Query 030708
Match_columns 173
No_of_seqs 135 out of 947
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 04:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030708.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030708hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc1 a.118.1.14 (C:29-290) 19.7 1E+02 0.0073 22.2 5.8 71 55-125 35-114 (262)
2 d3ct6a1 c.54.1.2 (A:1-123) PTS 11.8 92 0.0067 20.0 3.3 32 69-100 88-119 (123)
3 d1dmua_ c.52.1.4 (A:) Restrict 11.2 31 0.0023 25.4 0.6 9 161-169 65-73 (299)
4 d1zfoa_ g.39.1.4 (A:) LASP-1 { 10.2 36 0.0026 16.7 0.4 8 160-167 11-18 (30)
5 d1xrda1 f.3.1.1 (A:1-52) Light 9.8 1.3E+02 0.0098 16.4 3.0 26 13-38 7-32 (52)
6 d1xmea1 f.24.1.1 (A:14-562) Ba 9.3 4.2E+02 0.03 21.0 8.0 28 129-156 463-490 (549)
7 d1wfza_ d.224.1.2 (A:) Iron-su 8.9 1.9E+02 0.014 18.5 4.1 70 71-160 59-128 (130)
8 d1rzhh2 f.23.10.1 (H:11-35) Ph 8.0 35 0.0025 16.1 -0.2 15 107-121 6-20 (26)
9 d1ee8a1 a.156.1.2 (A:122-210) 7.1 63 0.0046 19.5 0.7 17 59-75 24-40 (89)
10 d1r2za1 a.156.1.2 (A:135-228) 7.1 58 0.0042 19.9 0.6 17 59-75 24-40 (94)
No 1
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.74 E-value=1e+02 Score=22.21 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcCCCChH---HHHHHHHhchHHHHHh-ccc-----cchHHHhhhheeecC
Q 030708 55 SARFVATKVAMDSIIFGPLDLFVFFTYMGFSTGKNVA---QVKEDLKRDFLPALVL-EGG-----IWPIVQVANFRYVPV 125 (173)
Q Consensus 55 ~~~~~~~Kv~~DQ~v~~P~~~~~F~~~~~~leg~s~~---~~~~~l~~~~~~~~~~-~~~-----vWp~~q~iNF~~vP~ 125 (173)
+.++.+.+.+++.....|..++.|-+..++++-+..+ ++.+++.+++-..+.. +|. +-=.++++|+..++.
T Consensus 35 ~~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 35 NYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 3567888999999999999888888888888766532 4555555565555543 221 334566666666554
No 2
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=11.76 E-value=92 Score=19.95 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHhcCCCChHHHHHHHHhc
Q 030708 69 IFGPLDLFVFFTYMGFSTGKNVAQVKEDLKRD 100 (173)
Q Consensus 69 v~~P~~~~~F~~~~~~leg~s~~~~~~~l~~~ 100 (173)
+-+|+.-..+-.......|.+++++.+++++-
T Consensus 88 i~~p~tegal~Aa~~a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 88 FNVPLIEGAYTASALLEAGATFEAIKEQLEKM 119 (123)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCHHHHHHHHGGG
T ss_pred EcCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 55777778888888889999999999998763
No 3
>d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus subtilis [TaxId: 1423]}
Probab=11.16 E-value=31 Score=25.44 Aligned_cols=9 Identities=22% Similarity=0.110 Sum_probs=6.6
Q ss_pred cccccccCC
Q 030708 161 FHSLEERGG 169 (173)
Q Consensus 161 ~~~~~~~~~ 169 (173)
-|||||||-
T Consensus 65 NYPPe~RGr 73 (299)
T d1dmua_ 65 NYPPLDRGK 73 (299)
T ss_dssp TSCCCCCSS
T ss_pred cCChhHcCc
Confidence 478888873
No 4
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.20 E-value=36 Score=16.72 Aligned_cols=8 Identities=13% Similarity=-0.080 Sum_probs=5.8
Q ss_pred cccccccc
Q 030708 160 SFHSLEER 167 (173)
Q Consensus 160 ~~~~~~~~ 167 (173)
.+||+|+-
T Consensus 11 ~VYp~Ekl 18 (30)
T d1zfoa_ 11 IVYPTEKV 18 (30)
T ss_dssp BCCGGGCC
T ss_pred ccccHHHh
Confidence 47888874
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.83 E-value=1.3e+02 Score=16.45 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=18.8
Q ss_pred cccHHHHHHHhHhcccccchHHHHHH
Q 030708 13 KVNWKRVAVTSSFGFGFVGPVGHFWY 38 (173)
Q Consensus 13 ~~D~~Rt~~~~~~G~~~~gP~~h~wy 38 (173)
-+|.+|++.-.....+..+-..|+-.
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiL 32 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFIL 32 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999988766666666677777653
No 6
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=9.28 E-value=4.2e+02 Score=20.99 Aligned_cols=28 Identities=11% Similarity=0.310 Sum_probs=21.9
Q ss_pred hhhhhHhHHHHHHHHHHhhcccchhhhh
Q 030708 129 LLYVNIFCLLDSAFLSWVEQQKDAAWKQ 156 (173)
Q Consensus 129 vlf~n~v~~~Wn~~LS~~~~~~~~~~~~ 156 (173)
++....+-+++|.+.|..+.++++.+.+
T Consensus 463 i~~~g~l~f~~nl~~s~~~~~~~~~~~~ 490 (549)
T d1xmea1 463 VLLVALLLFIYGLFSVLLSRERKPELAE 490 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 5677888899999999998886555443
No 7
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=8.89 E-value=1.9e+02 Score=18.54 Aligned_cols=70 Identities=13% Similarity=-0.029 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHhcCCCChHHHHHHHHhchHHHHHhccccchHHHhhhheeecCccchhhhhHhHHHHHHHHHHhhccc
Q 030708 71 GPLDLFVFFTYMGFSTGKNVAQVKEDLKRDFLPALVLEGGIWPIVQVANFRYVPVRYQLLYVNIFCLLDSAFLSWVEQQK 150 (173)
Q Consensus 71 ~P~~~~~F~~~~~~leg~s~~~~~~~l~~~~~~~~~~~~~vWp~~q~iNF~~vP~~~Rvlf~n~v~~~Wn~~LS~~~~~~ 150 (173)
..+.+++--+++.++.|++++|+.+--.++. .+.+. +|+. =+.|..+.|.++-..++.-.
T Consensus 59 C~is~AsaS~~tel~~Gkt~~ea~~i~~~~i-------------~~~l~---l~p~----R~~CA~La~~aL~~Al~~y~ 118 (130)
T d1wfza_ 59 CGSAIASSSLATEWVKGKTVEEALTIKNTDI-------------AKELC---LPPV----KLHCSMLAEDAIKAALADYK 118 (130)
T ss_dssp CHHHHHHHHHHHHHHTTSBHHHHHHCCHHHH-------------HHHHT---CCGG----GHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhccCHHHHHhcCcHHH-------------HHHcC---CCcc----hhhHHHHHHHHHHHHHHHHH
Confidence 4455566666777899999988775322222 23332 3432 35788899999888777665
Q ss_pred chhhhhhhcc
Q 030708 151 DAAWKQWFTS 160 (173)
Q Consensus 151 ~~~~~~~~~~ 160 (173)
...+.+..|+
T Consensus 119 ~k~~~~~~p~ 128 (130)
T d1wfza_ 119 LKQESKSGPS 128 (130)
T ss_dssp HHHHCSSCSC
T ss_pred HhccCccCCC
Confidence 5555555544
No 8
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.96 E-value=35 Score=16.07 Aligned_cols=15 Identities=7% Similarity=0.084 Sum_probs=10.1
Q ss_pred hccccchHHHhhhhe
Q 030708 107 LEGGIWPIVQVANFR 121 (173)
Q Consensus 107 ~~~~vWp~~q~iNF~ 121 (173)
+-|.+|.+...+.|+
T Consensus 6 aiw~fw~ffalli~y 20 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYY 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457778777766654
No 9
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=7.11 E-value=63 Score=19.49 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhhhHHH
Q 030708 59 VATKVAMDSIIFGPLDL 75 (173)
Q Consensus 59 ~~~Kv~~DQ~v~~P~~~ 75 (173)
.++.+++||-+++-+.+
T Consensus 24 ~ik~~LlDQ~~iaGiGN 40 (89)
T d1ee8a1 24 PLKALLLDQRLAAGVGN 40 (89)
T ss_dssp BHHHHHHHSSSSTTCCH
T ss_pred cHHHHHHhccccCCCCc
Confidence 47889999999988854
No 10
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.10 E-value=58 Score=19.92 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=14.2
Q ss_pred HHHHHHHhhhhhhhHHH
Q 030708 59 VATKVAMDSIIFGPLDL 75 (173)
Q Consensus 59 ~~~Kv~~DQ~v~~P~~~ 75 (173)
.++.+++||.+++-+.+
T Consensus 24 ~ik~~LlDQ~~~aGiGN 40 (94)
T d1r2za1 24 SVKALLLDQTVVAGFGN 40 (94)
T ss_dssp BHHHHHHCTTTSSSCCH
T ss_pred cHHHHHHhccccCCccc
Confidence 47889999999998844
Done!