Query 030702
Match_columns 173
No_of_seqs 167 out of 278
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ohc_A TRNA-splicing endonucle 99.5 3E-15 1E-19 128.3 2.7 78 2-90 11-92 (289)
2 3iey_A TRNA-splicing endonucle 99.5 5.3E-15 1.8E-19 116.4 1.3 66 19-86 11-76 (154)
3 2zyz_B TRNA-splicing endonucle 99.5 2.2E-14 7.4E-19 115.3 3.8 65 21-86 46-110 (183)
4 1a79_A TRNA endonuclease; 2.28 99.4 4.8E-14 1.6E-18 112.2 4.4 73 13-86 25-97 (171)
5 2cv8_A TRNA-splicing endonucle 99.4 1E-13 3.4E-18 111.1 3.2 65 20-86 43-107 (180)
6 3ajv_B TRNA-splicing endonucle 99.3 5.3E-13 1.8E-17 107.6 3.4 64 21-86 52-115 (186)
7 3iey_B NEQ261; protein heterod 99.3 1.7E-13 5.7E-18 107.7 -2.8 73 14-90 12-84 (153)
8 3ajv_A Putative uncharacterize 99.1 1.7E-11 5.9E-16 99.4 2.2 66 14-87 58-123 (190)
9 1r0v_A ENDA, tRNA-intron endon 98.9 2.7E-10 9.3E-15 98.2 3.2 67 14-86 170-236 (305)
10 4fz2_A TRNA intron endonucleas 98.9 5.4E-10 1.9E-14 99.2 3.2 71 15-87 30-100 (395)
11 1r0v_A ENDA, tRNA-intron endon 98.7 4.3E-10 1.5E-14 96.9 -2.4 65 14-86 19-83 (305)
12 4fz2_A TRNA intron endonucleas 98.6 1E-08 3.6E-13 91.0 3.5 61 20-86 166-226 (395)
13 2ohc_A TRNA-splicing endonucle 97.5 1.7E-05 5.9E-10 67.8 1.0 47 13-87 173-220 (289)
14 2zyz_A Putative uncharacterize 92.8 0.016 5.4E-07 43.3 -0.5 21 65-85 21-41 (116)
15 2p5k_A Arginine repressor; DNA 40.2 9.3 0.00032 23.5 0.9 34 47-82 18-51 (64)
16 1w4t_A Arylamine N-acetyltrans 31.1 11 0.00038 31.5 0.2 42 45-86 71-114 (299)
17 2ija_A Arylamine N-acetyltrans 29.5 12 0.0004 31.1 0.1 42 45-86 51-94 (295)
18 3l48_A Outer membrane usher pr 27.5 42 0.0014 23.2 2.8 36 2-45 26-62 (94)
19 1w5r_A Arylamine N-acetyltrans 27.1 13 0.00043 30.7 -0.1 42 45-86 50-94 (278)
20 2bsz_A Arylamine N-acetyltrans 27.1 13 0.00043 30.8 -0.1 43 45-87 51-95 (278)
21 3d9w_A Putative acetyltransfer 26.1 15 0.00053 30.5 0.2 43 45-87 60-104 (293)
22 2vfb_A Arylamine N-acetyltrans 25.7 14 0.00047 30.5 -0.1 42 45-86 47-91 (280)
23 3bl4_A Uncharacterized protein 23.5 18 0.00061 26.6 0.1 51 30-80 13-63 (124)
24 3lnb_A N-acetyltransferase fam 22.6 18 0.00061 30.6 -0.0 42 46-87 78-121 (309)
25 3p9y_A CG14216, LD40846P; phos 22.3 58 0.002 26.1 2.9 16 74-89 28-43 (198)
26 2xtc_A F-box-like/WD repeat-co 21.7 9.2 0.00031 27.0 -1.7 18 68-85 8-25 (90)
27 1e2t_A NAT, N-hydroxyarylamine 21.2 13 0.00043 30.8 -1.2 43 45-87 50-94 (284)
No 1
>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A
Probab=99.51 E-value=3e-15 Score=128.33 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=71.3
Q ss_pred cEEecccCcccc----ceeeEeCCeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhcc
Q 030702 2 AEVVEKKGKMWT----TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLK 77 (173)
Q Consensus 2 A~V~~~kG~~~~----~~G~~~~~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lk 77 (173)
..|++++|+++. +||+.+++.++|+|+||+||++||.|++. .+||++++++.+ ++.+|.||++||
T Consensus 11 ~~v~~~~~~~~~~~~y~~G~~~~~~l~L~p~Ea~YLl~rg~l~i~----~~~~~~~~~~~~-------~~~~y~VY~DLr 79 (289)
T 2ohc_A 11 FFIEDGKSKNYIIGKYKIGYLSGDNLILDPYECLYLYFKGRISFQ----NSDSFRDLFDTV-------TFDRYVAYEILK 79 (289)
T ss_dssp EEESTTCCHHHHHHHHCCCEEETTEEECCHHHHHHHHHTTCEEES----STTHHHHHHHHS-------CHHHHHHHHHHH
T ss_pred EEecCCCCCceEecceeeceEcCCEEEEcHHHHHHHHhcCCEEEe----cCCCHHHHHHhh-------hhhhEeehhhHH
Confidence 478999999999 99999999999999999999999999995 478999999877 599999999999
Q ss_pred ccCeEEEecCCCc
Q 030702 78 SLGYIVGRHGVPW 90 (173)
Q Consensus 78 r~GYiV~r~~~~~ 90 (173)
++||.|.+.+...
T Consensus 80 ~rG~~v~~~g~dF 92 (289)
T 2ohc_A 80 NKGYRVKEDSGLI 92 (289)
T ss_dssp TTTCEEEEETTEE
T ss_pred hCCceEeeCCccE
Confidence 9999999986433
No 2
>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans}
Probab=99.48 E-value=5.3e-15 Score=116.43 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=54.2
Q ss_pred eCCeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEec
Q 030702 19 RNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 19 ~~~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
.-..++|+||||+||+|+|+|+|. ++|.+||+|++++.+.+.+. .++.+|.||+|||++||+|+..
T Consensus 11 ~~e~L~Ls~~EA~YL~~~G~L~v~-~~~~~ls~~el~~~~~~~~~-~f~~~y~vY~dLr~rG~~vk~G 76 (154)
T 3iey_A 11 LVDDKELPLIEAYYLLDKGELEVY-EDDKKLSKEEFLKKCLTYDE-RFLIRYKAYKELRDKGYTLGTA 76 (154)
T ss_dssp ECC--CEEHHHHHHHHHHTSCCCC-SCCC----HHHHHHHHHHCT-THHHHHHHHHHHHHTTCEEEEE
T ss_pred ccceEEEcHHHHHHHHHCCCEEEE-ECCCcCCHHHHHHHHHhcCc-cHHHHHHHHHHHHHCCcEECCC
Confidence 346799999999999999999998 47899999999999997654 7899999999999999999876
No 3
>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=99.46 E-value=2.2e-14 Score=115.27 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=60.3
Q ss_pred CeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEec
Q 030702 21 GKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 21 ~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
..|+|+||||+||+|+|+|+|.+.+|.+||.+++++.+...++ .++.+|.||+|||++||+|+..
T Consensus 46 ~~L~Ls~eEa~yL~~~g~l~v~d~~~~~ls~~el~~~~~~~~~-~f~~~y~vy~~lr~~G~~v~~G 110 (183)
T 2zyz_B 46 APLILGLYEALYLAEKGRLKVMGEDGREVAPEELAALGRERMR-NFDEIYKIYKYFRDLGYVVKSG 110 (183)
T ss_dssp SCEEEEHHHHHHHHHTTSCEEECTTSCEECHHHHHHHHHHHST-THHHHHHHHHHHHHTTCEEEEC
T ss_pred ceEEeeHHHHHHHHHCCCEEEECCCCCcCCHHHHHHHHhhhcc-cHHHHHHHHHHHHHCCeEeccc
Confidence 6799999999999999999999877899999999999887554 7899999999999999999987
No 4
>1a79_A TRNA endonuclease; 2.28A {Methanocaldococcus jannaschii} SCOP: c.52.2.1 d.75.1.1
Probab=99.44 E-value=4.8e-14 Score=112.16 Aligned_cols=73 Identities=27% Similarity=0.363 Sum_probs=64.8
Q ss_pred cceeeEeCCeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEec
Q 030702 13 TTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 13 ~~~G~~~~~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
.-+|+..+..+.|+||||+||+++|.|+|.+.+..+||.+++++.+...+. .++.+|.||+|||++||+|+..
T Consensus 25 ~~yG~~~~~~L~Ls~~Ea~yL~~~g~l~v~~~~~~~l~~~el~~~~~~~~~-~f~~~y~VY~dLr~rG~~v~~G 97 (171)
T 1a79_A 25 RHYGNVEGNFLSLSLVEALYLINLGWLEVKYKDNKPLSFEELYEYARNVEE-RLCLKYLVYKDLRTRGYIVKTG 97 (171)
T ss_dssp TTCSEECSSCEEEEHHHHHHHHHHTCEEEECSSSSCCCHHHHHHHHHHHCT-THHHHHHHHHHHHHTTCEEEEC
T ss_pred CcCceEcCCeEEEeHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHhccc-cHHHHhHHHHHHHHCCeEeccc
Confidence 467888889999999999999999999999654455999999999987554 5899999999999999999986
No 5
>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}
Probab=99.39 E-value=1e-13 Score=111.12 Aligned_cols=65 Identities=25% Similarity=0.394 Sum_probs=59.1
Q ss_pred CCeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEec
Q 030702 20 NGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 20 ~~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
+..|+|+||||+||+|+|+|.|.+ +|.+||.+++++.+...++ .++.+|.||+|||++||+|+..
T Consensus 43 ~~~L~Ls~eEA~yL~~~g~l~v~d-~~~~ls~~el~~~~~~~~~-~f~~~y~VY~~Lr~~G~~v~~G 107 (180)
T 2cv8_A 43 NSELILSLIEGVYLVKKGKLEIVS-NGERLDFERLYQIGVTQIP-RFRILYSVYEDLREKGYVVRSG 107 (180)
T ss_dssp -CCEEEEHHHHHHHHHTTSCEEEE-TTEEECHHHHHHHHHHHST-THHHHHHHHHHHHHTTCEEEEC
T ss_pred CceEEEeHHHHHHHHHCCCEEEee-CCCCCCHHHHHHHHhhhcc-cHHHHhHHHHHHHhCCeEeccc
Confidence 467999999999999999999984 6899999999999987664 7899999999999999999987
No 6
>3ajv_B TRNA-splicing endonuclease; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_B
Probab=99.32 E-value=5.3e-13 Score=107.63 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=57.5
Q ss_pred CeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEec
Q 030702 21 GKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 21 ~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
..|.|++|||+||+|+|+|+|.+.+|.+||.+++++. ...+ ..++.+|.||+|||++||+|+..
T Consensus 52 ~~L~Ls~~Ea~yL~~~g~l~v~~~~~~~ls~~el~~~-~~~~-~~f~~~y~VY~dLr~rG~~v~~G 115 (186)
T 3ajv_B 52 GPLRLSLIESLYLAEKGVLEVAKPDGSSVGVEDLRTA-VRGN-PRFSMLYNIYRDLRERGFVVRSG 115 (186)
T ss_dssp CCEEEEHHHHHHHHHTTSEEEECTTSCEECHHHHHHH-HHTS-HHHHHHHHHHHHHHHTTCEEEEC
T ss_pred ceEEEeHHHHHHHHHCCCEEEECCCCCcCCHHHHHHH-hhcc-chHHHHhhHHHHHHhCceEeccc
Confidence 6799999999999999999999777899999999999 3333 35899999999999999999887
No 7
>3iey_B NEQ261; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans} PDB: 3if0_X
Probab=99.26 E-value=1.7e-13 Score=107.74 Aligned_cols=73 Identities=22% Similarity=0.183 Sum_probs=65.0
Q ss_pred ceeeEeCCeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEecCCCc
Q 030702 14 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPW 90 (173)
Q Consensus 14 ~~G~~~~~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~~~~~ 90 (173)
-+|+..++.|.|+|+||+||+ +|+|++. +|.+||++++.+.+...+. .++.+|.||+|||++||+|+..+..+
T Consensus 12 ~~G~~~~~~L~Ls~~EA~yL~-~g~l~v~--~~~~l~~~~l~~~~~~~~~-~F~~~y~VY~dLR~rG~~vk~GG~DF 84 (153)
T 3iey_B 12 YLGYNMGNYIKISEPELLFVL-RNKPQIK--DRLKLDEKTIIKEGVKKYK-NFWEIYYTVKDLILRGYRVRFDGFFI 84 (153)
T ss_dssp TCSEECSSSEECCHHHHHHHH-HHCTHHH--HHHTCCHHHHHHHHHHHCT-THHHHHHHHHHHHHTTCEEEECSSSE
T ss_pred eeeeEcCCEEEECHHHHHHHh-cCCEEec--cCCcCCHHHHHHHHHhcCc-chhhhhHHHHHHHHCCCEEeeCCCeE
Confidence 479999999999999999999 9999984 5789999999999986553 68999999999999999999985444
No 8
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A
Probab=99.11 E-value=1.7e-11 Score=99.41 Aligned_cols=66 Identities=24% Similarity=0.184 Sum_probs=57.3
Q ss_pred ceeeEeCCeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEecC
Q 030702 14 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHG 87 (173)
Q Consensus 14 ~~G~~~~~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~~ 87 (173)
.+|..+++. |+|+||+||+++|.|++ +..+|++++++.+.. . +.+..+|.||+|||++||+|+...
T Consensus 58 ~yG~~~~~~--Ls~vEAlYL~~~G~L~v----~~~~~~~eL~~~~~~-~-~~f~~kY~VYkDLR~RGy~Vk~G~ 123 (190)
T 3ajv_A 58 RIGYLRKGR--LEPLEAAYQASRGMLCM----GETRGWAAAVEVIAG-L-GLSLDTALVYFDLRRKGRKPLVGV 123 (190)
T ss_dssp HHTSEETTE--ECHHHHHHHHHHTCEEE----TTBCHHHHHHHHHHH-T-TCCHHHHHHHHHHHHTTCCCEECS
T ss_pred ccccccCCe--ECHHHHHHHHhcCcEee----cCCCCHHHHHHHHhh-C-CCcceEEEeHHHHHhCCCEEeecC
Confidence 478877777 99999999999999987 357899999999876 3 367899999999999999999874
No 9
>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A
Probab=98.94 E-value=2.7e-10 Score=98.21 Aligned_cols=67 Identities=30% Similarity=0.439 Sum_probs=58.9
Q ss_pred ceeeEeCCeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEec
Q 030702 14 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 14 ~~G~~~~~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
-+|+..++.|.|+++||+||+++|+|+|. ..| .+++.+.+...+. .++.+|.||+|||++||+|+..
T Consensus 170 ~yG~~~~~~L~Lsl~EA~yL~~~g~L~v~-~~~----~~el~~~~~~~~~-~f~~~y~VY~dLR~rG~vvk~G 236 (305)
T 1r0v_A 170 FYGSEKGDLVTLSLIESLYLLDLGKLNLL-NAD----REELVKRAREVER-NFDRRYEVYRNLKERGFVVKTG 236 (305)
T ss_dssp CCSEEETTEEEECHHHHHHHHHHTCEEET-TCC----HHHHHHHHHHHST-THHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCcccCCeeEEcHHHHHHHHhcCcEEEe-cCC----HHHHHHHHhhcCc-chhhhhhHHHHHHHCCCEeccC
Confidence 57888889999999999999999999996 333 3999999887554 6899999999999999999987
No 10
>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}
Probab=98.89 E-value=5.4e-10 Score=99.20 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=64.0
Q ss_pred eeeEeCCeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEecC
Q 030702 15 TGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHG 87 (173)
Q Consensus 15 ~G~~~~~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~~ 87 (173)
+|+..++++.|++.||+||+++|.+...+.+|..+|++++.+.+..+. .++.+|.||++||.+||+|++..
T Consensus 30 FGrp~g~~L~LS~~EAaYLl~~~krl~vd~~gk~ls~eelle~~~~~r--~f~~kylVYkDLReRG~~Vk~~g 100 (395)
T 4fz2_A 30 FGEYRAGKLMLEVEEGLYLVDVRKAACTDENSKPVSFNDIAGVFIKRK--KLMARYFTFKDWRDRGLIIKSPG 100 (395)
T ss_dssp CSEEETTEEEECHHHHHHHHHHSCCEEECTTSCBCCHHHHHHHTTTST--THHHHHHHHHHHHHTTCCEESCC
T ss_pred CCCccCCceEEEehhhhHHHHhCCeeeeccCCCcCCHHHHHHHHHhch--hHHHHHHHHHHHHhcCccccccc
Confidence 799999999999999999999998887788899999999998877643 47899999999999999999754
No 11
>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A
Probab=98.74 E-value=4.3e-10 Score=96.93 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=20.7
Q ss_pred ceeeEeCCeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEec
Q 030702 14 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 14 ~~G~~~~~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
-+|+..++.+.|+|+||+||+++|. ++. ++ | +++++.+...+. .++.+|.||+|||++||.|+..
T Consensus 19 ~yG~~~~~~l~L~~~Ea~YL~~~~~-~i~--~~--~--~~l~~~~~~~~~-~~~~~y~VY~DLR~RGy~v~~g 83 (305)
T 1r0v_A 19 GFGVKRGDKIYLHPLEVVYLQIKGI-ESF--GE--L--EDVLSWAESRME-DFSTYYFVYEDLRDRGNKVKIQ 83 (305)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCcccCCEEEEeHHHHHHHHHcCC-chH--hh--H--HHHHHHHHhccc-chhhheehHHHHHhCCcEeeeC
Confidence 5788899999999999999999999 886 23 3 899988865443 6899999999999999999887
No 12
>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}
Probab=98.65 E-value=1e-08 Score=90.99 Aligned_cols=61 Identities=23% Similarity=0.426 Sum_probs=54.4
Q ss_pred CCeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEec
Q 030702 20 NGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 20 ~~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
.+.+.|+++||+||+|+|.|++. .+|.+++.+.+...+. .+..+|.||+|||.+||+|+..
T Consensus 166 ~~~LqLSlvEA~YL~~~G~L~V~-----~~s~~el~~~~~~~~~-~F~~kY~VY~dLR~rG~vvksG 226 (395)
T 4fz2_A 166 GNLNKLDIYETLFLIDMGVISIK-----NFTRAQIVNIASARRT-DIMKLYDVYKDWRTKGYVVKTG 226 (395)
T ss_dssp CCCEEECHHHHHHHHHTTCEEES-----SCCHHHHHHHHHHHCT-THHHHHHHHHHHHTTTCEEEEE
T ss_pred CcceeecHHHHHHHHhCCCEEee-----cCCHHHHHHHHhhcch-hhhhhhHHHHHHHHCCCEeCcC
Confidence 45789999999999999999995 3899999999987664 6889999999999999999854
No 13
>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A
Probab=97.54 E-value=1.7e-05 Score=67.80 Aligned_cols=47 Identities=19% Similarity=0.068 Sum_probs=36.7
Q ss_pred cceeeEeC-CeEEEeHHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccCeEEEecC
Q 030702 13 TTTGIVRN-GKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHG 87 (173)
Q Consensus 13 ~~~G~~~~-~~l~L~peEalYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYiV~r~~ 87 (173)
.-+|+..+ ++| |+++||+||++ ...+. . . |.||+|||++||+|+..-
T Consensus 173 ~~yG~~~~~~~L-Lsl~Ea~yL~~-----------------------~~~~~-~-f--y~VY~dLR~rG~vvk~G~ 220 (289)
T 2ohc_A 173 WWIGTAFHGFRL-LTENEANYISG-----------------------NHSAS-Q-V--DMVYSDLVGRGCIVKTGF 220 (289)
T ss_dssp TTSSEEETTEEE-ECHHHHHHHTT-----------------------CTTSS-H-H--HHHHHHHHHTTCEEEECG
T ss_pred hhcCCcCCCccc-CCHHHHHHHhh-----------------------cccch-h-H--HHHHHHHHHCCCEEcccc
Confidence 45788866 789 99999999999 11111 1 2 999999999999998763
No 14
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=92.80 E-value=0.016 Score=43.26 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.1
Q ss_pred CCcceeeeehhccccCeEEEe
Q 030702 65 CSWELFEVYRHLKSLGYIVGR 85 (173)
Q Consensus 65 ~~~~~Y~VY~~Lkr~GYiV~r 85 (173)
....+|.||++||++||+|+.
T Consensus 21 ~~~l~y~VYkDLR~RG~~vk~ 41 (116)
T 2zyz_A 21 MDVLQEQVFKDLKSRGFKIIE 41 (116)
T ss_dssp CCHHHHHHHHHHHTTTCEEEE
T ss_pred ccceeeHHHHHHHHCCCcccE
Confidence 457789999999999999999
No 15
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=40.23 E-value=9.3 Score=23.46 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=27.0
Q ss_pred cccCHHHHHHHHHccCCCCCcceeeeehhccccCeE
Q 030702 47 LCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYI 82 (173)
Q Consensus 47 ~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~GYi 82 (173)
.++|.+|+++.+.... .....=.||++|+.+|.+
T Consensus 18 ~~~t~~el~~~l~~~~--~~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 18 EIETQDELVDMLKQDG--YKVTQATVSRDIKELHLV 51 (64)
T ss_dssp CCCSHHHHHHHHHHTT--CCCCHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHhC--CCcCHHHHHHHHHHcCCE
Confidence 4799999999997543 235555799999999987
No 16
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=31.12 E-value=11 Score=31.53 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=33.3
Q ss_pred CCcccCHHHHHHHHHc-cCCC-CCcceeeeehhccccCeEEEec
Q 030702 45 NDLCLPLKEIYEKIAN-EKSG-CSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 45 ~g~~lSlq~~y~l~~~-~~~~-~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
..+.|+++++|+.+.. ..+| |..-.-+-|.-|+.+||-|...
T Consensus 71 ~~i~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~l 114 (299)
T 1w4t_A 71 RPIEIDADKVFAKVVEGSRGGYCFELNSLFARLLLALGYELELL 114 (299)
T ss_dssp CCCCCSHHHHHHHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCCcchHhHHHHHHHHHHHcCCeEEEE
Confidence 4678999999999983 3334 5666777788999999999885
No 17
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=29.47 E-value=12 Score=31.12 Aligned_cols=42 Identities=19% Similarity=0.440 Sum_probs=32.9
Q ss_pred CCcccCHHHHHHHHHc-cCCC-CCcceeeeehhccccCeEEEec
Q 030702 45 NDLCLPLKEIYEKIAN-EKSG-CSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 45 ~g~~lSlq~~y~l~~~-~~~~-~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
..+.|+++++|+.+.. ..+| |..-.-+-|.-|+.+||-|...
T Consensus 51 ~~i~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~ 94 (295)
T 2ija_A 51 DAMDLGLEAIFDQVVRRNRGGWCLQVNHLLYWALTTIGFETTML 94 (295)
T ss_dssp CCCCCSHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCHHHHHHHHhcCCCcEEhHHHHHHHHHHHHHcCCcEEEE
Confidence 3578999999999873 3444 5666677788999999999875
No 18
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=27.54 E-value=42 Score=23.25 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=26.7
Q ss_pred cEEecccCccccceeeE-eCCeEEEeHHHHHHHHhcCcEEEEcCC
Q 030702 2 AEVVEKKGKMWTTTGIV-RNGKTYCSIEETLFLAEIGALYLLDNN 45 (173)
Q Consensus 2 A~V~~~kG~~~~~~G~~-~~~~l~L~peEalYL~ErG~L~~~~~~ 45 (173)
|.|.+.+|+ ..|.+ .+|.+||.-. -+.|.|.|.|.+
T Consensus 26 A~V~d~~g~---~~giVG~~G~vyl~gl-----~~~g~L~V~Wg~ 62 (94)
T 3l48_A 26 ASVTSEKGR---ELGMVADEGLAWLSGV-----TPGETLSVNWDG 62 (94)
T ss_dssp CEEECTTCC---EEEEBCGGGEEEESSC-----CTTCEEEEECSS
T ss_pred cEEEcCCCc---eEEEECCCCEEEEECC-----CCCCEEEEEECC
Confidence 566666664 46777 7788999874 579999998754
No 19
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=27.09 E-value=13 Score=30.74 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=32.7
Q ss_pred CCc-ccCHHHHHHHHHc-cCCC-CCcceeeeehhccccCeEEEec
Q 030702 45 NDL-CLPLKEIYEKIAN-EKSG-CSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 45 ~g~-~lSlq~~y~l~~~-~~~~-~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
..+ .|+++++|+.+.. ..+| |..-.-+-|.-|+.+||-|...
T Consensus 50 ~~i~~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~ 94 (278)
T 1w5r_A 50 IPVADLSAEALFAKLVDRRRGGYQYEHNGLLGYVLEELGFEVERL 94 (278)
T ss_dssp CCCCCCSHHHHHHHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCceehHHHHHHHHHHHHHcCCeEEEE
Confidence 356 7899999999873 3444 5666677788999999999885
No 20
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=27.07 E-value=13 Score=30.77 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=33.5
Q ss_pred CCcccCHHHHHHHHHc-cCCC-CCcceeeeehhccccCeEEEecC
Q 030702 45 NDLCLPLKEIYEKIAN-EKSG-CSWELFEVYRHLKSLGYIVGRHG 87 (173)
Q Consensus 45 ~g~~lSlq~~y~l~~~-~~~~-~~~~~Y~VY~~Lkr~GYiV~r~~ 87 (173)
..+.|+++++|+.+.. ..+| |..-.-+-|.-|+.+||-|....
T Consensus 51 ~~i~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 95 (278)
T 2bsz_A 51 RPVRLDLAALQDKIVLGGRGGYCFEHNLLFMHALKALGFEVGGLA 95 (278)
T ss_dssp CCCCCSHHHHHHHHTTSCCCBCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHHHHHHHhCCCCeehHHHHHHHHHHHHHCCCeEEEEE
Confidence 4678999999999874 3344 56666777889999999998853
No 21
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=26.08 E-value=15 Score=30.50 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=34.0
Q ss_pred CCcccCHHHHHHHHHc-cCCC-CCcceeeeehhccccCeEEEecC
Q 030702 45 NDLCLPLKEIYEKIAN-EKSG-CSWELFEVYRHLKSLGYIVGRHG 87 (173)
Q Consensus 45 ~g~~lSlq~~y~l~~~-~~~~-~~~~~Y~VY~~Lkr~GYiV~r~~ 87 (173)
..+.|+++++|+.+.. ..+| |..-.-+-+.-|+.+||-|....
T Consensus 60 ~~i~Ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 104 (293)
T 3d9w_A 60 RPVRLDLATLQDKLVHSRRGGYCYENAGLFAAALERLGFGVTGHT 104 (293)
T ss_dssp CCCCCSHHHHHHHHTSSSCCBCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCHHHHHHHHHHcCCCcChHHHHHHHHHHHHHcCCeEEEEE
Confidence 3567999999998874 3334 67777888999999999998763
No 22
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=25.67 E-value=14 Score=30.52 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=32.6
Q ss_pred CCc-ccCHHHHHHHHHc-cCCC-CCcceeeeehhccccCeEEEec
Q 030702 45 NDL-CLPLKEIYEKIAN-EKSG-CSWELFEVYRHLKSLGYIVGRH 86 (173)
Q Consensus 45 ~g~-~lSlq~~y~l~~~-~~~~-~~~~~Y~VY~~Lkr~GYiV~r~ 86 (173)
..+ .|+++++|+.+.. ..+| |..-.-+-|.-|+.+||-|...
T Consensus 47 ~~i~~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~ 91 (280)
T 2vfb_A 47 VPVDDLSAEALADKLVDRRRGGYCYEHNGLIGYVLAELGYRVRRL 91 (280)
T ss_dssp CCCCCCSHHHHHHHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCceEhHHHHHHHHHHHHHCCCeEEEE
Confidence 356 7899999999873 3344 5666677788999999999885
No 23
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=23.45 E-value=18 Score=26.55 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=35.7
Q ss_pred HHHHHhcCcEEEEcCCCcccCHHHHHHHHHccCCCCCcceeeeehhccccC
Q 030702 30 TLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLG 80 (173)
Q Consensus 30 alYL~ErG~L~~~~~~g~~lSlq~~y~l~~~~~~~~~~~~Y~VY~~Lkr~G 80 (173)
++++.|.|.|.+.+..+.+++++++-+.+..-..-.--..|.|..++++.+
T Consensus 13 ~~~~~~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~~ 63 (124)
T 3bl4_A 13 GLTLGGDGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATTA 63 (124)
T ss_dssp TEEECTTSCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSST
T ss_pred eEEEcCCCEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEccccc
Confidence 356678899999877777899999887765321100134689999888764
No 24
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=22.63 E-value=18 Score=30.58 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=33.8
Q ss_pred CcccCHHHHHHHHHc-cCCC-CCcceeeeehhccccCeEEEecC
Q 030702 46 DLCLPLKEIYEKIAN-EKSG-CSWELFEVYRHLKSLGYIVGRHG 87 (173)
Q Consensus 46 g~~lSlq~~y~l~~~-~~~~-~~~~~Y~VY~~Lkr~GYiV~r~~ 87 (173)
...|+++++|+.+.. ..+| |..-..+-+.-|+.+||-|....
T Consensus 78 ~~~ld~~~l~~KiV~~~RGGyC~ElN~lf~~~L~~lGf~v~~~~ 121 (309)
T 3lnb_A 78 IKNISKNNLVEKLLIQKRGGLCYELNSLLYYFLMDCGFQVYKVA 121 (309)
T ss_dssp CCCCCHHHHHHHHTTTCCCBCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHHcCCeEEEEe
Confidence 467999999999873 3333 67778888999999999998774
No 25
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=22.32 E-value=58 Score=26.09 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.4
Q ss_pred hhccccCeEEEecCCC
Q 030702 74 RHLKSLGYIVGRHGVP 89 (173)
Q Consensus 74 ~~Lkr~GYiV~r~~~~ 89 (173)
+-|++.||-|.+++..
T Consensus 28 ~~L~k~G~~V~SfGTG 43 (198)
T 3p9y_A 28 NFLAKKGFNVRSYGTG 43 (198)
T ss_dssp HHHHHTTCEEEEEECS
T ss_pred HHHHhCCCceeecCCC
Confidence 4688999999999864
No 26
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=21.74 E-value=9.2 Score=27.04 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=14.8
Q ss_pred ceeeeehhccccCeEEEe
Q 030702 68 ELFEVYRHLKSLGYIVGR 85 (173)
Q Consensus 68 ~~Y~VY~~Lkr~GYiV~r 85 (173)
-.|+||+||.+.||.---
T Consensus 8 vN~LI~RYLqEsGf~hsA 25 (90)
T 2xtc_A 8 VNFLVYRYLQESGFSHSA 25 (90)
T ss_dssp HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHH
Confidence 469999999999997533
No 27
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=21.17 E-value=13 Score=30.81 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCcccCHHHHHHHHHc-cCCC-CCcceeeeehhccccCeEEEecC
Q 030702 45 NDLCLPLKEIYEKIAN-EKSG-CSWELFEVYRHLKSLGYIVGRHG 87 (173)
Q Consensus 45 ~g~~lSlq~~y~l~~~-~~~~-~~~~~Y~VY~~Lkr~GYiV~r~~ 87 (173)
..+.|+++++|+.+.. ..+| |..-.-+-|.-|+.+||-|....
T Consensus 50 ~~i~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 94 (284)
T 1e2t_A 50 REIQLDETALEEKLLYARRGGYCFELNGLFERALRDIGFNVRSLL 94 (284)
T ss_dssp CCCCCSTTHHHHHHTTTCCCBCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHhcCCCcEEhHHHHHHHHHHHHHCCCeEEEEE
Confidence 4678999999999873 3344 56666777889999999998853
Done!