STRING 9.05 
  AT5G04900 protein (Arabidopsis thaliana) - STRING network view
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
AT5G04900
short-chain dehydrogenase/reductase (SDR) family protein; short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN- oxidoreductase activity, binding, catalytic activity; INVOLVED IN- metabolic process; LOCATED IN- chloroplast; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- NAD(P)-binding (InterPro-IPR016040), Glucose/ribitol dehydrogenase (InterPro-IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro-IPR002198); BEST Arabidopsis thaliana protein match is- short-chain dehydrogenase/reductase (SDR) family protein [...] (348 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
ATCLH1
ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1); chlorophyllase; Chlorophyllase is t [...] (324 aa)
      0.950
G4
G4; chlorophyll synthetase; Encodes a protein with chlorophyll synthase activity. This enzyme h [...] (387 aa)
      0.925
AT5G49000
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (372 aa)
       0.925
CH1
CH1 (CHLORINA 1); chlorophyllide a oxygenase; Encodes chlorophyllide a oxygenase which c [...] (536 aa)
      0.910
CLH2
ATCLH2; chlorophyllase; Encodes a chlorophyllase, the first enzyme in chlorophyll degradation. [...] (318 aa)
       0.899
AT5G16960
NADP-dependent oxidoreductase, putative; NADP-dependent oxidoreductase, putative; FUNCTIONS IN- [...] (346 aa)
       0.718
AT4G33360
terpene cyclase/mutase-related; terpene cyclase/mutase-related; FUNCTIONS IN- coenzyme binding, [...] (344 aa)
       0.718
AT2G43420
3-beta hydroxysteroid dehydrogenase/isomerase family protein; 3-beta hydroxysteroid dehydrogena [...] (561 aa)
       0.718
AT4G13250
short-chain dehydrogenase/reductase (SDR) family protein; short-chain dehydrogenase/reductase ( [...] (496 aa)
   0.669
ACD2
ACD2 (ACCELERATED CELL DEATH 2); red chlorophyll catabolite reductase; Mutants have spontaneous [...] (319 aa)
     0.656
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes

 Server load: very high (>100%)
Permalink