BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030702
MAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIAN
EKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMD
VEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV

High Scoring Gene Products

Symbol, full name Information P value
AT3G57360 protein from Arabidopsis thaliana 2.0e-40
tsen54
tRNA splicing endonuclease 54 homolog (S. cerevisiae)
gene_product from Danio rerio 7.2e-12
Tsen54
tRNA splicing endonuclease 54 homolog (S. cerevisiae)
protein from Mus musculus 9.8e-11
Tsen54
tRNA splicing endonuclease 54 homolog (S. cerevisiae)
gene from Rattus norvegicus 9.8e-11
TSEN54
Uncharacterized protein
protein from Gallus gallus 2.8e-10
TSEN54
Uncharacterized protein
protein from Bos taurus 6.6e-09
TSEN54
tRNA-splicing endonuclease subunit Sen54
protein from Homo sapiens 1.4e-08
TSEN54
Uncharacterized protein
protein from Canis lupus familiaris 1.4e-08
CG5626 protein from Drosophila melanogaster 9.9e-07

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030702
        (173 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2082553 - symbol:AT3G57360 "AT3G57360" species...   430  2.0e-40   1
ZFIN|ZDB-GENE-050522-454 - symbol:tsen54 "tRNA splicing e...   143  7.2e-12   2
MGI|MGI:1923515 - symbol:Tsen54 "tRNA splicing endonuclea...   141  9.8e-11   2
RGD|1597379 - symbol:Tsen54 "tRNA splicing endonuclease 5...   141  9.8e-11   2
UNIPROTKB|F1N9B2 - symbol:TSEN54 "Uncharacterized protein...   134  2.8e-10   2
UNIPROTKB|E1BJ21 - symbol:TSEN54 "Uncharacterized protein...   142  6.6e-09   1
UNIPROTKB|Q7Z6J9 - symbol:TSEN54 "tRNA-splicing endonucle...   139  1.4e-08   1
UNIPROTKB|E2RAR4 - symbol:TSEN54 "Uncharacterized protein...   139  1.4e-08   1
FB|FBgn0036266 - symbol:CG5626 species:7227 "Drosophila m...   101  9.9e-07   2


>TAIR|locus:2082553 [details] [associations]
            symbol:AT3G57360 "AT3G57360" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR KO:K15326
            InterPro:IPR024336 Pfam:PF12928 EMBL:BT014989 EMBL:BT015676
            IPI:IPI00539686 RefSeq:NP_191295.4 UniGene:At.34839
            ProteinModelPortal:Q6DBN3 SMR:Q6DBN3 PRIDE:Q6DBN3 DNASU:824903
            EnsemblPlants:AT3G57360.1 GeneID:824903 KEGG:ath:AT3G57360
            TAIR:At3g57360 eggNOG:NOG267210 HOGENOM:HOG000070618 OMA:SACAGEC
            PhylomeDB:Q6DBN3 ProtClustDB:CLSN2681551 Genevestigator:Q6DBN3
            Uniprot:Q6DBN3
        Length = 254

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 87/169 (51%), Positives = 116/169 (68%)

Query:     1 MAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDN-NDLCLPLKEIYEKIA 59
             MAEV  K+GK+WTTTGI+R+GKTYC IEE L+L+EIG L +L N +D+ +PLK++YEKIA
Sbjct:    52 MAEVEVKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKIA 111

Query:    60 NEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKI---PKGRDINITSDPVSLQVTPKRH 116
              EKSGCSWE +EVYR+LK LGYI+GRHGV W +K    P G + +  +            
Sbjct:   112 EEKSGCSWENYEVYRYLKGLGYILGRHGVSWTLKDAARPNGEEESACAGEC--------- 162

Query:   117 GVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFL 165
                   P +  ++  L  ++QI + + VFDVYLPN +FKKS PG+PSF+
Sbjct:   163 ------PADNDTVTKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFV 205


>ZFIN|ZDB-GENE-050522-454 [details] [associations]
            symbol:tsen54 "tRNA splicing endonuclease 54
            homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0045211
            "postsynaptic membrane" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0006811 "ion transport" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0005230 "extracellular
            ligand-gated ion channel activity" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0048854 "brain morphogenesis"
            evidence=IMP] InterPro:IPR006029 InterPro:IPR006201
            InterPro:IPR006202 InterPro:IPR018000 Pfam:PF02931 Pfam:PF02932
            PRINTS:PR00252 PROSITE:PS00236 ZFIN:ZDB-GENE-050522-454
            GO:GO:0016021 GO:GO:0045211 GO:GO:0005230 Gene3D:2.70.170.10
            SUPFAM:SSF90112 SUPFAM:SSF63712 GO:GO:0048854 InterPro:IPR024337
            InterPro:IPR024336 PANTHER:PTHR21027 Pfam:PF12928
            GeneTree:ENSGT00390000004214 EMBL:CABZ01087516 EMBL:CABZ01087517
            EMBL:CABZ01087518 EMBL:CABZ01087519 EMBL:CABZ01087520
            EMBL:CABZ01087521 IPI:IPI00935059 Ensembl:ENSDART00000113247
            Bgee:E7FCP2 Uniprot:E7FCP2
        Length = 891

 Score = 143 (55.4 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
 Identities = 38/116 (32%), Positives = 57/116 (49%)

Query:     1 MAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIAN 60
             + E+    GK W T G    GK Y   EE L+L E G + +    DL L +++ YE+  +
Sbjct:    89 LVELQSPAGKFWQTMGFSERGKQYLQPEEALYLMECGNVQVF-YRDLPLSIQDGYERFLS 147

Query:    61 EKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINI-TSDPVSLQVTPKR 115
               +  +   ++V+ HLK LGY+V R   P  V     R +N+  SD    Q+  KR
Sbjct:   148 SDT-VTLHQYQVFGHLKRLGYVVNRFD-PSSVSSTYERQLNLPASDKQKKQLKRKR 201

 Score = 55 (24.4 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query:   145 FDVYLPNR--KFKKSCPGDPSFLLYLTCKY 172
             FDVY P+   +FKKS PG P +     C +
Sbjct:   424 FDVYQPDTVAEFKKSHPGKP-YTRMCVCSF 452


>MGI|MGI:1923515 [details] [associations]
            symbol:Tsen54 "tRNA splicing endonuclease 54 homolog (S.
            cerevisiae)" species:10090 "Mus musculus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0004519 "endonuclease
            activity" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006388 "tRNA
            splicing, via endonucleolytic cleavage and ligation" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008033 "tRNA
            processing" evidence=IEA] MGI:MGI:1923515 GO:GO:0005730
            GO:GO:0006397 GO:GO:0006388 EMBL:AL645852 CTD:283989
            eggNOG:NOG327149 HOGENOM:HOG000049169 HOVERGEN:HBG061211 KO:K15326
            OMA:QISFPNM OrthoDB:EOG4XKV79 ChiTaRS:TSEN54 InterPro:IPR024337
            InterPro:IPR024336 PANTHER:PTHR21027 Pfam:PF12928 EMBL:AK002758
            EMBL:AK089005 IPI:IPI00120951 IPI:IPI00454154 RefSeq:NP_083833.1
            UniGene:Mm.275438 ProteinModelPortal:Q8C2A2 SMR:Q8C2A2
            STRING:Q8C2A2 PhosphoSite:Q8C2A2 PRIDE:Q8C2A2
            Ensembl:ENSMUST00000021134 Ensembl:ENSMUST00000106481 GeneID:76265
            KEGG:mmu:76265 UCSC:uc007miq.1 UCSC:uc011yhp.1
            GeneTree:ENSGT00390000004214 InParanoid:B1ATA4 NextBio:344883
            Bgee:Q8C2A2 Genevestigator:Q8C2A2 GermOnline:ENSMUSG00000020781
            Uniprot:Q8C2A2
        Length = 525

 Score = 141 (54.7 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
 Identities = 34/100 (34%), Positives = 53/100 (53%)

Query:     3 EVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEK 62
             E+    GK W T G    G+     EE L+L E G++ L    DL L ++E Y+ +  E 
Sbjct:    90 ELTSPAGKFWQTMGYSEEGRQRLHPEEALYLLECGSIQLF-YQDLPLSIQEAYQLLLTED 148

Query:    63 SGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINI 102
             +  S+  ++V+ HLK LGY+V R  +  +V  P  R +N+
Sbjct:   149 T-LSFLQYQVFSHLKRLGYVVRRFQLSSVVS-PYERQLNL 186

 Score = 40 (19.1 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query:   145 FDVYLPNR--KFKKSCPGDP 162
             FDVY  +    F+K+ PG P
Sbjct:   449 FDVYQADAVATFRKNSPGKP 468


>RGD|1597379 [details] [associations]
            symbol:Tsen54 "tRNA splicing endonuclease 54 homolog (S.
            cerevisiae)" species:10116 "Rattus norvegicus" [GO:0006388 "tRNA
            splicing, via endonucleolytic cleavage and ligation"
            evidence=IEA;ISO] RGD:1597379 EMBL:CH473948 GO:GO:0006388
            CTD:283989 KO:K15326 OMA:QISFPNM OrthoDB:EOG4XKV79
            InterPro:IPR024337 InterPro:IPR024336 PANTHER:PTHR21027
            Pfam:PF12928 GeneTree:ENSGT00390000004214 IPI:IPI00207585
            RefSeq:NP_001103046.1 UniGene:Rn.198903 Ensembl:ENSRNOT00000006327
            GeneID:690308 KEGG:rno:690308 NextBio:740625 Uniprot:D3ZZT6
        Length = 525

 Score = 141 (54.7 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
 Identities = 34/100 (34%), Positives = 53/100 (53%)

Query:     3 EVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEK 62
             E+    GK W T G    G+     EE L+L E G++ L    DL L ++E Y+ +  E 
Sbjct:    90 ELTSPAGKFWQTMGYSEEGRQRLHPEEALYLLECGSIQLF-YQDLPLSIQEAYQLLLTED 148

Query:    63 SGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINI 102
             +  S+  ++V+ HLK LGY+V R  +  +V  P  R +N+
Sbjct:   149 T-LSFLQYQVFSHLKRLGYVVRRFQLSSVVS-PYERQLNL 186

 Score = 40 (19.1 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query:   145 FDVYLPNR--KFKKSCPGDP 162
             FDVY  +    F+K+ PG P
Sbjct:   449 FDVYQADAVATFRKNSPGKP 468


>UNIPROTKB|F1N9B2 [details] [associations]
            symbol:TSEN54 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0006388 "tRNA splicing, via endonucleolytic
            cleavage and ligation" evidence=IEA] GO:GO:0006388 OMA:QISFPNM
            InterPro:IPR024337 InterPro:IPR024336 PANTHER:PTHR21027
            Pfam:PF12928 GeneTree:ENSGT00390000004214 EMBL:AADN02053664
            IPI:IPI00604251 Ensembl:ENSGALT00000013049 Uniprot:F1N9B2
        Length = 530

 Score = 134 (52.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 35/104 (33%), Positives = 55/104 (52%)

Query:     1 MAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIAN 60
             + E+    GK W T G    GK     EE L+L E G+L L    D+ + ++E YE + +
Sbjct:    87 VVELESPAGKFWHTMGFSERGKQCLLPEEALYLLECGSLQLF-YKDVPMSVREAYEILLS 145

Query:    61 EKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITS 104
             +++  +   ++V+ HLK LG+IV R   P  V  P  R +N+ S
Sbjct:   146 QEA-MNLLHYQVFSHLKQLGFIVLRFN-PSTVLSPYERQLNLES 187

 Score = 43 (20.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query:   138 INEVRPVFDVYLPNR--KFKKSCPGDP 162
             +  ++  F+VY  +   KFKK+ PG P
Sbjct:   447 LESIKIDFNVYQADAVAKFKKTNPGKP 473

 Score = 35 (17.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query:   121 VEPKEESSLVALFYNIQINEVRPVFD 146
             ++P+E +SL A+   I + +   + D
Sbjct:   413 LQPEEATSLAAVRQQISVLQPSHILD 438


>UNIPROTKB|E1BJ21 [details] [associations]
            symbol:TSEN54 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0006388 "tRNA splicing, via endonucleolytic cleavage
            and ligation" evidence=IEA] GO:GO:0006388 CTD:283989 KO:K15326
            OMA:QISFPNM InterPro:IPR024337 InterPro:IPR024336 PANTHER:PTHR21027
            Pfam:PF12928 GeneTree:ENSGT00390000004214 EMBL:DAAA02049521
            IPI:IPI00705093 RefSeq:NP_001192620.1 UniGene:Bt.58475
            Ensembl:ENSBTAT00000001090 GeneID:511091 KEGG:bta:511091
            NextBio:20869773 Uniprot:E1BJ21
        Length = 528

 Score = 142 (55.0 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 37/113 (32%), Positives = 57/113 (50%)

Query:     3 EVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEK 62
             E+    GK W T G    G+     EE L+L E G++ L  + DL L ++E Y+ +  E 
Sbjct:    90 ELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIQLF-HQDLPLSIQEAYQLLLTED 148

Query:    63 SGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKR 115
             +  ++  ++V+ HLK LGY+V R   P  V  P  R +N+      L+   KR
Sbjct:   149 T-VTFLQYQVFSHLKRLGYVVRRFQ-PSSVLSPYERQLNLDGGAQCLEGKRKR 199


>UNIPROTKB|Q7Z6J9 [details] [associations]
            symbol:TSEN54 "tRNA-splicing endonuclease subunit Sen54"
            species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006388
            "tRNA splicing, via endonucleolytic cleavage and ligation"
            evidence=IDA] GO:GO:0005730 GO:GO:0006397 GO:GO:0006388
            EMBL:AC100787 Orphanet:2524 EMBL:AK094466 EMBL:BC047793
            EMBL:BC053643 IPI:IPI00329143 IPI:IPI00429119 RefSeq:NP_997229.2
            UniGene:Hs.378501 ProteinModelPortal:Q7Z6J9 SMR:Q7Z6J9
            IntAct:Q7Z6J9 STRING:Q7Z6J9 PhosphoSite:Q7Z6J9 DMDM:296452961
            PaxDb:Q7Z6J9 PRIDE:Q7Z6J9 Ensembl:ENST00000333213 GeneID:283989
            KEGG:hsa:283989 UCSC:uc002joe.1 UCSC:uc002jof.1 CTD:283989
            GeneCards:GC17P073512 H-InvDB:HIX0022516 HGNC:HGNC:27561 MIM:225753
            MIM:277470 MIM:608755 neXtProt:NX_Q7Z6J9 Orphanet:166063
            Orphanet:166068 PharmGKB:PA142670692 eggNOG:NOG327149
            HOGENOM:HOG000049169 HOVERGEN:HBG061211 InParanoid:Q7Z6J9 KO:K15326
            OMA:QISFPNM OrthoDB:EOG4XKV79 PhylomeDB:Q7Z6J9 ChiTaRS:TSEN54
            GenomeRNAi:283989 NextBio:94415 ArrayExpress:Q7Z6J9 Bgee:Q7Z6J9
            CleanEx:HS_TSEN54 Genevestigator:Q7Z6J9 GermOnline:ENSG00000182173
            InterPro:IPR024337 InterPro:IPR024336 PANTHER:PTHR21027
            Pfam:PF12928 Uniprot:Q7Z6J9
        Length = 526

 Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 34/108 (31%), Positives = 57/108 (52%)

Query:     3 EVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEK 62
             E+    GK W T G    G+     EE L+L E G+++L  + DL L ++E Y+ +  + 
Sbjct:    90 ELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLF-HQDLPLSIQEAYQLLLTDH 148

Query:    63 SGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQ 110
             +  ++  ++V+ HLK LGY+V R   P  V  P  R +N+ +    L+
Sbjct:   149 T-VTFLQYQVFSHLKRLGYVVRRFQ-PSSVLSPYERQLNLDASVQHLE 194


>UNIPROTKB|E2RAR4 [details] [associations]
            symbol:TSEN54 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006388 "tRNA splicing, via endonucleolytic
            cleavage and ligation" evidence=IEA] GO:GO:0006388 CTD:283989
            KO:K15326 OMA:QISFPNM InterPro:IPR024337 InterPro:IPR024336
            PANTHER:PTHR21027 Pfam:PF12928 GeneTree:ENSGT00390000004214
            EMBL:AAEX03006297 RefSeq:XP_540434.3 Ensembl:ENSCAFT00000007733
            GeneID:483315 KEGG:cfa:483315 Uniprot:E2RAR4
        Length = 531

 Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 34/108 (31%), Positives = 55/108 (50%)

Query:     3 EVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEK 62
             E+    GK W T G    G+     EE L+L E G++ L  + DL L ++E Y+ +  E 
Sbjct:    90 ELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIQLF-HQDLPLSIQEAYQLLLTED 148

Query:    63 SGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQ 110
             +  ++  ++V+ HLK LGY+V R   P  +  P  R +N+      L+
Sbjct:   149 A-VTFLQYQVFSHLKRLGYVVRRFQ-PGSILSPYERQLNLDGSAQCLE 194


>FB|FBgn0036266 [details] [associations]
            symbol:CG5626 species:7227 "Drosophila melanogaster"
            [GO:0004017 "adenylate kinase activity" evidence=ISS] EMBL:AE014296
            GO:GO:0004017 GO:GO:0000213 KO:K15326 InterPro:IPR024337
            InterPro:IPR024336 PANTHER:PTHR21027 Pfam:PF12928
            GeneTree:ENSGT00390000004214 RefSeq:NP_648559.1 UniGene:Dm.15357
            ProteinModelPortal:Q9VTV4 SMR:Q9VTV4 IntAct:Q9VTV4 MINT:MINT-847890
            PaxDb:Q9VTV4 EnsemblMetazoa:FBtr0076016 GeneID:39397
            KEGG:dme:Dmel_CG5626 UCSC:CG5626-RA FlyBase:FBgn0036266
            eggNOG:NOG289123 InParanoid:Q9VTV4 OMA:KLYLEYY OrthoDB:EOG4STQM0
            PhylomeDB:Q9VTV4 GenomeRNAi:39397 NextBio:813441
            ArrayExpress:Q9VTV4 Bgee:Q9VTV4 Uniprot:Q9VTV4
        Length = 383

 Score = 101 (40.6 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 30/89 (33%), Positives = 43/89 (48%)

Query:     1 MAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIAN 60
             +AEV  K GK +   G    GK Y    E +FL E+G L L +   L + +++ Y  +  
Sbjct:    88 VAEVKRKDGK-FENFGYSEQGKLYLEYYEAMFLLEVGRLQL-EYCGLVVSIEQAYVLLLG 145

Query:    61 EKSGCSWELFEVYRHLKSLGYIVGRHGVP 89
             E     +  + VY  L   GYIV +H VP
Sbjct:   146 ELESERYTNYLVYSALSRSGYIVVKH-VP 173

 Score = 68 (29.0 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query:   144 VFDVYLPNRKFKKSCPGDPSF 164
             +FD++L NR FKKS P  P+F
Sbjct:   316 IFDLHLHNRGFKKSAPNAPNF 336


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.140   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      173       173   0.00097  108 3  11 22  0.41    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  168 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.92u 0.07s 16.99t   Elapsed:  00:00:01
  Total cpu time:  16.92u 0.07s 16.99t   Elapsed:  00:00:01
  Start:  Thu May  9 17:01:26 2013   End:  Thu May  9 17:01:27 2013

Back to top