Query 030705
Match_columns 173
No_of_seqs 108 out of 1040
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:21:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1691 emp24/gp25L/p24 family 100.0 7.4E-37 1.6E-41 227.4 18.4 164 4-171 5-170 (210)
2 KOG1690 emp24/gp25L/p24 family 100.0 1.3E-35 2.8E-40 217.8 17.3 164 6-171 5-175 (215)
3 KOG1692 Putative cargo transpo 100.0 2.1E-34 4.6E-39 210.6 15.0 158 5-171 4-161 (201)
4 KOG1693 emp24/gp25L/p24 family 100.0 1.2E-30 2.5E-35 192.0 16.1 155 9-171 11-167 (209)
5 PF01105 EMP24_GP25L: emp24/gp 99.9 3E-29 6.6E-34 186.8 0.0 145 21-172 1-149 (183)
6 KOG3287 Membrane trafficking p 99.9 8E-25 1.7E-29 163.0 15.3 146 19-171 33-189 (236)
7 PF01835 A2M_N: MG2 domain; I 95.5 0.41 9E-06 31.7 10.2 66 40-105 13-86 (99)
8 smart00557 IG_FLMN Filamin-typ 92.4 2.1 4.6E-05 28.1 9.0 45 62-106 31-78 (93)
9 PF13473 Cupredoxin_1: Cupredo 90.7 1.2 2.6E-05 29.8 6.1 23 84-106 74-97 (104)
10 PF13860 FlgD_ig: FlgD Ig-like 90.7 1.8 4E-05 27.7 6.6 43 42-92 12-56 (81)
11 PF04151 PPC: Bacterial pre-pe 90.2 2 4.3E-05 26.5 6.3 61 32-102 3-68 (70)
12 PF11589 DUF3244: Domain of un 88.9 2 4.4E-05 29.0 6.1 45 63-107 48-96 (106)
13 PF15417 DUF4624: Domain of un 86.8 8.2 0.00018 26.6 7.8 79 29-122 37-123 (132)
14 PRK06655 flgD flagellar basal 83.7 6.6 0.00014 30.5 7.2 56 42-105 113-179 (225)
15 PF00630 Filamin: Filamin/ABP2 83.6 9.7 0.00021 24.8 7.2 45 62-106 41-92 (101)
16 PRK12812 flgD flagellar basal 82.4 18 0.00039 28.7 9.2 57 42-106 128-195 (259)
17 PF13620 CarboxypepD_reg: Carb 82.3 5.3 0.00011 25.0 5.3 43 64-106 16-58 (82)
18 PF05738 Cna_B: Cna protein B- 81.6 3.9 8.5E-05 25.0 4.3 44 64-107 3-48 (70)
19 KOG3285 Spindle assembly check 81.3 2.9 6.3E-05 31.2 4.1 56 96-152 81-136 (203)
20 PRK12813 flgD flagellar basal 81.0 9 0.0002 29.7 6.9 57 41-106 110-175 (223)
21 PHA03376 BARF1; Provisional 80.9 23 0.00049 27.1 9.4 96 1-107 1-111 (221)
22 PRK05842 flgD flagellar basal 79.2 12 0.00027 30.3 7.4 60 42-105 149-221 (295)
23 PF07495 Y_Y_Y: Y_Y_Y domain; 78.6 12 0.00025 22.4 7.9 57 61-119 6-65 (66)
24 PF13897 GOLD_2: Golgi-dynamic 75.9 3.9 8.5E-05 29.1 3.3 30 89-119 104-133 (136)
25 PF12690 BsuPI: Intracellular 75.8 14 0.00031 23.8 5.7 22 61-82 22-43 (82)
26 PF09315 DUF1973: Domain of un 75.3 32 0.00069 25.7 10.3 67 30-107 17-89 (179)
27 PRK12634 flgD flagellar basal 75.1 28 0.0006 27.0 8.1 45 62-106 121-176 (221)
28 PRK02710 plastocyanin; Provisi 73.7 26 0.00057 24.1 9.6 18 85-102 87-105 (119)
29 PRK14081 triple tyrosine motif 73.4 39 0.00084 30.6 9.5 58 62-120 415-476 (667)
30 PRK12633 flgD flagellar basal 72.9 41 0.00089 26.2 8.6 45 62-106 128-183 (230)
31 PF13600 DUF4140: N-terminal d 71.8 26 0.00057 23.2 9.7 34 133-166 68-101 (104)
32 PRK14081 triple tyrosine motif 68.1 65 0.0014 29.2 9.7 58 62-119 222-283 (667)
33 PF05753 TRAP_beta: Translocon 67.9 49 0.0011 24.8 8.3 32 34-71 30-61 (181)
34 PF10572 UPF0556: Uncharacteri 67.8 45 0.00098 24.4 10.5 56 20-75 24-85 (158)
35 PF14524 Wzt_C: Wzt C-terminal 67.5 17 0.00037 24.9 5.2 70 30-106 25-94 (142)
36 PF07888 CALCOCO1: Calcium bin 63.6 68 0.0015 28.4 8.8 78 23-108 14-100 (546)
37 PRK09619 flgD flagellar basal 63.1 58 0.0013 25.1 7.6 56 42-106 110-173 (218)
38 TIGR02186 alph_Pro_TM conserve 60.0 87 0.0019 25.0 8.5 26 62-87 68-93 (261)
39 PF05279 Asp-B-Hydro_N: Aspart 59.9 5.2 0.00011 31.4 1.4 27 4-30 11-39 (243)
40 TIGR03503 conserved hypothetic 58.9 1.1E+02 0.0024 25.8 10.2 59 60-119 239-300 (374)
41 PRK13211 N-acetylglucosamine-b 58.2 1.3E+02 0.0028 26.3 10.3 58 62-119 340-404 (478)
42 PF10528 PA14_2: GLEYA domain; 57.9 27 0.00058 24.0 4.5 48 27-80 55-102 (113)
43 TIGR03096 nitroso_cyanin nitro 55.2 74 0.0016 22.7 6.8 82 21-104 26-121 (135)
44 PF05377 FlaC_arch: Flagella a 53.4 47 0.001 19.8 4.6 27 137-163 2-28 (55)
45 TIGR02231 conserved hypothetic 50.5 1.7E+02 0.0037 25.5 9.9 91 66-165 4-101 (525)
46 KOG0518 Actin-binding cytoskel 49.4 70 0.0015 30.5 6.9 47 62-108 882-931 (1113)
47 PF04728 LPP: Lipoprotein leuc 48.2 47 0.001 19.9 3.9 27 136-162 4-30 (56)
48 PF10794 DUF2606: Protein of u 47.3 97 0.0021 21.7 8.9 25 83-107 85-109 (131)
49 PF08234 Spindle_Spc25: Chromo 45.9 73 0.0016 19.9 6.2 42 93-137 4-45 (74)
50 PF13715 DUF4480: Domain of un 45.6 75 0.0016 19.9 8.9 48 64-119 17-64 (88)
51 KOG2096 WD40 repeat protein [G 40.3 2.2E+02 0.0047 23.7 7.7 49 60-108 238-292 (420)
52 PF12958 DUF3847: Protein of u 39.7 82 0.0018 20.6 4.4 33 137-169 10-45 (86)
53 PF13314 DUF4083: Domain of un 39.4 28 0.0006 21.0 1.9 23 130-152 34-56 (58)
54 KOG0518 Actin-binding cytoskel 38.6 1.2E+02 0.0027 28.9 6.7 44 62-105 389-436 (1113)
55 PF11598 COMP: Cartilage oligo 37.9 80 0.0017 18.0 4.2 32 140-171 6-37 (45)
56 KOG3478 Prefoldin subunit 6, K 37.8 77 0.0017 21.8 4.1 37 136-172 77-113 (120)
57 COG4467 Regulator of replicati 37.4 61 0.0013 22.2 3.5 32 135-166 8-39 (114)
58 PF11853 DUF3373: Protein of u 36.1 29 0.00063 30.2 2.3 32 132-164 22-53 (489)
59 PRK10378 inactive ferrous ion 35.8 2.7E+02 0.0058 23.5 10.0 67 21-101 31-103 (375)
60 PF07210 DUF1416: Protein of u 35.8 1.3E+02 0.0027 19.7 7.1 63 37-107 3-65 (85)
61 COG4062 MtrB Tetrahydromethano 35.2 35 0.00076 23.0 2.1 42 115-157 12-53 (108)
62 PF06156 DUF972: Protein of un 35.0 69 0.0015 21.8 3.6 26 137-162 10-35 (107)
63 COG4856 Uncharacterized protei 33.7 3E+02 0.0064 23.4 8.5 40 62-104 69-112 (403)
64 PRK00965 tetrahydromethanopter 33.3 47 0.001 22.3 2.5 42 115-157 12-53 (96)
65 PRK15396 murein lipoprotein; P 32.9 94 0.002 20.0 3.7 32 132-163 22-53 (78)
66 COG1938 Archaeal enzymes of AT 32.1 1.1E+02 0.0023 24.2 4.7 35 135-169 204-238 (244)
67 PF08139 LPAM_1: Prokaryotic m 32.0 46 0.001 16.5 1.7 15 2-16 7-21 (25)
68 PRK15036 hydroxyisourate hydro 31.9 1.9E+02 0.0041 20.6 8.1 61 43-108 28-95 (137)
69 PF11079 YqhG: Bacterial prote 31.1 83 0.0018 25.0 3.9 31 139-169 180-210 (260)
70 PRK14745 RepA leader peptide T 30.8 72 0.0016 15.6 2.2 16 1-16 1-16 (26)
71 PRK13169 DNA replication intia 30.7 91 0.002 21.4 3.7 28 136-163 9-36 (110)
72 PF01606 Arteri_env: Arterivir 30.5 2.3E+02 0.0051 21.2 6.2 52 1-52 1-55 (214)
73 PF07680 DoxA: TQO small subun 30.3 2E+02 0.0044 20.4 6.0 44 62-106 46-98 (133)
74 PF01166 TSC22: TSC-22/dip/bun 30.0 1.3E+02 0.0029 18.2 4.5 33 132-164 11-43 (59)
75 PF14257 DUF4349: Domain of un 30.0 61 0.0013 25.4 3.1 29 137-165 164-192 (262)
76 PF13464 DUF4115: Domain of un 29.9 1.4E+02 0.0031 18.5 5.8 41 64-106 8-48 (77)
77 TIGR02962 hdxy_isourate hydrox 29.6 1.9E+02 0.0041 19.8 6.1 32 77-108 34-70 (112)
78 TIGR02542 B_forsyth_147 Bacter 29.0 33 0.00071 23.9 1.2 14 94-107 115-128 (145)
79 TIGR02052 MerP mercuric transp 27.9 75 0.0016 19.3 2.8 17 5-21 4-20 (92)
80 smart00338 BRLZ basic region l 27.7 94 0.002 18.6 3.1 38 132-169 23-60 (65)
81 COG3937 Uncharacterized conser 27.6 87 0.0019 21.4 3.0 28 131-158 79-106 (108)
82 PF05440 MtrB: Tetrahydrometha 27.4 57 0.0012 21.9 2.1 23 135-157 30-52 (97)
83 PF04508 Pox_A_type_inc: Viral 27.1 87 0.0019 15.2 2.4 17 137-153 3-19 (23)
84 PF15141 DUF4574: Domain of un 27.1 67 0.0014 21.0 2.3 29 2-31 4-32 (84)
85 PF02083 Urotensin_II: Urotens 27.0 23 0.0005 14.3 0.1 8 29-36 2-9 (12)
86 PF00354 Pentaxin: Pentaxin fa 26.7 2.8E+02 0.006 20.8 7.1 68 31-108 28-97 (195)
87 cd05860 Ig4_SCFR Fourth immuno 26.6 1.1E+02 0.0024 20.6 3.5 25 93-121 75-99 (101)
88 PF11325 DUF3127: Domain of un 26.6 1.9E+02 0.0041 18.8 4.7 32 89-120 25-66 (84)
89 PF07172 GRP: Glycine rich pro 26.5 42 0.00091 22.4 1.4 8 4-11 5-12 (95)
90 PF10779 XhlA: Haemolysin XhlA 26.1 1.7E+02 0.0036 18.1 4.0 26 138-163 30-55 (71)
91 PF14155 DUF4307: Domain of un 26.0 2.2E+02 0.0047 19.4 7.8 46 30-80 35-80 (112)
92 PRK10351 holo-(acyl carrier pr 26.0 1.7E+02 0.0036 22.0 4.7 54 70-133 45-98 (187)
93 PLN00115 pollen allergen group 25.9 1.1E+02 0.0024 21.2 3.5 28 3-30 4-34 (118)
94 PF08842 Mfa2: Fimbrillin-A as 25.1 1.1E+02 0.0025 23.5 3.9 43 63-105 29-77 (283)
95 PRK10803 tol-pal system protei 24.8 1.1E+02 0.0025 24.1 3.8 34 135-168 61-94 (263)
96 PF05404 TRAP-delta: Transloco 24.4 3E+02 0.0065 20.4 8.0 13 95-107 93-105 (167)
97 PRK03757 hypothetical protein; 24.4 3E+02 0.0066 20.5 6.0 52 1-52 1-56 (191)
98 PRK10260 L,D-transpeptidase; P 24.0 83 0.0018 25.7 2.9 34 3-36 6-39 (306)
99 COG1382 GimC Prefoldin, chaper 23.9 77 0.0017 22.1 2.3 39 133-171 68-106 (119)
100 PF11083 Streptin-Immun: Lanti 23.9 2E+02 0.0043 19.4 4.2 37 134-170 51-87 (99)
101 PF11974 MG1: Alpha-2-macroglo 23.9 2.2E+02 0.0048 18.7 6.2 40 63-102 29-69 (97)
102 PF13956 Ibs_toxin: Toxin Ibs, 22.9 51 0.0011 15.0 0.9 11 2-12 2-12 (19)
103 TIGR01837 PHA_granule_1 poly(h 22.9 52 0.0011 22.7 1.4 25 131-155 92-116 (118)
104 cd09011 Glo_EDI_BRP_like_23 Th 22.7 76 0.0016 20.9 2.2 14 65-78 102-115 (120)
105 cd05864 Ig2_VEGFR-2 Second imm 22.4 1.5E+02 0.0032 18.0 3.3 25 93-119 44-68 (70)
106 PF12761 End3: Actin cytoskele 22.3 1.7E+02 0.0037 22.3 4.1 34 134-170 159-192 (195)
107 PF03487 IL13: Interleukin-13; 22.3 1.2E+02 0.0026 16.8 2.4 18 141-158 26-43 (43)
108 PF08946 Osmo_CC: Osmosensory 22.2 1.7E+02 0.0037 16.7 4.5 29 134-162 11-39 (46)
109 COG5567 Predicted small peripl 21.6 77 0.0017 19.0 1.7 15 4-18 3-17 (58)
110 cd08356 Glo_EDI_BRP_like_17 Th 21.6 78 0.0017 20.9 2.1 15 64-78 96-110 (113)
111 TIGR02338 gimC_beta prefoldin, 21.4 2.1E+02 0.0047 19.2 4.2 34 135-168 67-100 (110)
112 PF13584 BatD: Oxygen toleranc 21.3 3.6E+02 0.0078 23.1 6.5 66 37-104 23-94 (484)
113 PF09116 gp45-slide_C: gp45 sl 21.1 2.3E+02 0.0049 19.6 4.2 40 67-106 26-73 (112)
114 PF06059 DUF930: Domain of Unk 20.6 1.8E+02 0.0038 19.7 3.5 30 94-124 59-88 (101)
115 smart00704 ZnF_CDGSH CDGSH-typ 20.1 1.1E+02 0.0024 16.6 2.0 19 88-106 4-22 (38)
116 PHA02102 hypothetical protein 20.1 86 0.0019 19.3 1.7 26 137-162 7-32 (72)
No 1
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-37 Score=227.38 Aligned_cols=164 Identities=49% Similarity=0.838 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHhhcceeEEEEEeCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeecc
Q 030705 4 LTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRV 83 (173)
Q Consensus 4 ~~~~~~~~l~ll~~~~~al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~ 83 (173)
.+..+++++++++..+.|+.|+|+++.++|+.|++.+|..+.|.|.+.++.-+. .+.+.+.|.||.|+.+++.++.
T Consensus 5 ~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~----~~~~~~~Vts~~G~~~~~~env 80 (210)
T KOG1691|consen 5 CLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDH----SHKLSVKVTSPYGNNLHSKENV 80 (210)
T ss_pred hHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCc----cceEEEEEEcCCCceeehhhcc
Confidence 345556666677789999999999999999999999999999999999764211 1589999999999999999999
Q ss_pred ccceEEEEeeccCceeEEEEecCC--CCCceEEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 030705 84 DSGQFAFTAAEAGDYMACFWAVDH--SPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYL 161 (173)
Q Consensus 84 ~~g~f~f~~~~~G~y~iCf~n~~~--~~~~~~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~ 161 (173)
++|+|+|++.++|.|.+||.+... .+.....|+||++.|.+++||+++||+++++|+|.++++|++.++.|+++..|+
T Consensus 81 ~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YL 160 (210)
T KOG1691|consen 81 TKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYL 160 (210)
T ss_pred ccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999433 234569999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccC
Q 030705 162 RERRNAGAEP 171 (173)
Q Consensus 162 r~re~~~r~~ 171 (173)
|.||++||++
T Consensus 161 r~REeemr~~ 170 (210)
T KOG1691|consen 161 REREEEMRNT 170 (210)
T ss_pred HHHHHHHHhh
Confidence 9999999986
No 2
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=217.84 Aligned_cols=164 Identities=21% Similarity=0.329 Sum_probs=146.7
Q ss_pred HHHHHHHHHHhhcceeEEEEEeCCccceeeeeccCCcEEEEEEEEE--cCCCCCC-CCCCceEEEEEeCCCCC--eEEee
Q 030705 6 LTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVV--NPNDGHP-LPESHKLTVRVTSAYGN--SYHYA 80 (173)
Q Consensus 6 ~~~~~~l~ll~~~~~al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~--~~~~~~~-~~~~~~v~v~I~dp~g~--~l~~~ 80 (173)
+.++++|++|+..+.|++|++..+++|||++++|++++++|+|.+. +...+.| ...+.++.|.|+||.++ +|.++
T Consensus 5 ~~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q 84 (215)
T KOG1690|consen 5 MRLLLLLLLLATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQ 84 (215)
T ss_pred HHHHHHHHHHHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEee
Confidence 6778888888999999999999999999999999999999999886 4433333 23478999999999877 89999
Q ss_pred eccccceEEEEeeccCceeEEEEecCCC--CCceEEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHHHHHHHHH
Q 030705 81 DRVDSGQFAFTAAEAGDYMACFWAVDHS--PQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEM 158 (173)
Q Consensus 81 ~~~~~g~f~f~~~~~G~y~iCf~n~~~~--~~~~~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~~I~~~q 158 (173)
+..++|+|+|++..+|+|+||+.+..+. .++..+|.+|+++|..+.+|+ ..+++++.++.+++.|.+++..|+.||
T Consensus 85 ~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a--~~ke~~k~l~~Rv~~L~~~~~~IrkEQ 162 (215)
T KOG1690|consen 85 QYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDA--QIKETDKLLEGRVRQLNSRLESIRKEQ 162 (215)
T ss_pred cCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998774 568899999999999998876 467888889999999999999999999
Q ss_pred HHHHHHHHhhccC
Q 030705 159 FYLRERRNAGAEP 171 (173)
Q Consensus 159 ~y~r~re~~~r~~ 171 (173)
+|+|+||+++|++
T Consensus 163 ~~~R~RE~~FR~t 175 (215)
T KOG1690|consen 163 NLQREREETFRDT 175 (215)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999987
No 3
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-34 Score=210.61 Aligned_cols=158 Identities=20% Similarity=0.389 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHhhcceeEEEEEeCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccc
Q 030705 5 TLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD 84 (173)
Q Consensus 5 ~~~~~~~l~ll~~~~~al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~ 84 (173)
+..+++++++|+..+.++.+.+++++++||+|.+.+|+.+.++|+|.+++ .+++++.|.+|.|+.++..+..+
T Consensus 4 ~~~~~vll~~L~~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg-------~~~vd~~I~gP~~~~i~~~~~~s 76 (201)
T KOG1692|consen 4 LASVIVLLGLLFISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGG-------FLGVDVEITGPDGKIIHKGKRES 76 (201)
T ss_pred hhhHHHHHHHHHHHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecCC-------ccceeEEEECCCCchhhhccccc
Confidence 45566666665566999999999999999999999999999999999875 67999999999999999888888
Q ss_pred cceEEEEeeccCceeEEEEecCCCCCceEEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 85 SGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164 (173)
Q Consensus 85 ~g~f~f~~~~~G~y~iCf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~r 164 (173)
.|+|+|+++.+|.|++||+|..+. ..++.|.|++++|.-.. ++..++..+.++++..|++|...|.+++.||.|+..|
T Consensus 77 sgk~tF~a~~~G~Y~fCF~N~~s~-mtpk~V~F~ihvg~~~~-~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~R 154 (201)
T KOG1692|consen 77 SGKYTFTAPKKGTYTFCFSNKMST-MTPKTVMFTIHVGHAPQ-RDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEAR 154 (201)
T ss_pred CceEEEEecCCceEEEEecCCCCC-CCceEEEEEEEEeeccc-cchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999986 78999999999998654 4457889999999999999999999999999999999
Q ss_pred HHhhccC
Q 030705 165 RNAGAEP 171 (173)
Q Consensus 165 e~~~r~~ 171 (173)
|++||++
T Consensus 155 er~Hr~~ 161 (201)
T KOG1692|consen 155 ERIHRNT 161 (201)
T ss_pred HHHHHHh
Confidence 9999975
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-30 Score=192.00 Aligned_cols=155 Identities=19% Similarity=0.324 Sum_probs=135.2
Q ss_pred HHHHHHHhhcceeEEEEEeCCccceeeeeccCCcE-EEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccce
Q 030705 9 VLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSM-TVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQ 87 (173)
Q Consensus 9 ~~~l~ll~~~~~al~f~l~~~~~~Cf~e~~~~~~~-v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g~ 87 (173)
+++|++++..+..++|+||.+.++|||+++++++. .+..|.|..|| +.+|++.|++|+|+++++..++..+.
T Consensus 11 ~~lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG-------~fDVD~~I~aPdgkvI~~~~kk~~~~ 83 (209)
T KOG1693|consen 11 LLLLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG-------HFDVDYDIEAPDGKVIYSEKKKRYDS 83 (209)
T ss_pred HHHHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC-------ceeeEEEEECCCCCEEeecccccccc
Confidence 44444555557899999999999999999999755 99999999886 78999999999999999999999999
Q ss_pred EEEEeeccCceeEEEEecCCCCCceEEEEEEEeecccccCccch-hccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 88 FAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNV-AKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRN 166 (173)
Q Consensus 88 f~f~~~~~G~y~iCf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~-a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~ 166 (173)
|.|++...|+|.+||+|..+. +..+.|.++++.|.+..-..+. +++..++.|+..+..+..+|+.|.+.|.|+|.||+
T Consensus 84 ~~f~ae~~G~Y~fCFsN~fst-f~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~ 162 (209)
T KOG1693|consen 84 FLFKAEGKGEYTFCFSNEFST-FSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREA 162 (209)
T ss_pred EEEEEecceEEEEEecCcccc-ccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 8889999999999754322222 23457889999999999999999999999999999
Q ss_pred hhccC
Q 030705 167 AGAEP 171 (173)
Q Consensus 167 ~~r~~ 171 (173)
+.|.|
T Consensus 163 rn~~t 167 (209)
T KOG1693|consen 163 RNRST 167 (209)
T ss_pred cCccc
Confidence 99976
No 5
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=99.95 E-value=3e-29 Score=186.84 Aligned_cols=145 Identities=30% Similarity=0.504 Sum_probs=0.0
Q ss_pred eEEEEEeCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEe--CCCCCeEEeeeccc-cceEEEEeeccCc
Q 030705 21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVT--SAYGNSYHYADRVD-SGQFAFTAAEAGD 97 (173)
Q Consensus 21 al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~--dp~g~~l~~~~~~~-~g~f~f~~~~~G~ 97 (173)
|++|.|+||+++||++++++++.+.|+|.+.+++ .+..+.+.|+ +|+|+.+++..... +|+|+|++.++|.
T Consensus 1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~------~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~ 74 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG------GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGE 74 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc------ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCC
Confidence 6899999999999999999999999999999774 1468999999 55668898875554 5799999999999
Q ss_pred eeEEEEecCCCCCce-EEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 030705 98 YMACFWAVDHSPQTT-VTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAEPC 172 (173)
Q Consensus 98 y~iCf~n~~~~~~~~-~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~~r~~~ 172 (173)
|++||.|..+. ..+ +.|+|++++|.++.|+.+.++++++++++..|++|...++.|+++|+|++.||+++|++.
T Consensus 75 y~iCf~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~ 149 (183)
T PF01105_consen 75 YQICFDNSSSS-FSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLN 149 (183)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEEEcCCCC-ccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886 444 999999999987777788899999999999999999999999999999999999999863
No 6
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8e-25 Score=163.04 Aligned_cols=146 Identities=16% Similarity=0.278 Sum_probs=126.2
Q ss_pred ceeEEEEEeCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCce
Q 030705 19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDY 98 (173)
Q Consensus 19 ~~al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y 98 (173)
...++|+||||+++|||+.++.+..+..+|.|.+| +| +.+|.+++.+|.|.++.+.+.+..|.+.+.+++.|.|
T Consensus 33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~G-----Dl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY 106 (236)
T KOG3287|consen 33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-AG-----DLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDY 106 (236)
T ss_pred ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-CC-----ccceeeEEeCCCccEEeecccccCceeEeeccCCcce
Confidence 45689999999999999999999999999999988 22 6899999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCceEEEEEEEee---cccc---cCccchhcc-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030705 99 MACFWAVDHSPQTTVTIDFDWRT---GVQA---KDWSNVAKK-----GSVDVMELELKKLYDTVSSIHQEMFYLRERRNA 167 (173)
Q Consensus 99 ~iCf~n~~~~~~~~~~V~f~~~~---g~~~---~d~~~~a~~-----~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~ 167 (173)
++||+|+.|. ++.+.|+|++-. |+.. ..|..-++. .+|+.++..+..++.++.....-|..+|.||+|
T Consensus 107 ~~CfDNsFS~-fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaR 185 (236)
T KOG3287|consen 107 QVCFDNSFST-FSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREAR 185 (236)
T ss_pred EEEEcCcccc-ccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999997 889999999932 3221 123222221 368899999999999999999999999999999
Q ss_pred hccC
Q 030705 168 GAEP 171 (173)
Q Consensus 168 ~r~~ 171 (173)
.|+.
T Consensus 186 Dr~L 189 (236)
T KOG3287|consen 186 DRNL 189 (236)
T ss_pred hHHH
Confidence 9975
No 7
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=95.51 E-value=0.41 Score=31.69 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=40.8
Q ss_pred CCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec---cccceEEEEee--c---cCceeEEEEec
Q 030705 40 SNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR---VDSGQFAFTAA--E---AGDYMACFWAV 105 (173)
Q Consensus 40 ~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~---~~~g~f~f~~~--~---~G~y~iCf~n~ 105 (173)
.|+.|.+.--+.+.+.....+.+..+.+.|+||+|+.+..+.. ...|.+++... . .|.|++=+...
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 4666766655444431123345679999999999999977654 23554444432 2 47787777764
No 8
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=92.38 E-value=2.1 Score=28.10 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=32.0
Q ss_pred CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecC
Q 030705 62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVD 106 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 106 (173)
+..+.+.|.+|+|+.+--+ .+...| ..+|++...|.|.+.+.-..
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 4689999999999654322 223334 56788888899988887654
No 9
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=90.73 E-value=1.2 Score=29.84 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=13.7
Q ss_pred ccceEEEEeeccCceeE-EEEecC
Q 030705 84 DSGQFAFTAAEAGDYMA-CFWAVD 106 (173)
Q Consensus 84 ~~g~f~f~~~~~G~y~i-Cf~n~~ 106 (173)
....+.|++.+.|+|.+ |=.+..
T Consensus 74 ~~~~~~f~~~~~G~y~~~C~~~~~ 97 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEFYCTMHPN 97 (104)
T ss_dssp -EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCc
Confidence 34578888899999987 865443
No 10
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=90.69 E-value=1.8 Score=27.72 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=29.0
Q ss_pred cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec--cccceEEEEe
Q 030705 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR--VDSGQFAFTA 92 (173)
Q Consensus 42 ~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~--~~~g~f~f~~ 92 (173)
....+.|.+... ...+.+.|+|.+|++|.+... .+.|.+.|+-
T Consensus 12 ~~~~~~~~l~~~--------a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~W 56 (81)
T PF13860_consen 12 TKGSIEYTLPED--------ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTW 56 (81)
T ss_dssp CEEEEEEEECSS--------CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE
T ss_pred EEEEEEEeCCCc--------ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEE
Confidence 577888888654 357999999999999986432 2345555543
No 11
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=90.19 E-value=2 Score=26.53 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=40.8
Q ss_pred ceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccc-----cceEEEEeeccCceeEEE
Q 030705 32 KCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD-----SGQFAFTAAEAGDYMACF 102 (173)
Q Consensus 32 ~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~-----~g~f~f~~~~~G~y~iCf 102 (173)
..|.-+++++..+.+. +... ..+..+.+.+++|..+....... .....|++...|.|.+=+
T Consensus 3 D~y~f~v~ag~~l~i~--l~~~--------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 3 DYYSFTVPAGGTLTID--LSGG--------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEEESTTEEEEEE--ECET--------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEEcCCCEEEEE--EcCC--------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 3567778888777655 4333 22677889999988776533222 345778888889997744
No 12
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=88.89 E-value=2 Score=29.01 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=31.2
Q ss_pred ceEEEEEeCCCCCeEEeeeccc--cceEEEEe--eccCceeEEEEecCC
Q 030705 63 HKLTVRVTSAYGNSYHYADRVD--SGQFAFTA--AEAGDYMACFWAVDH 107 (173)
Q Consensus 63 ~~v~v~I~dp~g~~l~~~~~~~--~g~f~f~~--~~~G~y~iCf~n~~~ 107 (173)
..+.++|+|..|+++|+..... ....++.. ...|.|.+=+.+...
T Consensus 48 ~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 48 GDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 4799999999999999875433 33455555 457999999998865
No 13
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=86.78 E-value=8.2 Score=26.60 Aligned_cols=79 Identities=11% Similarity=0.311 Sum_probs=46.8
Q ss_pred CccceeeeeccC-CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCC-CCeEEee--eccc-cceEEEEe---eccCceeE
Q 030705 29 AHTKCIAEDIKS-NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAY-GNSYHYA--DRVD-SGQFAFTA---AEAGDYMA 100 (173)
Q Consensus 29 ~~~~Cf~e~~~~-~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~-g~~l~~~--~~~~-~g~f~f~~---~~~G~y~i 100 (173)
+.-.|..+++.. +..++ |.+ +|. .--|.|+|.. ..++|+. .++- ...|+... +...+|-+
T Consensus 37 ~rLFcVs~Die~L~aEv~--f~m-DGe---------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V 104 (132)
T PF15417_consen 37 GRLFCVSEDIEALDAEVY--FQM-DGE---------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVV 104 (132)
T ss_pred ceEEEEecchheeeeEEE--EEE-cCc---------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEE
Confidence 356788888765 44443 333 443 4456788876 4577764 2222 33455544 45689999
Q ss_pred EEEecCCCCCceEEEEEEEeec
Q 030705 101 CFWAVDHSPQTTVTIDFDWRTG 122 (173)
Q Consensus 101 Cf~n~~~~~~~~~~V~f~~~~g 122 (173)
||....= ..-.|.+.|+.+
T Consensus 105 ~ftGtkI---nhAvv~vtFeS~ 123 (132)
T PF15417_consen 105 CFTGTKI---NHAVVKVTFESE 123 (132)
T ss_pred EEeccEe---eeEEEEEEecch
Confidence 9998753 345556556443
No 14
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=83.75 E-value=6.6 Score=30.49 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=39.4
Q ss_pred cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec--cccceEEEEe---------eccCceeEEEEec
Q 030705 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR--VDSGQFAFTA---------AEAGDYMACFWAV 105 (173)
Q Consensus 42 ~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~--~~~g~f~f~~---------~~~G~y~iCf~n~ 105 (173)
..+.+.|...+. ...+.+.|+|..|++|++-.- .+.|.+.|+- -.+|.|.+=+...
T Consensus 113 ~~~~~~~~l~~~--------a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 113 GTTPFGVELPSA--------ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred CceEEEEEcCCC--------CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 356666666543 347999999999999986433 3477777743 2369999988755
No 15
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=83.61 E-value=9.7 Score=24.84 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=29.5
Q ss_pred CceEEEEEeCCCCC----eE-Eeeeccccc--eEEEEeeccCceeEEEEecC
Q 030705 62 SHKLTVRVTSAYGN----SY-HYADRVDSG--QFAFTAAEAGDYMACFWAVD 106 (173)
Q Consensus 62 ~~~v~v~I~dp~g~----~l-~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 106 (173)
...+.+.|.+|++. .+ ..-.+...| ..+|++...|.|.+++.-..
T Consensus 41 ~~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 41 GDEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKING 92 (101)
T ss_dssp SSEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEESS
T ss_pred CceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEECC
Confidence 34788999999886 33 222223344 46777888888888777643
No 16
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=82.38 E-value=18 Score=28.73 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=40.2
Q ss_pred cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEeec---------cCceeEEEEecC
Q 030705 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAAE---------AGDYMACFWAVD 106 (173)
Q Consensus 42 ~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~--~~~~g~f~f~~~~---------~G~y~iCf~n~~ 106 (173)
..+.+.|.+... ...+.+.|+|..|++|+.-. ....|.+.|+-.. .|.|.|=+....
T Consensus 128 ~~~~~~~~l~~~--------a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~~ 195 (259)
T PRK12812 128 ELIALKLYFPED--------SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYNN 195 (259)
T ss_pred ceeEEEEecCCc--------CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEEc
Confidence 356666666443 34799999999999997653 3346777776644 699999887543
No 17
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=82.26 E-value=5.3 Score=25.02 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecC
Q 030705 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD 106 (173)
Q Consensus 64 ~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~ 106 (173)
++.|.+.+..+...........|+|.|.--..|.|.+=+....
T Consensus 16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g 58 (82)
T PF13620_consen 16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPG 58 (82)
T ss_dssp T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTT
T ss_pred CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECC
Confidence 7888899888887777677789999999767799999887654
No 18
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=81.57 E-value=3.9 Score=24.96 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=35.8
Q ss_pred eEEEEEeCCCCCeEEe--eeccccceEEEEeeccCceeEEEEecCC
Q 030705 64 KLTVRVTSAYGNSYHY--ADRVDSGQFAFTAAEAGDYMACFWAVDH 107 (173)
Q Consensus 64 ~v~v~I~dp~g~~l~~--~~~~~~g~f~f~~~~~G~y~iCf~n~~~ 107 (173)
++.|.|++.++..+.. ......|.+.|.--..|.|.+=......
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~ 48 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD 48 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence 5788899998887775 5556789999999999999998888544
No 19
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.31 E-value=2.9 Score=31.18 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=40.1
Q ss_pred CceeEEEEecCCCCCceEEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHHH
Q 030705 96 GDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVS 152 (173)
Q Consensus 96 G~y~iCf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~ 152 (173)
-.-.+|+.|.++. ..--++.|+++....+.|.+++......+.++.+|+.+..++.
T Consensus 81 qklvlvI~~~~tg-EvlErWqFnie~~~~~~d~~na~~~k~~~~iq~EIraviRQIt 136 (203)
T KOG3285|consen 81 QKLVLVITSKHTG-EVLERWQFNIETENTASDGQNATRVKDLKRIQNEIRAVIRQIT 136 (203)
T ss_pred ceEEEEEEecccc-cchhheeeeeeeeccccCcccccchhHHHHHHHHHHHHHHHHh
Confidence 3456799988875 5567889999988877776665566667777777776665554
No 20
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=81.00 E-value=9 Score=29.73 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=38.8
Q ss_pred CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEe-------eccCceeEEEEecC
Q 030705 41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTA-------AEAGDYMACFWAVD 106 (173)
Q Consensus 41 ~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~-------~~~G~y~iCf~n~~ 106 (173)
+..+.+.|.+.+. ...+.+.|+|.+|++|+...- ..| .|.+.- -..|.|.|=+....
T Consensus 110 g~~~~~~~~l~~~--------a~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~ 175 (223)
T PRK12813 110 GTPVTISPNPAAD--------ADKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESYS 175 (223)
T ss_pred CceeEEEEeccCC--------CceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEEe
Confidence 4466777777544 358999999999999976543 334 444441 22599999887663
No 21
>PHA03376 BARF1; Provisional
Probab=80.85 E-value=23 Score=27.07 Aligned_cols=96 Identities=9% Similarity=0.115 Sum_probs=48.2
Q ss_pred ChhhHHHHHHHHHHHhhcceeEEEEEeCC-ccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEe
Q 030705 1 MIRLTLTLVLVIGILSSTSQSLRFEIQSA-HTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79 (173)
Q Consensus 1 ~~~~~~~~~~~l~ll~~~~~al~f~l~~~-~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~ 79 (173)
|.|.++++|++..++ ..+.++.-.+... .--|-+--......+.+...=..++ +..+.+.+- .|++++.
T Consensus 1 ~~~~~~~Ll~La~l~-~sg~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~-------~~~VvL~~~--ggdVv~~ 70 (221)
T PHA03376 1 MARFIAQLLLLASCV-AAGQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPG-------EEQVLIGRM--HHDVIFI 70 (221)
T ss_pred ChhHHHHHHHHHHHh-ccCcchhheeCCcEEEEecccCccCCCceEEEEEecCCC-------CCCEEEEEc--CCeeeee
Confidence 678888888755554 4444555555443 2346666444445554443222221 223443332 1222221
Q ss_pred eecccc---------ceEEEE-----eeccCceeEEEEecCC
Q 030705 80 ADRVDS---------GQFAFT-----AAEAGDYMACFWAVDH 107 (173)
Q Consensus 80 ~~~~~~---------g~f~f~-----~~~~G~y~iCf~n~~~ 107 (173)
+ .+-. |+++.. +..+|.|.-+|.-...
T Consensus 71 Q-mEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~ 111 (221)
T PHA03376 71 E-WPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGET 111 (221)
T ss_pred e-eccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCC
Confidence 1 1122 444443 4568999999987654
No 22
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=79.17 E-value=12 Score=30.25 Aligned_cols=60 Identities=8% Similarity=-0.046 Sum_probs=39.1
Q ss_pred cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeecc----ccceEEEEe---------eccCceeEEEEec
Q 030705 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRV----DSGQFAFTA---------AEAGDYMACFWAV 105 (173)
Q Consensus 42 ~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~----~~g~f~f~~---------~~~G~y~iCf~n~ 105 (173)
..+.+.|.+..+.. .+...+.+.|+|..|++|++-.-. ..|.+.|+- -..|.|.|=+...
T Consensus 149 ~~~~~~~~l~~~~~----~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~ 221 (295)
T PRK05842 149 NKLSFSLFFDEKID----ASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN 221 (295)
T ss_pred CceEEEEecccccc----ccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 35566666643211 024589999999999999865432 347777773 2269999988654
No 23
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=78.57 E-value=12 Score=22.41 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=32.8
Q ss_pred CCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecCCC---CCceEEEEEEE
Q 030705 61 ESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS---PQTTVTIDFDW 119 (173)
Q Consensus 61 ~~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~~---~~~~~~V~f~~ 119 (173)
.+......+.+.+++-+....... .++|+...+|.|.|-+...... ......+.|.|
T Consensus 6 ~~~~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 6 ENIRYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp TTEEEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred CceEEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 345666667666665444322211 8999999999999988876543 12225555544
No 24
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=75.91 E-value=3.9 Score=29.08 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=23.3
Q ss_pred EEEeeccCceeEEEEecCCCCCceEEEEEEE
Q 030705 89 AFTAAEAGDYMACFWAVDHSPQTTVTIDFDW 119 (173)
Q Consensus 89 ~f~~~~~G~y~iCf~n~~~~~~~~~~V~f~~ 119 (173)
+++....|.|-++|+|+.|- ...|++.+.+
T Consensus 104 s~~c~~~GvYvLkFDNSYS~-~rsK~l~Y~V 133 (136)
T PF13897_consen 104 SHTCPGPGVYVLKFDNSYSW-FRSKKLYYRV 133 (136)
T ss_pred EEECCCCeEEEEEeeCccee-EEeeEEEEEE
Confidence 44567889999999999885 5667777655
No 25
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=75.77 E-value=14 Score=23.81 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=14.0
Q ss_pred CCceEEEEEeCCCCCeEEeeec
Q 030705 61 ESHKLTVRVTSAYGNSYHYADR 82 (173)
Q Consensus 61 ~~~~v~v~I~dp~g~~l~~~~~ 82 (173)
+++..++.|+|+.|+.|+.+..
T Consensus 22 sgq~~D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 22 SGQRYDFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp SS--EEEEEE-TT--EEEETTT
T ss_pred CCCEEEEEEECCCCCEEEEecC
Confidence 4679999999999999997643
No 26
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=75.30 E-value=32 Score=25.71 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=39.5
Q ss_pred ccceeeeec--cCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEe-eeccccceEEEEe---eccCceeEEEE
Q 030705 30 HTKCIAEDI--KSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY-ADRVDSGQFAFTA---AEAGDYMACFW 103 (173)
Q Consensus 30 ~~~Cf~e~~--~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~-~~~~~~g~f~f~~---~~~G~y~iCf~ 103 (173)
-.-+|+-+- .+++.+.+.|... ....+.+.+|+|+.+.. ..+.......+.. .+.|...+.+.
T Consensus 17 ~~gtv~ID~tvG~~T~f~v~w~~~-----------~~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~ 85 (179)
T PF09315_consen 17 FTGTVYIDSTVGNNTVFTVTWQNS-----------SPPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSIT 85 (179)
T ss_pred EEeEEEECCCCCCCeEEEEEECCC-----------CCceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEe
Confidence 344555553 3445665554332 14567799999998865 2233333333333 45798888887
Q ss_pred ecCC
Q 030705 104 AVDH 107 (173)
Q Consensus 104 n~~~ 107 (173)
|..+
T Consensus 86 ~~~~ 89 (179)
T PF09315_consen 86 NTSS 89 (179)
T ss_pred cCCC
Confidence 7665
No 27
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=75.06 E-value=28 Score=26.97 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=33.9
Q ss_pred CceEEEEEeCCCCCeEEeee--ccccceEEEEeec---------cCceeEEEEecC
Q 030705 62 SHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAAE---------AGDYMACFWAVD 106 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l~~~~--~~~~g~f~f~~~~---------~G~y~iCf~n~~ 106 (173)
...+.+.|+|.+|++|+.-. ..+.|.+.|+-.. .|.|.|-+....
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~~ 176 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQTD 176 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEEe
Confidence 45899999999999998653 3446777777643 599999997543
No 28
>PRK02710 plastocyanin; Provisional
Probab=73.74 E-value=26 Score=24.06 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=12.6
Q ss_pred cceEEEEeeccCceeE-EE
Q 030705 85 SGQFAFTAAEAGDYMA-CF 102 (173)
Q Consensus 85 ~g~f~f~~~~~G~y~i-Cf 102 (173)
...++++....|.|.+ |-
T Consensus 87 g~t~~~tF~~~G~y~y~C~ 105 (119)
T PRK02710 87 GESWEETFSEAGTYTYYCE 105 (119)
T ss_pred CCEEEEEecCCEEEEEEcC
Confidence 3356666666999976 85
No 29
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=73.39 E-value=39 Score=30.63 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=40.0
Q ss_pred CceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEec--CCC-C-CceEEEEEEEe
Q 030705 62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAV--DHS-P-QTTVTIDFDWR 120 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~--~~~-~-~~~~~V~f~~~ 120 (173)
+....+.|+. +|+.+...+-.....+.|++...|.|++=+... .+. . -..+.|+|++.
T Consensus 415 ~~lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 415 NLRYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred eEEEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 4555556654 666676666677899999999999998855544 343 1 24577777774
No 30
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=72.89 E-value=41 Score=26.17 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=33.2
Q ss_pred CceEEEEEeCCCCCeEEeee--ccccceEEEEee---------ccCceeEEEEecC
Q 030705 62 SHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFWAVD 106 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l~~~~--~~~~g~f~f~~~---------~~G~y~iCf~n~~ 106 (173)
...+.+.|+|..|++|+.-. ..+.|.+.|+-. ..|.|+|=+....
T Consensus 128 a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~~ 183 (230)
T PRK12633 128 ATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSASD 183 (230)
T ss_pred CcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEEe
Confidence 35799999999999998643 334677777642 3589999887643
No 31
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=71.82 E-value=26 Score=23.25 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=23.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 133 KKGSVDVMELELKKLYDTVSSIHQEMFYLRERRN 166 (173)
Q Consensus 133 ~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~ 166 (173)
....+..++.+++.++..+..+..+..-++.+..
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777778888777777777766665544
No 32
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=68.12 E-value=65 Score=29.24 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=40.7
Q ss_pred CceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeE-EEEecCCC--C-CceEEEEEEE
Q 030705 62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMA-CFWAVDHS--P-QTTVTIDFDW 119 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~i-Cf~n~~~~--~-~~~~~V~f~~ 119 (173)
+.--.+.+.+++|.....+.-.....|++++..+|.|++ |.--...+ . .....+.|++
T Consensus 222 ~~LYKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~V 283 (667)
T PRK14081 222 TILYKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTV 283 (667)
T ss_pred eEEEEEEEECCCCCEEEecCccccceEEEEeCCCccEEEEEEEeccCcccccccceEEEEEE
Confidence 345566677888888877777889999999999999998 55444333 1 2335555655
No 33
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.85 E-value=49 Score=24.76 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=24.7
Q ss_pred eeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeC
Q 030705 34 IAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTS 71 (173)
Q Consensus 34 f~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~d 71 (173)
.-..+..|..+.++|.+...| ++...+|+|.|
T Consensus 30 l~~~~v~g~~v~V~~~iyN~G------~~~A~dV~l~D 61 (181)
T PF05753_consen 30 LNKYLVEGEDVTVTYTIYNVG------SSAAYDVKLTD 61 (181)
T ss_pred ccccccCCcEEEEEEEEEECC------CCeEEEEEEEC
Confidence 444566789999999999765 35678888988
No 34
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=67.82 E-value=45 Score=24.37 Aligned_cols=56 Identities=5% Similarity=0.041 Sum_probs=31.3
Q ss_pred eeEEEEEeCCccceeeeeccCCcEEEEEEEEEcCCCCCC------CCCCceEEEEEeCCCCC
Q 030705 20 QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHP------LPESHKLTVRVTSAYGN 75 (173)
Q Consensus 20 ~al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~------~~~~~~v~v~I~dp~g~ 75 (173)
....|++.||+.-=-.+..-..-.-..+|.+.+|..+-| .+++......|--|.|+
T Consensus 24 ~t~eFdvkP~G~~~t~~~~~~~~~C~FTYAaqGGTNEqW~msi~~s~d~~~~sC~I~RPqgk 85 (158)
T PF10572_consen 24 TTKEFDVKPGGVVHTFSESLGKYKCTFTYAAQGGTNEQWQMSIGLSDDNGHYSCIIWRPQGK 85 (158)
T ss_pred cceeEEecCCCEEEEeEEecCceEEEEEEEecCCccceEEEEeeecCCCCceEEEEECCCCC
Confidence 345789999976332333333556677888886653333 23344555555555554
No 35
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=67.46 E-value=17 Score=24.94 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=31.7
Q ss_pred ccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecC
Q 030705 30 HTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD 106 (173)
Q Consensus 30 ~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~ 106 (173)
...|=.-...+.-.+.+.|.+...- .+..+.+.|++..|..++.... ......+.....|.|++++.-..
T Consensus 25 g~~~~~~~~ge~~~i~i~~~~~~~i------~~~~~~~~i~~~~g~~v~~~~t-~~~~~~~~~~~~g~~~~~~~i~~ 94 (142)
T PF14524_consen 25 GEPTSSFESGEPIRIRIDYEVNEDI------DDPVFGFAIRDSDGQRVFGTNT-YDSGFPIPLSEGGTYEVTFTIPK 94 (142)
T ss_dssp EES-SSEETTSEEEEEEEEEESS-E------EEEEEEEEEEETT--EEEEEEH-HHHT--EEE-TT-EEEEEEEEE-
T ss_pred CCEeeEEeCCCEEEEEEEEEECCCC------CccEEEEEEEcCCCCEEEEECc-cccCccccccCCCEEEEEEEEcC
Confidence 3444443333334445555553221 2568999999999998875322 22223333332555555554443
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=63.64 E-value=68 Score=28.38 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=44.5
Q ss_pred EEEEeCCccceeeeeccC----CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEe----e-
Q 030705 23 RFEIQSAHTKCIAEDIKS----NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTA----A- 93 (173)
Q Consensus 23 ~f~l~~~~~~Cf~e~~~~----~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~----~- 93 (173)
.+++|++...|-|--.+. .-.-.|=|.|-=.. ..+..--+++..|.+..-.+ .......|.+ .
T Consensus 14 ~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s-----~rdY~Tf~Wa~~p~~~~~~s---~~~~~V~F~ayyLPk~ 85 (546)
T PF07888_consen 14 KSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSS-----TRDYYTFVWAPVPENYVEGS---AVNCQVQFQAYYLPKD 85 (546)
T ss_pred cccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCc-----hhheeeEEeeccCccccCCC---ccceEEEECcccCCCC
Confidence 467888888898876543 34556777774211 12456667787775421111 1122333333 2
Q ss_pred ccCceeEEEEecCCC
Q 030705 94 EAGDYMACFWAVDHS 108 (173)
Q Consensus 94 ~~G~y~iCf~n~~~~ 108 (173)
....|.||..+....
T Consensus 86 ~~e~YqfcYv~~~g~ 100 (546)
T PF07888_consen 86 DDEFYQFCYVDQKGE 100 (546)
T ss_pred CCCeEEEEEECCCcc
Confidence 346789999987653
No 37
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=63.06 E-value=58 Score=25.14 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=38.2
Q ss_pred cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEee------ccCceeEEEEecC
Q 030705 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA------EAGDYMACFWAVD 106 (173)
Q Consensus 42 ~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~--~~~~g~f~f~~~------~~G~y~iCf~n~~ 106 (173)
....+.|.+... ...+.+.|+|..|++ +... ....|.+.|+-. ..|.|.+-+....
T Consensus 110 ~~~~~~~~L~~~--------a~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~~ 173 (218)
T PRK09619 110 DPVAGRLTLKHP--------APTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSGS 173 (218)
T ss_pred CeeEEEEecCCc--------CcEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEeC
Confidence 456667776543 347999999999997 4332 234677777753 3699999887553
No 38
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=59.95 E-value=87 Score=24.96 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=19.9
Q ss_pred CceEEEEEeCCCCCeEEeeeccccce
Q 030705 62 SHKLTVRVTSAYGNSYHYADRVDSGQ 87 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l~~~~~~~~g~ 87 (173)
..+|-|+|..|...+...++...-|-
T Consensus 68 ~~dVVV~v~GP~~~v~vRrK~R~~GI 93 (261)
T TIGR02186 68 AYDIVVTLEGPRDDMVVRKKERVFGI 93 (261)
T ss_pred CccEEEEEeCCCCCeEEEEeeeeeeE
Confidence 46999999999999887665555553
No 39
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=59.93 E-value=5.2 Score=31.43 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHh--hcceeEEEEEeCCc
Q 030705 4 LTLTLVLVIGILS--STSQSLRFEIQSAH 30 (173)
Q Consensus 4 ~~~~~~~~l~ll~--~~~~al~f~l~~~~ 30 (173)
||++||++|+||. +.+.-++|+|-...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (243)
T PF05279_consen 11 SFFTWFLVLALLGVWSSVAVVMFDLVDYK 39 (243)
T ss_pred chHHHHHHHHHHHHHHhhHhhheehhhHH
Confidence 7899999988874 44555678776543
No 40
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=58.95 E-value=1.1e+02 Score=25.76 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=33.9
Q ss_pred CCCceEEEEEeCCCCCeEEeeeccccceEEEEe---eccCceeEEEEecCCCCCceEEEEEEE
Q 030705 60 PESHKLTVRVTSAYGNSYHYADRVDSGQFAFTA---AEAGDYMACFWAVDHSPQTTVTIDFDW 119 (173)
Q Consensus 60 ~~~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~---~~~G~y~iCf~n~~~~~~~~~~V~f~~ 119 (173)
|.+..+.+.++.|+|..........++...+.. .+-|.|++-.+--.+. .+...+.|.+
T Consensus 239 ~~s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~~Tt-~~GRe~~~~l 300 (374)
T TIGR03503 239 PGSLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTVFGTT-ITGRELQLTL 300 (374)
T ss_pred cccEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEEEEec-CCCCEEEEEc
Confidence 446788899999999844433344444444443 3459998865544432 2334444444
No 41
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=58.20 E-value=1.3e+02 Score=26.28 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=37.2
Q ss_pred CceEEEEEeCCCCCeEEeeecc-ccceEEEEee----ccCceeEEEEecCCCCC--ceEEEEEEE
Q 030705 62 SHKLTVRVTSAYGNSYHYADRV-DSGQFAFTAA----EAGDYMACFWAVDHSPQ--TTVTIDFDW 119 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l~~~~~~-~~g~f~f~~~----~~G~y~iCf~n~~~~~~--~~~~V~f~~ 119 (173)
+..|.++|+|..|+.+.+.... ..+..+|+.. +.|.|.+=.....+.+. ....++|.+
T Consensus 340 ~~~vta~V~d~~g~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~t~~dG~~~~q~~~~~~v 404 (478)
T PRK13211 340 DMNVEATVYNHDGEALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKAKPKDGELIKQQTLDFML 404 (478)
T ss_pred ceEEEEEEEcCCCCeeeeeeEEecCCceeEEEecccCCCceEEEEEEEEeCCCceeeeeeEEEEE
Confidence 6789999999999988764322 2333444443 46999998887765411 234455555
No 42
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=57.91 E-value=27 Score=23.99 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=25.1
Q ss_pred eCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee
Q 030705 27 QSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA 80 (173)
Q Consensus 27 ~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~ 80 (173)
..+...++..++.+|...-+..-...++ ..-.+.++|++|+|..+.+.
T Consensus 55 ~~~~~~~~tv~L~aG~yyPiRi~~~N~~------g~~~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 55 STGASKSVTVYLTAGTYYPIRIVYANGG------GPGSFDFSITDPDGTVHTDD 102 (113)
T ss_dssp SS-SEEEEEEEE-TT-BEEEEEEEEE-S------S-EEEEEEEEETT-S--B--
T ss_pred CCCCceEEEEEEECCcEEEEEEEEEcCC------CceEEEEEEECCCCcEEecC
Confidence 3445678888888886443333223222 14589999999999988754
No 43
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=55.24 E-value=74 Score=22.69 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=41.3
Q ss_pred eEEEEEeCCccceeeeeccCC---cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCC--eEE-e-----eec--cccce
Q 030705 21 SLRFEIQSAHTKCIAEDIKSN---SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGN--SYH-Y-----ADR--VDSGQ 87 (173)
Q Consensus 21 al~f~l~~~~~~Cf~e~~~~~---~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~--~l~-~-----~~~--~~~g~ 87 (173)
.|...|.+.++.----.++.- +..-++|.+..... ..+.+..|.+++.+.++- ... . ..- .....
T Consensus 26 ~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I--~VkaGD~Vtl~vtN~d~~~H~f~i~~~gis~~I~pGet~T 103 (135)
T TIGR03096 26 SFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEAL--VVKKGTPVKVTVENKSPISEGFSIDAYGISEVIKAGETKT 103 (135)
T ss_pred eeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEE--EECCCCEEEEEEEeCCCCccceEECCCCcceEECCCCeEE
Confidence 455566654544312223332 23345666653321 112355777777766542 111 1 111 12345
Q ss_pred EEEEeeccCceeE-EEEe
Q 030705 88 FAFTAAEAGDYMA-CFWA 104 (173)
Q Consensus 88 f~f~~~~~G~y~i-Cf~n 104 (173)
++|++.+.|.|.+ |=.-
T Consensus 104 itF~adKpG~Y~y~C~~H 121 (135)
T TIGR03096 104 ISFKADKAGAFTIWCQLH 121 (135)
T ss_pred EEEECCCCEEEEEeCCCC
Confidence 7899999999986 6443
No 44
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.42 E-value=47 Score=19.84 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 137 VDVMELELKKLYDTVSSIHQEMFYLRE 163 (173)
Q Consensus 137 l~~l~~~l~~l~~~l~~I~~~q~y~r~ 163 (173)
++.+|.++.+++..+..++++..-+++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~ 28 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555553
No 45
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.50 E-value=1.7e+02 Score=25.47 Aligned_cols=91 Identities=8% Similarity=0.038 Sum_probs=42.1
Q ss_pred EEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecCCC-CCceEEEEEEEe-----eccc-ccCccchhccCCcc
Q 030705 66 TVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS-PQTTVTIDFDWR-----TGVQ-AKDWSNVAKKGSVD 138 (173)
Q Consensus 66 ~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~f~~~-----~g~~-~~d~~~~a~~~~l~ 138 (173)
.|+|+ |+|-.|-... .+ .-..|.+.+.|.+.... ...+.+|+..=. .+.. ..++......+.+.
T Consensus 4 ~VTvy-~~~A~Vtr~~-------~v-~l~~G~~~i~i~~lp~~ld~~Slrv~~~g~~~~~~~~v~~~~~~~~~~~~~~~~ 74 (525)
T TIGR02231 4 TVTVY-PDRAEVTRSG-------KV-DLPSGVNELVLKNLPLTLQDDSLRVSGEGLAVASLVTVSTWRERTSRPDPERLA 74 (525)
T ss_pred EEEEe-cCCcEEEEEE-------EE-EeCCcceEEEEeCCCCccCcCcEEEEecCCceEEEEEEEEeecCCCcCCcHHHH
Confidence 45566 6666554321 11 22448888888776543 223333321100 0000 00111223344556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 139 VMELELKKLYDTVSSIHQEMFYLRERR 165 (173)
Q Consensus 139 ~l~~~l~~l~~~l~~I~~~q~y~r~re 165 (173)
.++.+|+++++.+..+..+..-+..+.
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655554444433
No 46
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=49.39 E-value=70 Score=30.48 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=35.2
Q ss_pred CceEEEEEeCCCCCeE---EeeeccccceEEEEeeccCceeEEEEecCCC
Q 030705 62 SHKLTVRVTSAYGNSY---HYADRVDSGQFAFTAAEAGDYMACFWAVDHS 108 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l---~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~~ 108 (173)
.+++.+.+.||+|... ...-+.-.-+..|+.++.|.|.+|+.+....
T Consensus 882 ~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~~ 931 (1113)
T KOG0518|consen 882 SQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQH 931 (1113)
T ss_pred ccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCcc
Confidence 6789999999998743 2222223357889999999999999998654
No 47
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.23 E-value=47 Score=19.91 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=18.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 136 SVDVMELELKKLYDTVSSIHQEMFYLR 162 (173)
Q Consensus 136 ~l~~l~~~l~~l~~~l~~I~~~q~y~r 162 (173)
+++.|...+..|..+++.+..+..-+|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777666665
No 48
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=47.30 E-value=97 Score=21.69 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=21.9
Q ss_pred cccceEEEEeeccCceeEEEEecCC
Q 030705 83 VDSGQFAFTAAEAGDYMACFWAVDH 107 (173)
Q Consensus 83 ~~~g~f~f~~~~~G~y~iCf~n~~~ 107 (173)
..+|++.+.+...|.|.+-|.|...
T Consensus 85 D~~Gki~Wk~~~kG~Y~v~l~n~e~ 109 (131)
T PF10794_consen 85 DEEGKIIWKNGRKGKYIVFLPNGET 109 (131)
T ss_pred CCCCcEEEecCCcceEEEEEcCCCc
Confidence 4589999999999999999998864
No 49
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=45.88 E-value=73 Score=19.88 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=17.2
Q ss_pred eccCceeEEEEecCCCCCceEEEEEEEeecccccCccchhccCCc
Q 030705 93 AEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSV 137 (173)
Q Consensus 93 ~~~G~y~iCf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~l 137 (173)
...+.-+|.|.+-... ...+.++|.+.++. ..|.-+...-.+
T Consensus 4 ~~~d~lkf~F~~id~~-d~~re~s~~l~i~~--~~Y~v~~~~P~l 45 (74)
T PF08234_consen 4 IGGDQLKFVFTNIDPN-DPDREFSFTLDISS--DKYEVISCDPPL 45 (74)
T ss_dssp -STT-EEEEE-S-BTT-BSSS-EEEEEE-SS--S-EE--------
T ss_pred cCCceEEEEEeEcCCC-CCCceEEEEEEECC--CeEEEEEecCCc
Confidence 3445578888887654 33456777777665 346543333333
No 50
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=45.63 E-value=75 Score=19.94 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=31.1
Q ss_pred eEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecCCCCCceEEEEEEE
Q 030705 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDW 119 (173)
Q Consensus 64 ~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~~~~~~~~V~f~~ 119 (173)
.+.+.+.+.. ........|.|++. -..|.|.+-|+.... ....+.++.
T Consensus 17 ~a~V~~~~~~----~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy---~~~~~~i~~ 64 (88)
T PF13715_consen 17 GATVYLKNTK----KGTVTDENGRFSIK-LPEGDYTLKISYIGY---ETKTITISV 64 (88)
T ss_pred CeEEEEeCCc----ceEEECCCeEEEEE-EcCCCeEEEEEEeCE---EEEEEEEEe
Confidence 5666666554 11223468999999 457999999987753 445555544
No 51
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=40.27 E-value=2.2e+02 Score=23.75 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=32.7
Q ss_pred CCCceEEEEEeCCCCC---eEEeeeccc---cceEEEEeeccCceeEEEEecCCC
Q 030705 60 PESHKLTVRVTSAYGN---SYHYADRVD---SGQFAFTAAEAGDYMACFWAVDHS 108 (173)
Q Consensus 60 ~~~~~v~v~I~dp~g~---~l~~~~~~~---~g~f~f~~~~~G~y~iCf~n~~~~ 108 (173)
|++..+.+.-..|+=+ +++.+++.- .--|+..-+.++.+.+||+|++..
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce
Confidence 4567777777777654 345443321 234667778899999999998764
No 52
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=39.73 E-value=82 Score=20.63 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhc
Q 030705 137 VDVMELELKKLYDTVSSIHQEMFYLR---ERRNAGA 169 (173)
Q Consensus 137 l~~l~~~l~~l~~~l~~I~~~q~y~r---~re~~~r 169 (173)
+..++.++.+....++.+.+.+.++. .+++.||
T Consensus 10 ~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHR 45 (86)
T PF12958_consen 10 IEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHR 45 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777775 4444444
No 53
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=39.37 E-value=28 Score=21.00 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=18.2
Q ss_pred chhccCCcchHHHHHHHHHHHHH
Q 030705 130 NVAKKGSVDVMELELKKLYDTVS 152 (173)
Q Consensus 130 ~~a~~~~l~~l~~~l~~l~~~l~ 152 (173)
+.+++.+.++++.+++++.+.++
T Consensus 34 s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 34 SNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred ccccccchhHHHHHHHHHHHHHc
Confidence 34688888899999998887754
No 54
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=38.58 E-value=1.2e+02 Score=28.92 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=30.0
Q ss_pred CceEEEEEeCCCCCeEE--eeeccc--cceEEEEeeccCceeEEEEec
Q 030705 62 SHKLTVRVTSAYGNSYH--YADRVD--SGQFAFTAAEAGDYMACFWAV 105 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l~--~~~~~~--~g~f~f~~~~~G~y~iCf~n~ 105 (173)
+..+.+.|.||+|+..- -.+... ...++|.+...|.|.+=+.-.
T Consensus 389 eg~levqV~gp~Gk~~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~~~ 436 (1113)
T KOG0518|consen 389 EGLLEVQVVGPEGKEKEVVVRDNGRGGIHIVTYVPDCPGRYLIVVFYG 436 (1113)
T ss_pred cceEEEEEECCCCCceeeEEEecCCCceEEEEEcCCCCCceEEEEEEC
Confidence 33599999999998531 111111 457888889999998866544
No 55
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=37.90 E-value=80 Score=18.02 Aligned_cols=32 Identities=6% Similarity=0.020 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 030705 140 MELELKKLYDTVSSIHQEMFYLRERRNAGAEP 171 (173)
Q Consensus 140 l~~~l~~l~~~l~~I~~~q~y~r~re~~~r~~ 171 (173)
+-..+..+...+.+++...+-++.--.-+|+|
T Consensus 6 l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRnt 37 (45)
T PF11598_consen 6 LIKQLSELNQMLQELKELLRQQIKETRFLRNT 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666665554445543
No 56
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=37.78 E-value=77 Score=21.84 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=30.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 030705 136 SVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAEPC 172 (173)
Q Consensus 136 ~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~~r~~~ 172 (173)
.++=+..+|.++++++.++..+..-+|+.-..+..+|
T Consensus 77 RlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 77 RLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677899999999999999999888888777766554
No 57
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=37.36 E-value=61 Score=22.20 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=24.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 135 GSVDVMELELKKLYDTVSSIHQEMFYLRERRN 166 (173)
Q Consensus 135 ~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~ 166 (173)
+.++.++..|..+..++..|+++..++.+--.
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~ 39 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENT 39 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45777888888888888888888777765443
No 58
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.10 E-value=29 Score=30.19 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=21.9
Q ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 132 AKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164 (173)
Q Consensus 132 a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~r 164 (173)
+..++++.++ +|++|..+|++++++|..+..|
T Consensus 22 a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 22 AMADDIDLLQ-KIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHhhcccccc
Confidence 3345555555 7888888888888887766654
No 59
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=35.83 E-value=2.7e+02 Score=23.50 Aligned_cols=67 Identities=10% Similarity=0.279 Sum_probs=33.1
Q ss_pred eEEEEEeCCccceeeee--ccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec-cc--cceEEEEeecc
Q 030705 21 SLRFEIQSAHTKCIAED--IKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR-VD--SGQFAFTAAEA 95 (173)
Q Consensus 21 al~f~l~~~~~~Cf~e~--~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~-~~--~g~f~f~~~~~ 95 (173)
.+.+++..+ .|--.. ++.|. ..|.|.+.+ .....+.+.+. +.++-..+. .+ ++.+.++. ..
T Consensus 31 ~v~Vti~d~--~c~p~~~tVpAG~---~~f~V~N~~-------~~~~Efe~~~~-~~vv~e~EnIaPG~s~~l~~~L-~p 96 (375)
T PRK10378 31 QVKVTVNDK--QCEPMTLTVNAGK---TQFIIQNHS-------QKALEWEILKG-VMVVEERENIAPGFSQKMTANL-QP 96 (375)
T ss_pred ceEEEEECC--ccccCceeeCCCC---EEEEEEeCC-------CCcceEEeecc-ccccccccccCCCCceEEEEec-CC
Confidence 455666654 566554 45564 345565443 23455555531 112222222 22 23454443 68
Q ss_pred CceeE-E
Q 030705 96 GDYMA-C 101 (173)
Q Consensus 96 G~y~i-C 101 (173)
|.|.+ |
T Consensus 97 GtY~~~C 103 (375)
T PRK10378 97 GEYDMTC 103 (375)
T ss_pred ceEEeec
Confidence 99988 9
No 60
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=35.81 E-value=1.3e+02 Score=19.70 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=39.8
Q ss_pred eccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecCC
Q 030705 37 DIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDH 107 (173)
Q Consensus 37 ~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~ 107 (173)
++.+.+.|+|. |...+ .+. ..--|.+.|+.|+---.-...++|.|.|-+. +|...+=...+..
T Consensus 3 d~~ke~VItG~--V~~~G--~Pv---~gAyVRLLD~sgEFtaEvvts~~G~FRFfaa-pG~WtvRal~~~g 65 (85)
T PF07210_consen 3 DVEKETVITGR--VTRDG--EPV---GGAYVRLLDSSGEFTAEVVTSATGDFRFFAA-PGSWTVRALSRGG 65 (85)
T ss_pred CccceEEEEEE--EecCC--cCC---CCeEEEEEcCCCCeEEEEEecCCccEEEEeC-CCceEEEEEccCC
Confidence 34556777777 44221 111 2456778899998655445567899999884 4777775555443
No 61
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=35.18 E-value=35 Score=22.98 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=27.5
Q ss_pred EEEEEeecccccCccchhccCCcchHHHHHHHHHHHHHHHHHH
Q 030705 115 IDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQE 157 (173)
Q Consensus 115 V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~~I~~~ 157 (173)
+-.|-++|..+.-..+ .---+++|+++++++|+..++++.+.
T Consensus 12 lvmd~~Tgvvae~~ed-vi~ldv~pi~Eqi~kLe~~vddl~~s 53 (108)
T COG4062 12 LVMDPETGVVAEGFED-VIFLDVDPIEEQIKKLETLVDDLENS 53 (108)
T ss_pred eeEccchhhHhhccCc-eEEEeccHHHHHHHHHHHHHHHHHhc
Confidence 3345556665432111 12357899999999999999887654
No 62
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.97 E-value=69 Score=21.81 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=12.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 137 VDVMELELKKLYDTVSSIHQEMFYLR 162 (173)
Q Consensus 137 l~~l~~~l~~l~~~l~~I~~~q~y~r 162 (173)
++.++..|..+...+..++.....+-
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~ 35 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELL 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444433
No 63
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.65 E-value=3e+02 Score=23.35 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=26.9
Q ss_pred CceEEEEEeCCCCCeEEeeeccccceEEEEee----ccCceeEEEEe
Q 030705 62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAA----EAGDYMACFWA 104 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~----~~G~y~iCf~n 104 (173)
...+.|+|++|++-.+.+..... |...+. ..|.|+.=+.-
T Consensus 69 ~etV~Vtl~G~ns~~~~~~~~~d---FkV~ADLt~a~~Gt~evkl~v 112 (403)
T COG4856 69 PETVTVTLKGPNSIVLKSEKPED---FKVVADLTHAGVGTHEVKLQV 112 (403)
T ss_pred ceEEEEEEeCCcceeeeeecCcC---eEEEEEhhhcCCCceEeeeEe
Confidence 56999999999999888654333 555553 34777664443
No 64
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=33.34 E-value=47 Score=22.26 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=27.8
Q ss_pred EEEEEeecccccCccchhccCCcchHHHHHHHHHHHHHHHHHH
Q 030705 115 IDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQE 157 (173)
Q Consensus 115 V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~~I~~~ 157 (173)
+-+|..+|.-+..-.. .-.-.++|+.+++++|+.-.+++.+.
T Consensus 12 Lv~D~~tG~va~~~~d-vi~~s~~pi~E~i~kLe~~addL~ns 53 (96)
T PRK00965 12 LVMDPDTGLIAEMRED-IIVVDMDPIEEEINKLEALADDLENS 53 (96)
T ss_pred eeeccccceeeeccCC-eEEEechHHHHHHHHHHHHHHHHHhc
Confidence 4455666655432111 11347999999999999999988654
No 65
>PRK15396 murein lipoprotein; Provisional
Probab=32.95 E-value=94 Score=19.95 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=24.8
Q ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 132 AKKGSVDVMELELKKLYDTVSSIHQEMFYLRE 163 (173)
Q Consensus 132 a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~ 163 (173)
+...+++.|..+++.|..+++.+..+..-+|.
T Consensus 22 As~~kvd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 22 SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557888888888888888888888777763
No 66
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=32.11 E-value=1.1e+02 Score=24.22 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=28.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030705 135 GSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGA 169 (173)
Q Consensus 135 ~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~~r 169 (173)
-+.++|+++.+.++.+++.+.++..-..+|+.+-.
T Consensus 204 V~td~L~keAe~i~~~lekl~eq~~~~~~~~~~~~ 238 (244)
T COG1938 204 VDTDKLEKEAEEIEEQLEKLAEQLEKEEERVEREE 238 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 46788999999999999999888888877655433
No 67
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=31.96 E-value=46 Score=16.49 Aligned_cols=15 Identities=20% Similarity=0.292 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHh
Q 030705 2 IRLTLTLVLVIGILS 16 (173)
Q Consensus 2 ~~~~~~~~~~l~ll~ 16 (173)
.+.+++.++.++.|+
T Consensus 7 mKkil~~l~a~~~La 21 (25)
T PF08139_consen 7 MKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455555555555443
No 68
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=31.95 E-value=1.9e+02 Score=20.57 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=36.6
Q ss_pred EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCC---CeEEeeeccccceEEEE----eeccCceeEEEEecCCC
Q 030705 43 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYG---NSYHYADRVDSGQFAFT----AAEAGDYMACFWAVDHS 108 (173)
Q Consensus 43 ~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g---~~l~~~~~~~~g~f~f~----~~~~G~y~iCf~n~~~~ 108 (173)
.++++ |.+...|.+ ..+|.|+++...+ ..+.+......|++.+. ....|.|++=|......
T Consensus 28 ~Is~H--VLDt~~G~P---A~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf 95 (137)
T PRK15036 28 ILSVH--ILNQQTGKP---AADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYF 95 (137)
T ss_pred CeEEE--EEeCCCCcC---CCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhh
Confidence 35554 766554433 3356666665433 24555555668888762 23469999999876653
No 69
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=31.06 E-value=83 Score=25.04 Aligned_cols=31 Identities=10% Similarity=-0.095 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030705 139 VMELELKKLYDTVSSIHQEMFYLRERRNAGA 169 (173)
Q Consensus 139 ~l~~~l~~l~~~l~~I~~~q~y~r~re~~~r 169 (173)
.+..-+..|+..+....+++++-+++|++-|
T Consensus 180 ~~~sa~~rlE~~l~~~l~~~d~~WA~eA~~R 210 (260)
T PF11079_consen 180 KPKSALKRLEQYLEQYLSQEDHDWAEEARER 210 (260)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 3678899999999999999999999988755
No 70
>PRK14745 RepA leader peptide Tap; Provisional
Probab=30.84 E-value=72 Score=15.62 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=9.7
Q ss_pred ChhhHHHHHHHHHHHh
Q 030705 1 MIRLTLTLVLVIGILS 16 (173)
Q Consensus 1 ~~~~~~~~~~~l~ll~ 16 (173)
|+|.+--+++..++|+
T Consensus 1 mlrk~qylfl~hlllp 16 (26)
T PRK14745 1 MLRKFQYLFLWHLLLP 16 (26)
T ss_pred ChHHHHHHHHHHHHhh
Confidence 6777666655555544
No 71
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.74 E-value=91 Score=21.39 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=14.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 136 SVDVMELELKKLYDTVSSIHQEMFYLRE 163 (173)
Q Consensus 136 ~l~~l~~~l~~l~~~l~~I~~~q~y~r~ 163 (173)
.+..++..+..+...+..++.....+.+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~E 36 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLE 36 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444443
No 72
>PF01606 Arteri_env: Arterivirus envelope protein; InterPro: IPR002556 This family consists of viral envelope proteins from the Arteriviridae; this includes Porcine reproductive and respiratory syndrome virus (PRRSV) envelope protein GP3 and Lactate dehydrogenase-elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=30.53 E-value=2.3e+02 Score=21.20 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=32.8
Q ss_pred ChhhHHHHHHHHHHHhhcceeEEEEEeCCccceeeeeccCC-c--EEEEEEEEEc
Q 030705 1 MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSN-S--MTVGKYNVVN 52 (173)
Q Consensus 1 ~~~~~~~~~~~l~ll~~~~~al~f~l~~~~~~Cf~e~~~~~-~--~v~~~y~v~~ 52 (173)
|.++-..+-.+|..++..+-+-.+.-.++.+-||+--+..| + .+.++|.|-.
T Consensus 1 ma~~ca~~~~~~C~f~~~~~c~~v~~~~nat~CfWFPl~~Gn~sfEL~vNyTvC~ 55 (214)
T PF01606_consen 1 MANSCAFFHIFLCSFICYSFCCAVAANSNATYCFWFPLVRGNFSFELTVNYTVCP 55 (214)
T ss_pred CcchhhhHHHHHHHHHhhheeeeEEeCCCceEEEEEEeccCCceEEEEEeeEecC
Confidence 33444444333333334556666777888899999998775 3 4577888854
No 73
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=30.33 E-value=2e+02 Score=20.42 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=29.0
Q ss_pred CceEEEEEeCCCCCeEEeeeccc---------cceEEEEeeccCceeEEEEecC
Q 030705 62 SHKLTVRVTSAYGNSYHYADRVD---------SGQFAFTAAEAGDYMACFWAVD 106 (173)
Q Consensus 62 ~~~v~v~I~dp~g~~l~~~~~~~---------~g~f~f~~~~~G~y~iCf~n~~ 106 (173)
+.-+.+.++|++|++++.+.... ...|.-. -..|.|.++.--..
T Consensus 46 sfl~~i~l~d~~g~vv~~~~~~~L~~lP~~~i~N~Yv~~-~~~g~~gl~vpLGa 98 (133)
T PF07680_consen 46 SFLIGIQLKDSTGHVVLNWDQEKLSSLPKSNIKNDYVAK-VKPGKHGLVVPLGA 98 (133)
T ss_pred ceeeEEEEECCCCCEEEEeCHHHhhhCChhHcCccEEcc-ccCCceeEEEEcCC
Confidence 66899999999999998764422 2344322 23577777776543
No 74
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=29.97 E-value=1.3e+02 Score=18.16 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=28.0
Q ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 132 AKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164 (173)
Q Consensus 132 a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~r 164 (173)
|-.+.++-+..+|..|..+...+..|-.++|..
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556889999999999999999999988888753
No 75
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.96 E-value=61 Score=25.42 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 137 VDVMELELKKLYDTVSSIHQEMFYLRERR 165 (173)
Q Consensus 137 l~~l~~~l~~l~~~l~~I~~~q~y~r~re 165 (173)
+-.++.+|.+++..++.+..++.|+..|-
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33677777778888888888887777663
No 76
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=29.91 E-value=1.4e+02 Score=18.49 Aligned_cols=41 Identities=15% Similarity=0.034 Sum_probs=28.6
Q ss_pred eEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecC
Q 030705 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD 106 (173)
Q Consensus 64 ~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~ 106 (173)
.+=+.|+|.+|+.+++..-.+...+.| .....+.+=+.|..
T Consensus 8 ~sWv~V~d~dG~~~~~~~l~~G~~~~~--~~~~~~~i~iGna~ 48 (77)
T PF13464_consen 8 DSWVEVTDADGKVLFSGTLKAGETKTF--EGKEPFRIRIGNAG 48 (77)
T ss_pred CeEEEEEeCCCcEeeeeeeCCCcEEEE--eCCCCEEEEEeCCC
Confidence 577889999999999765555556666 34456666666654
No 77
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=29.55 E-value=1.9e+02 Score=19.81 Aligned_cols=32 Identities=19% Similarity=0.016 Sum_probs=18.8
Q ss_pred EEeeeccccceEEE-----EeeccCceeEEEEecCCC
Q 030705 77 YHYADRVDSGQFAF-----TAAEAGDYMACFWAVDHS 108 (173)
Q Consensus 77 l~~~~~~~~g~f~f-----~~~~~G~y~iCf~n~~~~ 108 (173)
+.+......|+..- ..-..|.|++.|......
T Consensus 34 i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf 70 (112)
T TIGR02962 34 LAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYF 70 (112)
T ss_pred EEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhh
Confidence 44333344566541 122469999999887653
No 78
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=28.96 E-value=33 Score=23.92 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=11.0
Q ss_pred ccCceeEEEEecCC
Q 030705 94 EAGDYMACFWAVDH 107 (173)
Q Consensus 94 ~~G~y~iCf~n~~~ 107 (173)
..|.|++||.-...
T Consensus 115 P~GsYRiCFrL~~~ 128 (145)
T TIGR02542 115 PEGSYRICFRLFNA 128 (145)
T ss_pred CCCceEEEEEEecc
Confidence 36999999987654
No 79
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=27.94 E-value=75 Score=19.30 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhccee
Q 030705 5 TLTLVLVIGILSSTSQS 21 (173)
Q Consensus 5 ~~~~~~~l~ll~~~~~a 21 (173)
++.+++++++++.++.|
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 4 LATLLALFVLTSLPAWA 20 (92)
T ss_pred HHHHHHHHHHhcchhhh
Confidence 45555555554444444
No 80
>smart00338 BRLZ basic region leucin zipper.
Probab=27.75 E-value=94 Score=18.64 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=25.4
Q ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030705 132 AKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGA 169 (173)
Q Consensus 132 a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~~r 169 (173)
.++.++..++.++..|...-..+......++..-..++
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888777777777776666665444433
No 81
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=27.55 E-value=87 Score=21.39 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=23.4
Q ss_pred hhccCCcchHHHHHHHHHHHHHHHHHHH
Q 030705 131 VAKKGSVDVMELELKKLYDTVSSIHQEM 158 (173)
Q Consensus 131 ~a~~~~l~~l~~~l~~l~~~l~~I~~~q 158 (173)
++....++.+..+|..|+.++..+.+++
T Consensus 79 ~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 79 VARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777788889999999999999887764
No 82
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=27.43 E-value=57 Score=21.87 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHH
Q 030705 135 GSVDVMELELKKLYDTVSSIHQE 157 (173)
Q Consensus 135 ~~l~~l~~~l~~l~~~l~~I~~~ 157 (173)
-.++|+.+++.+|+.-.+++.+.
T Consensus 30 ~s~~pi~eqi~kLe~~addl~ns 52 (97)
T PF05440_consen 30 VSMDPINEQIDKLEKAADDLVNS 52 (97)
T ss_pred EechHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999988654
No 83
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.12 E-value=87 Score=15.17 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=9.8
Q ss_pred cchHHHHHHHHHHHHHH
Q 030705 137 VDVMELELKKLYDTVSS 153 (173)
Q Consensus 137 l~~l~~~l~~l~~~l~~ 153 (173)
|+.+...|..|+.+|..
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555666666666554
No 84
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=27.05 E-value=67 Score=20.96 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHhhcceeEEEEEeCCcc
Q 030705 2 IRLTLTLVLVIGILSSTSQSLRFEIQSAHT 31 (173)
Q Consensus 2 ~~~~~~~~~~l~ll~~~~~al~f~l~~~~~ 31 (173)
+|.++..+.++.+. +...++..-+.||++
T Consensus 4 ~r~~~~~~~llG~G-GvG~~L~~LvtPgee 32 (84)
T PF15141_consen 4 LRKALSVVALLGFG-GVGYALFVLVTPGEE 32 (84)
T ss_pred HHHHHHHHHHHHcc-chhheeeeEeCCcHH
Confidence 46777777777776 889999999999976
No 85
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=27.05 E-value=23 Score=14.31 Aligned_cols=8 Identities=13% Similarity=0.580 Sum_probs=5.2
Q ss_pred Cccceeee
Q 030705 29 AHTKCIAE 36 (173)
Q Consensus 29 ~~~~Cf~e 36 (173)
+..+||+.
T Consensus 2 ~~~~CFWK 9 (12)
T PF02083_consen 2 GKSECFWK 9 (12)
T ss_pred Cccchhhh
Confidence 45678874
No 86
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=26.74 E-value=2.8e+02 Score=20.79 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=35.4
Q ss_pred cceeeeeccC--CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecCCC
Q 030705 31 TKCIAEDIKS--NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS 108 (173)
Q Consensus 31 ~~Cf~e~~~~--~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~~ 108 (173)
+-|++-.... +....++|.+... +..+.+...++.+-.++-. .....+.........|.+|++.....
T Consensus 28 TvC~w~k~~~~~~~~tifSYat~~~--------~nell~~~~~~~~~~l~i~--~~~~~~~~~~~~~~Whh~C~tW~s~~ 97 (195)
T PF00354_consen 28 TVCFWVKTDDSSNDGTIFSYATSSQ--------DNELLLFGSSSGSLRLYIN--GSSVSFSGPIRDGQWHHICVTWDSST 97 (195)
T ss_dssp EEEEEEEESGSGS-EEEEEEEETTE--------EEEEEEEEETTTEEEEEET--TEEEEEEECS-TSS-EEEEEEEETTT
T ss_pred EEEEEEEeccCCCceEEEEEccCCC--------CccEEEEEeCCceEEEEEC--CeEeEeccccCCCCcEEEEEEEecCC
Confidence 5688887754 4566778877532 2344443333332223211 11233444445568899999987754
No 87
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=26.62 E-value=1.1e+02 Score=20.57 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=17.8
Q ss_pred eccCceeEEEEecCCCCCceEEEEEEEee
Q 030705 93 AEAGDYMACFWAVDHSPQTTVTIDFDWRT 121 (173)
Q Consensus 93 ~~~G~y~iCf~n~~~~~~~~~~V~f~~~~ 121 (173)
.+.|.|.+=..|... ...+.|++.+
T Consensus 75 ~E~G~YTf~a~N~~~----~~s~tF~l~v 99 (101)
T cd05860 75 TEGGTYTFLVSNSDA----SASVTFNVYV 99 (101)
T ss_pred hhCcEEEEEEECCCC----eEEEEEEEEE
Confidence 567999988888864 3666666653
No 88
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=26.56 E-value=1.9e+02 Score=18.83 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=21.6
Q ss_pred EEEeeccCce--eEEEEecCCC--------CCceEEEEEEEe
Q 030705 89 AFTAAEAGDY--MACFWAVDHS--------PQTTVTIDFDWR 120 (173)
Q Consensus 89 ~f~~~~~G~y--~iCf~n~~~~--------~~~~~~V~f~~~ 120 (173)
.|.....+.| .+||.-.... .+...+|+||++
T Consensus 25 e~Vlet~~qYP~~i~f~~~~dk~~~l~~~~~Gd~V~Vsf~i~ 66 (84)
T PF11325_consen 25 EFVLETEEQYPQKICFEFWGDKIDLLDNFQVGDEVKVSFNIE 66 (84)
T ss_pred EEEEeCCCcCCceEEEEEEcchhhhhccCCCCCEEEEEEEee
Confidence 4555566777 7888765432 256788999886
No 89
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.55 E-value=42 Score=22.35 Aligned_cols=8 Identities=38% Similarity=0.243 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 030705 4 LTLTLVLV 11 (173)
Q Consensus 4 ~~~~~~~~ 11 (173)
++|.|.|+
T Consensus 5 ~~llL~l~ 12 (95)
T PF07172_consen 5 AFLLLGLL 12 (95)
T ss_pred HHHHHHHH
Confidence 34444333
No 90
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=26.10 E-value=1.7e+02 Score=18.09 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 138 DVMELELKKLYDTVSSIHQEMFYLRE 163 (173)
Q Consensus 138 ~~l~~~l~~l~~~l~~I~~~q~y~r~ 163 (173)
...+..+..+..+++.|..++.++..
T Consensus 30 ~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 30 AANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888887753
No 91
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=26.05 E-value=2.2e+02 Score=19.39 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=30.5
Q ss_pred ccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee
Q 030705 30 HTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA 80 (173)
Q Consensus 30 ~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~ 80 (173)
+-+=..-++..++.+.++|+|..+.. ..--+.|...|.++.++-..
T Consensus 35 ~~~~~gf~vv~d~~v~v~f~Vtr~~~-----~~a~C~VrA~~~d~aeVGrr 80 (112)
T PF14155_consen 35 SAEVIGFEVVDDSTVEVTFDVTRDPG-----RPAVCIVRALDYDGAEVGRR 80 (112)
T ss_pred eEEEEEEEECCCCEEEEEEEEEECCC-----CCEEEEEEEEeCCCCEEEEE
Confidence 34556666777788888888874321 13467777778888777654
No 92
>PRK10351 holo-(acyl carrier protein) synthase 2; Provisional
Probab=25.95 E-value=1.7e+02 Score=22.04 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=34.2
Q ss_pred eCCCCCeEEeeeccccceEEEEeeccCceeEEEEecCCCCCceEEEEEEEeecccccCccchhc
Q 030705 70 TSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAK 133 (173)
Q Consensus 70 ~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~ 133 (173)
++++|++... ......|....+|.|-.|.-... ..|.+|++.-....+|..+++
T Consensus 45 ~~~~GKP~l~----~~~~~~fSISHSg~~va~a~s~~------~~VGIDIE~i~~~~~~~~la~ 98 (187)
T PRK10351 45 YGEQGKPAFA----PETPLWFNLSHSGDDIALLLSDE------GEVGCDIEVIRPRANWRSLAN 98 (187)
T ss_pred cCcCCCcccc----CCCCCeEEEecccCcEEEEEEcC------CCeEEEEEEecCccCHHHHHH
Confidence 5678887763 12346788889999999876543 236667765433335555553
No 93
>PLN00115 pollen allergen group 3; Provisional
Probab=25.95 E-value=1.1e+02 Score=21.21 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=16.7
Q ss_pred hhHHHHHHHHH-HHhhc--ceeEEEEEeCCc
Q 030705 3 RLTLTLVLVIG-ILSST--SQSLRFEIQSAH 30 (173)
Q Consensus 3 ~~~~~~~~~l~-ll~~~--~~al~f~l~~~~ 30 (173)
|+.|...+.|+ |++.. ...++|+|..++
T Consensus 4 ~~~~~~~~~~a~l~~~~~~g~~v~F~V~~gS 34 (118)
T PLN00115 4 LSFLLLAVALAALFAVGSCATEVTFKVGKGS 34 (118)
T ss_pred hHHHHHHHHHHHHhhhhhcCCceEEEECCCC
Confidence 44444444444 44433 457899999887
No 94
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=25.13 E-value=1.1e+02 Score=23.51 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCCeEEeeecc---cc-ceEEE--EeeccCceeEEEEec
Q 030705 63 HKLTVRVTSAYGNSYHYADRV---DS-GQFAF--TAAEAGDYMACFWAV 105 (173)
Q Consensus 63 ~~v~v~I~dp~g~~l~~~~~~---~~-g~f~f--~~~~~G~y~iCf~n~ 105 (173)
..+.+.|+|.+|+.+...... .. +.+.. ..-..|.|+++....
T Consensus 29 ~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n 77 (283)
T PF08842_consen 29 KRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGN 77 (283)
T ss_dssp -EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES
T ss_pred eEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEEC
Confidence 489999999999955433221 12 45554 234469999966554
No 95
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.78 E-value=1.1e+02 Score=24.14 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=25.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030705 135 GSVDVMELELKKLYDTVSSIHQEMFYLRERRNAG 168 (173)
Q Consensus 135 ~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~~ 168 (173)
.+++.++.+|.+|..+++....+.+-+.+|++.+
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4677777778888887777777777777776654
No 96
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.44 E-value=3e+02 Score=20.42 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=9.7
Q ss_pred cCceeEEEEecCC
Q 030705 95 AGDYMACFWAVDH 107 (173)
Q Consensus 95 ~G~y~iCf~n~~~ 107 (173)
+|.|.+.|....+
T Consensus 93 sG~y~V~~fDEeg 105 (167)
T PF05404_consen 93 SGTYEVKFFDEEG 105 (167)
T ss_pred CCceEEEEeChHH
Confidence 5888888887644
No 97
>PRK03757 hypothetical protein; Provisional
Probab=24.41 E-value=3e+02 Score=20.47 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=25.1
Q ss_pred ChhhHHHHHHHHHHH-hhcceeEEEEEeCC---ccceeeeeccCCcEEEEEEEEEc
Q 030705 1 MIRLTLTLVLVIGIL-SSTSQSLRFEIQSA---HTKCIAEDIKSNSMTVGKYNVVN 52 (173)
Q Consensus 1 ~~~~~~~~~~~l~ll-~~~~~al~f~l~~~---~~~Cf~e~~~~~~~v~~~y~v~~ 52 (173)
|-+.++.+++++++. +..+.+-.+.|+|. ..-=|.-.-.....+.|.|.-.+
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~a~~y~iD~~~~hS~v~F~v~h~g~s~v~G~F~~~~ 56 (191)
T PRK03757 1 MKKTLLGLALGSLLFSAGSAVAADYKIDTEGQHAFINFKISHLGYSWLYGRFNDFD 56 (191)
T ss_pred CchHHHHHHHHHHHhccccccCcceEECCCCCceEEEEEEEeeeeeeEEEEEeeeE
Confidence 445455544433332 34455667788883 33333322111245666665443
No 98
>PRK10260 L,D-transpeptidase; Provisional
Probab=24.04 E-value=83 Score=25.69 Aligned_cols=34 Identities=6% Similarity=0.245 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHhhcceeEEEEEeCCccceeee
Q 030705 3 RLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAE 36 (173)
Q Consensus 3 ~~~~~~~~~l~ll~~~~~al~f~l~~~~~~Cf~e 36 (173)
+.++.+++.++++...+.|..+.+++...+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~A~~y~lp~~~~~lvG~ 39 (306)
T PRK10260 6 KTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQ 39 (306)
T ss_pred hHHHHHHHHHHHhccchhheeecCCCCCCceEcc
Confidence 4455555555555577889999999888777655
No 99
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.88 E-value=77 Score=22.12 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=28.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 030705 133 KKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAEP 171 (173)
Q Consensus 133 ~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~~r~~ 171 (173)
+.+-++.++.++..|+-+++.+.+.+.-+++|-.+++..
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888777766543
No 100
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=23.88 E-value=2e+02 Score=19.39 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=28.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030705 134 KGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAE 170 (173)
Q Consensus 134 ~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~~r~ 170 (173)
.-.++.++.+|..++.++....++=..+..|-..+.+
T Consensus 51 sitle~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvk 87 (99)
T PF11083_consen 51 SITLEQVEKEIRELQNQLGLYLDEYEKLVRRLEKFVK 87 (99)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999888888888877777666543
No 101
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=23.86 E-value=2.2e+02 Score=18.70 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=30.1
Q ss_pred ceEEEEEeC-CCCCeEEeeeccccceEEEEeeccCceeEEE
Q 030705 63 HKLTVRVTS-AYGNSYHYADRVDSGQFAFTAAEAGDYMACF 102 (173)
Q Consensus 63 ~~v~v~I~d-p~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf 102 (173)
.++.|.+++ .+|+++.+-.....|...|.....+.+-+.=
T Consensus 29 ~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~~~~~~viA~ 69 (97)
T PF11974_consen 29 AGAEVELYDSRNGQVLASGKTDADGFASFDSTKKPFLVIAR 69 (97)
T ss_pred CCCEEEEEECCCCcEeeeeeeCCCceEEecCCCCCEEEEEE
Confidence 378888999 8999998877777898888887444444443
No 102
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=22.95 E-value=51 Score=14.98 Aligned_cols=11 Identities=27% Similarity=0.763 Sum_probs=4.4
Q ss_pred hhhHHHHHHHH
Q 030705 2 IRLTLTLVLVI 12 (173)
Q Consensus 2 ~~~~~~~~~~l 12 (173)
.|..+-++++|
T Consensus 2 Mk~vIIlvvLL 12 (19)
T PF13956_consen 2 MKLVIILVVLL 12 (19)
T ss_pred ceehHHHHHHH
Confidence 34444433333
No 103
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=22.92 E-value=52 Score=22.74 Aligned_cols=25 Identities=8% Similarity=0.349 Sum_probs=18.7
Q ss_pred hhccCCcchHHHHHHHHHHHHHHHH
Q 030705 131 VAKKGSVDVMELELKKLYDTVSSIH 155 (173)
Q Consensus 131 ~a~~~~l~~l~~~l~~l~~~l~~I~ 155 (173)
++++++++.|+.+|.+|..++..+.
T Consensus 92 ~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 92 IPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666778888888888888777654
No 104
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.66 E-value=76 Score=20.94 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=11.6
Q ss_pred EEEEEeCCCCCeEE
Q 030705 65 LTVRVTSAYGNSYH 78 (173)
Q Consensus 65 v~v~I~dp~g~~l~ 78 (173)
-.+.++||+|+.+-
T Consensus 102 r~~~~~DPdGn~ie 115 (120)
T cd09011 102 RVVRFYDPDKHIIE 115 (120)
T ss_pred EEEEEECCCCCEEE
Confidence 57889999999764
No 105
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=22.39 E-value=1.5e+02 Score=17.99 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=17.4
Q ss_pred eccCceeEEEEecCCCCCceEEEEEEE
Q 030705 93 AEAGDYMACFWAVDHSPQTTVTIDFDW 119 (173)
Q Consensus 93 ~~~G~y~iCf~n~~~~~~~~~~V~f~~ 119 (173)
...|.|..+..|.... ......|.+
T Consensus 44 ~D~G~YtC~a~N~~G~--~~~~~t~~l 68 (70)
T cd05864 44 KDAGNYTVVLTNPITK--EEQRHTFQL 68 (70)
T ss_pred HHCEEEEEEEEECCCc--eeeEEEEEE
Confidence 4569999999999753 445555554
No 106
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.34 E-value=1.7e+02 Score=22.27 Aligned_cols=34 Identities=9% Similarity=0.165 Sum_probs=26.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030705 134 KGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAE 170 (173)
Q Consensus 134 ~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~~r~ 170 (173)
...+..+...|+.++++++.+ +.|++.|+..+..
T Consensus 159 ~~~l~~v~~Dl~~ie~QV~~L---e~~L~~k~~eL~~ 192 (195)
T PF12761_consen 159 GKNLKSVREDLDTIEEQVDGL---ESHLSSKKQELQQ 192 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 356777888888888888888 7788888877643
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=22.29 E-value=1.2e+02 Score=16.82 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030705 141 ELELKKLYDTVSSIHQEM 158 (173)
Q Consensus 141 ~~~l~~l~~~l~~I~~~q 158 (173)
...+++|.+.+.+|.++|
T Consensus 26 ~~alkELIeELvNITqnQ 43 (43)
T PF03487_consen 26 STALKELIEELVNITQNQ 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHS-
T ss_pred hHHHHHHHHHHHhhccCC
Confidence 447888888888887765
No 108
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=22.18 E-value=1.7e+02 Score=16.73 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=19.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 134 KGSVDVMELELKKLYDTVSSIHQEMFYLR 162 (173)
Q Consensus 134 ~~~l~~l~~~l~~l~~~l~~I~~~q~y~r 162 (173)
.++-+.++..+..+..++..+..-..-+.
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999888865544443
No 109
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=21.60 E-value=77 Score=18.96 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHhhc
Q 030705 4 LTLTLVLVIGILSST 18 (173)
Q Consensus 4 ~~~~~~~~l~ll~~~ 18 (173)
..+.++++|+.|++.
T Consensus 3 ~~~~s~~ala~l~sL 17 (58)
T COG5567 3 NVFKSLLALATLFSL 17 (58)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344454444444333
No 110
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.60 E-value=78 Score=20.87 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=12.0
Q ss_pred eEEEEEeCCCCCeEE
Q 030705 64 KLTVRVTSAYGNSYH 78 (173)
Q Consensus 64 ~v~v~I~dp~g~~l~ 78 (173)
.-.+.++||+|+.+.
T Consensus 96 ~r~f~~~DPdGn~~~ 110 (113)
T cd08356 96 GREFFLHDPSGVLWH 110 (113)
T ss_pred cEEEEEECCCccEEE
Confidence 367889999999774
No 111
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.44 E-value=2.1e+02 Score=19.16 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=22.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030705 135 GSVDVMELELKKLYDTVSSIHQEMFYLRERRNAG 168 (173)
Q Consensus 135 ~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~~ 168 (173)
+-+..++..+..++..++.+...+.|++.+-.++
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567777777777777777777776554443
No 112
>PF13584 BatD: Oxygen tolerance
Probab=21.32 E-value=3.6e+02 Score=23.05 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=33.0
Q ss_pred eccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCe---EEe--eeccccceEEEEeeccCceeE-EEEe
Q 030705 37 DIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS---YHY--ADRVDSGQFAFTAAEAGDYMA-CFWA 104 (173)
Q Consensus 37 ~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~---l~~--~~~~~~g~f~f~~~~~G~y~i-Cf~n 104 (173)
.+..|..+++.+.+.+.......|+=.++. |.+|.-.. +.. ......-.|.+.+...|.|.| =|.-
T Consensus 23 ~v~~ge~~~l~i~~~~~~~~~~~p~l~~f~--v~~~~~s~~~~~inG~~~~~~~~~~~l~p~~~G~~~IP~~~v 94 (484)
T PF13584_consen 23 EVGLGETFQLTITINGDGDDPDLPELDGFE--VLGPSQSSSTSIINGKVSSSTTYTYTLQPKKTGTFTIPPFTV 94 (484)
T ss_pred EEcCCCEEEEEEEEecCcccCCCCCCCCeE--EcceEEEEEEEEecCceEEEEEEEEEEEecccceEEEceEEE
Confidence 467888888888886532111112112222 23332111 110 011234567777888898887 3443
No 113
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=21.12 E-value=2.3e+02 Score=19.56 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=20.7
Q ss_pred EEEeCCCCCeEEee-----eccccceEEEEeec-cCc--eeEEEEecC
Q 030705 67 VRVTSAYGNSYHYA-----DRVDSGQFAFTAAE-AGD--YMACFWAVD 106 (173)
Q Consensus 67 v~I~dp~g~~l~~~-----~~~~~g~f~f~~~~-~G~--y~iCf~n~~ 106 (173)
+.+....|+++... .+.++..|++...+ +|. +.+||.-..
T Consensus 26 l~~~~~~gkivv~~~~~~~~~~tsn~ysv~vge~~~~~~F~f~~k~eN 73 (112)
T PF09116_consen 26 LCFVNDDGKIVVTDFNKDDKNDTSNSYSVEVGEYDGDNNFCFCFKMEN 73 (112)
T ss_dssp EEEEEETTEEEEEEE-TTSTTS-S-SEEEEEEE--SS--EEEEEEGGG
T ss_pred EEEEecCCEEEEEccccccccCCCCceEEEEeccCCCccEEEEEEece
Confidence 34444556655443 23346677777644 355 777776543
No 114
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=20.64 E-value=1.8e+02 Score=19.68 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=23.4
Q ss_pred ccCceeEEEEecCCCCCceEEEEEEEeeccc
Q 030705 94 EAGDYMACFWAVDHSPQTTVTIDFDWRTGVQ 124 (173)
Q Consensus 94 ~~G~y~iCf~n~~~~~~~~~~V~f~~~~g~~ 124 (173)
....|.+=|.+.-.. ...+.++|++++|..
T Consensus 59 ~g~WY~l~F~C~vd~-d~~~V~sF~~~vG~~ 88 (101)
T PF06059_consen 59 RGKWYDLSFRCEVDP-DATKVTSFSFKVGDP 88 (101)
T ss_pred CCeEEEEEEEEEECC-CceEEEEEeeccCCc
Confidence 347888888887654 567899999999974
No 115
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=20.09 E-value=1.1e+02 Score=16.62 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=14.5
Q ss_pred EEEEeeccCceeEEEEecC
Q 030705 88 FAFTAAEAGDYMACFWAVD 106 (173)
Q Consensus 88 f~f~~~~~G~y~iCf~n~~ 106 (173)
+.|++...+.|.+|-=..+
T Consensus 4 ~~~~~e~~~~~~lC~C~~S 22 (38)
T smart00704 4 DEVEVEKREKYALCRCGRS 22 (38)
T ss_pred EEEEecCCCEEEEeeCCCC
Confidence 5678888889999975544
No 116
>PHA02102 hypothetical protein
Probab=20.06 E-value=86 Score=19.30 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 030705 137 VDVMELELKKLYDTVSSIHQEMFYLR 162 (173)
Q Consensus 137 l~~l~~~l~~l~~~l~~I~~~q~y~r 162 (173)
+..--.+|++|...++++-.+|+|-.
T Consensus 7 LvekA~eLqkLl~eV~dlAse~~yGv 32 (72)
T PHA02102 7 LVEKALELQKLLKEVKDLASEQDYGV 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccce
Confidence 33345567788888888888888743
Done!