BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030703
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 249 bits (636), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 143/176 (81%), Gaps = 6/176 (3%)
Query: 4 TTDPLAVGRVVGDVVDTFIPSVKMNVIYNSN---KQVANGHELMPAVIIAKPRVDIGGED 60
++DPL +GRV+GDVVD F +VKM+VIYNSN K V NGHEL P+ + + PRV++ G D
Sbjct: 6 SSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGD 65
Query: 61 MRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRY 120
MRS +TLIMTDPD P PSDP LREHLHW+VTDIPGTTD+SFGKE+VSYE P+P +GIHR+
Sbjct: 66 MRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRF 125
Query: 121 VFILFKQ--RGRQTVRPP-ASRDHFNTRQFSAENGLGLPVAAVYFNAQRETAARRR 173
VF+LFKQ RG+ + PP RD FNTR+F+ EN LGLPVAAV+FN QRETAARRR
Sbjct: 126 VFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 244 bits (624), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 113/173 (65%), Positives = 143/173 (82%), Gaps = 2/173 (1%)
Query: 2 SRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDM 61
+R +PL +GRVVGDV+D F P+ KMNV YN KQV+NGHEL P+ + +KPRV+I G D+
Sbjct: 9 TRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNK-KQVSNGHELFPSSVSSKPRVEIHGGDL 67
Query: 62 RSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYV 121
RS +TL+M DPD P PSDP L+EHLHW+VT+IPGTTDA+FGKE+VSYE P+P +GIHR+V
Sbjct: 68 RSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFV 127
Query: 122 FILFKQRGRQTVRPPA-SRDHFNTRQFSAENGLGLPVAAVYFNAQRETAARRR 173
F+LF+Q+ R+ + P SRDHFNTR+F+ E LGLPVAAV+FNAQRETAAR+R
Sbjct: 128 FVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 180
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 223 bits (568), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 104/165 (63%), Positives = 130/165 (78%), Gaps = 1/165 (0%)
Query: 3 RTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMR 62
R DPL VGRVVGDV+D F+ S + V Y S K V+NG EL P+++ +PRV++GG DMR
Sbjct: 6 RDRDPLVVGRVVGDVLDAFVRSTNLKVTYGS-KTVSNGLELKPSMVTHQPRVEVGGNDMR 64
Query: 63 SAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVF 122
+ YTL+M DPDAPSPSDP LRE+LHW+VTDIPGTT ASFG+E++SYE+P+P +GIHR VF
Sbjct: 65 TFYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVF 124
Query: 123 ILFKQRGRQTVRPPASRDHFNTRQFSAENGLGLPVAAVYFNAQRE 167
+LF+Q GRQTV P R +FNT+ F+ LG PVAAVYFN+QRE
Sbjct: 125 VLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 208 bits (530), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/163 (60%), Positives = 122/163 (74%), Gaps = 1/163 (0%)
Query: 6 DPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAY 65
DPL V RVVGDV+D F S+ + V Y ++V NG L P+ + KPRV+IGGED+R+ Y
Sbjct: 10 DPLIVSRVVGDVLDPFNRSITLKVTY-GQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFY 68
Query: 66 TLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILF 125
TL+M DPD PSPS+P LRE+LHW+VTDIP TT +FG EIVSYE P P GIHR VFILF
Sbjct: 69 TLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFILF 128
Query: 126 KQRGRQTVRPPASRDHFNTRQFSAENGLGLPVAAVYFNAQRET 168
+Q GRQTV P R +FNTR+F+ LGLPVAAV++N+QRE+
Sbjct: 129 RQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 171
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 13 VVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRS-AYTLIMTD 71
+V DV+D +P+ + VIY + +V G+EL P + +P V G + +S TL+M D
Sbjct: 4 IVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVD 62
Query: 72 PDAPSPSDPCLREHLHWMVTDIPGTTDA-SFGKEIVSY--ETPKPVVGIHRYVFILFKQR 128
PDAP+ DP RE LHW V +IPG+ + S G + Y P G+HRY+F+L++Q
Sbjct: 63 PDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQE 122
Query: 129 GRQTVRPPAS------RDHFNTRQFSAENGLGLPVAAVYFNAQRE 167
+ P S R +FN R F+A++GLG P+AA Y+ AQ +
Sbjct: 123 NKIEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYD 167
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 1 MSRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKP-RVDIGGE 59
MS T PL++ V P + V Y + G L P + +P + G
Sbjct: 1 MSMWTGPLSLHEVDEQ------PQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGL 54
Query: 60 DMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSY--ETPKPVVGI 117
D YTLI+TDPDAPS P RE H++V ++ G D S G + Y P G+
Sbjct: 55 DPGKLYTLILTDPDAPSRKKPVYREWHHFLVVNMKG-NDISSGNVLSDYVGSGPPKGTGL 113
Query: 118 HRYVFILFKQ----RGRQTVRPPASRDH---FNTRQFSAENGLGLPVAAVYFNAQRET 168
HRYV+++++Q R + + S DH F T F + LG PVA + A+ ++
Sbjct: 114 HRYVWLVYQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDS 171
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 40 GHELMPAVIIAKPR-VDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTD 98
G L P ++ +P + G D YTL++TDPDAPS DP RE H++V ++ G D
Sbjct: 38 GKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKG-ND 96
Query: 99 ASFGKEIVSY--ETPKPVVGIHRYVFILFKQRGRQTVRPPA-------SRDHFNTRQFSA 149
S G + Y P G+HRYV+++++Q P +R F +F
Sbjct: 97 ISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVEEFRK 156
Query: 150 ENGLGLPVAAVYFNAQRETA 169
+ LG PVA F A+ + +
Sbjct: 157 KYHLGAPVAGTCFQAEWDDS 176
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 40 GHELMPAVIIAKPR-VDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTD 98
G L P ++ +P + G D YTL++TDPDAPS DP RE H++V ++ G D
Sbjct: 41 GKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKG-ND 99
Query: 99 ASFGKEIVSY--ETPKPVVGIHRYVFILFKQRGRQTVRPPA-------SRDHFNTRQFSA 149
S G + Y P G+HRYV+++++Q P +R F F
Sbjct: 100 ISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRK 159
Query: 150 ENGLGLPVAAVYFNAQRETA 169
+ LG PVA F A+ + +
Sbjct: 160 KYHLGAPVAGTCFQAEWDDS 179
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 1 MSRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKP-RVDIGGE 59
+S+ + PL++ V P + V Y + G L P + +P + G
Sbjct: 4 LSKWSGPLSLQEV------DERPQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGL 57
Query: 60 DMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSY--ETPKPVVGI 117
D YTL++TDPDAPS DP RE H++V ++ G + S G + Y P G+
Sbjct: 58 DPGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-NNISSGTVLSDYVGSGPPKGTGL 116
Query: 118 HRYVFILFKQRGRQTVRPPA----SRDH---FNTRQFSAENGLGLPVAAVYFNAQRE 167
HRYV+++++Q G P S DH F F + LG PVA + A+ +
Sbjct: 117 HRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWD 173
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 1 MSRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKP-RVDIGGE 59
+S+ + PL++ V P + V Y + G L P + +P + G
Sbjct: 4 LSKWSGPLSLQEV------DERPQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGL 57
Query: 60 DMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSY--ETPKPVVGI 117
D YTL++TDPDAPS DP RE H++V ++ G + S G + Y P G+
Sbjct: 58 DPGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-NNISSGTVLSDYVGSGPPKGTGL 116
Query: 118 HRYVFILFKQRGRQTVRPPA----SRDH---FNTRQFSAENGLGLPVAAVYFNAQRE 167
HRYV+++++Q G P S DH F F + LG PVA + A+ +
Sbjct: 117 HRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWD 173
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 1 MSRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKP-RVDIGGE 59
+S+ + PL++ V P ++V Y G L P + +P + G
Sbjct: 5 LSKWSGPLSLQEV------DEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGL 58
Query: 60 DMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSY--ETPKPVVGI 117
D YTL++TDPDAPS DP RE H++V ++ G D S G + Y P G+
Sbjct: 59 DSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPKGTGL 117
Query: 118 HRYVFILFKQ----RGRQTVRPPASRDH---FNTRQFSAENGLGLPVAAVYFNAQRE 167
HRYV+++++Q + + + S DH F F + L PVA + A+ +
Sbjct: 118 HRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWD 174
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 47/199 (23%)
Query: 13 VVGDVVD--TFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIG-GEDMRSA----- 64
++ DV+ +F PS + V Y+S+ VA G+ L +KP+ + M+ +
Sbjct: 21 ILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQAN 80
Query: 65 ---------YTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDAS---------FGKE-- 104
+TL+MTDPDAPS +D E H + D+ +A+ F E
Sbjct: 81 AYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFN 140
Query: 105 ------IVSYETPKPVVGI--HRYVFILFKQ-RGRQTVRPPASRDHFN---------TRQ 146
++ Y P P G HRYVF+L+KQ +G + + +D N +
Sbjct: 141 TKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGK 200
Query: 147 FSAENGLGLPVAAVYFNAQ 165
++ EN L L VA+ +F A+
Sbjct: 201 WAKENNLQL-VASNFFYAE 218
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 24 SVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYT--LIMTDPDAPSPSDPC 81
+V + + + + K+V +G+ L A + PR E+ Y L M DPD PS P
Sbjct: 43 NVDLFISFKAGKEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRPD 102
Query: 82 LREHLHWMVTDIPGTTDASFGKE-----IVSYETP--KPVVGIHRYVFI--LFKQRGRQT 132
+E++HW+V+ I T + G + I+ Y P K G+HR FI L K+ +
Sbjct: 103 GKEYIHWVVSGIK-TKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFIISLIKEEDKDN 161
Query: 133 V 133
+
Sbjct: 162 I 162
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 24 SVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGED--MRSAYTLIMTDPDAPSPSDPC 81
+V + + S K+V +G+ L A + PR E+ Y L DPD PS P
Sbjct: 36 TVDXYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFXIDPDFPSRRRPD 95
Query: 82 LREHLHWMVTDI------PGTTDASFGKEIVSYETP--KPVVGIHRYVFILF----KQRG 129
R+++HW V+ I GT ++ Y P K G+HR FIL + +G
Sbjct: 96 GRDYVHWAVSGIKSKELVKGTDKNCI--TLLPYVGPSIKKGTGLHRISFILSLVKEENKG 153
Query: 130 RQTVRPPASRDHFNTR 145
T P +H+ TR
Sbjct: 154 NVTGVPLYRGEHYITR 169
>pdb|4F7C|A Chain A, Crystal Structure Of Bovine Cd1d With Bound
C12-Di-Sulfatide
pdb|4F7C|C Chain C, Crystal Structure Of Bovine Cd1d With Bound
C12-Di-Sulfatide
pdb|4F7E|A Chain A, Crystal Structure Of Bovine Cd1d With Bound
C16:0-Alpha-Galactosyl Ceramide
Length = 283
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 26 KMNVIYNSNKQVANGHELMPAVIIAK-PRVDIGGEDMRSAYTL-IMTDPDAPS------- 76
K++V Y Q+A G EL+P I R G D+ S + ++ PDAP
Sbjct: 87 KLHVEYPLEIQIATGCELLPRNISESFLRAAFQGRDVLSFQGMSWVSAPDAPPFIQEVIK 146
Query: 77 --PSDPCLREHLHWMVTDI 93
+ +E +HW++ DI
Sbjct: 147 VLNQNQGTKETVHWLLHDI 165
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 6 DPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAK--PRVDIGGEDMRS 63
DP+ VGR+ GD S+ + + +S+K V NG + P AK R D + S
Sbjct: 95 DPMTVGRIEGDC-----ESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIHSGLYS 149
Query: 64 AYTL 67
++TL
Sbjct: 150 SFTL 153
>pdb|2DVY|A Chain A, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|B Chain B, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|C Chain C, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|D Chain D, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|E Chain E, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|F Chain F, Crystal Structure Of Restriction Endonucleases Pabi
Length = 226
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 127 QRGRQTVRPPASRDHFNTRQFSAENGLGLPVA 158
+ G+ VR P +R R ENG+G+PV+
Sbjct: 14 ENGKIVVRLPITRPTSKIRVKKIENGVGIPVS 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,341,083
Number of Sequences: 62578
Number of extensions: 221670
Number of successful extensions: 389
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 17
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)