Query 030708
Match_columns 173
No_of_seqs 135 out of 947
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:49:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kii_A Putative uncharacterize 11.8 4.4E+02 0.015 19.0 5.9 70 30-105 2-77 (181)
2 1dmu_A BGLI restriction endonu 10.9 68 0.0023 25.4 0.6 9 161-169 65-73 (299)
3 2ggv_A NS2B, non-structural pr 9.6 71 0.0024 19.4 0.2 10 163-172 44-53 (56)
4 3mp7_B Preprotein translocase 9.5 1.5E+02 0.005 18.2 1.7 32 8-39 22-53 (61)
5 1fs1_B SKP1, cyclin A/CDK2-ass 9.3 3.1E+02 0.011 19.0 3.7 22 80-101 116-139 (141)
6 2qho_B E3 ubiquitin-protein li 9.2 2.8E+02 0.0096 16.4 2.7 20 81-100 16-35 (53)
7 2k5k_A Uncharacterized protein 8.2 1.4E+02 0.0048 19.0 1.2 10 164-173 36-45 (70)
8 1szw_A TRNA pseudouridine synt 7.6 1.4E+02 0.0049 24.9 1.3 29 120-148 205-234 (379)
9 1m93_A Serine proteinase inhib 7.5 56 0.0019 19.3 -1.0 29 66-94 14-43 (55)
10 1h2v_C 80 kDa nuclear CAP bind 6.6 7.9E+02 0.027 22.4 5.8 53 55-107 44-99 (771)
No 1
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=11.78 E-value=4.4e+02 Score=19.04 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCCCcHHHHHHHHHHhhhhhhhH------HHHHHHHHHHhcCCCChHHHHHHHHhchHH
Q 030708 30 VGPVGHFWYEGLDRFIRLKLQLPPKSARFVATKVAMDSIIFGPL------DLFVFFTYMGFSTGKNVAQVKEDLKRDFLP 103 (173)
Q Consensus 30 ~gP~~h~wy~~Ld~~~~~~~~~~~~~~~~~~~Kv~~DQ~v~~P~------~~~~F~~~~~~leg~s~~~~~~~l~~~~~~ 103 (173)
.|-+...|..+++..++. ..|..+..+.-++..++.|. -+.-.+...+-..|.+.+++.+.+-+.+..
T Consensus 2 ~G~I~~~~~~~v~~~~G~------e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s~~~g~~~~~ll~~fG~~~~~ 75 (181)
T 2kii_A 2 KGIIFNVLEDMVVAQCGM------SVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDVVKAFGQFLFN 75 (181)
T ss_dssp CCHHHHHHHHHHHHHTCH------HHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHcCH------HHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 356777888888888853 36777777877777777765 245555556667899999998888877654
Q ss_pred HH
Q 030708 104 AL 105 (173)
Q Consensus 104 ~~ 105 (173)
.+
T Consensus 76 ~~ 77 (181)
T 2kii_A 76 GL 77 (181)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>1dmu_A BGLI restriction endonuclease; protein-DNA complex, active site calcium IONS, alpha/beta structure, A:A mismatch, hydrolase/DNA complex; HET: DNA; 2.20A {Bacillus subtilis} SCOP: c.52.1.4
Probab=10.89 E-value=68 Score=25.44 Aligned_cols=9 Identities=22% Similarity=0.110 Sum_probs=6.7
Q ss_pred cccccccCC
Q 030708 161 FHSLEERGG 169 (173)
Q Consensus 161 ~~~~~~~~~ 169 (173)
-|||||||-
T Consensus 65 NYPPe~RGr 73 (299)
T 1dmu_A 65 NYPPLDRGK 73 (299)
T ss_dssp TSCCCCCSS
T ss_pred cCChhHcCc
Confidence 488888873
No 3
>2ggv_A NS2B, non-structural protein 2B; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus}
Probab=9.58 E-value=71 Score=19.44 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=1.8
Q ss_pred cccccCCCCC
Q 030708 163 SLEERGGKGG 172 (173)
Q Consensus 163 ~~~~~~~~~~ 172 (173)
|++++||.||
T Consensus 44 e~~~~~~~~~ 53 (56)
T 2ggv_A 44 PGAGGGGSGG 53 (56)
T ss_dssp TTC-------
T ss_pred CCCCCCCCCC
Confidence 5566777665
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=9.53 E-value=1.5e+02 Score=18.21 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=24.5
Q ss_pred cCCCCcccHHHHHHHhHhcccccchHHHHHHH
Q 030708 8 ADEKFKVNWKRVAVTSSFGFGFVGPVGHFWYE 39 (173)
Q Consensus 8 ~~~~~~~D~~Rt~~~~~~G~~~~gP~~h~wy~ 39 (173)
.+++..=++.++++.+..|+++.|-+.+.-+-
T Consensus 22 ~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 22 TKKPNWATYKRAAKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667889999999999988888775543
No 5
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=9.27 E-value=3.1e+02 Score=18.99 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=12.5
Q ss_pred HHHHhcCCCChHHHHHH--HHhch
Q 030708 80 TYMGFSTGKNVAQVKED--LKRDF 101 (173)
Q Consensus 80 ~~~~~leg~s~~~~~~~--l~~~~ 101 (173)
.+...++|+|.+|+.+. |+++|
T Consensus 116 ~vA~~ikgkt~eeiR~~f~I~~d~ 139 (141)
T 1fs1_B 116 TVANMIKGKTPEEIRKTFNIKNDF 139 (141)
T ss_dssp HHHHHHTTCCHHHHHHHTC-----
T ss_pred HHHHHHcCCCHHHHHHHcCCCCCC
Confidence 44556799999887764 44444
No 6
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=9.17 E-value=2.8e+02 Score=16.38 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=15.8
Q ss_pred HHHhcCCCChHHHHHHHHhc
Q 030708 81 YMGFSTGKNVAQVKEDLKRD 100 (173)
Q Consensus 81 ~~~~leg~s~~~~~~~l~~~ 100 (173)
+..+|+|+|.+-|..++++.
T Consensus 16 ~q~VLqgksR~vIirELqrT 35 (53)
T 2qho_B 16 AQVVLQGKSRSVIIRELQRT 35 (53)
T ss_dssp HHHHSTTCCHHHHHHHHHHT
T ss_pred HHHHhcCCcHHHHHHHHHHh
Confidence 34679999988888888764
No 7
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=8.17 E-value=1.4e+02 Score=18.98 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=8.2
Q ss_pred ccccCCCCCC
Q 030708 164 LEERGGKGGL 173 (173)
Q Consensus 164 ~~~~~~~~~~ 173 (173)
|.|.||.+|+
T Consensus 36 p~E~GG~~G~ 45 (70)
T 2k5k_A 36 PKEIGGRNGP 45 (70)
T ss_dssp CCCSCCCCCC
T ss_pred CcccCCCCCC
Confidence 6888998885
No 8
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=7.60 E-value=1.4e+02 Score=24.90 Aligned_cols=29 Identities=3% Similarity=-0.125 Sum_probs=19.7
Q ss_pred heeecCccchhhhhH-hHHHHHHHHHHhhc
Q 030708 120 FRYVPVRYQLLYVNI-FCLLDSAFLSWVEQ 148 (173)
Q Consensus 120 F~~vP~~~Rvlf~n~-v~~~Wn~~LS~~~~ 148 (173)
+.-+|...|.+|++. -|.+||-+||.--.
T Consensus 205 ~~~ipr~lr~~yv~AyQS~lfN~~lS~Ri~ 234 (379)
T 1szw_A 205 TPVRDRNKRSFWLSAARSALFNQIVAERLK 234 (379)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999888876 58999999996543
No 9
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=7.46 E-value=56 Score=19.33 Aligned_cols=29 Identities=14% Similarity=0.406 Sum_probs=17.2
Q ss_pred hhhhhhhHHHHHHHHHHHh-cCCCChHHHH
Q 030708 66 DSIIFGPLDLFVFFTYMGF-STGKNVAQVK 94 (173)
Q Consensus 66 DQ~v~~P~~~~~F~~~~~~-leg~s~~~~~ 94 (173)
+.++++|+.+..-+.+... .+|.+.+|+.
T Consensus 14 ~Ni~~SP~Si~~aLaml~~GA~g~T~~ql~ 43 (55)
T 1m93_A 14 ENVFISPPSISSVLTILYYGANGSTAEQLS 43 (55)
T ss_dssp SCEEECHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHhhccchHHHHHH
Confidence 3678999977665554443 3455544443
No 10
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=6.55 E-value=7.9e+02 Score=22.39 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcCCCChH---HHHHHHHhchHHHHHh
Q 030708 55 SARFVATKVAMDSIIFGPLDLFVFFTYMGFSTGKNVA---QVKEDLKRDFLPALVL 107 (173)
Q Consensus 55 ~~~~~~~Kv~~DQ~v~~P~~~~~F~~~~~~leg~s~~---~~~~~l~~~~~~~~~~ 107 (173)
..+..+.+.+++...-.|..+++|=+..++++-+..+ ++.+++..++-..+..
T Consensus 44 ~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv~~l~~~f~~~l~~ 99 (771)
T 1h2v_C 44 NYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKA 99 (771)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHc
Confidence 3567888899999999999999998899999877643 4555555555554443
Done!