~~g~~~~~lvp~~V~~y 160 (173)
| +.++ ++++++|++.+. ...++++. .+..+ ||||.||+.++.|++++++||++|.+|
T Consensus 106 ~-----~~~~---~~~~~~r~~~~~-------------~~~i~l~~-~~~~~~iSST~IR~~i~~g~~i~~lvP~~V~~y 163 (173)
T 1vlh_A 106 Y-----EYEL---QMALANKKLYSD-------------LETVFLIA-SEKFSFISSSLVKEVALYGGDVTEWVPPEVARA 163 (173)
T ss_dssp H-----HHHH---HHHHHHHHHSTT-------------CEEEEEEC-CGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHH
T ss_pred h-----hhcc---chhhcCCCCCCC-------------CcEEEEeC-CCCCCceeHHHHHHHHHcCCChhHcCCHHHHHH
Confidence 5 5555 567788875421 13556664 44445 999999999999999999999999999
Q ss_pred HHhCC
Q 030697 161 IRESR 165 (173)
Q Consensus 161 I~~~~ 165 (173)
|.+|.
T Consensus 164 I~~~~ 168 (173)
T 1vlh_A 164 LNEKL 168 (173)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99874
No 12
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.81 E-value=1.3e-20 Score=140.76 Aligned_cols=121 Identities=15% Similarity=0.066 Sum_probs=91.3
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+.++++++|++|+++|+++.+++.|+++| +||++|++.++ + + +|++|.|.+.++.
T Consensus 42 k~~l~~~~~R~~ml~~a~~~~~~v~v~~~e------~~~~~~l~~l~---~----------~-~~i~G~d~~~~~~---- 97 (169)
T 1o6b_A 42 KKPLFSVEERCELLREVTKDIPNITVETSQ------GLLIDYARRKN---A----------K-AILRGLRAVSDFE---- 97 (169)
T ss_dssp SCCSSCHHHHHHHHHHHHTTCTTEEEEECS------SCHHHHHHHTT---C----------S-EEEEEECSGGGHH----
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCEEEcccc------hHHHHHHHHcC---C----------C-EEEEcCccccchH----
Confidence 456899999999999999999999999988 59999986543 2 2 8999999876643
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCC-CCcccHHHHHHHHHcCCCCCCCChHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELV-PNQISSTRIRDCICRGLSIKYLTEDKVIDY 160 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~-~~~ISST~IR~~l~~g~~~~~lvp~~V~~y 160 (173)
... ++++++|++.. ..+.+.++. .+ ..+||||.||+.++.|++++++||++|.+|
T Consensus 98 -------~~~---~~~~~~r~~~~-------------~~~~i~~~~-~~~~~~ISST~IR~~l~~G~~~~~~vP~~V~~y 153 (169)
T 1o6b_A 98 -------YEM---QGTSVNRVLDE-------------SIETFFMMA-NNQYSFLSSSIVKEVARYDGSVSEFVPPEVELA 153 (169)
T ss_dssp -------HHH---HHHHHHHHHCT-------------TSEEEEEEC-CSTTTTCCHHHHHHHHHTTCCCTTTSCHHHHHH
T ss_pred -------HHH---HHHHHhccccC-------------CCCEEEEEC-CCCCCcCcHHHHHHHHHcCCChhHHCCHHHHHH
Confidence 111 12234443221 012344553 33 348999999999999999999999999999
Q ss_pred HHhCCCCCCC
Q 030697 161 IRESRLYLNS 170 (173)
Q Consensus 161 I~~~~LY~~~ 170 (173)
|++++||+..
T Consensus 154 i~~~~ly~~~ 163 (169)
T 1o6b_A 154 LQQKFRQGGS 163 (169)
T ss_dssp HHHHHHSCSC
T ss_pred HHHhhCcCCC
Confidence 9999999854
No 13
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.76 E-value=5.5e-19 Score=130.62 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCCC
Q 030697 4 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWM 83 (173)
Q Consensus 4 ~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W~ 83 (173)
.++++++|++|+++|+++.+++.|+++| + ||++|+++++ . + +||+|.| +|+.|
T Consensus 44 ~~~~~~~R~~ml~~a~~~~~~v~v~~~e----~--~~~~~l~~l~----~---------~-~~v~G~d------~~~~~- 96 (160)
T 1od6_A 44 YLFSAEERLAIIREATAHLANVEAATFS----G--LLVDFVRRVG----A---------Q-AIVKGLR------AVSDY- 96 (160)
T ss_dssp CSSCHHHHHHHHHHHTTTCTTEEEEEEC----S--CHHHHHHHTT----C---------S-EEEEEEC------TTSCH-
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecC----c--hHHHHHHHcC----C---------C-EEEEeCC------cccch-
Confidence 5789999999999999999999999998 2 9999986553 1 2 7999977 34344
Q ss_pred cchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCC-CCcccHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 030697 84 PEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELV-PNQISSTRIRDCICRGLSIKYLTEDKVIDYIR 162 (173)
Q Consensus 84 ~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~-~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~ 162 (173)
+.+.+.+ ++.|++.. .-..+.++. .+ ..+||||.||+.++.|++++++||++|.+||+
T Consensus 97 ----~~~~~~~---~~~r~~~~-------------~~~~i~~~~-~~~~~~ISST~IR~~l~~G~~~~~~vP~~V~~~I~ 155 (160)
T 1od6_A 97 ----EYELQMA---HLNRQLYP-------------GLETLFILA-ATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALK 155 (160)
T ss_dssp ----HHHHHHH---HHHHHHTT-------------TCEEEEEEC-CGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHH
T ss_pred ----HHHHHHH---HhCcCCCC-------------CCCEEEEeC-CCCCCcccHHHHHHHHHcCCChhHHCCHHHHHHHH
Confidence 3333322 23343210 012455553 33 35899999999999999999999999999999
Q ss_pred hCC
Q 030697 163 ESR 165 (173)
Q Consensus 163 ~~~ 165 (173)
+|.
T Consensus 156 ~~~ 158 (160)
T 1od6_A 156 AKL 158 (160)
T ss_dssp HHT
T ss_pred HHh
Confidence 863
No 14
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.75 E-value=8.2e-19 Score=129.34 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=83.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+.++++++|++|+++|+.+.+++.++++| +||++||++++ + + +||+|.|. |..
T Consensus 41 k~~~~~~~~R~~ml~~a~~~~~~v~v~~~~------~~~~~~l~~l~---~----------~-~~v~G~d~------~~~ 94 (158)
T 1qjc_A 41 KKPMFTLEERVALAQQATAHLGNVEVVGFS------DLMANFARNQH---A----------T-VLIRGLRA------VAD 94 (158)
T ss_dssp SCCSSCHHHHHHHHHHHTTTCTTEEEEEEC------SCHHHHHHHTT---C----------C-EEEEECCT------TCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEcccc------hHHHHHHHHcC---C----------C-EEEEeccc------hhh
Confidence 456889999999999999999999999998 38999886552 2 2 89999864 223
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCC-CcccHHHHHHHHHcCCCCCCCChHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDY 160 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~-~~ISST~IR~~l~~g~~~~~lvp~~V~~y 160 (173)
| +.+.+.+ +++|.+.. ....+.++. .+. ..||||.||++++.|++++++||++|.+|
T Consensus 95 ~-----~~~~~~~---~~~r~~~~-------------~~~~i~~~~-~~~~~~iSST~IR~~i~~g~~~~~~vP~~V~~y 152 (158)
T 1qjc_A 95 F-----EYEMQLA---HMNRHLMP-------------ELESVFLMP-SKEWSFISSSLVKEVARHQGDVTHFLPENVHQA 152 (158)
T ss_dssp H-----HHHHHHH---HHHHHHCT-------------TSEEEEECC-CGGGTTCCHHHHHHHHHTTCCCGGGSCHHHHHH
T ss_pred h-----HHHHHHH---HhCccCCC-------------CCCEEEEEC-CCCCCccCHHHHHHHHHcCCChhHhCCHHHHHH
Confidence 4 3333322 13333110 012344553 344 47999999999999999999999999999
Q ss_pred HHhC
Q 030697 161 IRES 164 (173)
Q Consensus 161 I~~~ 164 (173)
|++|
T Consensus 153 I~~~ 156 (158)
T 1qjc_A 153 LMAK 156 (158)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9886
No 15
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.74 E-value=1.2e-18 Score=131.07 Aligned_cols=115 Identities=11% Similarity=0.091 Sum_probs=88.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|++++++++|++|+++|+++.|+++|+++| +||+|+++.+. . -+||.|.|++.+|+
T Consensus 61 K~~~~s~eeR~~mv~~a~~~~~~v~V~~~e------~l~vd~~~~~~----a----------~~ivrGlr~~~Dfe---- 116 (177)
T 3nbk_A 61 KTGMFDLDERIAMVKESTTHLPNLRVQVGH------GLVVDFVRSCG----M----------TAIVKGLRTGTDFE---- 116 (177)
T ss_dssp SCCSSCHHHHHHHHHHHCTTCTTEEEEECC------SCHHHHHHHTT----C----------CEEEEEECTTCCHH----
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCEEEEecC------chHHHHHHHcC----C----------CEEEECCCchhHHH----
Confidence 778999999999999999999999999998 48999986532 1 27888887666543
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYI 161 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI 161 (173)
..++++.+ +|. + ...+.++++.......||||.||+.++.|++++++||+.|.+||
T Consensus 117 -------ye~~~a~~---nr~-------------l-~~ietvfl~~~~~~~~ISST~IRe~~~~ggdv~~lVP~~V~~~l 172 (177)
T 3nbk_A 117 -------YELQMAQM---NKH-------------I-AGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRL 172 (177)
T ss_dssp -------HHHHHHHH---HHH-------------H-HCCEEEEEECCGGGSSCCHHHHHHHHHTTCCCGGGSCHHHHHHH
T ss_pred -------HHHHHHHH---HHh-------------c-CCCceEEEeCCCcccccchHHHHHHHHcCCChhHhCCHHHHHHH
Confidence 23333332 331 2 22346777753445799999999999999999999999999999
Q ss_pred HhC
Q 030697 162 RES 164 (173)
Q Consensus 162 ~~~ 164 (173)
+++
T Consensus 173 ~~~ 175 (177)
T 3nbk_A 173 RDR 175 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 16
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=99.73 E-value=4.2e-18 Score=140.55 Aligned_cols=135 Identities=12% Similarity=0.051 Sum_probs=106.9
Q ss_pred CCCCCCHHHHHHHHHHHhcCC-Cc----eeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhh--h
Q 030697 2 IQGLISAEHRINLCNLACKSS-DF----IMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL--E 74 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~-~~----~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l--~ 74 (173)
|...+++++|++|++++++++ |. +.+..+|.+..|++||+ +.++..+++++ . +||+|.|.+ .
T Consensus 195 K~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~m~~aGPreai--lhaiirkn~G~--------t-~fIVGrDhag~~ 263 (349)
T 1v47_A 195 KPDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPMRYAGPKEAV--FHALVRKNFGA--------T-HFLVGRDHAGVG 263 (349)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCCCCCTHHHHH--HHHHHHHHTTC--------S-EEEECTTTTCST
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCcceEEEechHHhhcCCcHHHH--HHHHHHHcCCC--------c-EEEECcCCCCcc
Confidence 667899999999999999996 87 77888899999999986 77755555553 4 999999998 6
Q ss_pred hCCCCCCCCcchHHHHhhcc-----cEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcC------CCCCcccHHHHHHHH
Q 030697 75 SFAIPGFWMPEQVWTICRNF-----GVICIRREGQDVEKIISDNEILDKNKGNIKLVDE------LVPNQISSTRIRDCI 143 (173)
Q Consensus 75 ~l~~w~~W~~~~~~~l~~~~-----~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~------~~~~~ISST~IR~~l 143 (173)
+|. .|+++ ++|++.+ .++++.|.++.... ..+..+.. ....+||||+||+++
T Consensus 264 ~~y---~~~~a--q~i~~~~~~l~i~~v~~~~~~Y~~~~------------~~~~~~~~~p~~~~~~~~~ISgT~iR~~L 326 (349)
T 1v47_A 264 DFY---DPYAA--HRIFDRLPPLGIEIVKVGAVFHCPLC------------GGIASERTCPEGHREKRTAISMTKVRALL 326 (349)
T ss_dssp TCS---CTTHH--HHGGGGSCCCSSEEEECCCEEEETTT------------TEEEETTTSCGGGGGGCEECCHHHHHHHH
T ss_pred ccc---CcccH--HHHHHhhhhcCceEEeccccEEcccC------------CceEEccccCccCCCcccccCHHHHHHHH
Confidence 665 67775 9999997 89999998763221 23444321 224799999999999
Q ss_pred HcCC-CCCCCChHHHHHHHHhC
Q 030697 144 CRGL-SIKYLTEDKVIDYIRES 164 (173)
Q Consensus 144 ~~g~-~~~~lvp~~V~~yI~~~ 164 (173)
++|+ .+..++|++|.+||++.
T Consensus 327 ~~G~~pp~~f~~peV~~~I~~~ 348 (349)
T 1v47_A 327 REGKAPPSELVRPELLPILRRG 348 (349)
T ss_dssp HTTCCCCTTTSCGGGHHHHHTT
T ss_pred HCcCCCchhcCCHHHHHHHHhh
Confidence 9998 45799999999999873
No 17
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=99.71 E-value=1.6e-17 Score=139.06 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=104.3
Q ss_pred CCCCCCHHHHHHHHHHHhcC-CCc----eeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhh--h
Q 030697 2 IQGLISAEHRINLCNLACKS-SDF----IMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL--E 74 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~-~~~----~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l--~ 74 (173)
|...+++++|++|+++++++ +|. +.+..+|.+..|++||+ +..+..+++++ . +||+|.|.+ .
T Consensus 234 K~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~~m~~aGPreai--lhaiirkn~G~--------t-~fIVGrDhag~~ 302 (396)
T 1jhd_A 234 KKGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFDMLYAGPREAV--LHAYFRQNMGA--------T-HFIIGRDHAGVG 302 (396)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECCCCCCTHHHHH--HHHHHHHHTTC--------S-EEEECTTTTCCT
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCcceEEEechHHhhcCCchHHH--HHHHHHHcCCC--------c-EEEECCCCCCcc
Confidence 66779999999999999998 476 78889999999999988 44443444443 5 999999997 6
Q ss_pred hCCCCCCCCcchHHHHhhc--------ccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcC------CCCCcccHHHHH
Q 030697 75 SFAIPGFWMPEQVWTICRN--------FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE------LVPNQISSTRIR 140 (173)
Q Consensus 75 ~l~~w~~W~~~~~~~l~~~--------~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~------~~~~~ISST~IR 140 (173)
+|. .|+++ ++|++. +.+++++|.++.... ..+..++. .....||||+||
T Consensus 303 ~~y---~~~~a--q~il~~~~~~~~l~i~iv~~~~~~Y~~~~------------~~~~~~~~~p~~~~~~~~~ISgT~IR 365 (396)
T 1jhd_A 303 DYY---GAFDA--QTIFDDEVPEGAMEIEIFRADHTAYSKKL------------NKIVMMRDVPDHTKEDFVLLSGTKVR 365 (396)
T ss_dssp TCS---CTTHH--HHHHHHTSCTTSCSCEEEECCCEEEETTT------------TEEEEGGGCTTCCGGGEECCCHHHHH
T ss_pred ccC---CcchH--HHHHHhcccccccceeEEecccceecCCC------------CeEEEccccCcccCCCccccCHHHHH
Confidence 676 67775 899986 688999998764221 23434321 224689999999
Q ss_pred HHHHcCC-CCCCCChHHHHHHHHhC
Q 030697 141 DCICRGL-SIKYLTEDKVIDYIRES 164 (173)
Q Consensus 141 ~~l~~g~-~~~~lvp~~V~~yI~~~ 164 (173)
+++++|+ .+..++|++|.+||+++
T Consensus 366 ~~L~~G~~pP~~f~~peV~~~I~~~ 390 (396)
T 1jhd_A 366 EMLGQGIAPPPEFSRPEVAKILMDY 390 (396)
T ss_dssp HHHHTTCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHCCCCCCcccCCHHHHHHHHHh
Confidence 9999997 55789999999999874
No 18
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.67 E-value=7.4e-18 Score=127.33 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=84.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
+.+++.++|++|++.|+.+.+ + +. +.++|+|.|.+.... .|
T Consensus 47 ~~~~~~~~R~~~~~~a~~~~~-~--------------------------~~---------~~v~v~~~d~~~~~~---~w 87 (181)
T 1ej2_A 47 RDPFTAGERVMMLTKALSENG-I--------------------------PA---------SRYYIIPVQDIECNA---LW 87 (181)
T ss_dssp SSCSCHHHHHHHHHHHHHHTT-C--------------------------CG---------GGEEEEECCCCSCHH---HH
T ss_pred CCCCCHHHHHHHHHHHHhhCC-C--------------------------CC---------CcEEEEecCccCCHH---HH
Confidence 346677888888888777665 2 01 258999999887776 45
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCc---ccHHHHHHHHHcCCCCCCCChHHHHH
Q 030697 83 MPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQ---ISSTRIRDCICRGLSIKYLTEDKVID 159 (173)
Q Consensus 83 ~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~---ISST~IR~~l~~g~~~~~lvp~~V~~ 159 (173)
.+. ++++...++++|++|++. .. .+.. .++.++. .+..+ ||||.||+.++.|++++++||++|.+
T Consensus 88 ~~~-~~~l~~~~~~~v~gr~~~--~~------~~~~--~~i~~~~-~~~~~~~~ISST~IR~~l~~G~~i~~lvP~~V~~ 155 (181)
T 1ej2_A 88 VGH-IKMLTPPFDRVYSGNPLV--QR------LFSE--DGYEVTA-PPLFYRDRYSGTEVRRRMLDDGDWRSLLPESVVE 155 (181)
T ss_dssp HHH-HHHHSCCCSEEECCCHHH--HH------HHHH--TTCCEEC-CCCSSTTTSSHHHHHHHHHHTCCCGGGSCHHHHH
T ss_pred HHH-HHHHCCCCCEEEECCHHH--HH------HHHh--CCeEEEe-cCCCccCcCcHHHHHHHHHcCCChhHhCCHHHHH
Confidence 442 467788899999998752 11 1111 2344443 34345 99999999999999999999999999
Q ss_pred HHHhCCCCC
Q 030697 160 YIRESRLYL 168 (173)
Q Consensus 160 yI~~~~LY~ 168 (173)
||++|+||.
T Consensus 156 yI~~~~l~~ 164 (181)
T 1ej2_A 156 VIDEINGVE 164 (181)
T ss_dssp HHHHTTHHH
T ss_pred HHHHcCChH
Confidence 999999984
No 19
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.62 E-value=6e-16 Score=117.56 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=84.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+++++.++|++|++.++++.+++.|++|+ .+|+++++.+ .+ -++|+|.|++.+|.
T Consensus 62 K~~l~s~eeR~~ml~~~~~~v~~v~v~~f~------~~~~d~l~~l---~~-----------~~iv~G~r~~~Df~---- 117 (187)
T 3k9w_A 62 KKPFFSLEERLKIANEVLGHYPNVKVMGFT------GLLKDFVRAN---DA-----------RVIVRGLRAVSDFE---- 117 (187)
T ss_dssp GCCSSCHHHHHHHHHHHHTTCTTEEEEEES------SCHHHHHHHT---TC-----------SEEEEECCTTSCHH----
T ss_pred cCCCCCHHHHHHHHHHHhccCCcEEEEech------hhHHHHHHHc---CC-----------CEEEECCCcccccc----
Confidence 667899999999999999999999999886 4788876543 22 28999999887765
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYI 161 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI 161 (173)
+ + ..+.. ++|. +....+.+++........||||.||+.++.|++++++||+.|.+||
T Consensus 118 ~-E---~~la~------~nr~-------------l~~~ietv~l~~~~~~~~ISST~IRe~~~~g~~i~~lVP~~V~~~i 174 (187)
T 3k9w_A 118 Y-E---FQMAG------MNRY-------------LLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVEKWL 174 (187)
T ss_dssp H-H---HHHHH------HHHH-------------HCTTCEEEEECCCGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHH
T ss_pred h-H---HHHHH------HHHH-------------hCCCCcEEEEecccccccccHHHHHHHHHcCCChhHHCCHHHHHHH
Confidence 3 1 12211 1221 1111134555432224799999999999999999999999999999
Q ss_pred HhC
Q 030697 162 RES 164 (173)
Q Consensus 162 ~~~ 164 (173)
+++
T Consensus 175 ~~k 177 (187)
T 3k9w_A 175 TEK 177 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 20
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.61 E-value=2.1e-16 Score=117.52 Aligned_cols=115 Identities=15% Similarity=0.184 Sum_probs=80.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+++++.++|++|+++++++ +++.|+++| + +|+++++.+ .+ -+||+|.|++.+|.
T Consensus 45 K~~~~~~~~R~~m~~~~~~~-~~v~V~~~~----~--l~~~~~~~~---~~-----------~~~v~G~r~~~Df~---- 99 (162)
T 4f3r_A 45 KDPHLKLEERVNLIADVLTD-ERVEVLPLT----G--LLVDFAKTH---QA-----------NFILRGLRAVSDFD---- 99 (162)
T ss_dssp ----CCHHHHHHHHHHHCCC-TTEEEEECC----S--CHHHHHHHT---TC-----------CEEEEEECSHHHHH----
T ss_pred cCCCCCHHHHHHHHHHhhCC-CCEEEEecc----c--hHHHHHHHc---CC-----------CEEEECCCchhhhh----
Confidence 66789999999999999998 999999987 2 677766433 22 28999999999976
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYI 161 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI 161 (173)
+ + ..+.. ++|. +....+.++++.......||||.||+.++.|++++++||+.|.+||
T Consensus 100 ~-e---~~~a~------~nr~-------------l~~~ietv~l~~~~~~~~ISST~IRe~~~~g~~i~~~VP~~V~~~l 156 (162)
T 4f3r_A 100 Y-E---FQLAH------MNYQ-------------LSPEIETIFLPAREGYSYVSGTMVREIVTLGGDVSPFVPPLVARHL 156 (162)
T ss_dssp H-H---HHHHH------HHHH-------------HCTTCEEEEEECCGGGSSCCHHHHHHHHHTTCCCTTTSCHHHHHHC
T ss_pred h-H---HHHHH------HHHH-------------hCCCccEEEEECCcccccccHHHHHHHHHcCCChhHhCCHHHHHHH
Confidence 2 1 22222 1221 1111245666643334699999999999999999999999999999
Q ss_pred HhC
Q 030697 162 RES 164 (173)
Q Consensus 162 ~~~ 164 (173)
+++
T Consensus 157 ~~~ 159 (162)
T 4f3r_A 157 QKR 159 (162)
T ss_dssp ---
T ss_pred HHH
Confidence 875
No 21
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.59 E-value=5.3e-16 Score=115.78 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=74.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCC-ceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSD-FIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~-~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
+..++.++|++|+++|++++| ++. +.+.|.+.... .
T Consensus 44 ~~~~~~~~R~~m~~~~~~~~~~~v~----------------------------------------v~~~d~l~~~~---~ 80 (168)
T 1f9a_A 44 ENPFTAGERILMITQSLKDYDLTYY----------------------------------------PIPIKDIEFNS---I 80 (168)
T ss_dssp SCCSCHHHHHHHHHHHHTTSSCEEE----------------------------------------EEECCCCSCGG---G
T ss_pred CCCCCHHHHHHHHHHHHhcCCCceE----------------------------------------EEeeCCcccHH---H
Confidence 346688888888888888776 332 22333333333 3
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCc---ccHHHHHHHHHcCCCCCCCChHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQ---ISSTRIRDCICRGLSIKYLTEDKVI 158 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~---ISST~IR~~l~~g~~~~~lvp~~V~ 158 (173)
|.++ ++++...+++++++|++. .. .+.. .++.++. .+..+ ||||+||+.++.|++++++||++|.
T Consensus 81 w~~~-~~~~~~~~~~~~~~~~~~--~~------~~~~--~~i~~~~-~~~~~~~~ISST~IR~~~~~g~~i~~lvP~~V~ 148 (168)
T 1f9a_A 81 WVSY-VESLTPPFDIVYSGNPLV--RV------LFEE--RGYEVKR-PEMFNRKEYSGTEIRRRMLNGEKWEHLVPKAVV 148 (168)
T ss_dssp HHHH-HHHHSCCCSEEECCCHHH--HH------HHHH--TTCEEEC-CCCCSTTTSSHHHHHHHHHHTCCCGGGSCHHHH
T ss_pred HHHH-HHHhccCCCEEEECcHHH--HH------hhhh--cCcEEEe-CCccccCcccHHHHHHHHHcCCChhHcCCHHHH
Confidence 5432 356666777777776531 11 1111 3466664 55555 9999999999999999999999999
Q ss_pred HHHHhCCCCC
Q 030697 159 DYIRESRLYL 168 (173)
Q Consensus 159 ~yI~~~~LY~ 168 (173)
+||++|+||.
T Consensus 149 ~yI~~~~l~~ 158 (168)
T 1f9a_A 149 DVIKEIKGVE 158 (168)
T ss_dssp HHHHHHTHHH
T ss_pred HHHHHcCChH
Confidence 9999999863
No 22
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.46 E-value=2.5e-14 Score=116.70 Aligned_cols=116 Identities=14% Similarity=0.047 Sum_probs=82.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+..+++++|++|+++++++.+ .. +++|++|.|.+.++.+|+.
T Consensus 50 ~~~~~~~~~R~~m~~~~~~~~~-----------------------------~~--------~~~~i~~~d~~~~~~~w~~ 92 (341)
T 2qjo_A 50 TRNPWRSPERMAMIEACLSPQI-----------------------------LK--------RVHFLTVRDWLYSDNLWLA 92 (341)
T ss_dssp SSSCSCHHHHHHHHHTTSCHHH-----------------------------HT--------TEEEEEEECCTTCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhhcc-----------------------------CC--------eEEEEECCCCcCChHHHHH
Confidence 4456888999999998776543 11 5899999999888885444
Q ss_pred CCcchHHHHhhc-----ccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCC-CCcccHHHHHHHHHcCCCCCC--CC
Q 030697 82 WMPEQVWTICRN-----FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELV-PNQISSTRIRDCICRGLSIKY--LT 153 (173)
Q Consensus 82 W~~~~~~~l~~~-----~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~-~~~ISST~IR~~l~~g~~~~~--lv 153 (173)
| .+++++. ++++++.++...... ..+...++.++. .+ ..+||||.||+.++.|+++.+ +|
T Consensus 93 ~----~~~l~~~l~r~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~-~~~~~~iSST~IR~~l~~g~~~~~~~lv 160 (341)
T 2qjo_A 93 A----VQQQVLKITGGSNSVVVLGHRKDASSY-------YLNLFPQWDYLE-TGHYPDFSSTAIRGAYFEGKEGDYLDKV 160 (341)
T ss_dssp H----HHHHHHHHHTTCSCEEEEECCCSGGGG-------GGGSCTTSEEEE-CCCCTTCCHHHHHHHHHHTCGGGTTTTS
T ss_pred H----HHHHhHHhcCCCceEEEEcCCCCCChH-------HHHhccccceee-cccCCCCCcHHHHHHHHcCCCcchhhhC
Confidence 4 3456665 678888655321111 111112455553 33 579999999999999998777 99
Q ss_pred hHHHHHHHHhCCC
Q 030697 154 EDKVIDYIRESRL 166 (173)
Q Consensus 154 p~~V~~yI~~~~L 166 (173)
|++|.+||.++++
T Consensus 161 p~~v~~~i~~~~~ 173 (341)
T 2qjo_A 161 PPAIADYLQTFQK 173 (341)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcc
Confidence 9999999998765
No 23
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.40 E-value=2.9e-14 Score=105.45 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=81.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+++++.++|++|++.|+++.+++.|+.++ + .+++ .+++..|+ +++.|.++..+|.
T Consensus 42 K~~~~~~~eR~~ml~~a~~~~~~v~v~~~~----~--l~~~---~~~~~~~~-----------~ivrG~r~~~D~~---- 97 (157)
T 3nv7_A 42 KNPMFSLDERLKMIQLATKSFKNVECVAFE----G--LLAY---LAKEYHCK-----------VLVRGLRVVSDFE---- 97 (157)
T ss_dssp GCCSSCHHHHHHHHHHHHTTSTTEEEEEEC----S--CHHH---HHHHTTCC-----------CBCCCCSCCCCHH----
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEEecC----c--hHHH---HHHHcCCC-----------EEEECCcccchhh----
Confidence 677899999999999999999999998876 2 3444 44554443 8999999877754
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHHHHHH
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYI 161 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI 161 (173)
| + .++.. ++|. |...-+.+++........||||.||+.+..|.+++++||+.|.++|
T Consensus 98 y-e---~~~a~------~n~~-------------l~~~ietv~l~~~~~~~~iSSt~vRe~~~~ggdv~~~VP~~V~~~l 154 (157)
T 3nv7_A 98 Y-E---LQMGY------ANKS-------------LNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPLI 154 (157)
T ss_dssp H-H---HHHHH------HHHH-------------SSCCCCCCCCCCCHHHHTCCHHHHHHHHHTTCCCTTTSCTTTHHHH
T ss_pred h-h---HHHHH------HHHH-------------hCCCceEEEEcCCcccceeeHHHHHHHHHcCCChHHhCCHHHHHHH
Confidence 3 2 12221 2221 1111134444431223589999999999999999999999999998
Q ss_pred Hh
Q 030697 162 RE 163 (173)
Q Consensus 162 ~~ 163 (173)
++
T Consensus 155 ~~ 156 (157)
T 3nv7_A 155 SK 156 (157)
T ss_dssp CC
T ss_pred hh
Confidence 64
No 24
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.09 E-value=1.2e-10 Score=95.32 Aligned_cols=118 Identities=8% Similarity=0.049 Sum_probs=78.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
|+..+++++|++|+++|+++.+ +|+. ++++++|.|.+.... .
T Consensus 50 ~~~~~~~~~R~~m~~~~~~~~~---------------------------~~~~--------~~~~~~~~d~~~~~~---~ 91 (352)
T 2qjt_B 50 IKNPFSFEQRKQMIESDLQVAG---------------------------IDLD--------TVVIEPLADYFYQEQ---K 91 (352)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTT---------------------------CCGG--------GEEEEEEECCTTCHH---H
T ss_pred cCCCCCHHHHHHHHHHHhcccc---------------------------Cccc--------eEEEEEcCCCcCChH---H
Confidence 4567899999999999997653 2443 688999999887777 4
Q ss_pred CCcchHHHHhhc----ccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHc-C--CC-CCCCC
Q 030697 82 WMPEQVWTICRN----FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICR-G--LS-IKYLT 153 (173)
Q Consensus 82 W~~~~~~~l~~~----~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~-g--~~-~~~lv 153 (173)
|.+..-+.+.+. ..+++++|........ + .....+..++......||||.||+.+.. | .+ ++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~------~-~~~~~~~~~~~~~~~~iSST~IR~~~~~~g~~~~~i~~lv 164 (352)
T 2qjt_B 92 WQDELRKNVYKHAKNNNSIAIVGHIKDSSSYY------I-RSFPEWDYIGVDNYKNFNATEFRQKFYNGIISKQYMCSND 164 (352)
T ss_dssp HHHHHHHHHTTTSCSSCCEEECCBSSSSHHHH------H-HHCTTSEECCBCCTTCCCHHHHHHHHHTTCCCGGGCSCSS
T ss_pred HHHHHHHHHHHhcccCCeEEEEcCCCCcchhh------h-hcCCccceeccCCCCCCCchHHHHHHhccCcccchhhhcC
Confidence 544211233332 4667777654321111 1 1112244443223457999999999997 8 77 99999
Q ss_pred hH-HHHHHHHhC
Q 030697 154 ED-KVIDYIRES 164 (173)
Q Consensus 154 p~-~V~~yI~~~ 164 (173)
|+ +|.+||.+.
T Consensus 165 P~~~va~~I~~w 176 (352)
T 2qjt_B 165 PKLGTYNFLTKF 176 (352)
T ss_dssp TTSHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 99 999999864
No 25
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=98.74 E-value=2e-08 Score=71.35 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 82 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W 82 (173)
..+++.++|++|++ ++.+.+.+.+ +.+|+ ++++.+++..|+ ++++|.|... .+
T Consensus 47 ~~l~~~~eR~~~l~-~~~~~d~v~~--------~~~~~-~~~~~~~~~~~~-----------~iv~G~D~~~------~~ 99 (132)
T 2b7l_A 47 KSYYDYEQRKMMLE-SIRYVDLVIP--------EKGWG-QKEDDVEKFDVD-----------VFVMGHDWEG------EF 99 (132)
T ss_dssp CCSSCHHHHHHHHH-TBTTCCEEEE--------ECCGG-GHHHHHHHTTCC-----------EEEECGGGTT------TT
T ss_pred CCCCCHHHHHHHHH-hcCCCCEEEE--------CCChH-HHHHHHHHcCCC-----------EEEECCCCcC------cH
Confidence 45789999999999 7876777665 34566 777777766553 5889999721 23
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCC
Q 030697 83 MPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 147 (173)
Q Consensus 83 ~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~ 147 (173)
+.|.+.+. +.+++ ....||||.||+.+++|.
T Consensus 100 -----~~L~~~~~---------------------------v~~i~--~~~~iSST~IR~~i~~g~ 130 (132)
T 2b7l_A 100 -----DFLKDKCE---------------------------VIYLK--RTEGISTTKIKQELYGKD 130 (132)
T ss_dssp -----GGGTTTSE---------------------------EEECS--SCC---------------
T ss_pred -----HHHHhCCE---------------------------EEEEC--CCCCcCHHHHHHHHHhcC
Confidence 22222222 33332 234799999999999885
No 26
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=98.57 E-value=1.4e-07 Score=66.64 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhh
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 72 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~ 72 (173)
+.+++.++|++|++ ++.+.+.+.+ +.+|+ ++++.+++..+ + ++++|.|.
T Consensus 47 ~~l~~~~eR~~~l~-~~~~~d~v~~--------~~~~~-~~~~~l~~~~~----------~-~iv~G~D~ 95 (129)
T 1coz_A 47 KAYHSYEHRKLILE-TIRYVDEVIP--------EKNWE-QKKQDIIDHNI----------D-VFVMGDDW 95 (129)
T ss_dssp CCSSCHHHHHHHHT-TBTTCCEEEE--------ECCST-THHHHHHHTTC----------S-EEEEEGGG
T ss_pred CCCCCHHHHHHHHH-hcCCCCEEEe--------CCCHH-HHHHHHHHhCC----------c-EEEECCCC
Confidence 56789999999999 7776776653 23455 66666665433 3 78999994
No 27
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=98.30 E-value=2.8e-06 Score=70.85 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=92.9
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCc----eeechhhhcCCCccchHHHHHH-HHHHhhhcccccCCCceEEEEeehhhhh--
Q 030697 2 IQGLISAEHRINLCNLACKSSDF----IMVDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLE-- 74 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~----~~v~~~E~~~~~~syTi~tl~~-l~~~~p~~~~~~~~~~~~~fliG~D~l~-- 74 (173)
|..-.+.+-|++..+.+++.+|. +.+-.....-.||...+ +.. +++.|+-. .||+|-|..-
T Consensus 228 K~~Dip~~vR~~~~~~~l~~yp~~~v~l~~~p~~mryAGPrEai--~HAiiRkN~Gct----------hfIVGRDhAG~g 295 (395)
T 1r6x_A 228 KPGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDREAV--WHAIIRKNYGAS----------HFIVGRDHAGPG 295 (395)
T ss_dssp CTTCCCHHHHHHHHHHHGGGSSTTCEEECCBCCBCCCCHHHHHH--HHHHHHHHTTCS----------EEEECTTTTCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCccEEEEecchhhhhcCcHHHH--HHHHHHHHcCCc----------eEEECCCCCCCC
Confidence 66778999999999999998775 44445555567776544 444 56667642 8999999875
Q ss_pred ------hCCCCCCCCcchHHHHhhcc------cEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCC-----CCCcccHH
Q 030697 75 ------SFAIPGFWMPEQVWTICRNF------GVICIRREGQDVEKIISDNEILDKNKGNIKLVDEL-----VPNQISST 137 (173)
Q Consensus 75 ------~l~~w~~W~~~~~~~l~~~~------~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~-----~~~~ISST 137 (173)
+|= .|+++ ++|++.+ .++.+...-|.... +.+...+.. ....||+|
T Consensus 296 ~~~~~~d~Y---~~~~a--q~i~~~~~~el~I~~v~f~~~~Y~~~~------------~~~~~~~~~p~~~~~~~~iSGT 358 (395)
T 1r6x_A 296 KNSKGVDFY---GPYDA--QELVESYKHELDIEVVPFRMVTYLPDE------------DRYAPIDQIDTTKTRTLNISGT 358 (395)
T ss_dssp BCTTSCBSS---CTTHH--HHHHHHHHHHHTCEEEECCCEEEEGGG------------TEEEETTTSCSSSCCCBCCCHH
T ss_pred CCCcccccC---CcchH--HHHHHhchhccCceEEEecceEEeccc------------CeEEEcccCCCCccceEccCHH
Confidence 443 45554 8888776 55555554332211 233333211 24689999
Q ss_pred HHHHHHHcCCCC-CCCChHHHHHHHHhCCCCC
Q 030697 138 RIRDCICRGLSI-KYLTEDKVIDYIRESRLYL 168 (173)
Q Consensus 138 ~IR~~l~~g~~~-~~lvp~~V~~yI~~~~LY~ 168 (173)
+||++|+.|+.+ ..+++++|.+.+.+ +|.
T Consensus 359 ~~R~~L~~G~~pP~~f~rpeV~~iL~~--~~~ 388 (395)
T 1r6x_A 359 ELRRRLRVGGEIPEWFSYPEVVKILRE--SNP 388 (395)
T ss_dssp HHHHHHHHTCCCCTTTSCHHHHHHHTT--C--
T ss_pred HHHHHHHCcCCCCcccCCHHHHHHHHH--hcC
Confidence 999999999877 77999999998876 554
No 28
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.12 E-value=9.5e-06 Score=69.94 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=92.9
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCc----eeechhhhcCCCccchHHHHHH-HHHHhhhcccccCCCceEEEEeehhhhh--
Q 030697 2 IQGLISAEHRINLCNLACKSSDF----IMVDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLE-- 74 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~----~~v~~~E~~~~~~syTi~tl~~-l~~~~p~~~~~~~~~~~~~fliG~D~l~-- 74 (173)
|..-.+.+-|++..+.+++.+|. +.+..+...-.||...+ +.. +++.|+-. .||+|-|..-
T Consensus 229 k~~di~~~~r~~~~~~~~~~yp~~~~~l~~~p~~m~yaGprea~--~hai~r~n~G~t----------h~IvGrdhAg~g 296 (511)
T 1g8f_A 229 KPGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDREAV--WHAIIRKNYGAS----------HFIVGRDHAGPG 296 (511)
T ss_dssp STTCCCHHHHHHHHHHHGGGSCTTSEEECCBCCBCCCCHHHHHH--HHHHHHHHTTCS----------EEECCTTTTCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCcccEEEEecchhhhccCcHHHH--HHHHHHHhCCCc----------eEEeCCCCCCCC
Confidence 66778999999999999998875 34455666667777554 444 56777642 8999999875
Q ss_pred ------hCCCCCCCCcchHHHHhhcc------cEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCC-----CCcccHH
Q 030697 75 ------SFAIPGFWMPEQVWTICRNF------GVICIRREGQDVEKIISDNEILDKNKGNIKLVDELV-----PNQISST 137 (173)
Q Consensus 75 ------~l~~w~~W~~~~~~~l~~~~------~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~-----~~~ISST 137 (173)
+|- .|+++ ++|++.+ ..+.+..-.+.. ..+.+..++..+ ...||+|
T Consensus 297 ~~~~~~~~Y---~~~~a--q~i~~~~~~~l~i~pv~fd~~~y~~------------~~g~~i~~d~~p~~~~~~~~iSgt 359 (511)
T 1g8f_A 297 KNSKGVDFY---GPYDA--QELVESYKHELDIEVVPFRMVTYLP------------DEDRYAPIDQIDTTKTRTLNISGT 359 (511)
T ss_dssp BCTTSCBSS---CTTHH--HHHHHHTHHHHCSEEECCCCEEEEG------------GGTEEEEGGGCSSSCCCCBCCCHH
T ss_pred CCCcccccC---CcchH--HHHHHhCccccCceEEeecceeEec------------ccCeEEEcccCCCCcccccccCHH
Confidence 433 45554 8888765 444444332211 113455554233 3699999
Q ss_pred HHHHHHHcCCCC-CCCChHHHHHHHHh
Q 030697 138 RIRDCICRGLSI-KYLTEDKVIDYIRE 163 (173)
Q Consensus 138 ~IR~~l~~g~~~-~~lvp~~V~~yI~~ 163 (173)
+||++++.|..+ ..+++++|.+.+++
T Consensus 360 ~IR~~Lr~G~~~P~~f~rpeV~~vLr~ 386 (511)
T 1g8f_A 360 ELRRRLRVGGEIPEWFSYPEVVKILRE 386 (511)
T ss_dssp HHHHHHHHTCCCCTTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCccccChhhHHHHHH
Confidence 999999999887 68999999999887
No 29
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.94 E-value=2.6e-06 Score=70.10 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCc-eeechhhhcCCCcc
Q 030697 3 QGLISAEHRINLCNLACKSSDF-IMVDPWEANQSGYQ 38 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~-~~v~~~E~~~~~~s 38 (173)
+..+++++|++|+++|+++.|+ ++|+.++.. ..++
T Consensus 53 ~~~~~~~~R~~m~~~~~~~~~~~~~v~~~~~~-~~~~ 88 (365)
T 1lw7_A 53 KRMPTVQDRLRWMQQIFKYQKNQIFIHHLVED-GIPS 88 (365)
T ss_dssp SSCCCHHHHHHHHHHHTSTTTTTEEEEEEECS-SSCC
T ss_pred CCCCCHHHHHHHHHHHhhcCCCcEEEEEeccC-CCCC
Confidence 3469999999999999999999 999998854 3444
No 30
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=96.66 E-value=0.0022 Score=52.37 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHH-HHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~-l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
+.+++.++|++|++.+ +.+.+.+.+|.......+.. +.++. |.+.+. --++++|.|....-. +
T Consensus 69 ~~L~~~~eR~~ll~~~--gVD~v~v~~F~~~~a~ls~e-~Fi~~il~~~l~----------~~~ivvG~Df~FG~~---r 132 (338)
T 2x0k_A 69 LGITTLAERFALAESF--GIDGVLVIDFTRELSGTSPE-KYVEFLLEDTLH----------ASHVVVGANFTFGEN---A 132 (338)
T ss_dssp CBSSCHHHHHHHHHHT--TCSEEEEECTTTSSSSCCHH-HHHHHCCCCCTC----------EEEEEEETTCEESGG---G
T ss_pred CCCCCHHHHHHHHHhc--CCCEEEEccccHHHHhCCHH-HHHHHHHHhhcC----------CCEEEEeecCCCCCC---C
Confidence 3478999999999873 46667666665433332221 23332 222222 138999998876655 4
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcC--CCCCcccHHHHHHHHHcCC
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE--LVPNQISSTRIRDCICRGL 147 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~--~~~~~ISST~IR~~l~~g~ 147 (173)
|.+. +.|-+.+. + |. .+..++. .....||||.||+.|++|.
T Consensus 133 ~g~~--~~L~~~~~-----~-g~-----------------~V~~v~~~~~~~~~ISST~IR~~L~~G~ 175 (338)
T 2x0k_A 133 AGTA--DSLRQICQ-----S-RL-----------------TVDVIDLLDDEGVRISSTTVREFLSEGD 175 (338)
T ss_dssp CEEH--HHHHHHTT-----T-TS-----------------EEEEECCCEETTEECSHHHHHHHHHTTC
T ss_pred CCCH--HHHHHHhc-----C-Ce-----------------EEEEECcEecCCcccccchHHHHHhcCc
Confidence 5442 33333221 1 11 1122210 1134899999999999984
No 31
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=96.26 E-value=0.027 Score=45.40 Aligned_cols=16 Identities=56% Similarity=0.696 Sum_probs=14.5
Q ss_pred CcccHHHHHHHHHcCC
Q 030697 132 NQISSTRIRDCICRGL 147 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~ 147 (173)
..||||.||+.|++|.
T Consensus 163 ~~ISST~IR~~L~~G~ 178 (308)
T 3op1_A 163 GKISSTRIRQAILDGN 178 (308)
T ss_dssp CBCCHHHHHHHHHHTC
T ss_pred ceEeHHHHHHHHHcCC
Confidence 4899999999999985
No 32
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=96.12 E-value=0.0064 Score=43.31 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeec
Q 030697 2 IQGLISAEHRINLCNLACKSSDFIMVD 28 (173)
Q Consensus 2 k~~~~~~~~Rl~M~~la~~~~~~~~v~ 28 (173)
++.+++.++|++|++. +...+.+.+.
T Consensus 47 ~~~l~~~~eR~~~l~~-~~~vd~v~~~ 72 (143)
T 3glv_A 47 KIPIFDENSRLALISE-LKVVDRAILG 72 (143)
T ss_dssp CCCSSCHHHHHHHHTT-BTTCSEEEEC
T ss_pred CCCCCCHHHHHHHHHh-cCCCCEEEEc
Confidence 3457899999999986 4434555543
No 33
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=95.49 E-value=0.014 Score=46.70 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechh-hhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCC
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPW-EANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 81 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~-E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~ 81 (173)
..+++.++|++|++.+ . .+.+..| ++....+. +.++.+. +.- -++++|.|.-..-. +
T Consensus 51 ~~l~~~~eR~~ll~~l-g---~~~v~~F~~~a~ls~~---~Fi~~il--l~~----------~~iVvG~Df~fG~~---~ 108 (293)
T 1mrz_A 51 GLLMTVESRVEMLSRY-A---RTVVLDFFRIKDLTPE---GFVERYL--SGV----------SAVVVGRDFRFGKN---A 108 (293)
T ss_dssp CBSSCHHHHHHHHTTT-S---CEEEECHHHHTTCCHH---HHHHHHC--TTC----------CEEEEETTCCBSGG---G
T ss_pred CCCCCHHHHHHHHHhC-C---CEEEEEhHHhhcCCHH---HHHHHHh--cCC----------CEEEECCCCCCCCC---C
Confidence 3478999999999853 2 4445455 22222222 2333322 221 17999999765544 3
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcC--CCCCcccHHHHHHHHHcCC
Q 030697 82 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE--LVPNQISSTRIRDCICRGL 147 (173)
Q Consensus 82 W~~~~~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~--~~~~~ISST~IR~~l~~g~ 147 (173)
|.+. +.|-+ +. ..+..++. .....||||.||+.|++|.
T Consensus 109 ~g~~--~~L~~-~G-------------------------~~V~~v~~~~~~~~~iSST~IR~~L~~G~ 148 (293)
T 1mrz_A 109 SGNA--SFLRK-KG-------------------------VEVYEIEDVVVQGKRVSSSLIRNLVQEGR 148 (293)
T ss_dssp CBCH--HHHHH-TT-------------------------CEEEEECCCEETTEECCHHHHHHHHHTTC
T ss_pred CCCH--HHHHh-CC-------------------------CEEEEECCEEeCCccccHhHHHHHHhcCc
Confidence 4342 33322 21 12222210 1124899999999999984
No 34
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=95.14 E-value=0.013 Score=48.21 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHcCC--CCCCCChHHHHHHHHh
Q 030697 133 QISSTRIRDCICRGL--SIKYLTEDKVIDYIRE 163 (173)
Q Consensus 133 ~ISST~IR~~l~~g~--~~~~lvp~~V~~yI~~ 163 (173)
.+|+|.||+.+.+|. .++.+||+++.+|+++
T Consensus 226 ~~SAS~IR~~i~~g~~~~~~~lVP~~t~~~l~~ 258 (357)
T 3gmi_A 226 GISGTKIREAIFSGKFEDIKNMLPKTTLSILKE 258 (357)
T ss_dssp CCCHHHHHHHHHTTCGGGTGGGSCHHHHHHHHH
T ss_pred cccHHHHHHHHHcCChhHHHhcCChHHHHHHHH
Confidence 799999999999995 8999999999999985
No 35
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=94.24 E-value=0.16 Score=39.30 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceee
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMV 27 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v 27 (173)
+++++.++|++|++ ++...+.+.+
T Consensus 124 ~pi~s~eER~e~v~-~~k~VD~Vvv 147 (236)
T 3hl4_A 124 FTVMNENERYDAVQ-HCRYVDEVVR 147 (236)
T ss_dssp CCSSCHHHHHHHHH-TBTTCSEEES
T ss_pred CCCCCHHHHHHHHH-HhCCCCeEEE
Confidence 46889999999999 4665555554
No 36
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=91.44 E-value=0.19 Score=35.92 Aligned_cols=29 Identities=3% Similarity=-0.156 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHh-cCC-Cceeechhh
Q 030697 3 QGLISAEHRINLCNLAC-KSS-DFIMVDPWE 31 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~-~~~-~~~~v~~~E 31 (173)
+..+++++|++|+++|+ +++ +++.+..++
T Consensus 46 ~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~ 76 (148)
T 3do8_A 46 RSVLPFAIRAENVKRYVMRKYGFEPEIVKIT 76 (148)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHhcccCCcEEEEeec
Confidence 46789999999999999 764 466666655
No 37
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=86.75 E-value=2.4 Score=36.47 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=19.0
Q ss_pred CcccHHHHHHH-HHcCCCC-CCCChHHHHHHHHh
Q 030697 132 NQISSTRIRDC-ICRGLSI-KYLTEDKVIDYIRE 163 (173)
Q Consensus 132 ~~ISST~IR~~-l~~g~~~-~~lvp~~V~~yI~~ 163 (173)
..||+|+||+. +..|..+ ..+..++|.+-+++
T Consensus 330 ~~iSgt~iR~~~L~~g~~~p~~~~r~eV~~~lr~ 363 (546)
T 2gks_A 330 INISGTEIRENFLKQGRKLPEWFTRPEVAEILAE 363 (546)
T ss_dssp -------CTHHHHTTTCCCCTTTSCHHHHHHHHH
T ss_pred eecchhhhhhhhhcCCCCCCccccchhHHHHHHH
Confidence 57999999999 9999876 44555777776665
No 38
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=78.93 E-value=7.7 Score=33.44 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=23.9
Q ss_pred CcccHHHHHHHHHcCCCC-CCCChHHHHHHHHh
Q 030697 132 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 163 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~~~-~~lvp~~V~~yI~~ 163 (173)
..+|.|+||+.+..|..+ ..+..+.|.+-+++
T Consensus 328 ~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~ 360 (552)
T 3cr8_A 328 LTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHR 360 (552)
T ss_dssp ECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCccccccchhhhhhh
Confidence 589999999999999875 34443667766554
No 39
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=77.20 E-value=6.5 Score=31.84 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcee
Q 030697 3 QGLISAEHRINLCNLACKSSDFIM 26 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~ 26 (173)
+++.+.++|++|++. ++..+.+.
T Consensus 53 ~pi~s~eER~~~l~~-l~~VD~Vv 75 (341)
T 3elb_A 53 PPVFTQEERYKMVQA-IKWVDEVV 75 (341)
T ss_dssp CCSSCHHHHHHHHHH-BTTCCEEE
T ss_pred CCCCCHHHHHHHHHH-cCCCCEEE
Confidence 467899999999995 55555444
No 40
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=74.02 E-value=20 Score=30.89 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=23.6
Q ss_pred CcccHHHHHHHHHcCCCCC-CCChHHHHHHHHh
Q 030697 132 NQISSTRIRDCICRGLSIK-YLTEDKVIDYIRE 163 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~~~~-~lvp~~V~~yI~~ 163 (173)
..||.|+||+.+..|..+. ....+.|.+-.++
T Consensus 355 ~~iSgt~ir~~l~~g~~~p~w~~~~eVsr~lRe 387 (573)
T 1m8p_A 355 LNISGTELRRRLRSGAHIPEWFSYPEVVKILRE 387 (573)
T ss_dssp BCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHT
T ss_pred ecCChHHHHHHHhccCCCCcccccccccHHHHH
Confidence 5899999999999997663 4444567665554
No 41
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=54.59 E-value=7.6 Score=31.45 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehh
Q 030697 3 QGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSD 71 (173)
Q Consensus 3 ~~~~~~~~Rl~M~~la~~~~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D 71 (173)
+++.+.++|++|++ +++..+++.+.. ....|++.++.+ -++ +++.|.|
T Consensus 248 ~pi~~~~ER~~~v~-~~~~vd~V~v~~------~~~l~~~~~~~~---~~~-----------~iv~G~d 295 (341)
T 3elb_A 248 YPIMNLHERTLSVL-ACRYVSEVVIGA------PYAVTAELLSHF---KVD-----------LVCHGKT 295 (341)
T ss_dssp CCSSCHHHHHHHHH-TBTTCCEEEEEE------CSSCCHHHHHHT---TCS-----------EEEECSS
T ss_pred CCCCCHHHHHHHHH-HcCCCCCEEECC------CCcchHHHHHhc---CCc-----------EEEECCC
Confidence 47899999999999 677777776632 112445555333 333 8899976
No 42
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=52.70 E-value=13 Score=32.63 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=26.6
Q ss_pred CcccHHHHHHHHHcCCCC-CCCChHHHHHHHHh
Q 030697 132 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 163 (173)
Q Consensus 132 ~~ISST~IR~~l~~g~~~-~~lvp~~V~~yI~~ 163 (173)
..||.|.+|++++.|+.+ ..+.-++|.+.+.+
T Consensus 584 ~~isgt~~R~~l~~G~~pP~~f~rpev~~~l~~ 616 (630)
T 1x6v_B 584 EFISGTRMRKLAREGQKPPEGFMAPKAWTVLTE 616 (630)
T ss_dssp ECCCHHHHHHHHHTTCCCCTTSSCHHHHHHHHH
T ss_pred eecCHHHHHHHHHCCCCCCcccCcHHHHHHHHH
Confidence 489999999999999755 45777899888764
No 43
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=49.86 E-value=4.9 Score=26.17 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=16.5
Q ss_pred CCCChHHHHHHHHhCCCCCCC
Q 030697 150 KYLTEDKVIDYIRESRLYLNS 170 (173)
Q Consensus 150 ~~lvp~~V~~yI~~~~LY~~~ 170 (173)
+.-|-..+++||++|+|....
T Consensus 29 r~evvk~lW~YIK~n~Lqdp~ 49 (93)
T 1v31_A 29 RPRIIAAIWHYVKARKLQNPN 49 (93)
T ss_dssp SHHHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHHHHHHHHHHccCcCcc
Confidence 344677899999999998654
No 44
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=47.50 E-value=7.3 Score=25.87 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=16.1
Q ss_pred CCChHHHHHHHHhCCCCCCC
Q 030697 151 YLTEDKVIDYIRESRLYLNS 170 (173)
Q Consensus 151 ~lvp~~V~~yI~~~~LY~~~ 170 (173)
.-|-..+++||++|+|....
T Consensus 38 ~eVvk~lW~YIK~nnLQdp~ 57 (101)
T 1v32_A 38 YDVSDTIAKYISKEGLLDPS 57 (101)
T ss_dssp HHHHHHHHHHHHHHTCBCSS
T ss_pred HHHHHHHHHHHHhhcCcCcc
Confidence 34677899999999998654
No 45
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=43.93 E-value=4.8 Score=29.57 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHh--CCC
Q 030697 150 KYLTEDKVIDYIRE--SRL 166 (173)
Q Consensus 150 ~~lvp~~V~~yI~~--~~L 166 (173)
..-||++|++||++ |+.
T Consensus 100 k~~LP~dVI~Ymrd~~NgI 118 (192)
T 1xou_A 100 KAQLPDEVISYINDPRNDI 118 (192)
T ss_dssp -------------------
T ss_pred cccCCHHHHHHHHccCCCe
Confidence 45699999999999 875
No 46
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=38.43 E-value=16 Score=23.64 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=15.3
Q ss_pred CChHHHHHHHHhCCCCCCC
Q 030697 152 LTEDKVIDYIRESRLYLNS 170 (173)
Q Consensus 152 lvp~~V~~yI~~~~LY~~~ 170 (173)
-|-..+++||++|+|....
T Consensus 31 evvk~lW~YIK~n~Lqdp~ 49 (93)
T 1uhr_A 31 VIIQALWQYIKTHKLQDPH 49 (93)
T ss_dssp HHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHHHHHHHhccCCCcc
Confidence 3667899999999998643
No 47
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=29.52 E-value=46 Score=21.48 Aligned_cols=21 Identities=19% Similarity=0.548 Sum_probs=17.2
Q ss_pred HHHHHHHcCCCCCCCChHHHHHHHHh
Q 030697 138 RIRDCICRGLSIKYLTEDKVIDYIRE 163 (173)
Q Consensus 138 ~IR~~l~~g~~~~~lvp~~V~~yI~~ 163 (173)
.||+.|++|++ .++|.+|+.+
T Consensus 48 ~Vre~l~~G~S-----d~eI~~~mv~ 68 (90)
T 2kw0_A 48 KVYELMQEGKS-----KKEIVDYMVA 68 (90)
T ss_dssp HHHHHHHHTCC-----HHHHHHHHHH
T ss_pred HHHHHHHcCCC-----HHHHHHHHHH
Confidence 67888889875 7899999874
No 48
>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}
Probab=28.94 E-value=23 Score=25.45 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCC
Q 030697 39 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFA 77 (173)
Q Consensus 39 yTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~ 77 (173)
=|.+.|+.++++||+. +++++-+.|+..=|+
T Consensus 14 Gt~~~L~~i~~~~~~~--------~l~l~~~~~~~~l~~ 44 (172)
T 3tvz_A 14 GTADFLKTIVKKHPSE--------NILLMQGQENAILIH 44 (172)
T ss_dssp ECHHHHHHHHHHCTTS--------EEEEEEESSCEEEEE
T ss_pred CCHHHHHHHHHHCCCC--------ceEEEEcCCceEEEE
Confidence 3688999999999986 899999999876443
No 49
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=28.68 E-value=49 Score=21.02 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=17.2
Q ss_pred HHHHHHHcCCCCCCCChHHHHHHHHh
Q 030697 138 RIRDCICRGLSIKYLTEDKVIDYIRE 163 (173)
Q Consensus 138 ~IR~~l~~g~~~~~lvp~~V~~yI~~ 163 (173)
+||+.|+.|++ .++|.+|+.+
T Consensus 51 ~V~~~l~~G~s-----d~eI~~~~v~ 71 (84)
T 2hl7_A 51 QIYGQLQQGKS-----DGEIVDYMVA 71 (84)
T ss_dssp HHHHHHHHTCC-----HHHHHHHHHH
T ss_pred HHHHHHHcCCC-----HHHHHHHHHH
Confidence 67888889875 7899999875
No 50
>2jqt_A H-NS/STPA-binding protein 2; CNU, YDGT, replication origin associated, ORIC, protein binding; NMR {Escherichia coli}
Probab=26.18 E-value=31 Score=21.25 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=5.0
Q ss_pred HHHHHcCCCCCC--CChHHHHHHHH
Q 030697 140 RDCICRGLSIKY--LTEDKVIDYIR 162 (173)
Q Consensus 140 R~~l~~g~~~~~--lvp~~V~~yI~ 162 (173)
|..|..|.-+-. -||++|+.|++
T Consensus 47 rAEl~~~gkLyD~~kVP~~VW~yV~ 71 (71)
T 2jqt_A 47 RAELVSGGRLFDLGQVPKSVWHYVQ 71 (71)
T ss_dssp HHHHHTTCCCC--------------
T ss_pred HHHHhcCCcccccccCCHHHhhhcC
Confidence 344555433433 79999999974
No 51
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=25.52 E-value=56 Score=24.77 Aligned_cols=119 Identities=10% Similarity=0.088 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcC-CCceeechhhhcCCCccchHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhCCCCCCCCcch
Q 030697 8 AEHRINLCNLACKS-SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQ 86 (173)
Q Consensus 8 ~~~Rl~M~~la~~~-~~~~~v~~~E~~~~~~syTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l~~w~~W~~~~ 86 (173)
.++=.+|++.++++ .+.++|. ... .-..+.++.+++.+|+ .++|+.++.+.. +|.
T Consensus 45 ~~~a~~~a~al~~gGi~~iEvt-----~~t-~~a~e~I~~l~~~~~~------------~~iGaGTVlt~~---~a~--- 100 (232)
T 4e38_A 45 AEDIIPLGKVLAENGLPAAEIT-----FRS-DAAVEAIRLLRQAQPE------------MLIGAGTILNGE---QAL--- 100 (232)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEE-----TTS-TTHHHHHHHHHHHCTT------------CEEEEECCCSHH---HHH---
T ss_pred HHHHHHHHHHHHHCCCCEEEEe-----CCC-CCHHHHHHHHHHhCCC------------CEEeECCcCCHH---HHH---
Confidence 44556777777764 4545542 112 1346888999999874 367887776655 462
Q ss_pred HHHHhhcccEEEEcCCCCChhhhhhhHHHhhhcCCCeEEEcCCCCCcccHHHHHHHHHcCCCCCCCChHHH---HHHHHh
Q 030697 87 VWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDYIRE 163 (173)
Q Consensus 87 ~~~l~~~~~liv~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V---~~yI~~ 163 (173)
.-+..-++|+|.+ +.+.+-. ....+ .++.++. . -.+.|++.+++..|-++-.+.|.+. .+||++
T Consensus 101 -~Ai~AGA~fIvsP--~~~~~vi----~~~~~--~gi~~ip-G---v~TptEi~~A~~~Gad~vK~FPa~~~gG~~~lka 167 (232)
T 4e38_A 101 -AAKEAGATFVVSP--GFNPNTV----RACQE--IGIDIVP-G---VNNPSTVEAALEMGLTTLKFFPAEASGGISMVKS 167 (232)
T ss_dssp -HHHHHTCSEEECS--SCCHHHH----HHHHH--HTCEEEC-E---ECSHHHHHHHHHTTCCEEEECSTTTTTHHHHHHH
T ss_pred -HHHHcCCCEEEeC--CCCHHHH----HHHHH--cCCCEEc-C---CCCHHHHHHHHHcCCCEEEECcCccccCHHHHHH
Confidence 3445568999864 4443221 11111 2455553 2 2388999999999977656666433 366654
No 52
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=25.06 E-value=37 Score=23.11 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEEeehhhhh
Q 030697 41 LTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 74 (173)
Q Consensus 41 i~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~ 74 (173)
+.-|+..++.||+ .++=|+|.|+..
T Consensus 70 l~Ele~C~k~~p~---------~yVRliGfD~~~ 94 (118)
T 3zxw_B 70 LNEVQQCRSEYPN---------CFIRVVAFDNIK 94 (118)
T ss_dssp HHHHHHHHHHCTT---------SEEEEEEEETTT
T ss_pred HHHHHHHHHHCCC---------ceEEEEEEeCCc
Confidence 3446677788887 689999999864
No 53
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=24.60 E-value=49 Score=22.16 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEEeehhhhh
Q 030697 41 LTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 74 (173)
Q Consensus 41 i~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~ 74 (173)
+.-|+..++.||+ .++=|+|.|+..
T Consensus 71 l~Ele~C~k~~p~---------~yVRligfD~~~ 95 (109)
T 1rbl_M 71 LDEVRECRSEYGD---------CYIRVAGFDNIK 95 (109)
T ss_dssp HHHHHHHHHHCTT---------SEEEEEEEETTT
T ss_pred HHHHHHHHHHCCC---------CeEEEEEEeCCC
Confidence 3445677788887 589999999865
No 54
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=23.38 E-value=54 Score=21.97 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEEeehhhhh
Q 030697 41 LTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 74 (173)
Q Consensus 41 i~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~ 74 (173)
+.-|+..++.||+ .++=|+|.|+..
T Consensus 73 l~El~~C~k~~p~---------~yVRligfD~~~ 97 (110)
T 1svd_M 73 LAEIEACRSAYPT---------HQVKLVAYDNYA 97 (110)
T ss_dssp HHHHHHHHHHSTT---------SEEEEEEEETTT
T ss_pred HHHHHHHHHHCCC---------CeEEEEEEeCCC
Confidence 3345677778887 689999999865
No 55
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=22.71 E-value=43 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhcccccCCCceEEEEeehhhhhh
Q 030697 41 LTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLES 75 (173)
Q Consensus 41 i~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~ 75 (173)
+.-|+..++.||+ .++=|+|.|+...
T Consensus 83 l~El~~C~k~~P~---------~YVRligfDn~~q 108 (128)
T 1wdd_S 83 LKELEEAKKAYPD---------AFVRIIGFDNVRQ 108 (128)
T ss_dssp HHHHHHHHHHCTT---------SEEEEEEEETTTT
T ss_pred HHHHHHHHHHCCC---------CeEEEEEEeCCCC
Confidence 4445677788887 5899999998655
No 56
>4ae5_A Signal transduction protein trap; signaling protein, phosphorylation, RNAIII, quorum SENS biofilm, toxin production; 1.85A {Staphylococcus aureus}
Probab=21.12 E-value=45 Score=23.96 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhhhcccccCCCceEEEEeehhhhhhC
Q 030697 40 TLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESF 76 (173)
Q Consensus 40 Ti~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~~l 76 (173)
|.+.|+.+++.||+. +++++-|.|+..-|
T Consensus 10 t~~~L~~I~~~~~~r--------~l~l~~~~d~s~L~ 38 (167)
T 4ae5_A 10 TYGFLHQIKINNPTH--------QLFQFSASDTSVIF 38 (167)
T ss_dssp CHHHHHHHHHHCTTS--------CCEEEECSSSEEEE
T ss_pred CHHHHHHHHHHCCCC--------ceEEEEcCCceEEE
Confidence 689999999999986 78888888877544
No 57
>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*
Probab=20.50 E-value=56 Score=23.88 Aligned_cols=28 Identities=18% Similarity=0.033 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHhhhcccccCCCceEEEEeehhhhh
Q 030697 39 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 74 (173)
Q Consensus 39 yTi~tl~~l~~~~p~~~~~~~~~~~~~fliG~D~l~ 74 (173)
=|.+.|+.+++.||+. +++++-+.|+..
T Consensus 28 Gt~~~L~~I~~~~~dr--------~l~l~~~~~~~~ 55 (186)
T 3fj2_A 28 GTEHYLRQLMENYIGE--------NVTLLQNFSQSL 55 (186)
T ss_dssp ECHHHHHHHHHHTCSS--------SEEEEECSSCEE
T ss_pred CCHHHHHHHHHHCCCC--------ceEEEEcCCccE
Confidence 3689999999999985 788888888765
Done!