BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030701
MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKF
GKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL
MLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA

High Scoring Gene Products

Symbol, full name Information P value
GDC1
AT1G50900 		protein from Arabidopsis thaliana 6.2e-62

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030701
        (173 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2036421 - symbol:GDC1 "AT1G50900" species:3702...   633  6.2e-62   1


>TAIR|locus:2036421 [details] [associations]
            symbol:GDC1 "AT1G50900" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0080167 "response to karrikin" evidence=IEP]
            [GO:0090391 "granum assembly" evidence=IMP] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0006655
            "phosphatidylglycerol biosynthetic process" evidence=RCA]
            [GO:0019288 "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] InterPro:IPR002110
            PROSITE:PS50088 EMBL:CP002684 GO:GO:0009570 GO:GO:0006886
            Gene3D:1.25.40.20 InterPro:IPR020683 SUPFAM:SSF48403
            PROSITE:PS50297 GO:GO:0009941 GO:GO:0080167 GO:GO:0009535
            EMBL:AC079284 EMBL:AY072348 EMBL:AY114573 EMBL:AY085852
            IPI:IPI00525496 PIR:A96546 RefSeq:NP_564580.1 UniGene:At.27641
            UniGene:At.71538 UniGene:At.72433 ProteinModelPortal:Q8VY88
            SMR:Q8VY88 IntAct:Q8VY88 STRING:Q8VY88 PaxDb:Q8VY88 PRIDE:Q8VY88
            EnsemblPlants:AT1G50900.1 GeneID:841512 KEGG:ath:AT1G50900
            TAIR:At1g50900 eggNOG:NOG257421 HOGENOM:HOG000242344
            InParanoid:Q9C6J0 OMA:GDRPKIE ProtClustDB:CLSN2688655
            Genevestigator:Q8VY88 GO:GO:0090391 Uniprot:Q8VY88
        Length = 175

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 122/156 (78%), Positives = 136/156 (87%)

Query:    18 SNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQK 77
             S + SS    SS+FLGT+N     RP+R+GPSNGSR  CWFKFGKNGVDAENAGIYGSQ 
Sbjct:    20 STTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNGVDAENAGIYGSQS 79

Query:    78 RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLR 137
             RDDFDRDDVEQYFNYMGMLAVEGTY KMEALL+ NIHPVDILLMLAA+EGD+PKIEELL+
Sbjct:    80 RDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAATEGDRPKIEELLK 139

Query:   138 AGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
             AGA Y+VKDADGRTA++RA SEEI+DLIL +S QKA
Sbjct:   140 AGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      173       173   0.00097  108 3  11 22  0.43    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  145 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.60u 0.12s 16.72t   Elapsed:  00:00:01
  Total cpu time:  16.60u 0.12s 16.72t   Elapsed:  00:00:01
  Start:  Mon May 20 18:26:09 2013   End:  Mon May 20 18:26:10 2013

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