BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030702
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C2A2|SEN54_MOUSE tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus GN=Tsen54
PE=2 SV=2
Length = 525
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 3 EVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEK 62
E+ GK W T G G+ EE L+L E G++ L DL L ++E Y+ + E
Sbjct: 90 ELTSPAGKFWQTMGYSEEGRQRLHPEEALYLLECGSIQLF-YQDLPLSIQEAYQLLLTED 148
Query: 63 SGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINI 102
+ S+ ++V+ HLK LGY+V R + +V P R +N+
Sbjct: 149 T-LSFLQYQVFSHLKRLGYVVRRFQLSSVVS-PYERQLNL 186
>sp|Q7Z6J9|SEN54_HUMAN tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54
PE=1 SV=3
Length = 526
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 3 EVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEK 62
E+ GK W T G G+ EE L+L E G+++L + DL L ++E Y+ + +
Sbjct: 90 ELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLF-HQDLPLSIQEAYQLLLTDH 148
Query: 63 SGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQ 110
+ ++ ++V+ HLK LGY+V R P V P R +N+ + L+
Sbjct: 149 T-VTFLQYQVFSHLKRLGYVVRRFQ-PSSVLSPYERQLNLDASVQHLE 194
>sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo2 PE=1 SV=1
Length = 1328
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 64 GCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKR--HGVMDV 121
G W LF YR +S G+ H P I + KG D+ I TP R +M V
Sbjct: 525 GLQWVLFYYYRGCQSWGWYYNYHFAPKISDVLKGLDVKIDFK----MGTPFRPFEQLMAV 580
Query: 122 EPKEESSLV-ALFYNIQINEVRPVFDVYLPN 151
P +LV F ++ +N P+ D Y N
Sbjct: 581 LPARSQALVPPCFRDLMVNSESPIIDFYPEN 611
>sp|Q74ZJ5|SEN54_ASHGO tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SEN54 PE=3 SV=1
Length = 455
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 1 MAEVVEKKGKMWTTTGIV-RNGKTYCSIEETLFLAEIGAL--YLL--------DNNDLCL 49
MA + +G T G V ++G+ + + E ++L E G + YL ++ D+ L
Sbjct: 96 MARIPNARGSFTNTMGKVDKHGQCWLQLHEFVYLVERGTVSPYLALTVGDEKSNHEDVLL 155
Query: 50 PLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIV 83
++++Y + S + F VY HLK LG+IV
Sbjct: 156 SVQDVYALFS---STEELDEFLVYAHLKRLGFIV 186
>sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=XRN1 PE=1 SV=1
Length = 1528
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 64 GCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEP 123
G W L+ YR S + H P I + KG D +I D +S TP + +M V P
Sbjct: 540 GLQWVLYYYYRGCPSWSWYYPHHYAPRISDLAKGLDQDIEFD-LSKPFTPFQQ-LMAVLP 597
Query: 124 KEESSLV-ALFYNIQINEVRPVFDVY 148
+ +L+ F + +E P+ D Y
Sbjct: 598 ERSKNLIPPAFRPLMYDEQSPIHDFY 623
>sp|B6YXU4|ENDA_THEON tRNA-splicing endonuclease OS=Thermococcus onnurineus (strain
NA1) GN=endA PE=3 SV=1
Length = 171
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 16 GIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRH 75
G V NGK + S+ E +L E G + +LD L +E++E + +K + VY+
Sbjct: 32 GEVVNGKLFLSLIEAAYLMERGKIKVLDGGK-ELSFEELFE-LGRKKDDQFDIKYLVYKD 89
Query: 76 LKSLGYIV 83
L+ GYIV
Sbjct: 90 LRDRGYIV 97
>sp|A5I3F5|PIP_CLOBH Proline iminopeptidase OS=Clostridium botulinum (strain Hall / ATCC
3502 / NCTC 13319 / Type A) GN=pip PE=3 SV=1
Length = 293
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Query: 46 DLCLPL--KEIYEKIANEKSGCSWELFEVYRHL 76
DLC PL K +Y+KI N + WELFE RH+
Sbjct: 244 DLCSPLVAKTMYDKIPNSE----WELFEFSRHM 272
>sp|A1RSY7|ENDA_PYRIL tRNA-splicing endonuclease OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=endA PE=3 SV=1
Length = 183
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 25 CSIEETLFLAEIGALYLLDNNDL-CLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIV 83
++ E L+LAE G L ++ N LP K I ++ EK +++++Y++ + LGY+V
Sbjct: 50 LALYEALYLAERGKLKVVSKNGTEVLPEKLI--ELGREKIKNFDDIYKIYKYFRDLGYVV 107
>sp|O74908|SEN54_SCHPO Probable tRNA-splicing endonuclease subunit sen54
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen54 PE=3 SV=1
Length = 384
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1 MAEVVEKKGKMWTTTGIV-RNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIA 59
M+ V + G ++ T G + + EETL+L E G++ L + L+ +Y A
Sbjct: 94 MSCVEKAHGPLFKTMGTADSQNRMWLLPEETLYLVERGSMECWSEEGLPMSLQAVYS--A 151
Query: 60 NEKSGCSWELFEVYRHLKSLGYIVGRHGV 88
+ S E + VY HL+ G+ V R +
Sbjct: 152 SIPLCGSLENYLVYAHLRRCGFSVIRSNL 180
>sp|A1R728|PDXT_ARTAT Glutamine amidotransferase subunit PdxT OS=Arthrobacter aurescens
(strain TC1) GN=pdxT PE=3 SV=2
Length = 233
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 64 GCSWELFEVYRHLKSLGYIVGRHGV----------PWIVKIPKGRDINITSDPVSLQVTP 113
G E FE K L + G GV PW+ ++ G ++ DP T
Sbjct: 131 GRQRESFETDLDFKGLDFSAGESGVDPVHAVFIRGPWVERVGSGVEVLAQVDPDHASHTA 190
Query: 114 KRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYL 149
HGV + L+A ++ ++ + V ++++
Sbjct: 191 TLHGVARIVAVRSGQLLATSFHPEVTGEKRVHELFI 226
>sp|Q0VRN6|GLPK_ALCBS Glycerol kinase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=glpK PE=3 SV=1
Length = 497
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 2 AEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANE 61
E VE ++ TT G NGKT ++E ++F+A +L D L +E
Sbjct: 273 GEAVESHNRLLTTVGYRLNGKTTYALEGSIFVAGAAIQWLRDGLHLIRDARETEALARRV 332
Query: 62 KSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSD 105
S L + L G PW +G + +T D
Sbjct: 333 GSAGGVYLVPAFTGL----------GAPWWDPHARGALMGLTRD 366
>sp|Q97ZY3|ENDA_SULSO tRNA-splicing endonuclease OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=endA PE=3 SV=1
Length = 182
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 25 CSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG 84
S+ E+++L + G + ++D N L K++YE A + + L++VY L+ G+IV
Sbjct: 49 LSLIESVYLTKKGLINVVDKNGDLLEYKKLYEYSAMKINKFEI-LYKVYEDLREKGFIV- 106
Query: 85 RHGVPW 90
R GV +
Sbjct: 107 RSGVKY 112
>sp|C3MWW5|ENDA_SULIM tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=endA PE=3 SV=1
Length = 182
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 25 CSIEETLFLAEIGALYLLDNNDLCLPLKEIYE---KIANEKSGCSWELFEVYRHLKSLGY 81
S+ E+++LA+ G + ++D N L +++YE KI N+ ++ VY L+ G+
Sbjct: 49 LSLIESVYLAKKGLIKVIDKNGEVLEYEKLYEYSSKIINKFD----IMYRVYEDLREKGF 104
Query: 82 IVGRHGVPW 90
IV R GV +
Sbjct: 105 IV-RSGVKY 112
>sp|Q184M8|PIP_CLOD6 Proline iminopeptidase OS=Clostridium difficile (strain 630) GN=pip
PE=3 SV=1
Length = 293
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 46 DLCLP--LKEIYEKIANEKSGCSWELFEVYRHL 76
DLC P K +Y++I N K WELFE RH+
Sbjct: 244 DLCSPYIAKTMYDRIPNSK----WELFEYSRHM 272
>sp|C4KIA4|ENDA_SULIK tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=endA PE=3 SV=1
Length = 182
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 25 CSIEETLFLAEIGALYLLDNNDLCLPLKEIYE---KIANEKSGCSWELFEVYRHLKSLGY 81
S+ E+++LA+ G + ++D N L +++YE KI N+ ++ VY L+ G+
Sbjct: 49 LSLIESVYLAKKGLIKVIDKNGEVLEYEKLYEYSSKIINKFD----IMYRVYEDLREKGF 104
Query: 82 IVGRHGVPW 90
IV R GV +
Sbjct: 105 IV-RSGVKY 112
>sp|C3N6N2|ENDA_SULIA tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain
M.16.27) GN=endA PE=3 SV=1
Length = 182
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 25 CSIEETLFLAEIGALYLLDNNDLCLPLKEIYE---KIANEKSGCSWELFEVYRHLKSLGY 81
S+ E+++LA+ G + ++D N L +++YE KI N+ ++ VY L+ G+
Sbjct: 49 LSLIESVYLAKKGLIKVIDKNGEVLEYEKLYEYSSKIINKFD----IMYRVYEDLREKGF 104
Query: 82 IVGRHGVPW 90
IV R GV +
Sbjct: 105 IV-RSGVKY 112
>sp|C3N746|ENDA_SULIY tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=endA PE=3 SV=1
Length = 182
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 25 CSIEETLFLAEIGALYLLDNNDLCLPLKEIYE---KIANEKSGCSWELFEVYRHLKSLGY 81
S+ E+++LA+ G + ++D N L +++YE KI N+ ++ VY L+ G+
Sbjct: 49 LSLIESVYLAKKGLIKVIDKNGEVLEYEKLYEYSSKIINKFD----IMYRVYEDLREKGF 104
Query: 82 IVGRHGVPW 90
IV R GV +
Sbjct: 105 IV-RSGVKY 112
>sp|C3NGJ0|ENDA_SULIN tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=endA PE=3 SV=1
Length = 182
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 25 CSIEETLFLAEIGALYLLDNNDLCLPLKEIYE---KIANEKSGCSWELFEVYRHLKSLGY 81
S+ E+++LA+ G + ++D N L +++YE KI N+ ++ VY L+ G+
Sbjct: 49 LSLIESVYLAKKGLIKVIDKNGEVLEYEKLYEYSSKIINKFD----IMYRVYEDLREKGF 104
Query: 82 IVGRHGVPW 90
IV R GV +
Sbjct: 105 IV-RSGVKY 112
>sp|C3MQX7|ENDA_SULIL tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=endA PE=3 SV=1
Length = 182
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 25 CSIEETLFLAEIGALYLLDNNDLCLPLKEIYE---KIANEKSGCSWELFEVYRHLKSLGY 81
S+ E+++LA+ G + ++D N L +++YE KI N+ ++ VY L+ G+
Sbjct: 49 LSLIESVYLAKKGLIKVIDKNGEVLEYEKLYEYSSKIINKFD----IMYRVYEDLREKGF 104
Query: 82 IVGRHGVPW 90
IV R GV +
Sbjct: 105 IV-RSGVKY 112
>sp|Q9PTD7|CING_XENLA Cingulin OS=Xenopus laevis GN=cgn PE=1 SV=2
Length = 1360
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 48 CLPLKEIYEKIANEKSGCSWELFEV 72
C LKE+YEK NE S S EL EV
Sbjct: 487 CSRLKELYEKKKNELSAMSQELMEV 511
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,958,552
Number of Sequences: 539616
Number of extensions: 2856791
Number of successful extensions: 5909
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5901
Number of HSP's gapped (non-prelim): 29
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)