BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030707
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana
GN=At4g17560 PE=2 SV=1
Length = 225
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 99/161 (61%), Gaps = 23/161 (14%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFV 57
M LPQALH IPR+ TQ SK LGFS+ LS P + +SVS + G GF +
Sbjct: 3 MSFHRLPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSL 60
Query: 58 NAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAP 115
+ +V++ F+VRAE N EAE+ E VA A++E VEE E K
Sbjct: 61 DTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVEEVVEAKPT 104
Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RKPR+KLGD+MGILN++A+E +E RP+P+IRTGD+VEIKL
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKL 145
>sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana
GN=At5g47190 PE=2 SV=1
Length = 229
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 93/157 (59%), Gaps = 15/157 (9%)
Query: 3 SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVNA 59
S +LPQALH IPR T SK LG S++L R V+ +SVS + N GF +++
Sbjct: 5 SHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 62
Query: 60 QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
+ + F+ +AE + E E EAV + V E E E V EE K P K R
Sbjct: 63 KKRKEFIAKAEESTEGE---------TEAV-VENAVETEAEGEGEATVAAEEAKPPWKTR 112
Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
VKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKL
Sbjct: 113 VKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKL 149
>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea
GN=RPL19 PE=1 SV=2
Length = 233
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 96/165 (58%), Gaps = 21/165 (12%)
Query: 1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRGPFVSHGVS-------VSAKPIGW 51
M S+VLPQAL IP + S QC P K+LGF +R +S S+
Sbjct: 1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
Query: 52 NLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEE 111
N + ++SFVVR+EA + ++A ++ AV A+ ++ V EAE+E++
Sbjct: 61 NFSSIFSFPARNSFVVRSEAEDSSDA-----PAESVAVVAEEELPVESEAEAEER----- 110
Query: 112 VKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
PR+ RVKLGDIMGILNK+AV A+E RP+P IRTGD+V+I+L
Sbjct: 111 --PPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRL 153
>sp|Q32PZ9|CC130_RAT Coiled-coil domain-containing protein 130 OS=Rattus norvegicus
GN=Ccdc130 PE=2 SV=1
Length = 385
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 29 STVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEA 88
ST+ P +SH + W F +N+ ++ F + +A +E EEE+++A
Sbjct: 157 STLKKALPTLSH---IQEAQNAWKDDFALNSMLRRHFREKKKAMQE-------EEEKDQA 206
Query: 89 VQAQGDVVVAVEAESED 105
+QA+ ++ + + ESED
Sbjct: 207 LQAKANLAIPLVPESED 223
>sp|Q9D516|CC130_MOUSE Coiled-coil domain-containing protein 130 OS=Mus musculus
GN=Ccdc130 PE=2 SV=1
Length = 385
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 29 STVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEA 88
ST+ P +SH + W F +N+ ++ F + +A +E EEE+++A
Sbjct: 157 STLKKALPTLSH---IQEAQNAWKDDFALNSMLRRHFREKKKAMQE-------EEEKDQA 206
Query: 89 VQAQGDVVVAVEAESED 105
+QA+ + + + ESED
Sbjct: 207 LQAKASLAIPLVPESED 223
>sp|Q54JR2|ABCC3_DICDI ABC transporter C family member 3 OS=Dictyostelium discoideum
GN=abcC3 PE=3 SV=1
Length = 1412
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 29/143 (20%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGF--FVN 58
+G + + I +S T + + +L + PF + V + A I + +N
Sbjct: 598 VGKHLFHRCFKGILKSKTVILAANQLNYL------PFAHNTVVLKAGEISERGSYQQLIN 651
Query: 59 AQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
AQ + S +++A +E+ NE +E+++ +E ES++ V EE+ K KP
Sbjct: 652 AQKEFSGLLQAYGVDESAVNEDVEDDKE------------IE-ESDNIVVEEKTKPTEKP 698
Query: 119 RVKLGDIMGILNKRAVEASESER 141
+++ NK V S+ ER
Sbjct: 699 KLQ--------NKDGVLTSQEER 713
>sp|Q5EA37|CC130_BOVIN Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130
PE=2 SV=1
Length = 400
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 29 STVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEA 88
ST+ P +SH + W F +N+ ++ F + +A +E EEE+++A
Sbjct: 157 STLKKALPTLSH---IQEAQSAWKDDFALNSMLRKRFREKKKAMQE-------EEERDQA 206
Query: 89 VQAQGDVVVAVEAESED 105
+QA+ + + + E+ED
Sbjct: 207 LQAKASLAIPLVPETED 223
>sp|P29616|MYSC_CHICK Myosin heavy chain, cardiac muscle isoform (Fragment) OS=Gallus
gallus PE=1 SV=1
Length = 1102
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 59 AQVKDSFVVRAEANEEAEAN-ESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEE 111
A +K+ F+ EA E++EA + +EE+Q VQ + D+++ ++AE + + EE
Sbjct: 16 ANMKEEFLKLKEALEKSEARRKELEEKQVSLVQEKNDLLLQLQAEQDTLADAEE 69
>sp|Q96EQ9|PRDM9_MOUSE Histone-lysine N-methyltransferase PRDM9 OS=Mus musculus GN=Prdm9
PE=1 SV=2
Length = 843
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 99 VEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTG 149
V++++++ EVK KPR ++ K + + ES+R + ++RTG
Sbjct: 440 VDSQNKNDKASNEVKRKSKPRQRISTTFPSTLKEQMRSEESKRTVEELRTG 490
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,055,687
Number of Sequences: 539616
Number of extensions: 2165055
Number of successful extensions: 13831
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 12627
Number of HSP's gapped (non-prelim): 1037
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)