BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030701
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L+ AA G+K ++++L+ GA D+DGRT L A E K+++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIV 53
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L AA EG K ++ L+ GA KD+DGRT L A E K+++
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV 86
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L AA EG K ++ L+ GA KD+DGRT L A E K+++
Sbjct: 74 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV 119
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA---PSEEIKDLI 165
L AA EG K ++ L+ GA D+DGRT L+ A +EEI L+
Sbjct: 107 LHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLIL 166
L LAA EG +E LL+AGA KD DG T L A E EI +++L
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 100
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLIL 166
L LAA EG +E LL+AGA KD DG T L A E EI +++L
Sbjct: 84 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALE 154
L LAA EG +E LL+AGA +D G+TA +
Sbjct: 117 LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFD 151
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLIL 166
L LAA EG +E LL+AGA KD DG T L A E EI +++L
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 88
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLIL 166
L LAA EG +E LL+AGA KD DG T L A E EI +++L
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
L LAA EG +E LL+AGA +D G+T + A
Sbjct: 105 LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L+ AA G+K ++++L+ GA D+DGRT L A K+++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVV 53
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L AA G K ++ L+ GA KD+DGRT L A K+++
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 86
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L AA G K ++ L+ GA KD+DGRT L A K+++
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 119
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
L AA G K ++ L+ GA D+DGRT L+ A
Sbjct: 107 LHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA 143
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLIL 166
L LAA EG +E LL+AGA KD DG T L A E EI +++L
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 88
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLIL 166
L LAA EG +E LL+AGA KD DG T L A E EI +++L
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDL 164
L LAA EG +E LL+AGA +D G+T + A E +D+
Sbjct: 105 LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 114 HPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
H + LL +A+ +GD P +E LL+ G+ VKD G T L A
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA 50
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L+ AA G+K ++++LL GA D+DGRT L A K+++
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIV 53
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 97 AVEGTYDKMEALLSQNIHPV------DILLMLAASEGDKPKIEELLRAGASYTVKDADGR 150
A G D+++ LL P L AA G K ++ LL GA KD+DGR
Sbjct: 12 AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 151 TALERAPSEEIKDLI 165
T L A K+++
Sbjct: 72 TPLHYAAENGHKEIV 86
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L AA G K ++ LL GA KD+DGRT L A K+++
Sbjct: 74 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIV 119
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA---PSEEIKDLI 165
L AA G K ++ LL GA D+DGRT L+ A +EEI L+
Sbjct: 107 LHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L+ A EG ++ LL GA TVK DG TALE ++ IK L+
Sbjct: 72 LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALL 117
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L+ AA G+K ++++LL GA D+DG+T L A K+++
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVV 53
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 93 MGMLAVEGTYDKMEALLSQNIHPV------DILLMLAASEGDKPKIEELLRAGASYTVKD 146
+ + A G + ++ LLSQ P L LAA G K ++ LL GA KD
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 147 ADGRTALERAPSEEIKDLI 165
+DG+T L A K+++
Sbjct: 101 SDGKTPLHLAAENGHKEVV 119
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 93 MGMLAVEGTYDKMEALLSQNIHPV------DILLMLAASEGDKPKIEELLRAGASYTVKD 146
+ + A G + ++ LLSQ P L LAA G K ++ LL GA D
Sbjct: 74 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 147 ADGRTALERA 156
+DGRT L+ A
Sbjct: 134 SDGRTPLDLA 143
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 62 KNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALL--SQNIHPVDIL 119
K+G D + A +YG F + + A+ G + +E LL +++ D+
Sbjct: 68 KHGADVDAADVYG---------------FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT 112
Query: 120 ----LMLAASEGDKPKIEELLRAGASYTVKDADGRTALE 154
L LAA EG +E LL+ GA +D G+TA +
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
L+ A EG ++ LL GA TVK DG TA E ++ IK L+
Sbjct: 77 LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNF 168
L +AASEG +E LL+ GA KD TAL A +E+ +L++ +
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE 159
L LAA G E LLRAG S + RT L A SE
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE 77
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLIL 166
L LAA G ++ LL AGA KD +GRT L A E+ L+L
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLIL 166
L LAA G ++ LL AGA KD +GRT L A E+ L+L
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
L LAA G ++ LL AGA KD +GRT L A
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
L LAA G ++ LL AGA KD +GRT L A
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 75
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
L LAA G ++ LL AGA KD +GRT L A
Sbjct: 72 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALE 154
L LAA EG +E LL+AGA +D G+TA +
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFD 73
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA---PSEEIKDLIL 166
LMLA S G ++ LL A V+D DG TAL A +EI L+L
Sbjct: 187 LMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLILNFS 169
L LAA G +E LL+ GA +D GRT L A + EI +++L +
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYG 103
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLILNFS 169
L LAA G +E LL+ GA +D DG T L A EI +++L +
Sbjct: 51 LHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLIL 166
L LAA G +E LL+ GA +DA G T L A EI +++L
Sbjct: 84 LHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 85 DVEQYFNY----MGMLAVEGTYDKMEALL--SQNIHPVDI----LLMLAASEGDKPKIEE 134
D Y +Y + M A G + +E LL +++ VD L LAAS G +E
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 135 LLRAGASYTVKDADGRTALERA 156
LL+ GA KDA G T L A
Sbjct: 87 LLKYGADVNAKDATGITPLYLA 108
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLILNFS 169
L LAA G +E LL+ GA KD +G T L A + EI +++L +
Sbjct: 84 LHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 119 LLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
+ + A S GD ++ LL GA + DG TAL +A ++ D++
Sbjct: 43 VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMV 89
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLILNF 168
L LAA G +E LL+ GA D+ GRT L A + EI +++L +
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEY 102
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
L LAA+ G +E LL+ GA D DG T L A
Sbjct: 84 LHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Query: 32 LGTKNNLKCFRPS-----RIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQKRDDFDRDD- 85
L +N +K FRPS + + +R W K G N V AE DR+D
Sbjct: 368 LYAENPVKDFRPSPGQLTSVSFPSWARVDTWVKKGTN-VSAEYDPTLAKIIVHGKDRNDA 426
Query: 86 ---VEQYFNYMGMLAVEGTYDKMEALLSQNI-HPVDILLMLAASEGDKPKIEELLRAGAS 141
+ Q N + D + ++ S + + + S KP E+L GA+
Sbjct: 427 IMKLNQALNETAVYGCITNIDYLRSIASSKMFKEAKVATKVLDSFDYKPCAFEVLAPGAN 486
Query: 142 YTVKDADGRTALER 155
+V+D GRT R
Sbjct: 487 TSVQDYPGRTGYWR 500
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE---EIKDLILNFS 169
L LAA G +E LL+ GA D GRT L A + EI +++L +
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYG 103
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 93 MGMLAVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKD 146
+ + A G + +E LL +++ D L L LAA G +E LL+ GA KD
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Query: 147 ADGRTALERAPSE---EIKDLILNFS 169
+G T L A + EI +++L +
Sbjct: 111 DNGITPLHLAANRGHLEIVEVLLKYG 136
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDL 164
L LAA+ G +E LL+ GA +D G+TA + + + +DL
Sbjct: 117 LHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDL 161
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
L LAA G +E LL+ GA D+DG T L A
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA 120
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDL 164
L LAA G +E LL+ GA +DA G TA + + ++ +DL
Sbjct: 109 LHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
LM AA ++ L++AGA KDA+G T L A
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA 84
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALE 154
L LAA +G +E LL+ GA +D G+TA +
Sbjct: 117 LHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
>pdb|3QWU|A Chain A, Putative Atp-Dependent Dna Ligase From Aquifex Aeolicus.
pdb|3QWU|B Chain B, Putative Atp-Dependent Dna Ligase From Aquifex Aeolicus
Length = 370
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 83 RDDVEQY-FNYM-----GMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELL 136
++DV+ + F++M G L+ E +KME + N+ V+IL ASE KI+E+L
Sbjct: 149 KEDVQLFVFDFMKKNEQGFLSQE---EKMELIEKYNLPHVEILGRFTASEEGIKKIKEIL 205
Query: 137 R 137
+
Sbjct: 206 K 206
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
L LAA G+ +E+L AGA V + G TAL A
Sbjct: 49 LHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
L LAA G+ +E+L AGA V + G TAL A
Sbjct: 49 LHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,008,128
Number of Sequences: 62578
Number of extensions: 207100
Number of successful extensions: 608
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 91
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)