BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030710
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 206 bits (525), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 120/164 (73%), Gaps = 1/164 (0%)
Query: 11 LQEPGVAEEDFAQIDTARLIKKFLGGRSPKPPCVPKEIGFRGLPDL-RTLPSWLSEEDVN 69
Q PG E +FA I ++KK L R P P PK G +PD L SWLSEE+++
Sbjct: 165 FQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELD 224
Query: 70 YYASKFSQKGFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYI 129
YYA+KF Q GFTG +NYYR L +NWEL APWTGAQ+K+P KF+VG+ D+ YHIPG +EYI
Sbjct: 225 YYANKFEQTGFTGAVNYYRALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYI 284
Query: 130 QNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173
NGGFKKDVP L+EV+V+EG AHF++QE+ E+S HIYDFI++F
Sbjct: 285 HNGGFKKDVPLLEEVVVLEGAAHFVSQERPHEISKHIYDFIQKF 328
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 206 bits (525), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 120/164 (73%), Gaps = 1/164 (0%)
Query: 11 LQEPGVAEEDFAQIDTARLIKKFLGGRSPKPPCVPKEIGFRGLPDL-RTLPSWLSEEDVN 69
Q PG E +FA I ++KK L R P P PK G +PD L SWLSEE+++
Sbjct: 165 FQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELD 224
Query: 70 YYASKFSQKGFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYI 129
YYA+KF Q GFTG +NYYR L +NWEL APWTGAQ+K+P KF+VG+ D+ YHIPG +EYI
Sbjct: 225 YYANKFEQTGFTGAVNYYRALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYI 284
Query: 130 QNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173
NGGFKKDVP L+EV+V+EG AHF++QE+ E+S HIYDFI++F
Sbjct: 285 HNGGFKKDVPLLEEVVVLEGAAHFVSQERPHEISKHIYDFIQKF 328
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 11 LQEPGVAEEDFAQIDTARLIKKFLGGRSPKPPCVPKEIGFRGL----PDLRTLPSWLSEE 66
QEPGVAE + Q + +R K + K GL P+ +L ++EE
Sbjct: 168 FQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEE 226
Query: 67 DVNYYASKFSQKGFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIR 126
++ +Y +F + GF G LN+YR ++ NW+ G +I IP + + D +P +
Sbjct: 227 EIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMS 285
Query: 127 EYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVS 163
+++++ +P L+ + E H+ +K EV+
Sbjct: 286 QHMEDW-----IPHLKRGHI-EDCGHWTQMDKPTEVN 316
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 11 LQEPGVAEEDFAQIDTARLIKKFLGGRSPKPPCVPKEIGFRGL----PDLRTLPSWLSEE 66
QEPGVAE + Q + +R K + K GL P+ +L ++EE
Sbjct: 183 FQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEE 241
Query: 67 DVNYYASKFSQKGFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIR 126
++ +Y +F + GF G LN+YR ++ NW+ G +I IP + + D +P +
Sbjct: 242 EIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMS 300
Query: 127 EYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVS 163
+++++ +P L+ + E H+ +K EV+
Sbjct: 301 QHMEDW-----IPHLKRGHI-EDCGHWTQMDKPTEVN 331
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 11 LQEPGVAEEDFAQIDTARLIKKFLGGRSPKPPCVPKEIGFRGL----PDLRTLPSWLSEE 66
QEPGVAE + Q + +R K + K GL P+ +L ++EE
Sbjct: 387 FQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEE 445
Query: 67 DVNYYASKFSQKGFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIR 126
++ +Y +F + GF G LN+YR ++ NW+ G +I IP + + D +P +
Sbjct: 446 EIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMS 504
Query: 127 EYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFI 170
+++++ +P L+ + E H+ +K EV+ + ++
Sbjct: 505 QHMEDW-----IPHLKRGHI-EDCGHWTQMDKPTEVNQILIKWL 542
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 58 TLPSWLSEEDVNYYASKFSQKGFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLD 117
T+P+W +E D+++Y +F + GF G L++Y +D +W LA G + P F+ G D
Sbjct: 249 TMPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYD 308
Query: 118 ITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFI 170
+ I G + + + +P + ++ V H+I QE +E + + DF+
Sbjct: 309 VGT-IWGAQAIERA---HEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDFL 357
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 58 TLPSWLSEEDVNYYASKFSQKGFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLD 117
T+P+W +E D+++Y +F + GF G L++Y +D +W LA G + P F+ G D
Sbjct: 243 TMPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYD 302
Query: 118 ITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFI 170
+ I G + + + +P + ++ V H+I QE +E + + DF+
Sbjct: 303 VGT-IWGAQAIERA---HEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDFL 351
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 11 LQEPGVAEEDFAQIDTARLIKKFLGGRSPKPPCV---PKEIG--FRGLPDLRTLPSWLSE 65
QEPGVAE + + + +R K F EIG P+ L +E
Sbjct: 385 FQEPGVAEAELEK-NMSRTFKSFFRASDETGFIAVHKATEIGGILVNTPEDPNLSKITTE 443
Query: 66 EDVNYYASKFSQKGFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGI 125
E++ +Y +F + GF G LN+YR + NW+ G +I +P + + DI
Sbjct: 444 EEIEFYIQQFKKTGFRGPLNWYRNTERNWKWSCKGLGRKILVPALMVTAEKDIVLR---- 499
Query: 126 REYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171
E +N +K +P L+ + E H+ EK EV+ + +++
Sbjct: 500 PEMSKN--MEKWIPFLKRGHI-EDCGHWTQIEKPTEVNQILIKWLQ 542
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 15 GVAEEDFAQIDTARLIKKFLGGRSPKPPCVPKEIGFRGLPDLRTLPSWLSEEDVNYYASK 74
G ED A +L + G+ K V +G L D+ + + +E + ++
Sbjct: 366 GKTREDHAATXN-QLFAAYAQGKQAKELAVV--LGESALSDIDKIYAKFAER----FENE 418
Query: 75 FSQKGFTGGLNYYRCLDLNWELLAPWTGAQIK 106
+ +GF LDL WELLA ++K
Sbjct: 419 YVNQGFYTNRTITETLDLGWELLAXLPRTELK 450
>pdb|1XI7|A Chain A, Nmr Structure Of The Carboxyl-Terminal Cysteine Domain
Of The Vhv1.1 Polydnaviral Gene Product
pdb|1XJ1|A Chain A, 3d Solution Structure Of The C-Terminal Cysteine-Rich
Domain Of The Vhv1.1 Polydnaviral Gene Product
Length = 61
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 27 ARLIKKFLGGRSPKPPCVPKEIGFRGLPD 55
++ ++KF+ R + CVP + G RGLP+
Sbjct: 31 SKNVRKFICDRDGEGVCVPFDGGVRGLPN 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,761,000
Number of Sequences: 62578
Number of extensions: 258021
Number of successful extensions: 496
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 19
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)