Query 030703
Match_columns 173
No_of_seqs 137 out of 1380
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 04:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wko_A Terminal flower 1 prote 100.0 6.2E-55 2.1E-59 336.4 12.2 172 1-173 8-180 (180)
2 3axy_A Protein heading DATE 3A 100.0 6.1E-53 2.1E-57 322.5 13.3 166 1-168 5-170 (170)
3 2iqy_A Phosphatidylethanolamin 100.0 3.2E-48 1.1E-52 301.1 13.9 166 3-170 3-180 (190)
4 2jyz_A CG7054-PA, GH14779P, PE 100.0 3.1E-47 1.1E-51 293.2 15.5 158 11-170 2-170 (179)
5 2gzq_A Phosphatidylethanolamin 100.0 9E-46 3.1E-50 289.4 9.6 164 2-167 12-200 (200)
6 1wpx_B Carboxypeptidase Y inhi 100.0 2.7E-45 9.2E-50 290.7 8.3 164 3-167 11-220 (220)
7 1fux_A Hypothetical 19.5 kDa p 99.9 5.4E-23 1.8E-27 156.1 7.6 95 35-134 8-135 (166)
8 3n08_A Putative phosphatidylet 99.9 2E-22 6.8E-27 150.9 9.3 112 35-152 9-137 (153)
9 1fjj_A Hypothetical 17.1 kDa p 99.9 8.6E-22 2.9E-26 148.5 8.2 81 49-134 30-132 (159)
10 2evv_A Hypothetical protein HP 99.8 5.6E-20 1.9E-24 143.6 7.0 104 40-152 47-186 (207)
11 3ewt_E Tumor necrosis factor r 29.6 14 0.00047 18.5 0.3 11 143-153 15-25 (25)
12 3jyw_L 60S ribosomal protein L 21.9 40 0.0014 25.3 1.7 29 62-93 126-154 (192)
No 1
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A
Probab=100.00 E-value=6.2e-55 Score=336.35 Aligned_cols=172 Identities=66% Similarity=1.140 Sum_probs=155.7
Q ss_pred CCCCCCceeeeeeccccccccccceEEEEEEcCcccccccceeccceeccCCeeeeCCCCcceeEEEEEeCCCCCCCCCc
Q 030703 1 MSRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDP 80 (173)
Q Consensus 1 ~~~~~~~l~~~~iipdvl~~f~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~ytlvmvDpD~p~~~~~ 80 (173)
|+.+.++|++++||||+++.|.|+..|+|.|++ ..|.+|+.|+++++..+|+|+|++.+.+++|||+|+|||+|+++++
T Consensus 8 ~~~~~~~l~~~~vipdvl~~f~P~~~l~V~y~s-~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DPDaP~~~~p 86 (180)
T 1wko_A 8 GTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNK-KQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDP 86 (180)
T ss_dssp --CTTHHHHHTTHHHHTBCCCCCCSEEEEEETT-EECCTTCBCCGGGGSSCCEEEEESSCTTCEEEEEEEECSCSBTTBC
T ss_pred HHHHHHHHHhCCCCCCccCCcCCCeeEEEEECC-eEcCCCCCcCHHHhCcCCeEEEecCCCCceEEEEEeCCCCCCCccC
Confidence 788999999999999999999999999999987 8999999999999999999999987656799999999999999999
Q ss_pred chhceeeeEeecCCCCCCCCccceeeeeeCCCCcceeeeEEEEEEeecCccccCC-CCCCCCCcchhhhhhhCCCCceeE
Q 030703 81 CLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQTVRP-PASRDHFNTRQFSAENGLGLPVAA 159 (173)
Q Consensus 81 ~~~~~lHwl~~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRYvflly~q~~~~~~~~-~~~R~~F~~~~F~~~~~L~~pva~ 159 (173)
++++|||||++||+++.....|..+++|.||+|++|.|||+|+||+|+..+.+.+ +..|.+||+++|+++|+|+.|||+
T Consensus 87 ~~~~~~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRYvf~ly~q~~~l~~~~~~~~R~~F~~~~F~~~~~Lg~PVa~ 166 (180)
T 1wko_A 87 FLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAA 166 (180)
T ss_dssp TTCCEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECCTTCCCCCCCCCSTTCCHHHHHHHTTCCSEEEE
T ss_pred CCccEEEEEEeccCcCccccCCceeeeeCCCCCCCCceEEEEEEEecCCccCCCCCccccCCcCHHHHHHHhCCCCcEEE
Confidence 9999999999999998666678999999999999999999999999999887764 789999999999999999999999
Q ss_pred EEeccccchhhccC
Q 030703 160 VYFNAQRETAARRR 173 (173)
Q Consensus 160 ~~f~~~~~~~~~~~ 173 (173)
|||++|||+++|||
T Consensus 167 ~fF~~q~d~~~r~~ 180 (180)
T 1wko_A 167 VFFNAQRETAARKR 180 (180)
T ss_dssp EEEEECCC------
T ss_pred EEEEEEECCcccCC
Confidence 99999999999997
No 2
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=100.00 E-value=6.1e-53 Score=322.54 Aligned_cols=166 Identities=63% Similarity=1.081 Sum_probs=156.7
Q ss_pred CCCCCCceeeeeeccccccccccceEEEEEEcCcccccccceeccceeccCCeeeeCCCCcceeEEEEEeCCCCCCCCCc
Q 030703 1 MSRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDP 80 (173)
Q Consensus 1 ~~~~~~~l~~~~iipdvl~~f~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~ytlvmvDpD~p~~~~~ 80 (173)
|+. +++|++++|||||++.|.|++.|.|+|++ ..|.+|+.|+++++..+|+|+|++.+.+++|||+|+|||+|+++++
T Consensus 5 m~~-~~~l~~~~vipdvl~~F~P~~~l~v~y~s-~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DpDaP~~~~p 82 (170)
T 3axy_A 5 MRD-RDPLVVGRVVGDVLDAFVRSTNLKVTYGS-KTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSPSDP 82 (170)
T ss_dssp CCT-TCHHHHTTHHHHTBCCCCCCSCEEEEETT-EECCTTEECCGGGSSSCCEEEECCSCTTCEEEEEEEETTCSCTTSC
T ss_pred cch-hchhhhCCccccccCCcCCceEEEEEECC-eEcCCCCEeCHHHhCcCCeEEEeCCCCCcEEEEEEECCCCCCCccC
Confidence 654 89999999999999999999999999987 8999999999999999999999987667999999999999999999
Q ss_pred chhceeeeEeecCCCCCCCCccceeeeeeCCCCcceeeeEEEEEEeecCccccCCCCCCCCCcchhhhhhhCCCCceeEE
Q 030703 81 CLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQTVRPPASRDHFNTRQFSAENGLGLPVAAV 160 (173)
Q Consensus 81 ~~~~~lHwl~~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRYvflly~q~~~~~~~~~~~R~~F~~~~F~~~~~L~~pva~~ 160 (173)
++++||||+++||+++.+.+.|+.+++|.||+|++|.|||+|+||+|+..+++.++..|.+||+++|+++|+|+.|||+|
T Consensus 83 ~~~~~~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRY~f~ly~q~~~l~~~~p~~R~~F~~~~F~~~~~Lg~Pva~~ 162 (170)
T 3axy_A 83 NLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAV 162 (170)
T ss_dssp TTCSEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECSSCCCCCCCSCSTTCCHHHHHHHTTCCSCSEEE
T ss_pred CCccEEEEEEeCCCCCccccCCceeceecCCCCCCCcEEEEEEEEecCCccCCCCccccCCcCHHHHHHHhCCCCcEEEE
Confidence 99999999999999986667788899999999999999999999999999888778899999999999999999999999
Q ss_pred Eeccccch
Q 030703 161 YFNAQRET 168 (173)
Q Consensus 161 ~f~~~~~~ 168 (173)
||++|||+
T Consensus 163 fF~~q~d~ 170 (170)
T 3axy_A 163 YFNSQREA 170 (170)
T ss_dssp EEEECCCC
T ss_pred EEEEEecC
Confidence 99999984
No 3
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Probab=100.00 E-value=3.2e-48 Score=301.15 Aligned_cols=166 Identities=30% Similarity=0.535 Sum_probs=152.4
Q ss_pred CCCCceee--eeeccccccccccceEEEEEEcCcccccccceeccceeccCCe-eeeCCCCcceeEEEEEeCCCCCCCCC
Q 030703 3 RTTDPLAV--GRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPR-VDIGGEDMRSAYTLIMTDPDAPSPSD 79 (173)
Q Consensus 3 ~~~~~l~~--~~iipdvl~~f~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~-v~~~~~~~~~~ytlvmvDpD~p~~~~ 79 (173)
.+.++|++ ++||||+++. .|+..|.|+|+++..|.+|+.|+++++...|+ |+|++.+.+++|||+|+|||+|++++
T Consensus 3 ~~~~~~~~~~~~vipdvl~~-~p~~~l~v~~~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~ytlvm~DpDaP~~~~ 81 (190)
T 2iqy_A 3 AMAADISQWAGPLSLQEVDE-PPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKD 81 (190)
T ss_dssp CSSCCGGGTTSTTCGGGTSS-CCSEECEEECSSCBCCSTTEECCGGGGSSCCSEEECTTCCTTSEEEEEEEESSSSCSSS
T ss_pred HHHHHHHHhcCccCCcCcCC-CCCceEEEEECCCcccCCCCEECHHHHhCCCceEEEccCCCCCEEEEEEECCCCCCCCC
Confidence 36788999 9999999998 99999999997768999999999999999999 99998765799999999999999999
Q ss_pred cchhceeeeEeecCCCCCCCCccceeeeeeCCCCc--ceeeeEEEEEEeecCccccCC-------CCCCCCCcchhhhhh
Q 030703 80 PCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPV--VGIHRYVFILFKQRGRQTVRP-------PASRDHFNTRQFSAE 150 (173)
Q Consensus 80 ~~~~~~lHwl~~ni~~~~~~~~g~~~~~Y~~P~P~--~G~HRYvflly~q~~~~~~~~-------~~~R~~F~~~~F~~~ 150 (173)
+++++|+||+++||+++ +...|..+++|.||+|+ +|.|||+|+||+|+..+++.+ ...|.+||+++|+++
T Consensus 82 p~~~~~~HWlv~nIp~~-~~~~G~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~~~~~~l~~~~~~~R~~F~~~~F~~~ 160 (190)
T 2iqy_A 82 PKFREWHHFLVVNMKGN-DISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKK 160 (190)
T ss_dssp CTTCCEEEEEEEEEETT-BGGGSEEEECCCCCCCCTTSCCEEEEEEEEECSSCCCCCSCCBCTTCCTTCSSCCHHHHHHH
T ss_pred CCcCCEEEEEEeCCChh-ccccCccccceeCCCCcCCCCceEEEEEEEEeCCccCcchhhccCCCcccCCCcCHHHHHHH
Confidence 99999999999999988 66788899999999994 789999999999999876542 578999999999999
Q ss_pred hCCCCceeEEEeccccchhh
Q 030703 151 NGLGLPVAAVYFNAQRETAA 170 (173)
Q Consensus 151 ~~L~~pva~~~f~~~~~~~~ 170 (173)
|+|+.|||+|||++|||++.
T Consensus 161 ~~Lg~pVA~~fF~~q~d~~v 180 (190)
T 2iqy_A 161 YHLGAPVAGTCFQAEWDDSV 180 (190)
T ss_dssp TTCCSCSEEEEEEECCCTTH
T ss_pred hCCCCeeEEEEEEEEccCch
Confidence 99999999999999999854
No 4
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-47 Score=293.17 Aligned_cols=158 Identities=39% Similarity=0.733 Sum_probs=144.0
Q ss_pred eeeccccccccccceEEEEEEcCcccccccceeccceeccCCeeeeCCCCc-ceeEEEEEeCCCCCCCCCcchhceeeeE
Q 030703 11 GRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDM-RSAYTLIMTDPDAPSPSDPCLREHLHWM 89 (173)
Q Consensus 11 ~~iipdvl~~f~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~-~~~ytlvmvDpD~p~~~~~~~~~~lHwl 89 (173)
++||||+++. .|+..|.|+|+++..|.+|+.|+++++...|+|+|++.+. +++|||+|+|||+|+++++++++|+||+
T Consensus 2 ~~vipdvl~~-~P~~~l~V~y~~~~~v~~G~~l~~~~~~~~P~l~~~~~p~~t~~ytlvm~DpDaP~~~~p~~~~~~HWl 80 (179)
T 2jyz_A 2 DDIVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAPTRQDPKYREILHWS 80 (179)
T ss_dssp CCBTTTTBSS-CCSEECEEESSSSCCBCTTEECCSSCTTSCCEEECTTTCCSCSEEEEEEECCCSSCTTCCSSCCCSCCE
T ss_pred CcccCcCcCC-CCcCeEEEEECCCcccCCCCEeCHHHhccCCeEEEeCCCCCceeEEEEEeCCCCCCCccCCCccEEEEE
Confidence 6899999999 9999999999866899999999999999999999987654 4999999999999999999999999999
Q ss_pred eecCCCCC-CCCccceeeeeeCCCCc--ceeeeEEEEEEeecCccccC-------CCCCCCCCcchhhhhhhCCCCceeE
Q 030703 90 VTDIPGTT-DASFGKEIVSYETPKPV--VGIHRYVFILFKQRGRQTVR-------PPASRDHFNTRQFSAENGLGLPVAA 159 (173)
Q Consensus 90 ~~ni~~~~-~~~~g~~~~~Y~~P~P~--~G~HRYvflly~q~~~~~~~-------~~~~R~~F~~~~F~~~~~L~~pva~ 159 (173)
++||+++. +...|..+++|.||+|+ +|.|||+|+||+|+..++ . ....|.+||+++|+++|+|+.||||
T Consensus 81 v~nIp~~~~~l~~g~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~-~~~~l~~~~~~~R~~F~~~~F~~~~~Lg~pvA~ 159 (179)
T 2jyz_A 81 VVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIE-ETPTISNTTRTGRLNFNARDFAAKHGLGEPIAA 159 (179)
T ss_dssp EECCCTTSSSTTSSEEEECCCSCCSCGGGCSEEEEEEEEEECSCCC-CSSCBCTTCCSSSCCCCTHHHHHHTTCCSCSEE
T ss_pred EECCCCCccccCcccccccccCCCCCCCCCceEEEEEEEEcCCcCC-chhhccCCCcccCCCcCHHHHHHHhCCCCccEE
Confidence 99999874 56678899999999994 779999999999998776 2 2578999999999999999999999
Q ss_pred EEeccccchhh
Q 030703 160 VYFNAQRETAA 170 (173)
Q Consensus 160 ~~f~~~~~~~~ 170 (173)
|||++|||++.
T Consensus 160 ~~F~~q~d~~v 170 (179)
T 2jyz_A 160 NYYQAQYDDYV 170 (179)
T ss_dssp EEEEECCCTHH
T ss_pred EEEEEEecCch
Confidence 99999999853
No 5
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=100.00 E-value=9e-46 Score=289.42 Aligned_cols=164 Identities=27% Similarity=0.392 Sum_probs=144.1
Q ss_pred CCCCCceeeeeecccccc--ccccceEEEEEEcCcccccccceeccceeccCCe-eeeCCCC-cceeEEEEEeCCCCCCC
Q 030703 2 SRTTDPLAVGRVVGDVVD--TFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPR-VDIGGED-MRSAYTLIMTDPDAPSP 77 (173)
Q Consensus 2 ~~~~~~l~~~~iipdvl~--~f~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~-v~~~~~~-~~~~ytlvmvDpD~p~~ 77 (173)
+.++++|++++||||+++ .|+|++.|.|+|+++..|.+|+.|+++++..+|+ |+|++.+ .+++|||+|+|||+|++
T Consensus 12 ~~~~~~l~~~~IipDvl~~~~f~p~~~L~V~y~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~~ytLvm~DPDaP~~ 91 (200)
T 2gzq_A 12 PPTIEELKREKIIPHVFPDENVDLTVDMYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMIDPDFPSR 91 (200)
T ss_dssp SCCHHHHHHTTHHHHTSSSSCCCCCCCEEEEEETTEEECSSCEEESTTCSSCCSEEEESSCCCTTEEEEEEEEETTCSCS
T ss_pred HHHHHHHHhCCccCcccCCCCCcceeEEEEEECCCcccCCCCEeCHHHHhCCCceEEEccCCCCCceEEEEEECCCCCCC
Confidence 467899999999999996 4999999999999668999999999999999999 9999764 37999999999999999
Q ss_pred CCcchhceeeeEeecCCCCCCCCcc-----ceeeeeeCCCC--cceeeeEEEEEE--eecCccccCC---C-----CCCC
Q 030703 78 SDPCLREHLHWMVTDIPGTTDASFG-----KEIVSYETPKP--VVGIHRYVFILF--KQRGRQTVRP---P-----ASRD 140 (173)
Q Consensus 78 ~~~~~~~~lHwl~~ni~~~~~~~~g-----~~~~~Y~~P~P--~~G~HRYvflly--~q~~~~~~~~---~-----~~R~ 140 (173)
+++++++||||+++||+++. ...| ..+++|.||+| ++|.|||+|+|| +|+..+++.. . .+|.
T Consensus 92 ~~~~~~~~~HWlv~nIp~~~-~~~g~~~~~~~~~~Y~gP~Pp~g~g~HRYvF~l~~fkQ~~~~~~~~~p~~~~~~~~~R~ 170 (200)
T 2gzq_A 92 RRPDGRDYVHWAVSGIKSKE-LVKGTDKNCITLLPYVGPSIKKGTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITRV 170 (200)
T ss_dssp SCCTTCSEEEEEEEEECSSE-EETTCCTTCEEEECCCCCCCCTTSCCEEEEEEEEEEEGGGTTCBTTBCCCCCGGGCCTT
T ss_pred CCCCCCCEEEEEEeCCCcCc-ccCCccCCCcceeeeeCCCCcCCCCcceEEEEEEEecccCcccccccCccccccccccC
Confidence 99999999999999999862 2233 37899999999 678999999986 9998776532 2 3899
Q ss_pred CCcch----hhhhhhCCCCceeEEEeccccc
Q 030703 141 HFNTR----QFSAENGLGLPVAAVYFNAQRE 167 (173)
Q Consensus 141 ~F~~~----~F~~~~~L~~pva~~~f~~~~~ 167 (173)
+||++ +|++++|| .|||+|||++|++
T Consensus 171 ~F~~~~gv~~F~~~~gL-~pVganfF~~~n~ 200 (200)
T 2gzq_A 171 KFNNCQSAYNVIQMNDM-KIVGFNWCQMRRK 200 (200)
T ss_dssp HHHHTCCHHHHHHHTTC-EEEEEEEEEEECC
T ss_pred ccccchhhHHHHHHcCC-EEEEEEEEEEecC
Confidence 99998 89999999 5899999999974
No 6
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Probab=100.00 E-value=2.7e-45 Score=290.66 Aligned_cols=164 Identities=31% Similarity=0.472 Sum_probs=143.9
Q ss_pred CCCCceeeeeeccccccc--cccceEEEEEEcCcccccccceeccceeccCCeeeeCC----------C-----CcceeE
Q 030703 3 RTTDPLAVGRVVGDVVDT--FIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGG----------E-----DMRSAY 65 (173)
Q Consensus 3 ~~~~~l~~~~iipdvl~~--f~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~----------~-----~~~~~y 65 (173)
+++++|++++|||||++. |.|+..|.|+|+++..|.+|+.|+++++...|.|+|.. . +.+++|
T Consensus 11 ~~~~~l~~~~IipDvl~~~~F~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 90 (220)
T 1wpx_B 11 ASIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLF 90 (220)
T ss_dssp HHHHHHHHTTHHHHTSCCTTCCCSEEEEEEEETTEEECSSCBCCGGGGSSCCEEEEEEETTCC------CCCCCCSSCCE
T ss_pred HHHHHHHhCCCCccccCCcCCCCceEEEEEECCCcEeCCCCCcCHHHhcCCCeeEeCCCCCcccccccccccCCCCCceE
Confidence 467899999999999998 99999999999986779999999999999999998871 1 247999
Q ss_pred EEEEeCCCCCCCCCcchhceeeeEeecCCCCCC-------C---------Ccc-ceeeeeeCCCCc--ceeeeEEEEEEe
Q 030703 66 TLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTD-------A---------SFG-KEIVSYETPKPV--VGIHRYVFILFK 126 (173)
Q Consensus 66 tlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~-------~---------~~g-~~~~~Y~~P~P~--~G~HRYvflly~ 126 (173)
+|+|+|||+|++.++++++|+||+++||+++.. . +.| ...++|.||+|+ +|.|||+|+||+
T Consensus 91 ~lvm~DpDaP~~~~p~~~~~~HW~v~nIp~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~Y~gP~Pp~g~g~HRY~f~lya 170 (220)
T 1wpx_B 91 TLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYK 170 (220)
T ss_dssp EEEEEESSSSCSSCCTTCSEEEEEEEEEEECC---------CCEEEEEEECTTCEEEECCCCCCCCTTSCCEEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCcCcEEEEEEEccCCCccccccccCCCCccceEeecCCccccccccCCCCccCCCCceEEEEEEe
Confidence 999999999999999999999999999987521 0 235 678999999995 679999999999
Q ss_pred ecCccccC---CCCCCCCCc-------chhhhhhhCCCCceeEEEeccccc
Q 030703 127 QRGRQTVR---PPASRDHFN-------TRQFSAENGLGLPVAAVYFNAQRE 167 (173)
Q Consensus 127 q~~~~~~~---~~~~R~~F~-------~~~F~~~~~L~~pva~~~f~~~~~ 167 (173)
|+..+++. ++..|.+|+ +++|+++|+| .|||+|||++||+
T Consensus 171 ~~~~l~~~~~~~~~~R~~f~~~~~~f~~~~F~~~~~L-~pVAanfF~~q~~ 220 (220)
T 1wpx_B 171 QPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNL-QLVASNFFYAETK 220 (220)
T ss_dssp CCTTCCGGGSCCCCCSBGGGCCSSSCSHHHHHHTTTC-EEEEEEEEEECCC
T ss_pred cCCcCCccccCCcccccCCCccccchhHHHHHHHhCC-eEEEEEEEEEecC
Confidence 99987643 467888998 9999999999 6899999999986
No 7
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2
Probab=99.88 E-value=5.4e-23 Score=156.07 Aligned_cols=95 Identities=21% Similarity=0.447 Sum_probs=76.2
Q ss_pred ccccccceeccceecc---------CCeeeeCCCC-cceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCCC-CCcc-
Q 030703 35 KQVANGHELMPAVIIA---------KPRVDIGGED-MRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTD-ASFG- 102 (173)
Q Consensus 35 ~~v~~G~~l~~~~t~~---------~P~v~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~-~~~g- 102 (173)
..+..|..|++..+.. .|.|+|++.+ .+++|+|+|+|||+|++ +.|+||+++||+++.. ...|
T Consensus 8 ~~~~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~g~ 82 (166)
T 1fux_A 8 NEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTG-----SGWWHWTVVNIPATVTYLPVDA 82 (166)
T ss_dssp SSCCTTSBCCGGGBCEETTEECCCCCCCEEEECCCTTCCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECTTT
T ss_pred cCcCCcCCCCHHHhccccccCCCCcCCeEEEeCCCCCCeEEEEEEECCCCCCC-----CcEEEeEEeCcCCCcccccCCc
Confidence 4677899999988766 9999998764 47999999999999975 3799999999987631 1111
Q ss_pred -----------c-------eeeeeeCCCCc--ceeeeEEEEEEeecC-ccccC
Q 030703 103 -----------K-------EIVSYETPKPV--VGIHRYVFILFKQRG-RQTVR 134 (173)
Q Consensus 103 -----------~-------~~~~Y~~P~P~--~G~HRYvflly~q~~-~~~~~ 134 (173)
. ....|.||+|+ +|.|||+|+||+|+. .+.++
T Consensus 83 ~~~~~~~l~~g~~~g~nd~g~~~Y~GP~PP~g~g~HRY~F~lyald~~~l~l~ 135 (166)
T 1fux_A 83 GRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVD 135 (166)
T ss_dssp TCTTCTTSCTTCEECCCTTSSSSCCCBCCCTTCCCEECEEEEEEESCSCCCCC
T ss_pred cccccccCCCCcEEeecCCCCccccCCCCcCCCCcEEEEEEEeEeccccCCCC
Confidence 1 46899999995 458999999999997 67764
No 8
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=99.87 E-value=2e-22 Score=150.92 Aligned_cols=112 Identities=18% Similarity=0.284 Sum_probs=84.0
Q ss_pred ccccccceecccee----ccCCeeeeCCCC-cceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCCC-CCcc------
Q 030703 35 KQVANGHELMPAVI----IAKPRVDIGGED-MRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTD-ASFG------ 102 (173)
Q Consensus 35 ~~v~~G~~l~~~~t----~~~P~v~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~-~~~g------ 102 (173)
..+..|..|+...+ ...|.|+|++.+ .+++|+|+|+|||+|++.++ .+.|+||+++||+++.. ...|
T Consensus 9 ~~f~~g~~ip~~~t~~G~n~SP~l~w~~~P~~tks~ali~~DpDAPs~~~~-~~~~~HWvv~nIp~~~~~l~~g~~~g~~ 87 (153)
T 3n08_A 9 QAFSYGRPIPKKYSCQGVGISPPLSFSDVPREAKSLVLIVEDPDVPPSVRE-DGLWIHWIVYNLSPVVSNLAEGAQIFAV 87 (153)
T ss_dssp TTBCTTEECCGGGSTTSCCCCCCEEEECCCTTCCEEEEEEEETTSCTTTCT-TSCEEEEEEEEECTTCCEECTTCCCSSE
T ss_pred CCcCCCCCCCHHHcCCCCCcCcEEEEcCCCCCCeEEEEEEECCCCCCccCC-CCcEEEEEEEcCCCCcccccCCCCCCce
Confidence 34556666666543 478999999764 46999999999999987764 46899999999998632 1111
Q ss_pred -----ceeeeeeCCCCcceeeeEEEEEEeecCccccCCCCCCCCCcchhhhhhhC
Q 030703 103 -----KEIVSYETPKPVVGIHRYVFILFKQRGRQTVRPPASRDHFNTRQFSAENG 152 (173)
Q Consensus 103 -----~~~~~Y~~P~P~~G~HRYvflly~q~~~~~~~~~~~R~~F~~~~F~~~~~ 152 (173)
-....|.||+|+.|.|||+|+||+|+..+.++ .++...++.++..
T Consensus 88 ~g~n~~g~~~Y~GP~PP~g~HrY~F~vyAld~~L~l~-----~~~~~~~l~~a~~ 137 (153)
T 3n08_A 88 QGLNTAGEIGYCPPCPPDAKHRYYFYAYALDVVLSDE-----EGVTKEQLLEAMD 137 (153)
T ss_dssp ECBCTTSSBSCCCCCCSSSCEEEEEEEEEESSCCCCC-----SSCCHHHHHHHHT
T ss_pred EeecCCCCccccCCcCcCCCEEEEEEEEEECCcCCCC-----CCCCHHHHHHHhh
Confidence 14689999999888899999999999987664 2455555555543
No 9
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Probab=99.86 E-value=8.6e-22 Score=148.46 Aligned_cols=81 Identities=26% Similarity=0.470 Sum_probs=65.4
Q ss_pred ccCCeeeeCCC-CcceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCCC-CCccc------------------eeeee
Q 030703 49 IAKPRVDIGGE-DMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTD-ASFGK------------------EIVSY 108 (173)
Q Consensus 49 ~~~P~v~~~~~-~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~-~~~g~------------------~~~~Y 108 (173)
...|.|+|++. +.+++|+|+|+|||+|++ +.|+||+++||+++.. ...|. ....|
T Consensus 30 n~sP~l~w~~~P~~t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~g~~~~~~~~~~g~~~g~n~~g~~~Y 104 (159)
T 1fjj_A 30 NISPHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGY 104 (159)
T ss_dssp CCCCCEEEECCCTTCCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECTTGGGTSSCCCTTCEECBCTTSSBSC
T ss_pred CcCCeEEEcCCCCCCeEEEEEEECCCCCCC-----CcEEEEEEEccCCCccccCCCcccccccCCCCcEEeecCCCCCcc
Confidence 46889999876 357999999999999976 3799999999997631 11111 36899
Q ss_pred eCCCCcce-eeeEEEEEEeecC-ccccC
Q 030703 109 ETPKPVVG-IHRYVFILFKQRG-RQTVR 134 (173)
Q Consensus 109 ~~P~P~~G-~HRYvflly~q~~-~~~~~ 134 (173)
.||+|+.| .|||+|+||+|+. .+.++
T Consensus 105 ~GP~PP~g~~HRY~F~lyald~~~l~l~ 132 (159)
T 1fjj_A 105 DGAAPPKGETHRYIFTVHALDIERIDVD 132 (159)
T ss_dssp CCBCCSTTCCEEEEEEEEEESSSCCSCC
T ss_pred cCCCCcCCCceEEEEEEEEccCcccCCC
Confidence 99999877 8999999999997 67764
No 10
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=99.80 E-value=5.6e-20 Score=143.59 Aligned_cols=104 Identities=17% Similarity=0.299 Sum_probs=74.7
Q ss_pred cceeccc--eeccCCeeeeCCCCcceeEEEEEeCCCCCCCCCcchhceeeeEeecCCCCCCCC-----------------
Q 030703 40 GHELMPA--VIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDAS----------------- 100 (173)
Q Consensus 40 G~~l~~~--~t~~~P~v~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~----------------- 100 (173)
|..++|. .-...|.|+|++.+.+++|+|+|+|||+|++. .++|+||+++||+.+. ..
T Consensus 47 G~~~sP~~~~p~~Sp~L~W~~~~gtks~aLvm~DPDAP~~~---g~~~~HWvv~NI~~~~-l~eg~~~~~~g~~qG~N~~ 122 (207)
T 2evv_A 47 PKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHDAQKVC---GMPFVHWVVGNIAHNV-LEENASMMDKRIVQGVNSL 122 (207)
T ss_dssp CGGGBCTTSCBCCCCCEEECCCTTCSEEEEEEEETTHHHHH---SSCEEEEEEEEECSSE-ECTTHHHHCSSSEECCCTT
T ss_pred CCCcCCccCCCCccceEEEecCCCCeEEEEEEECCCCCCCC---CCcEEEEEEeCCCCCc-cccCcccCCCCceeccccc
Confidence 4455541 22345689998776689999999999999753 3589999999995331 11
Q ss_pred ---cccee-------------eeeeCCCCcceeeeEEEEEEeecC-ccccCCCCCCCCCcchhhhhhhC
Q 030703 101 ---FGKEI-------------VSYETPKPVVGIHRYVFILFKQRG-RQTVRPPASRDHFNTRQFSAENG 152 (173)
Q Consensus 101 ---~g~~~-------------~~Y~~P~P~~G~HRYvflly~q~~-~~~~~~~~~R~~F~~~~F~~~~~ 152 (173)
.|... ..|.||+|+.|.|||+|+||+|+. .+.++ ..|...++.++..
T Consensus 123 ~~~~g~~~~~~~~k~~~~~~~~~Y~GP~PP~G~HRYvF~vyALd~~~L~l~-----~~~~~~~l~~am~ 186 (207)
T 2evv_A 123 TQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALK-----APFFLGDLHDKMR 186 (207)
T ss_dssp CSCSTTCSSCHHHHHHHHHHTCSCCCCCCSSSCEEEEEEEEEESSSCCCCC-----SSCCHHHHHHHHT
T ss_pred ccccccccccccccccccccccccCCCCCCCCcEEEEEEEEEecCccCCCC-----CCCCHHHHHHHhh
Confidence 12111 789999999999999999999998 77663 3455555555444
No 11
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=29.61 E-value=14 Score=18.48 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=8.2
Q ss_pred cchhhhhhhCC.
Q 030703 143 NTRQFSAENGL. 153 (173)
Q Consensus 143 ~~~~F~~~~~L. 153 (173)
++.+|++++|+
T Consensus 15 ~Vk~fvR~~gi. 25 (25)
T 3ewt_E 15 QVKGFVRKNGVx 26 (26)
T ss_pred HHHHHHHHcCC.
Confidence 46788888875
No 12
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=21.93 E-value=40 Score=25.29 Aligned_cols=29 Identities=14% Similarity=0.457 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCCCCCCCCcchhceeeeEeecC
Q 030703 62 RSAYTLIMTDPDAPSPSDPCLREHLHWMVTDI 93 (173)
Q Consensus 62 ~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni 93 (173)
-+.|-||||||.-|.-.+. +-+.|+....
T Consensus 126 yK~fEVILVDp~H~aIr~D---p~~nWI~~~~ 154 (192)
T 3jyw_L 126 YKYFEVILVDPQHKAIRRD---ARYNWICDPV 154 (192)
T ss_dssp CEEEEEEEECSSCSSTTTS---STTTGGGSGG
T ss_pred cceEEEEEecCCchhhccC---CccccccCch
Confidence 4899999999988775433 5678877544
Done!