Query 030707
Match_columns 173
No_of_seqs 36 out of 38
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 04:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_R Ribosomal protein L19; 100.0 6.7E-39 2.3E-43 270.2 -2.2 159 1-172 1-172 (233)
2 3r8s_P 50S ribosomal protein L 98.0 3.9E-06 1.3E-10 64.5 4.2 44 124-172 2-49 (114)
3 3v2d_T 50S ribosomal protein L 97.9 1.1E-05 3.8E-10 64.4 4.8 46 122-172 3-52 (146)
4 2k9k_A TONB2; metal transport; 53.8 8.2 0.00028 26.6 2.5 33 127-159 66-99 (106)
5 3o27_A Putative uncharacterize 47.3 14 0.00048 26.2 2.8 24 145-171 38-61 (68)
6 1a62_A RHO; transcription term 44.7 16 0.00054 27.5 2.9 23 145-167 90-112 (130)
7 2nsc_A Trigger factor, TF; cha 43.2 15 0.00051 26.2 2.5 19 132-150 30-48 (109)
8 3lzk_A Fumarylacetoacetate hyd 43.0 24 0.0008 30.7 4.2 33 129-161 309-342 (359)
9 3esi_A Uncharacterized protein 41.7 30 0.001 26.0 4.1 25 138-162 70-94 (129)
10 4ayb_H DNA-directed RNA polyme 39.3 40 0.0014 24.0 4.2 27 145-171 56-83 (84)
11 3d6x_A (3R)-hydroxymyristoyl-[ 38.5 37 0.0013 23.9 4.0 19 144-162 99-117 (146)
12 2hc8_A PACS, cation-transporti 38.0 11 0.00036 27.2 1.1 29 141-169 25-55 (113)
13 2gll_A FABZ, (3R)-hydroxymyris 36.5 39 0.0013 25.4 4.0 22 141-162 120-141 (171)
14 1p9y_A Trigger factor, TF; alp 36.1 22 0.00075 25.8 2.5 23 127-150 29-51 (121)
15 2d3o_1 Trigger factor, TF; rib 36.0 18 0.00061 25.9 2.0 23 127-150 25-47 (112)
16 1cz4_A VCP-like ATPase; double 35.3 32 0.0011 26.9 3.5 21 128-155 25-45 (185)
17 2f41_A Transcription factor FA 33.6 46 0.0016 22.9 3.7 41 119-159 37-86 (121)
18 3tiw_A Transitional endoplasmi 33.1 32 0.0011 27.2 3.2 20 129-155 41-60 (187)
19 2f3x_A Transcription factor FA 33.0 48 0.0016 24.7 4.0 43 117-159 71-122 (157)
20 3aqy_A Beta-1,3-glucan-binding 32.1 39 0.0013 24.7 3.3 23 144-166 67-89 (106)
21 3d0f_A Penicillin-binding 1 tr 31.5 20 0.0007 25.0 1.6 10 146-155 84-93 (106)
22 3qwz_A Transitional endoplasmi 30.1 36 0.0012 27.5 3.1 20 129-155 44-63 (211)
23 2kij_A Copper-transporting ATP 29.7 15 0.00051 26.8 0.7 14 142-155 38-51 (124)
24 3hu3_A Transitional endoplasmi 29.6 35 0.0012 29.9 3.2 21 128-155 40-60 (489)
25 2kbn_A Conserved protein; nucl 29.5 55 0.0019 23.1 3.7 21 142-162 57-78 (109)
26 3kd4_A Putative protease; stru 28.5 33 0.0011 30.2 2.8 19 141-159 101-119 (506)
27 1u1z_A (3R)-hydroxymyristoyl-[ 27.5 68 0.0023 23.8 4.0 23 140-162 115-137 (168)
28 1xjv_A Protection of telomeres 27.5 60 0.002 26.5 4.0 16 140-155 61-77 (294)
29 4h4g_A (3R)-hydroxymyristoyl-[ 27.3 62 0.0021 24.3 3.8 20 143-162 108-127 (160)
30 1z6b_A Pffabz, fatty acid synt 26.8 40 0.0014 24.2 2.6 22 141-162 102-123 (154)
31 3m7n_A Putative uncharacterize 26.1 9.2 0.00032 29.5 -1.1 34 125-158 91-124 (179)
32 4i83_A 3-hydroxyacyl-[acyl-car 26.1 70 0.0024 23.3 3.8 33 121-162 91-123 (152)
33 2fhd_A RAD9 homolog, DNA repai 26.1 32 0.0011 27.6 2.1 22 145-167 63-84 (153)
34 1q1s_A Large T antigen; import 25.5 22 0.00076 21.2 0.8 12 109-120 11-22 (26)
35 3ie4_A GRAM-negative binding p 25.2 61 0.0021 23.8 3.3 24 143-166 65-88 (107)
36 2nn6_G Exosome complex exonucl 25.0 48 0.0017 28.0 3.1 29 141-169 166-194 (289)
37 1q7h_A Conserved hypothetical 24.7 71 0.0024 23.5 3.6 24 144-169 99-122 (153)
38 2kha_A Beta-1,3-glucan-binding 24.5 61 0.0021 24.7 3.3 23 144-166 76-98 (130)
39 2l66_A SSO7C4, transcriptional 24.4 45 0.0016 20.9 2.2 13 145-157 25-37 (53)
40 2e6z_A Transcription elongatio 24.4 35 0.0012 22.2 1.7 12 144-155 6-17 (59)
41 2jov_A Hypothetical protein CP 23.9 34 0.0012 24.8 1.7 22 132-153 36-57 (85)
42 1so2_A CGMP-inhibited 3',5'-cy 23.7 27 0.00091 31.0 1.3 24 108-131 389-414 (420)
43 1d1n_A Initiation factor 2; be 23.3 34 0.0012 25.2 1.6 14 142-155 78-91 (99)
44 1qzg_A Protection of telomeres 23.0 44 0.0015 27.0 2.3 17 139-155 93-110 (187)
45 1yfb_A Transition state regula 22.2 56 0.0019 21.5 2.4 13 145-157 35-47 (59)
46 1zuy_A Myosin-5 isoform; SH3 d 21.9 39 0.0014 20.2 1.5 14 145-158 19-32 (58)
47 3dkb_A Tumor necrosis factor, 21.8 26 0.00088 31.7 0.8 12 1-12 21-32 (390)
48 3e0e_A Replication protein A; 21.6 46 0.0016 23.0 2.0 16 145-160 63-78 (97)
49 3zv0_C H/ACA ribonucleoprotein 21.3 85 0.0029 25.5 3.7 40 128-169 79-127 (195)
50 2oyn_A Hypothetical protein MJ 20.8 21 0.00072 28.0 0.0 20 143-162 119-138 (146)
51 1eik_A RNA polymerase subunit 20.8 43 0.0015 23.8 1.6 15 145-159 50-64 (77)
52 1o6a_A Putative flagellar moto 20.3 75 0.0026 22.3 2.8 16 145-160 39-54 (96)
53 3bnv_A CJ0977; virulence facto 20.0 1.2E+02 0.0041 22.2 4.0 45 118-162 63-116 (152)
No 1
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=6.7e-39 Score=270.24 Aligned_cols=159 Identities=42% Similarity=0.573 Sum_probs=45.6
Q ss_pred CCccccccccccccCC-CCCCCC-CcceeccccccCCCcc----ccceeeeccCCCccccceeccc----ccceeEEeec
Q 030707 1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRGPFV----SHGVSVSAKPIGWNLGFFVNAQ----VKDSFVVRAE 70 (173)
Q Consensus 1 Mas~vLPQAL~~iprs-p~q~~p-pk~LgfSS~~~r~s~~----~srls~s~~~~s~~~~~~~~~~----~~~~fVvrAe 70 (173)
||||+|||||+++||+ |+|||| ||+||||+.+.|.-++ ++++++|+. +|++|||+|++. +|++||+|||
T Consensus 1 m~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~f~~r~~ 79 (233)
T 3bbo_R 1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRA-SSNLFSSNFSSIFSFPARNSFVVRSE 79 (233)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccchhhhccccccccCCCCChhhcccccccccccccccccccceEeecc-ccccccccccchhccccccceeEeec
Confidence 9999999999999997 558876 8999998665443222 235666654 567777777665 8999999999
Q ss_pred cchhhhhchhhHHHhHHHHhhccccchhhccccchhhhhhhccCCCCCccchhhHHhHhhHHHHHHhhhcCCCCCCCCCc
Q 030707 71 ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGD 150 (173)
Q Consensus 71 a~~ea~~~~~~~e~~~E~~~~~~d~v~~~Ege~~~v~eeee~~pprkkrkk~g~IM~ILnkeavee~~~~R~iPdiRpGd 150 (173)
+++. ++++. ++.+++.++|+|.+..+|+ ++++|+|+++|||++|++||+++|++....+.+|+|++||
T Consensus 80 ~~~~--~~~~~---------~~~~~~~e~~~~~~~~~~~-~~~~p~~~~~k~~~iM~~L~re~ie~~q~kkdiPeFr~GD 147 (233)
T 3bbo_R 80 AEDS--SDAPA---------ESVAVVAEEELPVESEAEA-EERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGD 147 (233)
T ss_dssp -----------------------------------------------------CCSSSCSTTHHHHTTCCSCCSSSCCCS
T ss_pred cccC--CCCcc---------cchhhcccccchhhhhhcc-ccCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCccCCCC
Confidence 9542 22221 1222343444443333333 3399999999999999999999999999999999999999
Q ss_pred EEEEEEeecccce---eeeeEeeec
Q 030707 151 VVEIKLVNAVFDY---LYNVLCYSF 172 (173)
Q Consensus 151 IVelkvEVPEnkr---~~~~~c~~~ 172 (173)
+|+|.+.++|||. .|.|+||..
T Consensus 148 tV~V~vkI~E~KeRiQ~FeGVVIar 172 (233)
T 3bbo_R 148 IVQIRLEVPENKRRLSVYKGIVISR 172 (233)
T ss_dssp CCCCCCCBCCCSSCCSCCBCCCCCS
T ss_pred EEEEEEEeccCcceecceEEEEEEE
Confidence 9999999999874 489999974
No 2
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=98.02 E-value=3.9e-06 Score=64.46 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=36.7
Q ss_pred hHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeecc-cc---eeeeeEeeec
Q 030707 124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAV-FD---YLYNVLCYSF 172 (173)
Q Consensus 124 ~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPE-nk---r~~~~~c~~~ 172 (173)
+||+.|++++| .+.+|+|+|||+|.+.+.++| ++ -.|.|+||+-
T Consensus 2 ~~i~~~e~~~~-----~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~ 49 (114)
T 3r8s_P 2 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAI 49 (114)
T ss_dssp CHHHHHHGGGC-----CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hHHHHHHHHHh-----ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEE
Confidence 47777777776 479999999999999999998 44 3699999974
No 3
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=97.89 E-value=1.1e-05 Score=64.38 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=37.3
Q ss_pred hhhHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeccc-c---eeeeeEeeec
Q 030707 122 LGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVF-D---YLYNVLCYSF 172 (173)
Q Consensus 122 ~g~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPEn-k---r~~~~~c~~~ 172 (173)
|.+||+.++++.+ ...+|+|+|||+|.|.+.+.|. + -.|.|+||+.
T Consensus 3 ~~~li~~ie~~~~-----~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~r 52 (146)
T 3v2d_T 3 RGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRI 52 (146)
T ss_dssp HHHHHHHHHHTTC-----CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHh-----hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEE
Confidence 4567777777665 4799999999999999999974 3 3699999974
No 4
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=53.76 E-value=8.2 Score=26.64 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=27.1
Q ss_pred hHhhHHHHHHhhhcCCCCCCCCCcEEEEE-Eeec
Q 030707 127 GILNKRAVEASESERPIPDIRTGDVVEIK-LVNA 159 (173)
Q Consensus 127 ~ILnkeavee~~~~R~iPdiRpGdIVelk-vEVP 159 (173)
.+||++|++.+++-+..|...-|.-|..+ +.+|
T Consensus 66 ~~ld~aAl~av~~~~f~P~~~~G~~v~~~~~~~p 99 (106)
T 2k9k_A 66 RMFEREAMQALKKWKYQPQIVDGKAIEQPGQTVT 99 (106)
T ss_dssp SSSHHHHHHHHHHCCCCCCCCSSCCSCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCeEeEEEEEEEE
Confidence 47999999999999999998888776655 5555
No 5
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=47.31 E-value=14 Score=26.22 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=17.4
Q ss_pred CCCCCcEEEEEEeecccceeeeeEeee
Q 030707 145 DIRTGDVVEIKLVNAVFDYLYNVLCYS 171 (173)
Q Consensus 145 diRpGdIVelkvEVPEnkr~~~~~c~~ 171 (173)
+|++||.+++.+| ++-.--++||.
T Consensus 38 gIk~gD~fel~ve---~kdgeIvLcyk 61 (68)
T 3o27_A 38 DIKPDDTFILNME---QKDGDIVLSYK 61 (68)
T ss_dssp TCCTTCCEEEEEE---EETTEEEEEEE
T ss_pred CCCCCCEEEEEEe---cCCCeEEEEeh
Confidence 7999999999998 22222357875
No 6
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=44.65 E-value=16 Score=27.49 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=17.4
Q ss_pred CCCCCcEEEEEEeecccceeeee
Q 030707 145 DIRTGDVVEIKLVNAVFDYLYNV 167 (173)
Q Consensus 145 diRpGdIVelkvEVPEnkr~~~~ 167 (173)
.+|+||+|..++--|-..-+|..
T Consensus 90 ~lr~GD~V~g~vr~~~~~ek~~~ 112 (130)
T 1a62_A 90 NLRTGDTISGKIRPPKEGERYFA 112 (130)
T ss_dssp TCCTTCEEEEEEECCCTTCCSEE
T ss_pred CCCCCCEEEEEEeCCCCCCcccc
Confidence 58999999999998844444443
No 7
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=43.20 E-value=15 Score=26.17 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.4
Q ss_pred HHHHHhhhcCCCCCCCCCc
Q 030707 132 RAVEASESERPIPDIRTGD 150 (173)
Q Consensus 132 eavee~~~~R~iPdiRpGd 150 (173)
+++.++++.-.||.||+|-
T Consensus 30 ~~~~~~~k~~~ipGFRkGK 48 (109)
T 2nsc_A 30 KAVRYLNQRVEIPGFRKGR 48 (109)
T ss_dssp HHHHHHHTTCCCTTSCTTC
T ss_pred HHHHHHhccCCCCCcCCCC
Confidence 4667777778899999994
No 8
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=42.99 E-value=24 Score=30.73 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=21.4
Q ss_pred hhHHHHHHhhhc-CCCCCCCCCcEEEEEEeeccc
Q 030707 129 LNKRAVEASESE-RPIPDIRTGDVVEIKLVNAVF 161 (173)
Q Consensus 129 Lnkeavee~~~~-R~iPdiRpGdIVelkvEVPEn 161 (173)
|+...+|.+..- ...|-+++||+|+|+++-+..
T Consensus 309 ~E~~~~~~~~~g~~~~~fL~~GD~V~i~~~~~~g 342 (359)
T 3lzk_A 309 AELRMIETIEGGAPKTQFLKFGDVVRIEMKDRTG 342 (359)
T ss_dssp HHHHHHHHHHHSSCCSCCBCTTCEEEEEEBCTTS
T ss_pred hhhhhhhhhccCCCCCCcCCCCCEEEEEEEcCCC
Confidence 333455555443 223689999999999985443
No 9
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=41.66 E-value=30 Score=25.96 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=19.7
Q ss_pred hhcCCCCCCCCCcEEEEEEeecccc
Q 030707 138 ESERPIPDIRTGDVVEIKLVNAVFD 162 (173)
Q Consensus 138 ~~~R~iPdiRpGdIVelkvEVPEnk 162 (173)
++.|=.=.++|||.++|.+++-..+
T Consensus 70 ~~vkF~~~V~PGD~l~l~v~~~~~~ 94 (129)
T 3esi_A 70 ENIKFQQPILPGKTLRLVLIWHAGK 94 (129)
T ss_dssp EEEEECSCCCTTCEEEEEEEEETTT
T ss_pred ceeEECcccCCCCEEEEEEEEEecC
Confidence 4445556789999999999998766
No 10
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=39.29 E-value=40 Score=24.03 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=16.8
Q ss_pred CCCCCcEEEEEEeecc-cceeeeeEeee
Q 030707 145 DIRTGDVVEIKLVNAV-FDYLYNVLCYS 171 (173)
Q Consensus 145 diRpGdIVelkvEVPE-nkr~~~~~c~~ 171 (173)
+++|||||+|.=-=+. .+..|--+|++
T Consensus 56 g~k~GdVvkI~R~S~tag~~~~YR~vv~ 83 (84)
T 4ayb_H 56 NAKPGDIIRIIRKSQLYGEVVSYRYVIS 83 (84)
T ss_dssp TCCTTCEEEEEEEETTTEEEEEEEEEEC
T ss_pred CCCCCCEEEEEEcCCCCCccEEEEEEeC
Confidence 6899999987644332 22455555653
No 11
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=38.49 E-value=37 Score=23.94 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=15.0
Q ss_pred CCCCCCcEEEEEEeecccc
Q 030707 144 PDIRTGDVVEIKLVNAVFD 162 (173)
Q Consensus 144 PdiRpGdIVelkvEVPEnk 162 (173)
=+++|||.+.+++++-+.+
T Consensus 99 ~pV~pGd~l~~~~~v~~~~ 117 (146)
T 3d6x_A 99 NPVRPGDRLDYEMSVVKNR 117 (146)
T ss_dssp SCCCTTCEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEEEEEEee
Confidence 3468999999999987543
No 12
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=38.05 E-value=11 Score=27.19 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=18.5
Q ss_pred CCCCCCCCCcEEEEEE--eecccceeeeeEe
Q 030707 141 RPIPDIRTGDVVEIKL--VNAVFDYLYNVLC 169 (173)
Q Consensus 141 R~iPdiRpGdIVelkv--EVPEnkr~~~~~c 169 (173)
-+.-+|+|||||.|+- .+|-.-++..+-|
T Consensus 25 i~~~~l~~GDiv~v~~G~~iPaDg~v~~g~~ 55 (113)
T 2hc8_A 25 VPVEEVAVGDIVIVRPGEKIPVDGVVVEGES 55 (113)
T ss_dssp EEGGGCCTTCEEEECTTCBCCSEEEEEECCE
T ss_pred EEHHHCCCCCEEEECCCCEEeeeEEEEEceE
Confidence 3455899999999973 3444445554444
No 13
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=36.49 E-value=39 Score=25.40 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=16.3
Q ss_pred CCCCCCCCCcEEEEEEeecccc
Q 030707 141 RPIPDIRTGDVVEIKLVNAVFD 162 (173)
Q Consensus 141 R~iPdiRpGdIVelkvEVPEnk 162 (173)
|=.=+++|||.+.+++++-..+
T Consensus 120 kF~~pV~PGD~L~i~v~v~~~~ 141 (171)
T 2gll_A 120 KFRIPVTPGDRLEYHLEVLKHK 141 (171)
T ss_dssp EECSCCCTTCEEEEEEEEEEES
T ss_pred EECCccCCCCEEEEEEEEEEEe
Confidence 3334568999999999987543
No 14
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=36.10 E-value=22 Score=25.79 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=16.7
Q ss_pred hHhhHHHHHHhhhcCCCCCCCCCc
Q 030707 127 GILNKRAVEASESERPIPDIRTGD 150 (173)
Q Consensus 127 ~ILnkeavee~~~~R~iPdiRpGd 150 (173)
..+| +++.++++.=.||.||+|-
T Consensus 29 ~~~~-~~~~~~~k~v~ipGFRkGK 51 (121)
T 1p9y_A 29 TAVK-SELVNVAKKVRIDGLRKGK 51 (121)
T ss_dssp HHHH-HHHHHHHTTCCCTTSCTTC
T ss_pred HHHH-HHHHHHHhhCccCCcCCCC
Confidence 3444 4566677777899999994
No 15
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=36.05 E-value=18 Score=25.87 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=16.6
Q ss_pred hHhhHHHHHHhhhcCCCCCCCCCc
Q 030707 127 GILNKRAVEASESERPIPDIRTGD 150 (173)
Q Consensus 127 ~ILnkeavee~~~~R~iPdiRpGd 150 (173)
..++ +++.++++.=.||.||+|=
T Consensus 25 ~~~~-~~~~~~~k~~~ipGFRkGK 47 (112)
T 2d3o_1 25 RAYD-QVWAGLARDVRVPGFRPGK 47 (112)
T ss_dssp HHHH-HHHHHHHTTSCBTTBCTTC
T ss_pred HHHH-HHHHHHHhhCCCCCcCCCC
Confidence 3344 4566677777899999994
No 16
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=35.26 E-value=32 Score=26.87 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=17.8
Q ss_pred HhhHHHHHHhhhcCCCCCCCCCcEEEEE
Q 030707 128 ILNKRAVEASESERPIPDIRTGDVVEIK 155 (173)
Q Consensus 128 ILnkeavee~~~~R~iPdiRpGdIVelk 155 (173)
.|+.++|+++. +++||+|+|+
T Consensus 25 rl~p~~m~~Lg-------l~~GD~V~I~ 45 (185)
T 1cz4_A 25 RLDESSRRLLD-------AEIGDVVEIE 45 (185)
T ss_dssp EECHHHHHTTC-------CCTTCEEEEE
T ss_pred EECHHHHHHcC-------CCCCCEEEEE
Confidence 37888888875 9999999996
No 17
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=33.56 E-value=46 Score=22.93 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=24.2
Q ss_pred ccchhhHHhHhhHHHHHHhh---------hcCCCCCCCCCcEEEEEEeec
Q 030707 119 RVKLGDIMGILNKRAVEASE---------SERPIPDIRTGDVVEIKLVNA 159 (173)
Q Consensus 119 rkk~g~IM~ILnkeavee~~---------~~R~iPdiRpGdIVelkvEVP 159 (173)
...-+++|.+++-=+.-... +.|=+=+.+|||.|.++.+|=
T Consensus 37 i~hGg~~~alad~~~~~~~~~~~~~~~~~~i~F~~Pv~~Gd~l~~~a~v~ 86 (121)
T 2f41_A 37 IARGHHLFAQANSLAVAVIDDELALTASADIRFTRQVKQGERVVAKAKVT 86 (121)
T ss_dssp BBCHHHHHHHHHHHHHHTC---CCCEEEEEEEECSCCBTTCEEEEEEEEE
T ss_pred EEchhHHHHHHHHHHHHhcCCceEEEEEeeEEEeCCcCCCCEEEEEEEEE
Confidence 34455566665543322211 223344678999999999997
No 18
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=33.13 E-value=32 Score=27.24 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.1
Q ss_pred hhHHHHHHhhhcCCCCCCCCCcEEEEE
Q 030707 129 LNKRAVEASESERPIPDIRTGDVVEIK 155 (173)
Q Consensus 129 Lnkeavee~~~~R~iPdiRpGdIVelk 155 (173)
|+.+.|+++. |.+||+|+|+
T Consensus 41 l~p~~m~~Lg-------l~~GD~V~I~ 60 (187)
T 3tiw_A 41 LSQPKMDELQ-------LFRGDTVLLK 60 (187)
T ss_dssp ECHHHHHHHT-------CCTTCEEEEE
T ss_pred ECHHHHHHcC-------CCCCCEEEEE
Confidence 8899999985 9999999998
No 19
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=33.03 E-value=48 Score=24.68 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCccchhhHHhHhhHHHHHHhh---------hcCCCCCCCCCcEEEEEEeec
Q 030707 117 KPRVKLGDIMGILNKRAVEASE---------SERPIPDIRTGDVVEIKLVNA 159 (173)
Q Consensus 117 kkrkk~g~IM~ILnkeavee~~---------~~R~iPdiRpGdIVelkvEVP 159 (173)
.....-+++|.+++-=+.-... +.|=+=+++|||.|.++.+|=
T Consensus 71 ~gi~hGg~~~a~ad~~~~~~~~~~~~~t~~~~i~F~rPV~~GD~L~a~a~v~ 122 (157)
T 2f3x_A 71 NQIARGHHLFAQANSLAVAVIDDELALTASADIRFTRQVKQGERVVAKAKVT 122 (157)
T ss_dssp TCBBCHHHHHHHHHHHHHHTSCSSCCEEEEEEEEECSCCBTTCEEEEEEEEE
T ss_pred CCEEcHHHHHHHHHHHHHHHcCCceEEEEEEEEEEeCCCCCCCEEEEEEEEE
Confidence 3344566666666654432221 122334678999999999997
No 20
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=32.13 E-value=39 Score=24.72 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=18.5
Q ss_pred CCCCCCcEEEEEEeecccceeee
Q 030707 144 PDIRTGDVVEIKLVNAVFDYLYN 166 (173)
Q Consensus 144 PdiRpGdIVelkvEVPEnkr~~~ 166 (173)
..||+||+|...+-|=.|...|+
T Consensus 67 ~~lk~GD~i~Yw~~V~~~g~~y~ 89 (106)
T 3aqy_A 67 VKLKLGDKIYFWTYVIKDGLGYR 89 (106)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEE
T ss_pred eEeCCCCEEEEEEEEEECCCceE
Confidence 57999999999999876665554
No 21
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=31.52 E-value=20 Score=25.04 Aligned_cols=10 Identities=40% Similarity=0.889 Sum_probs=9.6
Q ss_pred CCCCcEEEEE
Q 030707 146 IRTGDVVEIK 155 (173)
Q Consensus 146 iRpGdIVelk 155 (173)
|++||||.|+
T Consensus 84 l~~GdvI~V~ 93 (106)
T 3d0f_A 84 IRPGALIRVK 93 (106)
T ss_dssp CCTTEEEEEE
T ss_pred CCCCCEEEEE
Confidence 8999999998
No 22
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=30.09 E-value=36 Score=27.46 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.0
Q ss_pred hhHHHHHHhhhcCCCCCCCCCcEEEEE
Q 030707 129 LNKRAVEASESERPIPDIRTGDVVEIK 155 (173)
Q Consensus 129 Lnkeavee~~~~R~iPdiRpGdIVelk 155 (173)
|+.+.|+++ .|.+||+|+|+
T Consensus 44 l~p~~m~~L-------gl~~GD~V~I~ 63 (211)
T 3qwz_A 44 LSQPKMDEL-------QLFRGDTVLLK 63 (211)
T ss_dssp ECHHHHHHH-------TCCBTCEEEEE
T ss_pred ECHHHHHHc-------CCCCCCEEEEe
Confidence 788999988 58999999998
No 23
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=29.72 E-value=15 Score=26.75 Aligned_cols=14 Identities=14% Similarity=0.534 Sum_probs=11.6
Q ss_pred CCCCCCCCcEEEEE
Q 030707 142 PIPDIRTGDVVEIK 155 (173)
Q Consensus 142 ~iPdiRpGdIVelk 155 (173)
++-+|.|||||.|+
T Consensus 38 ~~~~l~~GDiv~v~ 51 (124)
T 2kij_A 38 DVELVQRGDIIKVV 51 (124)
T ss_dssp ETTTCCTTCEEECC
T ss_pred eHHHCCCCCEEEEC
Confidence 45589999999986
No 24
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=29.62 E-value=35 Score=29.93 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.7
Q ss_pred HhhHHHHHHhhhcCCCCCCCCCcEEEEE
Q 030707 128 ILNKRAVEASESERPIPDIRTGDVVEIK 155 (173)
Q Consensus 128 ILnkeavee~~~~R~iPdiRpGdIVelk 155 (173)
.|+.+.|+++. |++||+|+|+
T Consensus 40 ~~~~~~~~~l~-------~~~gd~v~~~ 60 (489)
T 3hu3_A 40 SLSQPKMDELQ-------LFRGDTVLLK 60 (489)
T ss_dssp EECHHHHHHHT-------CCTTCEEEEE
T ss_pred EECHHHHHHcC-------CCCCCEEEEe
Confidence 47889999886 9999999998
No 25
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=29.51 E-value=55 Score=23.14 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=16.5
Q ss_pred CCCCCCCCcEEEEE-Eeecccc
Q 030707 142 PIPDIRTGDVVEIK-LVNAVFD 162 (173)
Q Consensus 142 ~iPdiRpGdIVelk-vEVPEnk 162 (173)
..++|.+||+|+|+ ..+=+.+
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~~~ 78 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGEYN 78 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEEET
T ss_pred cccccCCCCEEEEEEEEEEEEC
Confidence 46799999999999 6665544
No 26
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=28.49 E-value=33 Score=30.15 Aligned_cols=19 Identities=5% Similarity=0.029 Sum_probs=16.4
Q ss_pred CCCCCCCCCcEEEEEEeec
Q 030707 141 RPIPDIRTGDVVEIKLVNA 159 (173)
Q Consensus 141 R~iPdiRpGdIVelkvEVP 159 (173)
=.+|++|+||||+++.++=
T Consensus 101 ~~~p~v~~G~iIey~Y~i~ 119 (506)
T 3kd4_A 101 VVHTGLELGATIYLDYSII 119 (506)
T ss_dssp EECCSCCTTCEEEEEEEEE
T ss_pred EEcCCCCCCcEEEEEEEEE
Confidence 3799999999999988763
No 27
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=27.54 E-value=68 Score=23.76 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=16.8
Q ss_pred cCCCCCCCCCcEEEEEEeecccc
Q 030707 140 ERPIPDIRTGDVVEIKLVNAVFD 162 (173)
Q Consensus 140 ~R~iPdiRpGdIVelkvEVPEnk 162 (173)
.|=.=+++|||.+.+++++-+.+
T Consensus 115 vrF~~pV~pGD~L~~~v~v~~~~ 137 (168)
T 1u1z_A 115 LRFRQPVLPGDQLQLHAKFISVK 137 (168)
T ss_dssp EEECSCCCTTCEEEEEEEEEEEE
T ss_pred EEECCcCCCCCEEEEEEEEEEEe
Confidence 33344567999999999987654
No 28
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=27.54 E-value=60 Score=26.47 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=13.3
Q ss_pred cCCCCCC-CCCcEEEEE
Q 030707 140 ERPIPDI-RTGDVVEIK 155 (173)
Q Consensus 140 ~R~iPdi-RpGdIVelk 155 (173)
..-+|.+ +.||||.|+
T Consensus 61 ~~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 61 YEALPIIYKNGDIVRFH 77 (294)
T ss_dssp GGGSCCCCSTTCEEEEE
T ss_pred hHHCCCCCCCCCEEEEE
Confidence 3458999 999999986
No 29
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=27.34 E-value=62 Score=24.33 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=14.9
Q ss_pred CCCCCCCcEEEEEEeecccc
Q 030707 143 IPDIRTGDVVEIKLVNAVFD 162 (173)
Q Consensus 143 iPdiRpGdIVelkvEVPEnk 162 (173)
.=.++|||.+.+++++-..+
T Consensus 108 ~~~V~PGd~L~i~v~~~~~~ 127 (160)
T 4h4g_A 108 KRVVEPGDQLILNVTFERYI 127 (160)
T ss_dssp CSCCCTTCEEEEEEEEEEEE
T ss_pred CcccCCCCEEEEEEEEEEee
Confidence 33468999999999876443
No 30
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=26.80 E-value=40 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=16.6
Q ss_pred CCCCCCCCCcEEEEEEeecccc
Q 030707 141 RPIPDIRTGDVVEIKLVNAVFD 162 (173)
Q Consensus 141 R~iPdiRpGdIVelkvEVPEnk 162 (173)
|=.=+++|||.+.+++++-+.+
T Consensus 102 rF~~pV~pGd~l~~~~~v~~~~ 123 (154)
T 1z6b_A 102 RWKKPVLPGDTLTMQANLISFK 123 (154)
T ss_dssp EECSCCCTTCEEEEEEEEEEEE
T ss_pred EEccccCCCCEEEEEEEEEEee
Confidence 3344678999999999987544
No 31
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=26.12 E-value=9.2 Score=29.55 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=22.3
Q ss_pred HHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEee
Q 030707 125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLVN 158 (173)
Q Consensus 125 IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEV 158 (173)
+.++|....+..-+....-.-|++||+|..||.-
T Consensus 91 ~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 91 GIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp EEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred eeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 4555555555433334444569999999999875
No 32
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=26.08 E-value=70 Score=23.29 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=21.3
Q ss_pred chhhHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeecccc
Q 030707 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVFD 162 (173)
Q Consensus 121 k~g~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPEnk 162 (173)
+.+.+++| +.++=.++ ++|||.+.+++++-..+
T Consensus 91 ~~~~l~gi------~~vkF~~p---V~PGd~L~i~~~v~~~~ 123 (152)
T 4i83_A 91 EFFFFAGI------DEARFKRQ---VIPGDQLVFEVELLTSR 123 (152)
T ss_dssp CCCEEEEE------CSEEECSC---CCTTCEEEEEEEEEEEE
T ss_pred ceEEEeee------cEEEEccc---cCCCCEEEEEEEEEEee
Confidence 34555554 33444444 58999999999987543
No 33
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=26.06 E-value=32 Score=27.58 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=17.4
Q ss_pred CCCCCcEEEEEEeecccceeeee
Q 030707 145 DIRTGDVVEIKLVNAVFDYLYNV 167 (173)
Q Consensus 145 diRpGdIVelkvEVPEnkr~~~~ 167 (173)
+||.||+|++- .+|....+-.|
T Consensus 63 eLRiGD~VKVd-~vpK~~hiVvG 84 (153)
T 2fhd_A 63 FLKKGDVVQST-RLGKIKHTVVK 84 (153)
T ss_dssp CCCTTCEEEET-TSTTCCEEEEE
T ss_pred eeecCCEEEEC-CCCCccEEEEE
Confidence 79999999999 88877655444
No 34
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=25.52 E-value=22 Score=21.17 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=9.3
Q ss_pred hhhccCCCCCcc
Q 030707 109 EEEVKAPRKPRV 120 (173)
Q Consensus 109 eee~~pprkkrk 120 (173)
....+||+|||+
T Consensus 11 s~~sTPPKkKrk 22 (26)
T 1q1s_A 11 AQHAAPPKKKRK 22 (26)
T ss_pred ccccCCCccccc
Confidence 355689999987
No 35
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=25.21 E-value=61 Score=23.82 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=19.1
Q ss_pred CCCCCCCcEEEEEEeecccceeee
Q 030707 143 IPDIRTGDVVEIKLVNAVFDYLYN 166 (173)
Q Consensus 143 iPdiRpGdIVelkvEVPEnkr~~~ 166 (173)
-..+++||+|...+-|=-|...|+
T Consensus 65 ~~~lk~GD~I~Ywv~V~~ng~~y~ 88 (107)
T 3ie4_A 65 ITALKPGDTLYYWTYVIYNGLGYR 88 (107)
T ss_dssp SCCCCTTCEEEEEEEEEETTEEEE
T ss_pred CceeCCCCEEEEEEEEEECCcceE
Confidence 357999999999999987765553
No 36
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=24.96 E-value=48 Score=28.04 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=21.1
Q ss_pred CCCCCCCCCcEEEEEEeecccceeeeeEe
Q 030707 141 RPIPDIRTGDVVEIKLVNAVFDYLYNVLC 169 (173)
Q Consensus 141 R~iPdiRpGdIVelkvEVPEnkr~~~~~c 169 (173)
+--|-||+||+|.-||..-....-|.-.|
T Consensus 166 ~~r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 166 RNRPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp CSSSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred hhhhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 34478999999999998765544454555
No 37
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=24.75 E-value=71 Score=23.50 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=18.8
Q ss_pred CCCCCCcEEEEEEeecccceeeeeEe
Q 030707 144 PDIRTGDVVEIKLVNAVFDYLYNVLC 169 (173)
Q Consensus 144 PdiRpGdIVelkvEVPEnkr~~~~~c 169 (173)
++|+.||+|.|.-+ +..-+..|+|
T Consensus 99 ~~~~~gd~V~V~~~--~g~~ia~G~~ 122 (153)
T 1q7h_A 99 DSIRKGDMIFVKSS--KGYFIAVGMA 122 (153)
T ss_dssp TTCCTTCEEEEEET--TSCEEEEEEE
T ss_pred CceeCCCEEEEEEC--CCCEEEEEEE
Confidence 58999999998776 6666777665
No 38
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=24.49 E-value=61 Score=24.67 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=18.6
Q ss_pred CCCCCCcEEEEEEeecccceeee
Q 030707 144 PDIRTGDVVEIKLVNAVFDYLYN 166 (173)
Q Consensus 144 PdiRpGdIVelkvEVPEnkr~~~ 166 (173)
..|++||+|...+-|=.|...|+
T Consensus 76 ~~Lk~GD~IyYw~~V~~~g~~y~ 98 (130)
T 2kha_A 76 AKLKLGDKIYFWTYVIKDGLGYR 98 (130)
T ss_dssp CCCCTTCEEEEEEEEESSSCEEE
T ss_pred eeeCCCCEEEEEEEEEECCCceE
Confidence 57999999999999976665444
No 39
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=24.41 E-value=45 Score=20.90 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=11.2
Q ss_pred CCCCCcEEEEEEe
Q 030707 145 DIRTGDVVEIKLV 157 (173)
Q Consensus 145 diRpGdIVelkvE 157 (173)
+|++||.|++.++
T Consensus 25 gi~~Gd~v~i~~~ 37 (53)
T 2l66_A 25 QIKEGDLVKVTFD 37 (53)
T ss_dssp CCCTTCEEEEEEC
T ss_pred CcCCCCEEEEEEE
Confidence 7899999998874
No 40
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.36 E-value=35 Score=22.20 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=9.6
Q ss_pred CCCCCCcEEEEE
Q 030707 144 PDIRTGDVVEIK 155 (173)
Q Consensus 144 PdiRpGdIVelk 155 (173)
.+|.+||.|+|.
T Consensus 6 ~~f~~GD~V~V~ 17 (59)
T 2e6z_A 6 SGFQPGDNVEVC 17 (59)
T ss_dssp SSCCTTSEEEEC
T ss_pred ccCCCCCEEEEe
Confidence 468999999873
No 41
>2jov_A Hypothetical protein CPE0013; alpha + beta sandwich, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens} SCOP: d.349.1.1
Probab=23.94 E-value=34 Score=24.84 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=15.1
Q ss_pred HHHHHhhhcCCCCCCCCCcEEE
Q 030707 132 RAVEASESERPIPDIRTGDVVE 153 (173)
Q Consensus 132 eavee~~~~R~iPdiRpGdIVe 153 (173)
+.|+++++...--+++.||||-
T Consensus 36 e~m~~l~~i~V~APV~iGDVIi 57 (85)
T 2jov_A 36 DFSNVLSRLYVGVPTKSGNVVC 57 (85)
T ss_dssp HHHHHHTTCEECCCCCSSEEEE
T ss_pred HHHHHHhCCEEcCCcccCCEEE
Confidence 3445555566667899999873
No 42
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=23.68 E-value=27 Score=30.96 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=8.6
Q ss_pred hhhhccCCCCC-c-cchhhHHhHhhH
Q 030707 108 EEEEVKAPRKP-R-VKLGDIMGILNK 131 (173)
Q Consensus 108 eeee~~pprkk-r-kk~g~IM~ILnk 131 (173)
++..++|+|+| | +.+-+|||-|..
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (420)
T 1so2_A 389 NNLNPKPPRRKSRRRIFCQLMHHLTE 414 (420)
T ss_dssp -----------CCSSEECHHHHHHHH
T ss_pred cccCcccccccccchhHhHHHHHHHH
Confidence 33444544443 3 337788888764
No 43
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=23.29 E-value=34 Score=25.22 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=11.4
Q ss_pred CCCCCCCCcEEEEE
Q 030707 142 PIPDIRTGDVVEIK 155 (173)
Q Consensus 142 ~iPdiRpGdIVelk 155 (173)
-.-||+.||+||.-
T Consensus 78 ~~~dik~GD~Ie~y 91 (99)
T 1d1n_A 78 NFNDIKEGDVIEAY 91 (99)
T ss_dssp TCSSCSSCSEEEEE
T ss_pred CcCCCCCCCEEEEE
Confidence 45699999999864
No 44
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=22.96 E-value=44 Score=26.99 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=14.1
Q ss_pred hcCCCCCC-CCCcEEEEE
Q 030707 139 SERPIPDI-RTGDVVEIK 155 (173)
Q Consensus 139 ~~R~iPdi-RpGdIVelk 155 (173)
....+|.+ +.||||.|+
T Consensus 93 ~~e~LP~V~~~GDIIlL~ 110 (187)
T 1qzg_A 93 QGNDLPVIKQVGQPLLLH 110 (187)
T ss_dssp SSSCSCCCCSTTCEEEEE
T ss_pred ChhhCCCCCCCCCEEEEE
Confidence 35679999 999999874
No 45
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=22.19 E-value=56 Score=21.54 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=11.3
Q ss_pred CCCCCcEEEEEEe
Q 030707 145 DIRTGDVVEIKLV 157 (173)
Q Consensus 145 diRpGdIVelkvE 157 (173)
+|++||.|++.++
T Consensus 35 gi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 35 GIAEKDALEIYVD 47 (59)
T ss_dssp TCCTTCEEEEEEE
T ss_pred CCCCCCEEEEEEE
Confidence 7999999998875
No 46
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=21.86 E-value=39 Score=20.23 Aligned_cols=14 Identities=29% Similarity=0.499 Sum_probs=11.1
Q ss_pred CCCCCcEEEEEEee
Q 030707 145 DIRTGDVVEIKLVN 158 (173)
Q Consensus 145 diRpGdIVelkvEV 158 (173)
.|+.||+|.|--..
T Consensus 19 s~~~Gd~i~v~~~~ 32 (58)
T 1zuy_A 19 PLKKGDVIYITREE 32 (58)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 48999999986554
No 47
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=21.77 E-value=26 Score=31.75 Aligned_cols=12 Identities=67% Similarity=0.803 Sum_probs=6.9
Q ss_pred CCcccccccccc
Q 030707 1 MGSQVLPQALHW 12 (173)
Q Consensus 1 Mas~vLPQAL~~ 12 (173)
||.|+|||+|++
T Consensus 21 ~~~~~lp~~l~~ 32 (390)
T 3dkb_A 21 MAEQVLPQALYL 32 (390)
T ss_dssp --CCCCCSSGGG
T ss_pred hhhhhccHHHHH
Confidence 667777777763
No 48
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=21.61 E-value=46 Score=23.01 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=12.9
Q ss_pred CCCCCcEEEEEEeecc
Q 030707 145 DIRTGDVVEIKLVNAV 160 (173)
Q Consensus 145 diRpGdIVelkvEVPE 160 (173)
.|++||+|+|+=.|=+
T Consensus 63 ~i~~Gdvv~i~g~v~~ 78 (97)
T 3e0e_A 63 EVKKGDIAEVSGYVKQ 78 (97)
T ss_dssp CCCTTCEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE
Confidence 7999999999766533
No 49
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=21.25 E-value=85 Score=25.54 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=27.9
Q ss_pred HhhHHHHHHhhhcCCC---------CCCCCCcEEEEEEeecccceeeeeEe
Q 030707 128 ILNKRAVEASESERPI---------PDIRTGDVVEIKLVNAVFDYLYNVLC 169 (173)
Q Consensus 128 ILnkeavee~~~~R~i---------PdiRpGdIVelkvEVPEnkr~~~~~c 169 (173)
++|..|++.+..-+.+ .+|+.||+|.|.- +..+.+..|++
T Consensus 79 vVD~GAv~Al~~GaSLl~pGV~~v~g~F~~GD~V~V~~--~~G~~IAvG~a 127 (195)
T 3zv0_C 79 VVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLIT--TKGEAIAVAIA 127 (195)
T ss_dssp EECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEEC--TTCCEEEEEEE
T ss_pred EECHHHHHHHhcCCCccCCCcEecCCCcCCCCEEEEEc--CCCCEEEEEEE
Confidence 5688888887655443 8999999998854 34555555543
No 50
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=20.80 E-value=21 Score=28.02 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=16.7
Q ss_pred CCCCCCCcEEEEEEeecccc
Q 030707 143 IPDIRTGDVVEIKLVNAVFD 162 (173)
Q Consensus 143 iPdiRpGdIVelkvEVPEnk 162 (173)
.-.|+.||.|+|++...+++
T Consensus 119 ~L~LkDGD~V~I~v~~~~~~ 138 (146)
T 2oyn_A 119 QFNLKDGDVIKILIKGDKDE 138 (146)
T ss_dssp HHTCCTTCEEEEEEECCTTC
T ss_pred hcCCCCCCEEEEEEeCCCCc
Confidence 34689999999999988774
No 51
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=20.79 E-value=43 Score=23.80 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=11.2
Q ss_pred CCCCCcEEEEEEeec
Q 030707 145 DIRTGDVVEIKLVNA 159 (173)
Q Consensus 145 diRpGdIVelkvEVP 159 (173)
++++||||+|.=.=+
T Consensus 50 G~k~GdVvkI~R~S~ 64 (77)
T 1eik_A 50 GAKRGDIVKIIRKSP 64 (77)
T ss_dssp GCCTTCEEEEEEEET
T ss_pred CCCCCCEEEEEECCC
Confidence 579999999854444
No 52
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=20.27 E-value=75 Score=22.26 Aligned_cols=16 Identities=13% Similarity=0.449 Sum_probs=12.6
Q ss_pred CCCCCcEEEEEEeecc
Q 030707 145 DIRTGDVVEIKLVNAV 160 (173)
Q Consensus 145 diRpGdIVelkvEVPE 160 (173)
.+++||||.|....++
T Consensus 39 ~L~~GdVI~Ld~~~~~ 54 (96)
T 1o6a_A 39 EMIHGSIIELDKLTGE 54 (96)
T ss_dssp HCCTTCEEEEEEETTC
T ss_pred CCCCCCEEEeCCCCCC
Confidence 3799999999875554
No 53
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagel unknown function; HET: MSE; 2.60A {Campylobacter jejuni}
Probab=20.01 E-value=1.2e+02 Score=22.17 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=27.8
Q ss_pred CccchhhHHhHhhHHHHHHhhh---------cCCCCCCCCCcEEEEEEeecccc
Q 030707 118 PRVKLGDIMGILNKRAVEASES---------ERPIPDIRTGDVVEIKLVNAVFD 162 (173)
Q Consensus 118 krkk~g~IM~ILnkeavee~~~---------~R~iPdiRpGdIVelkvEVPEnk 162 (173)
....-|++|.++|-=+.-.... .+=+=+++|||.|.++.+|=..+
T Consensus 63 g~~HGg~~~alad~a~~~~~~~~~~vt~~~~i~F~~PV~~GD~L~a~a~v~~~~ 116 (152)
T 3bnv_A 63 GLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYAPLKLGDVLELEAHALFDE 116 (152)
T ss_dssp CBBCHHHHHHHHHHHHHHHHCCSSEEEEEEEEEECSCCBTTCEEEEEEEECCCS
T ss_pred CcccHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCCCCCCEEEEEEEEEEEc
Confidence 3444667777776644332211 12233678999999999997653
Done!