Query 030703
Match_columns 173
No_of_seqs 137 out of 1380
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00169 CETS family protein; 100.0 4.4E-54 9.6E-59 330.3 14.7 172 1-173 2-173 (175)
2 KOG3346 Phosphatidylethanolami 100.0 4.8E-53 1E-57 324.5 12.5 173 1-173 1-178 (185)
3 cd00866 PEBP_euk PhosphatidylE 100.0 4.2E-39 9.1E-44 242.9 13.2 139 26-164 2-154 (154)
4 PF01161 PBP: Phosphatidyletha 100.0 7E-30 1.5E-34 190.9 9.5 130 25-163 2-146 (146)
5 cd00457 PEBP PhosphatidylEthan 99.9 2.7E-25 5.9E-30 168.8 9.9 122 36-163 6-158 (159)
6 cd00865 PEBP_bact_arch Phospha 99.8 3.3E-18 7.2E-23 128.7 9.6 94 49-152 25-137 (150)
7 PRK10257 putative kinase inhib 99.7 6.7E-18 1.5E-22 127.9 8.8 80 50-134 30-131 (158)
8 PRK09818 putative kinase inhib 99.7 3E-17 6.5E-22 127.0 10.1 95 35-134 27-154 (183)
9 TIGR00481 Raf kinase inhibitor 99.7 4.9E-17 1.1E-21 121.2 9.8 93 50-152 14-128 (141)
10 COG1881 Phospholipid-binding p 99.7 5.7E-17 1.2E-21 124.4 7.6 114 35-154 28-163 (174)
11 KOG3586 TBX1 and related T-box 42.3 29 0.00062 30.2 3.2 53 38-93 95-154 (437)
12 PF09671 Spore_GerQ: Spore coa 28.1 1.7E+02 0.0036 19.6 4.4 46 25-74 22-71 (81)
13 cd07927 RHD-n_NFAT_like N-term 24.6 2.8E+02 0.0061 21.1 5.6 66 22-96 8-73 (161)
14 PRK04243 50S ribosomal protein 23.3 69 0.0015 25.2 2.2 28 62-92 127-154 (196)
15 cd07884 RHD-n_Relish N-termina 22.2 2.6E+02 0.0057 21.2 5.1 65 22-91 8-75 (159)
No 1
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=4.4e-54 Score=330.27 Aligned_cols=172 Identities=60% Similarity=1.054 Sum_probs=161.2
Q ss_pred CCCCCCceeeeeeccccccccccceEEEEEEcCcccccccceeccceeccCCeeeeCCCCcceeEEEEEeCCCCCCCCCc
Q 030703 1 MSRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDP 80 (173)
Q Consensus 1 ~~~~~~~l~~~~iipdvl~~f~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~ytlvmvDpD~p~~~~~ 80 (173)
|.+++++|.+++|||||++.|.|+..|+|.|++ ..|.+|+.|++++++.+|+|+|.+.+.+++|||+|+|||+|+++++
T Consensus 2 ~~~~~~~l~~~~iipdvid~f~P~~~L~V~y~s-~~V~~G~~l~p~~t~~~P~i~~~~~~~~~~ytlim~DpDaP~~~~~ 80 (175)
T PLN00169 2 SPRDRDPLVVGRVVGDVLDPFTRSISLRVTYGS-REVNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMVDPDAPSPSNP 80 (175)
T ss_pred CcccccchhhCCcCCcccCCcCCceEEEEEECC-cCcCCcCCCCHHHhccCCEEEEccCCCCceeEEEEECCCCCCCCCC
Confidence 788999999999999999999999999999987 8999999999999999999999877668999999999999999999
Q ss_pred chhceeeeEeecCCCCCCCCccceeeeeeCCCCcceeeeEEEEEEeecCccccCCCCCCCCCcchhhhhhhCCCCceeEE
Q 030703 81 CLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQTVRPPASRDHFNTRQFSAENGLGLPVAAV 160 (173)
Q Consensus 81 ~~~~~lHwl~~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRYvflly~q~~~~~~~~~~~R~~F~~~~F~~~~~L~~pva~~ 160 (173)
++++||||+++||+++.....|+.+++|+||.|++|.|||+|+||+|+..+...++..|.+||+++|++++||+.|||||
T Consensus 81 ~~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp~G~HRYvflly~Q~~~~~~~~~~~R~~F~~~~Fa~~~~L~~PvA~n 160 (175)
T PLN00169 81 NLREYLHWLVTDIPATTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGSPVAAV 160 (175)
T ss_pred CcccEEEEEEeCCccccccccCccceeecCCCCCCCceeEEEEEEEcCCCcccCCcccCCCcCHHHHHHHhCCCCceEEE
Confidence 99999999999999875556788999999999999999999999999988765556789999999999999999999999
Q ss_pred EeccccchhhccC
Q 030703 161 YFNAQRETAARRR 173 (173)
Q Consensus 161 ~f~~~~~~~~~~~ 173 (173)
||++||++..++|
T Consensus 161 fF~a~~~~~~~~~ 173 (175)
T PLN00169 161 YFNCQRESGSGGR 173 (175)
T ss_pred EEEEecCCcCCcc
Confidence 9999999988776
No 2
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=100.00 E-value=4.8e-53 Score=324.48 Aligned_cols=173 Identities=51% Similarity=0.828 Sum_probs=162.9
Q ss_pred CCCCCCceeeeeeccccccccccceEEEEEEcCcccccccceeccceeccCCeeeeCCC-CcceeEEEEEeCCCCCCCCC
Q 030703 1 MSRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGE-DMRSAYTLIMTDPDAPSPSD 79 (173)
Q Consensus 1 ~~~~~~~l~~~~iipdvl~~f~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~-~~~~~ytlvmvDpD~p~~~~ 79 (173)
|..+++.+.+++|++|++..+.|++.|+|+|+++..|++|+.|++++++..|.|+|.+. +.++.|||||+|||+|++++
T Consensus 1 ~~~~~~~~~~~~iv~Dvl~~~~p~~~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a~~~~~yTLvm~DPDaPsr~~ 80 (185)
T KOG3346|consen 1 MSDIRDPLNKHRIVPDVLDDFEPSVKLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFADPGSLYTLVMTDPDAPSRSD 80 (185)
T ss_pred CcchhhhhhccCcchhhhccCCCceEEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcCCCCCeEEEEEeCCCCCCCCC
Confidence 67889999999999999999999999999999989999999999999999999999984 77999999999999999999
Q ss_pred cchhceeeeEeecCCCCCCCCccceeeeeeCCCCc--ceeeeEEEEEEeecCccccC--CCCCCCCCcchhhhhhhCCCC
Q 030703 80 PCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPV--VGIHRYVFILFKQRGRQTVR--PPASRDHFNTRQFSAENGLGL 155 (173)
Q Consensus 80 ~~~~~~lHwl~~ni~~~~~~~~g~~~~~Y~~P~P~--~G~HRYvflly~q~~~~~~~--~~~~R~~F~~~~F~~~~~L~~ 155 (173)
|++++|||||++|||++.+.+.|++++.|+||.|+ +|.|||+|+||+|+.+.... .+..|.+||+++|+++++|++
T Consensus 81 p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~~~~~R~~F~~~~F~~~~~lg~ 160 (185)
T KOG3346|consen 81 PKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEPSPLSRGNFNTRKFAKKYELGT 160 (185)
T ss_pred CcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccCCCCcccceeHHHHHHHhccCC
Confidence 99999999999999999778999999999999994 99999999999999988763 257899999999999999999
Q ss_pred ceeEEEeccccchhhccC
Q 030703 156 PVAAVYFNAQRETAARRR 173 (173)
Q Consensus 156 pva~~~f~~~~~~~~~~~ 173 (173)
||||+||++|||+..++|
T Consensus 161 PvA~~~f~aq~d~~~~~~ 178 (185)
T KOG3346|consen 161 PVAGNFFQAQWDDYVPKL 178 (185)
T ss_pred chhhheehhhcchhhHHH
Confidence 999999999999987754
No 3
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=4.2e-39 Score=242.90 Aligned_cols=139 Identities=46% Similarity=0.787 Sum_probs=125.8
Q ss_pred EEEEEEcCcccccccceeccceeccCCeeeeCCCC-cceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCCC----CC
Q 030703 26 KMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGED-MRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTD----AS 100 (173)
Q Consensus 26 ~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~----~~ 100 (173)
.|.|.|++...|.+|+.|++++++.+|+|+|.... .+++|+|+|+|||+|.+.++.++++||||++||+.+.. ..
T Consensus 2 ~l~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~~~~~y~lvm~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~~ 81 (154)
T cd00866 2 DLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLVS 81 (154)
T ss_pred eEEEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCCCCCeEEEEEECCCCCCCCCCCCCCEEEEEEeCcCCccccccccC
Confidence 68999998788999999999999999999999765 68999999999999999999999999999999998753 34
Q ss_pred ccceeeeeeCCCC--cceeeeEEEEEEeecCccccCC-------CCCCCCCcchhhhhhhCCCCceeEEEecc
Q 030703 101 FGKEIVSYETPKP--VVGIHRYVFILFKQRGRQTVRP-------PASRDHFNTRQFSAENGLGLPVAAVYFNA 164 (173)
Q Consensus 101 ~g~~~~~Y~~P~P--~~G~HRYvflly~q~~~~~~~~-------~~~R~~F~~~~F~~~~~L~~pva~~~f~~ 164 (173)
.|..+++|+||+| ++|+|||+|+||+|+..+.+.. ...|.+||+++|++++||+.|||+|||++
T Consensus 82 ~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 82 KGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred CCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 6789999999999 4689999999999999877643 46899999999999999999999999985
No 4
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.96 E-value=7e-30 Score=190.90 Aligned_cols=130 Identities=38% Similarity=0.680 Sum_probs=104.4
Q ss_pred eEEEEEEcCcccccccceeccce-eccCCeeeeCCCCcceeEEEEEeCCCCCCCCCcchhceeeeEeecCC---------
Q 030703 25 VKMNVIYNSNKQVANGHELMPAV-IIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIP--------- 94 (173)
Q Consensus 25 ~~L~V~y~~~~~v~~G~~l~~~~-t~~~P~v~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~--------- 94 (173)
..|.|+|.++..+..|+.+++.. +...|+ .+++|+|+|+|+|+|.+.+++.+++||||++||+
T Consensus 2 ~~L~v~f~~~~~~~~G~~~sp~~~~~~~P~-------~~~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~~~ 74 (146)
T PF01161_consen 2 GKLPVKFTGNKSVCPGNNVSPPLSWQNAPT-------GTKSYTLIMVDPDAPSRENPSFGPFLHWLVTNIPSTELPEGSD 74 (146)
T ss_dssp CEEEEEECTTEECSTTEEEEGGGECSS-TC-------TTSEEEEEEEETTSSBTTSCTTTSEEEEEEEEEETSEE-TTSS
T ss_pred cCcCceeEcccccCCCCCCCcCcccccCCC-------CCcEEEEEEECCCCCccccCCCCcEEEEEEcCCCCccCCCCCC
Confidence 57999995448999999999988 778887 4789999999999999888889999999999999
Q ss_pred CC-CCC-CccceeeeeeCCCCc--ceeeeEEEEEEeecCccccCCCCCCCCCcchhhhhhhCCCCc-eeEEEec
Q 030703 95 GT-TDA-SFGKEIVSYETPKPV--VGIHRYVFILFKQRGRQTVRPPASRDHFNTRQFSAENGLGLP-VAAVYFN 163 (173)
Q Consensus 95 ~~-~~~-~~g~~~~~Y~~P~P~--~G~HRYvflly~q~~~~~~~~~~~R~~F~~~~F~~~~~L~~p-va~~~f~ 163 (173)
.. ... +.|+.+++|.||+|+ +|.|||+|+||+|+..+.+ ......+++++..++++|+.+ +|++||+
T Consensus 75 ~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l--~~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 75 GARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPL--SDGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp TCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTS--GBSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred ccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCC--CCCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 10 011 226678999999995 6799999999999996655 234455788888899999987 8999996
No 5
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.92 E-value=2.7e-25 Score=168.82 Aligned_cols=122 Identities=29% Similarity=0.419 Sum_probs=97.4
Q ss_pred cccc-cceecc----ceeccCCeeeeCCCC-cceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCCCC----------
Q 030703 36 QVAN-GHELMP----AVIIAKPRVDIGGED-MRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDA---------- 99 (173)
Q Consensus 36 ~v~~-G~~l~~----~~t~~~P~v~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~---------- 99 (173)
.+.. |+.|+. ......|.|+|++.+ .+++|+|+|+|||+|.. ++|+||+++||+.+...
T Consensus 6 ~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~t~s~ali~~DpDap~~-----~~~~HWvv~nIp~~~~~~~~~~~~~~~ 80 (159)
T cd00457 6 EVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVMEDPDAPLG-----RPIVHGLVYGIPANKTSLSNDDFVVTD 80 (159)
T ss_pred CcCCCCCccChhhccCCCCcCCceEecCCCCCCeEEEEEEECCCCCCC-----CCceEEEEeccCcccccccccccccCC
Confidence 3445 777777 666778999999875 57999999999999843 48999999999986421
Q ss_pred --Cccc----------eeeeeeCCCCcc--eeeeEEEEEEeecCccccCC-CCCCCCCcchhhhhhhCCCCceeEEEec
Q 030703 100 --SFGK----------EIVSYETPKPVV--GIHRYVFILFKQRGRQTVRP-PASRDHFNTRQFSAENGLGLPVAAVYFN 163 (173)
Q Consensus 100 --~~g~----------~~~~Y~~P~P~~--G~HRYvflly~q~~~~~~~~-~~~R~~F~~~~F~~~~~L~~pva~~~f~ 163 (173)
..+. ....|.||+|+. |.|||+|+||+|+..+.... ...|..+++.+|++.|.|+ ++|.++++
T Consensus 81 ~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~~~~~~~~~~~~~~~~~~vL~-~~a~~~~~ 158 (159)
T cd00457 81 NGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSKLGDGRTKFEVARFAEGNVLG-AVGEWVGQ 158 (159)
T ss_pred CCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCccccccccCCCCHHHHHHHHHhCeee-EEEEEEEE
Confidence 0111 234999999954 69999999999998887542 3689999999999999997 68999886
No 6
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.76 E-value=3.3e-18 Score=128.73 Aligned_cols=94 Identities=27% Similarity=0.412 Sum_probs=73.9
Q ss_pred ccCCeeeeCCCC-cceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCC-CCCcc----------------ceeeeeeC
Q 030703 49 IAKPRVDIGGED-MRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTT-DASFG----------------KEIVSYET 110 (173)
Q Consensus 49 ~~~P~v~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~-~~~~g----------------~~~~~Y~~ 110 (173)
...|.|+|++.+ ..++|+|+|+|+|+|.. .+|+||+++||+.+. ....| .....|.|
T Consensus 25 ~~SP~l~w~~~p~~t~s~al~m~D~Dap~~-----~~~~HW~~~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~~~~Y~g 99 (150)
T cd00865 25 NVSPPLSWSGVPAGTKSLALIVEDPDAPTG-----GGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGG 99 (150)
T ss_pred CcCCCeEEcCCCCCCeEEEEEEEcCCCCCC-----CCEEEEEEeccCcccccccCCcccccCCCCCeEeecCCCCCeecC
Confidence 468999999865 57999999999999843 489999999999862 11111 24689999
Q ss_pred CCCcc-eeeeEEEEEEeecCccccCCCCCCCCCcchhhhhhhC
Q 030703 111 PKPVV-GIHRYVFILFKQRGRQTVRPPASRDHFNTRQFSAENG 152 (173)
Q Consensus 111 P~P~~-G~HRYvflly~q~~~~~~~~~~~R~~F~~~~F~~~~~ 152 (173)
|+|+. +.|||+|.||+++..+.+ ...++..++.++..
T Consensus 100 P~Pp~~~~HrY~f~vyAld~~l~~-----~~~~~~~~l~~ai~ 137 (150)
T cd00865 100 PCPPDGGPHRYVFTVYALDVPLLL-----PPGATRAELLFAMK 137 (150)
T ss_pred CCCcCCCceEEEEEEEEeCCccCC-----CCCCCHHHHHHHHh
Confidence 99975 899999999999988765 24677777776654
No 7
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.74 E-value=6.7e-18 Score=127.87 Aligned_cols=80 Identities=28% Similarity=0.490 Sum_probs=63.4
Q ss_pred cCCeeeeCCCC-cceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCCCC-----C-------ccc-------eeeeee
Q 030703 50 AKPRVDIGGED-MRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDA-----S-------FGK-------EIVSYE 109 (173)
Q Consensus 50 ~~P~v~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~-----~-------~g~-------~~~~Y~ 109 (173)
..|.|+|++.. ..++|+|+|+|||+|... .|+||+++||+++... . .|. ....|.
T Consensus 30 ~SP~L~w~~~P~~t~s~ali~~DpDap~~~-----~~~HWvv~nIP~~~~~l~eg~~~~~~~~p~g~~~g~n~~g~~gY~ 104 (158)
T PRK10257 30 ISPHLAWDDVPAGTKSFVVTCYDPDAPTGS-----GWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYG 104 (158)
T ss_pred CCceEEEcCCCCCceEEEEEEECCCCCCCC-----cEEEEEEEcCCCCcccccCCCCcccccCCCCceeccccCCCccCc
Confidence 58999999764 469999999999998753 7999999999975311 0 011 246899
Q ss_pred CCCCcce-eeeEEEEEEeecC-ccccC
Q 030703 110 TPKPVVG-IHRYVFILFKQRG-RQTVR 134 (173)
Q Consensus 110 ~P~P~~G-~HRYvflly~q~~-~~~~~ 134 (173)
||+|+.| .|||+|.||+++. .+.+.
T Consensus 105 GP~PP~g~~HrY~f~vyALd~~~L~l~ 131 (158)
T PRK10257 105 GAAPPKGETHRYIFTVHALDVERIDVD 131 (158)
T ss_pred CCCCccCCCceEEEEEEEecCcccCCC
Confidence 9999877 7999999999994 67764
No 8
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.72 E-value=3e-17 Score=126.96 Aligned_cols=95 Identities=23% Similarity=0.454 Sum_probs=71.5
Q ss_pred ccccccceecccee---------ccCCeeeeCCCC-cceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCCCC-----
Q 030703 35 KQVANGHELMPAVI---------IAKPRVDIGGED-MRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDA----- 99 (173)
Q Consensus 35 ~~v~~G~~l~~~~t---------~~~P~v~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~----- 99 (173)
..+..|..|+...+ ...|.++|++.+ ..++|+|+|.|||+|... .|+||+++|||++...
T Consensus 27 ~~f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gtks~aLi~~DpDaP~g~-----~~~HWvv~nIP~~~~~l~eg~ 101 (183)
T PRK09818 27 NEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTKSFAVTVYDPDAPTGS-----GWWHWTVANIPATVTYLPADA 101 (183)
T ss_pred cCccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCcEEEEEEEECCCCCCCC-----cEEEEEEEcCCCCccccCCCC
Confidence 45667888876542 268999999764 479999999999998753 7999999999975310
Q ss_pred --------Ccc-------ceeeeeeCCCCc--ceeeeEEEEEEeec-CccccC
Q 030703 100 --------SFG-------KEIVSYETPKPV--VGIHRYVFILFKQR-GRQTVR 134 (173)
Q Consensus 100 --------~~g-------~~~~~Y~~P~P~--~G~HRYvflly~q~-~~~~~~ 134 (173)
..| -....|.||+|+ .|.|||+|.||+++ ..+.+.
T Consensus 102 ~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l~ 154 (183)
T PRK09818 102 GRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVD 154 (183)
T ss_pred cccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCcccCCC
Confidence 001 124589999995 45899999999999 456654
No 9
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.72 E-value=4.9e-17 Score=121.22 Aligned_cols=93 Identities=28% Similarity=0.463 Sum_probs=71.9
Q ss_pred cCCeeeeCCCC-cceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCCC-----CC-------cc--------ceeeee
Q 030703 50 AKPRVDIGGED-MRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTD-----AS-------FG--------KEIVSY 108 (173)
Q Consensus 50 ~~P~v~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~-----~~-------~g--------~~~~~Y 108 (173)
..|.|+|++.. ..++|+|+|+|+|+|... .|+||+++||+++.. .. .| -....|
T Consensus 14 ~SP~l~w~~~P~~t~s~al~~~D~Dap~~~-----~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~~Y 88 (141)
T TIGR00481 14 ISPPLSWDGVPEGAKSLALTCIDPDAPTGC-----GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSGY 88 (141)
T ss_pred CCcEEEEcCCCCCceEEEEEEECCCCCCCC-----CeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCccE
Confidence 48999999764 478999999999998764 499999999998521 11 11 124699
Q ss_pred eCCCCcceeeeEEEEEEeecCc-cccCCCCCCCCCcchhhhhhhC
Q 030703 109 ETPKPVVGIHRYVFILFKQRGR-QTVRPPASRDHFNTRQFSAENG 152 (173)
Q Consensus 109 ~~P~P~~G~HRYvflly~q~~~-~~~~~~~~R~~F~~~~F~~~~~ 152 (173)
.||+|+.|.|||+|.||+++.. +.+. .++...++.++..
T Consensus 89 ~GP~PP~g~HrY~f~vyALd~~~l~l~-----~~~~~~~l~~ai~ 128 (141)
T TIGR00481 89 IGPCPPKGDHRYLFTVYALDTEKLDLD-----PGFSLADLGDAME 128 (141)
T ss_pred eCCCCcCCCEEEEEEEEEecCCCCCCC-----CCCCHHHHHHHHh
Confidence 9999988889999999999976 7763 2566677766654
No 10
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.69 E-value=5.7e-17 Score=124.36 Aligned_cols=114 Identities=24% Similarity=0.411 Sum_probs=79.2
Q ss_pred ccccccceecccee----ccCCeeeeCCC-CcceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCCC------CC---
Q 030703 35 KQVANGHELMPAVI----IAKPRVDIGGE-DMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTD------AS--- 100 (173)
Q Consensus 35 ~~v~~G~~l~~~~t----~~~P~v~~~~~-~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~------~~--- 100 (173)
..+..|..++...+ ...|.++|++. ..+++|+|+|.|||||+. ..|+||+++||+.... ..
T Consensus 28 ~~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS~AL~v~DpDAP~g-----~~~~HWvv~nIp~~~~~~~~~~~~~~~ 102 (174)
T COG1881 28 NAFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKSFALTVDDPDAPTG-----GGWVHWVVANIPADVTELPEGSGPKSK 102 (174)
T ss_pred hhhhCCCccchhhhcCCCCcCCceeecCCCCCCeeEEEEEECCCCCCC-----CcEEEEEEEccCCcccccccccccccc
Confidence 56777888777654 57899999976 457999999999999975 3899999999997311 00
Q ss_pred c----c---ceeeeeeCCCCccee-eeEEEEEEeecCccccCCCCCCCCCcchhhhhhhCCC
Q 030703 101 F----G---KEIVSYETPKPVVGI-HRYVFILFKQRGRQTVRPPASRDHFNTRQFSAENGLG 154 (173)
Q Consensus 101 ~----g---~~~~~Y~~P~P~~G~-HRYvflly~q~~~~~~~~~~~R~~F~~~~F~~~~~L~ 154 (173)
. | -.-..|.||+|+.|. |||.|.||+++...... +.+...=.+.+-++.|.|.
T Consensus 103 ~~~~qg~Nd~g~~~Y~Gp~PP~g~~HrY~f~vyALd~~~~~~-~~g~~~~~~~~~~~~hil~ 163 (174)
T COG1881 103 IGIVQGINDFGSRGYGGPCPPKGHGHRYYFTVYALDVELLLL-PAGASGAELGKAMEGHILA 163 (174)
T ss_pred cceEEeeccccccCcccCCCCCCCCeEEEEEEEEcccccccC-CCCCCHHHHHHHHHHHHHH
Confidence 0 1 123459999998776 99999999999854431 1122222334444555553
No 11
>KOG3586 consensus TBX1 and related T-box transcription factors [Transcription]
Probab=42.34 E-value=29 Score=30.24 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=33.1
Q ss_pred cccce--eccceeccCCeee--eCCCCcceeEEEEEeCCCCCCCCCcchhceee---eEeecC
Q 030703 38 ANGHE--LMPAVIIAKPRVD--IGGEDMRSAYTLIMTDPDAPSPSDPCLREHLH---WMVTDI 93 (173)
Q Consensus 38 ~~G~~--l~~~~t~~~P~v~--~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lH---wl~~ni 93 (173)
..|.+ |+++--...|+|+ |.+.++.+.|.|+| |-- | -++-.|+...| ||+++=
T Consensus 95 ~lGTEMIITKsGRRMFPTvrV~~~GldP~a~Y~vlm-DvV-P-vD~KRYRYayH~S~WlvAGk 154 (437)
T KOG3586|consen 95 DLGTEMIITKSGRRMFPTVRVKFSGLDPMADYYVLM-DVV-P-VDSKRYRYAYHSSSWLVAGK 154 (437)
T ss_pred hcCceEEEecccccccceEEEEEecCCcccceEEEE-eEE-e-cccceeeeeecccceeeecC
Confidence 35655 6666667899966 55677788887554 431 1 12234677666 998763
No 12
>PF09671 Spore_GerQ: Spore coat protein (Spore_GerQ); InterPro: IPR014099 Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=28.05 E-value=1.7e+02 Score=19.60 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=26.3
Q ss_pred eEEEEEEcCccc----ccccceeccceeccCCeeeeCCCCcceeEEEEEeCCCC
Q 030703 25 VKMNVIYNSNKQ----VANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDA 74 (173)
Q Consensus 25 ~~L~V~y~~~~~----v~~G~~l~~~~t~~~P~v~~~~~~~~~~ytlvmvDpD~ 74 (173)
+.+..+|.++.. |-.|-. +.+-.=-|-+++...++.|.|+|+..|-
T Consensus 22 ~T~Y~Tyenn~ewnakvf~Gvi----E~aGRDhiiisDp~tg~ryLllmvylDy 71 (81)
T PF09671_consen 22 ATFYMTYENNSEWNAKVFRGVI----EAAGRDHIIISDPKTGKRYLLLMVYLDY 71 (81)
T ss_pred EEEEEEecCchhhhheeeEEEe----hhcCcceEEEeCCCCCcEEEEEEEeeee
Confidence 467777876321 222211 1112233556655668999999998775
No 13
>cd07927 RHD-n_NFAT_like N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins and similar proteins. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes that are mainly involved in cell-cell interaction. Upon de-phosphorylation of the nuclear localization signal, NFAT enters the nucleus and acts as a transcription factor; its export from the nucleus is triggered by phosphorylation via export kinases. NFATs play important roles in mediating the immune response, and are found in T cells, B Cells, NK cells, mast cells, and monocytes. NFATs are also found in various non-hematopoietic cell types, where they play roles in development. This group al
Probab=24.60 E-value=2.8e+02 Score=21.09 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=44.7
Q ss_pred ccceEEEEEEcCcccccccceeccceeccCCeeeeCCCCcceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCC
Q 030703 22 IPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGT 96 (173)
Q Consensus 22 ~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~ 96 (173)
.|...++-.|.. .. ..|.. +-......|+|.+.+........+.++--|.|- ++.-||++.-+.+.
T Consensus 8 QPk~~~RfRY~c-EG-s~Gsi-~~~~~kt~PtVkl~~y~gpa~v~V~lvT~d~p~------rpH~h~lvgr~~GK 73 (161)
T cd07927 8 QPEPHHRARYET-EG-SRGAV-KAPSTGGFPTVKLHGYMEPVGLQVFIGTASGRL------KPHAFYQVHRITGK 73 (161)
T ss_pred CCchhceEEeec-cC-CCCCc-cCCCCCCCceEEEecccccEEEEEEEEeCCCCC------CCCcceeecccccc
Confidence 455558888876 22 56753 334457899999988765555666666666653 47899999877543
No 14
>PRK04243 50S ribosomal protein L15e; Validated
Probab=23.29 E-value=69 Score=25.16 Aligned_cols=28 Identities=25% Similarity=0.630 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCCCCCCCCcchhceeeeEeec
Q 030703 62 RSAYTLIMTDPDAPSPSDPCLREHLHWMVTD 92 (173)
Q Consensus 62 ~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~n 92 (173)
-+.|-||||||.-|.-.+. +-+.|+...
T Consensus 127 yK~fEVIlVDp~H~aIr~D---p~~nWI~~~ 154 (196)
T PRK04243 127 YKWYEVILVDPHHPAIKND---PDLNWICDK 154 (196)
T ss_pred cccEEEEEecCCCcchhcC---cccceeccc
Confidence 3789999999988775543 678898843
No 15
>cd07884 RHD-n_Relish N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Relish protein, in which the RHD domain co-occurs with C-terminal ankyrin repeats. Family members are sometimes referred to as p110 or p68 (proteolytically processed form). Relish is an NF-kappa B-like transcription factor, which plays a role in mediating innate immunity in Drosophila. It is activated via the Imd (immune deficiency) pathway, which triggers phosphorylation of Relish. IKK-dependent proteolytic cleavage of Relish (which involves Dredd) results in a smaller active form (without the C-terminal ankyrin repeats), which is transported into the nucleus and functions as a transactivator.
Probab=22.25 E-value=2.6e+02 Score=21.24 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=43.1
Q ss_pred ccceEEEEEEcCcccccccceecccee---ccCCeeeeCCCCcceeEEEEEeCCCCCCCCCcchhceeeeEee
Q 030703 22 IPSVKMNVIYNSNKQVANGHELMPAVI---IAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVT 91 (173)
Q Consensus 22 ~P~~~L~V~y~~~~~v~~G~~l~~~~t---~~~P~v~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ 91 (173)
.|...++-.|..-..-+.|+..-.+.+ +.-|+|.+.+......-.+-++--|.|. +++.-|||+.
T Consensus 8 QP~~~~RFRY~cEg~~SaGsipG~~St~~~KT~Ptv~i~ny~G~a~I~vslvT~d~p~-----~~pHpH~LVg 75 (159)
T cd07884 8 QPVDKFRFRYKSEMHGTHGSLLGERSTSSKKTFPTVKLCNYRGQAVIRCSLYQADDNR-----RKPHVHKLVG 75 (159)
T ss_pred CCcccceEEeecCCCCCcCCcCCCcCCCCCCcCCeEEEecCcCCEEEEEEEEECCCCC-----CCCCCccccc
Confidence 455567888876222467776655443 5789999987765555556666666652 2478899986
Done!