Query 030710
Match_columns 173
No_of_seqs 221 out of 2379
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4178 Soluble epoxide hydrol 99.9 1.1E-24 2.5E-29 164.3 9.9 156 4-173 165-320 (322)
2 PRK03592 haloalkane dehalogena 99.5 5E-14 1.1E-18 107.8 6.0 105 62-172 175-288 (295)
3 PLN02679 hydrolase, alpha/beta 99.4 9.6E-13 2.1E-17 103.7 9.3 68 102-172 288-356 (360)
4 PLN02965 Probable pheophorbida 99.4 7.3E-13 1.6E-17 99.4 4.8 63 103-172 190-252 (255)
5 PLN02824 hydrolase, alpha/beta 99.3 9.1E-13 2E-17 100.8 4.9 65 102-173 230-294 (294)
6 PRK03204 haloalkane dehalogena 99.3 1.6E-12 3.5E-17 99.3 4.4 60 105-170 226-285 (286)
7 TIGR03343 biphenyl_bphD 2-hydr 99.3 3.4E-12 7.5E-17 96.7 5.2 64 102-172 219-282 (282)
8 PRK10349 carboxylesterase BioH 99.3 2.7E-12 5.9E-17 96.2 4.4 64 102-172 192-255 (256)
9 KOG1454 Predicted hydrolase/ac 99.3 5.2E-12 1.1E-16 98.2 5.1 64 103-173 260-324 (326)
10 PLN03084 alpha/beta hydrolase 99.2 1.7E-11 3.7E-16 97.2 7.1 103 62-172 274-383 (383)
11 KOG2984 Predicted hydrolase [G 99.2 3.3E-12 7.2E-17 90.9 2.2 160 1-172 111-275 (277)
12 PRK00870 haloalkane dehalogena 99.2 1.3E-11 2.7E-16 94.9 5.1 64 102-173 235-301 (302)
13 TIGR01738 bioH putative pimelo 99.2 1.2E-11 2.5E-16 90.8 4.5 61 103-170 185-245 (245)
14 PRK10673 acyl-CoA esterase; Pr 99.2 2.2E-11 4.8E-16 90.9 5.1 65 102-173 191-255 (255)
15 TIGR02240 PHA_depoly_arom poly 99.2 2.4E-11 5.3E-16 92.1 5.0 63 102-172 203-265 (276)
16 PRK07581 hypothetical protein; 99.2 2.6E-11 5.6E-16 94.7 4.1 65 102-173 271-336 (339)
17 PLN02578 hydrolase 99.1 6.3E-11 1.4E-15 93.2 4.9 62 102-171 292-353 (354)
18 PRK08775 homoserine O-acetyltr 99.1 4.4E-11 9.4E-16 93.7 3.6 64 102-172 273-338 (343)
19 PLN03087 BODYGUARD 1 domain co 99.1 8.6E-11 1.9E-15 95.4 4.8 62 104-172 416-478 (481)
20 TIGR03056 bchO_mg_che_rel puta 99.1 1.1E-10 2.4E-15 87.8 4.8 63 102-171 216-278 (278)
21 PRK06489 hypothetical protein; 99.1 1.3E-10 2.9E-15 91.5 5.3 66 102-173 288-357 (360)
22 KOG2382 Predicted alpha/beta h 99.1 1.1E-10 2.4E-15 88.8 4.0 64 103-173 250-313 (315)
23 TIGR03611 RutD pyrimidine util 99.1 1.7E-10 3.6E-15 85.5 4.6 64 102-172 194-257 (257)
24 PLN02385 hydrolase; alpha/beta 99.0 1.9E-10 4E-15 90.3 4.4 65 102-173 275-345 (349)
25 PRK11126 2-succinyl-6-hydroxy- 99.0 3.5E-10 7.7E-15 83.8 5.6 58 102-172 184-241 (242)
26 TIGR01392 homoserO_Ac_trn homo 99.0 8.3E-11 1.8E-15 92.4 2.2 63 102-171 284-351 (351)
27 PRK00175 metX homoserine O-ace 99.0 1.8E-10 3.8E-15 91.5 3.3 65 102-172 305-373 (379)
28 TIGR02427 protocat_pcaD 3-oxoa 99.0 7.6E-10 1.6E-14 81.2 4.8 62 103-171 190-251 (251)
29 TIGR01250 pro_imino_pep_2 prol 99.0 7.1E-10 1.5E-14 83.2 4.3 61 103-171 228-288 (288)
30 TIGR03695 menH_SHCHC 2-succiny 98.9 1.1E-09 2.4E-14 80.1 4.9 61 103-171 191-251 (251)
31 PLN02894 hydrolase, alpha/beta 98.9 1.1E-09 2.4E-14 87.6 5.1 64 102-173 321-385 (402)
32 PHA02857 monoglyceride lipase; 98.9 2.2E-09 4.7E-14 81.3 4.8 65 102-173 205-273 (276)
33 PLN02511 hydrolase 98.9 3.6E-09 7.9E-14 84.3 5.7 65 102-172 294-364 (388)
34 PRK06765 homoserine O-acetyltr 98.9 1.9E-09 4.2E-14 85.8 4.0 65 102-173 319-388 (389)
35 PRK14875 acetoin dehydrogenase 98.8 5.5E-09 1.2E-13 82.2 6.0 61 103-173 311-371 (371)
36 PF12697 Abhydrolase_6: Alpha/ 98.8 3.7E-09 8E-14 76.2 2.9 56 103-165 173-228 (228)
37 PRK10749 lysophospholipase L2; 98.8 6.6E-09 1.4E-13 81.0 3.9 65 102-173 255-329 (330)
38 PF00561 Abhydrolase_1: alpha/ 98.7 8.5E-09 1.8E-13 75.2 3.6 58 103-167 172-229 (230)
39 PLN02980 2-oxoglutarate decarb 98.7 1.2E-08 2.6E-13 93.7 4.6 63 102-172 1564-1638(1655)
40 PRK05855 short chain dehydroge 98.7 2.5E-08 5.4E-13 82.8 5.9 62 103-172 230-291 (582)
41 PLN02298 hydrolase, alpha/beta 98.7 1E-08 2.2E-13 79.8 3.3 65 102-173 247-317 (330)
42 PLN02211 methyl indole-3-aceta 98.7 2.8E-08 6.1E-13 75.6 4.8 58 106-171 211-268 (273)
43 KOG4409 Predicted hydrolase/ac 98.6 2.9E-08 6.2E-13 76.4 3.3 60 106-172 303-363 (365)
44 PLN02652 hydrolase; alpha/beta 98.6 4.6E-08 1E-12 78.1 4.5 65 102-173 320-387 (395)
45 PRK10985 putative hydrolase; P 98.5 2E-07 4.3E-12 72.5 5.7 89 70-171 223-318 (324)
46 PRK05077 frsA fermentation/res 98.4 3.6E-07 7.7E-12 73.5 4.6 61 103-173 352-412 (414)
47 TIGR03100 hydr1_PEP hydrolase, 98.3 5.1E-07 1.1E-11 68.7 2.8 66 104-172 205-274 (274)
48 COG0596 MhpC Predicted hydrola 98.3 1.5E-06 3.3E-11 63.2 5.2 63 102-171 217-280 (282)
49 TIGR01249 pro_imino_pep_1 prol 98.2 9.7E-07 2.1E-11 68.1 3.9 60 103-172 244-304 (306)
50 PLN02872 triacylglycerol lipas 98.1 2.8E-06 6E-11 67.9 4.4 63 103-172 320-388 (395)
51 PF00326 Peptidase_S9: Prolyl 98.1 3.3E-06 7.1E-11 61.6 4.3 66 105-173 143-209 (213)
52 PF08386 Abhydrolase_4: TAP-li 98.1 3.3E-06 7.2E-11 54.8 3.8 61 105-172 33-93 (103)
53 COG1647 Esterase/lipase [Gener 98.1 5.7E-06 1.2E-10 60.1 4.5 66 102-172 177-243 (243)
54 TIGR01607 PST-A Plasmodium sub 98.1 6.3E-06 1.4E-10 64.5 5.1 59 106-171 270-331 (332)
55 TIGR01838 PHA_synth_I poly(R)- 97.9 5.6E-06 1.2E-10 68.4 2.7 53 101-160 410-462 (532)
56 PRK07868 acyl-CoA synthetase; 97.9 1.2E-05 2.6E-10 71.4 3.8 65 102-173 293-361 (994)
57 COG0429 Predicted hydrolase of 97.7 0.00011 2.3E-09 56.7 6.1 81 79-172 253-339 (345)
58 COG3208 GrsT Predicted thioest 97.7 3.8E-05 8.3E-10 56.7 3.2 62 103-171 173-234 (244)
59 COG1506 DAP2 Dipeptidyl aminop 97.7 7.6E-05 1.6E-09 63.2 5.3 68 103-173 548-616 (620)
60 TIGR01836 PHA_synth_III_C poly 97.5 8.2E-05 1.8E-09 58.5 3.7 65 102-173 282-350 (350)
61 COG2267 PldB Lysophospholipase 97.5 0.00048 1E-08 53.2 7.1 67 102-173 224-294 (298)
62 PRK11460 putative hydrolase; P 97.5 0.00018 3.9E-09 53.4 4.5 65 104-171 146-210 (232)
63 PRK10566 esterase; Provisional 97.4 0.00016 3.4E-09 53.8 3.0 59 104-173 183-248 (249)
64 KOG2551 Phospholipase/carboxyh 97.3 0.00041 8.8E-09 50.6 4.2 59 103-171 160-218 (230)
65 PF03096 Ndr: Ndr family; Int 97.3 0.00073 1.6E-08 51.4 5.7 98 66-172 180-278 (283)
66 KOG2931 Differentiation-relate 97.1 0.004 8.8E-08 47.4 7.9 102 64-172 201-305 (326)
67 PF08840 BAAT_C: BAAT / Acyl-C 97.0 0.00054 1.2E-08 50.3 2.4 51 102-154 111-163 (213)
68 PTZ00472 serine carboxypeptida 97.0 0.0011 2.4E-08 54.3 4.4 66 106-172 364-458 (462)
69 PF01738 DLH: Dienelactone hyd 96.9 0.00089 1.9E-08 49.0 3.5 68 103-173 142-217 (218)
70 PF02230 Abhydrolase_2: Phosph 96.9 0.0012 2.6E-08 48.3 4.1 60 106-172 155-214 (216)
71 PF12695 Abhydrolase_5: Alpha/ 96.9 0.00037 8.1E-09 47.1 1.1 44 103-153 101-145 (145)
72 PRK11071 esterase YqiA; Provis 96.9 0.001 2.2E-08 48.0 3.3 56 104-171 134-189 (190)
73 KOG1455 Lysophospholipase [Lip 96.8 0.0015 3.2E-08 50.0 3.7 66 102-173 242-312 (313)
74 KOG1552 Predicted alpha/beta h 96.8 0.0017 3.8E-08 48.5 4.0 63 102-171 188-250 (258)
75 KOG2565 Predicted hydrolases o 96.8 0.0016 3.5E-08 51.1 3.7 85 80-172 378-462 (469)
76 KOG2564 Predicted acetyltransf 96.7 0.0026 5.5E-08 48.3 4.4 60 104-173 268-327 (343)
77 PF00450 Peptidase_S10: Serine 96.7 0.003 6.5E-08 50.6 4.8 64 107-171 331-414 (415)
78 PRK13604 luxD acyl transferase 96.5 0.002 4.4E-08 49.7 2.4 47 103-156 199-247 (307)
79 PF03959 FSH1: Serine hydrolas 96.4 0.00065 1.4E-08 49.8 -0.4 51 102-160 157-208 (212)
80 PF05448 AXE1: Acetyl xylan es 96.3 0.0058 1.3E-07 47.7 4.0 61 103-173 259-320 (320)
81 KOG1838 Alpha/beta hydrolase [ 96.1 0.017 3.7E-07 46.2 6.1 80 67-158 287-368 (409)
82 KOG4667 Predicted esterase [Li 96.0 0.0048 1E-07 45.2 2.3 45 104-155 197-241 (269)
83 COG2945 Predicted hydrolase of 95.8 0.013 2.9E-07 42.0 3.6 60 103-171 146-205 (210)
84 KOG4391 Predicted alpha/beta h 95.6 0.01 2.2E-07 43.6 2.6 63 103-172 218-281 (300)
85 COG0400 Predicted esterase [Ge 95.5 0.018 3.9E-07 42.1 3.6 59 104-166 144-202 (207)
86 TIGR01849 PHB_depoly_PhaZ poly 95.3 0.01 2.2E-07 47.7 2.0 66 102-173 333-406 (406)
87 PLN02442 S-formylglutathione h 94.9 0.07 1.5E-06 40.8 5.5 49 104-155 215-264 (283)
88 KOG3043 Predicted hydrolase re 94.9 0.036 7.9E-07 40.8 3.6 68 102-172 160-239 (242)
89 COG2021 MET2 Homoserine acetyl 94.9 0.039 8.5E-07 43.5 4.0 64 102-172 302-367 (368)
90 PF05705 DUF829: Eukaryotic pr 94.9 0.034 7.3E-07 41.4 3.6 65 103-170 175-240 (240)
91 PLN02213 sinapoylglucose-malat 94.8 0.054 1.2E-06 42.3 4.7 65 106-172 233-316 (319)
92 PF10142 PhoPQ_related: PhoPQ- 94.8 0.069 1.5E-06 42.4 5.3 59 104-171 260-318 (367)
93 PRK05371 x-prolyl-dipeptidyl a 94.8 0.072 1.6E-06 46.5 5.8 67 103-173 452-519 (767)
94 COG1073 Hydrolases of the alph 94.8 0.062 1.3E-06 40.3 4.8 63 104-172 229-296 (299)
95 COG0412 Dienelactone hydrolase 94.6 0.16 3.5E-06 37.9 6.6 68 102-172 154-232 (236)
96 PLN02209 serine carboxypeptida 94.6 0.11 2.3E-06 42.5 5.9 65 106-172 351-434 (437)
97 PF09752 DUF2048: Uncharacteri 94.5 0.062 1.3E-06 42.2 4.2 58 107-172 290-348 (348)
98 PF06821 Ser_hydrolase: Serine 94.4 0.013 2.9E-07 41.5 0.4 48 103-158 111-158 (171)
99 KOG3253 Predicted alpha/beta h 94.3 0.055 1.2E-06 45.3 3.8 63 104-172 302-373 (784)
100 PF08538 DUF1749: Protein of u 94.3 0.022 4.7E-07 43.9 1.5 69 102-171 228-303 (303)
101 PLN03016 sinapoylglucose-malat 94.0 0.16 3.4E-06 41.4 5.8 65 106-172 347-430 (433)
102 KOG1282 Serine carboxypeptidas 92.8 0.23 4.9E-06 40.7 4.9 65 107-172 364-447 (454)
103 PF06850 PHB_depo_C: PHB de-po 91.9 0.17 3.6E-06 36.6 2.8 65 106-173 134-202 (202)
104 TIGR01839 PHA_synth_II poly(R) 91.9 0.12 2.7E-06 43.2 2.4 47 101-154 436-482 (560)
105 COG3243 PhaC Poly(3-hydroxyalk 91.6 0.13 2.7E-06 41.4 2.1 49 101-156 325-373 (445)
106 PRK10162 acetyl esterase; Prov 91.5 0.39 8.5E-06 37.4 4.8 61 107-172 249-314 (318)
107 TIGR02821 fghA_ester_D S-formy 91.5 0.61 1.3E-05 35.4 5.8 48 105-155 210-258 (275)
108 PF00975 Thioesterase: Thioest 90.8 0.55 1.2E-05 34.2 4.8 61 106-170 168-229 (229)
109 PRK10115 protease 2; Provision 90.3 0.67 1.4E-05 40.1 5.4 49 104-155 603-655 (686)
110 COG3571 Predicted hydrolase of 89.8 0.83 1.8E-05 32.2 4.5 63 102-172 138-210 (213)
111 KOG1551 Uncharacterized conser 89.2 0.88 1.9E-05 34.7 4.6 56 109-172 309-365 (371)
112 COG3458 Acetyl esterase (deace 89.0 0.82 1.8E-05 35.0 4.3 60 103-171 256-315 (321)
113 PF03583 LIP: Secretory lipase 88.0 0.52 1.1E-05 36.3 2.9 49 104-155 217-266 (290)
114 smart00824 PKS_TE Thioesterase 86.2 2.6 5.5E-05 29.7 5.6 59 103-169 150-211 (212)
115 PF06500 DUF1100: Alpha/beta h 86.0 0.94 2E-05 36.6 3.4 61 102-172 348-408 (411)
116 COG4287 PqaA PhoPQ-activated p 85.9 1.9 4E-05 34.5 4.9 61 103-172 326-386 (507)
117 COG3545 Predicted esterase of 85.9 0.52 1.1E-05 33.5 1.7 47 103-157 114-160 (181)
118 PLN00021 chlorophyllase 83.9 2.5 5.5E-05 33.0 4.9 51 104-159 187-246 (313)
119 COG4757 Predicted alpha/beta h 82.2 1.2 2.7E-05 33.3 2.4 61 104-170 214-280 (281)
120 PF02273 Acyl_transf_2: Acyl t 82.1 1.3 2.9E-05 33.4 2.6 49 103-156 192-240 (294)
121 PF07519 Tannase: Tannase and 82.1 2.1 4.4E-05 35.5 4.0 63 108-172 355-426 (474)
122 PF05728 UPF0227: Uncharacteri 82.0 3.3 7.1E-05 29.8 4.5 54 105-170 133-186 (187)
123 COG4188 Predicted dienelactone 80.8 1.5 3.3E-05 34.8 2.6 56 102-162 247-303 (365)
124 PF07859 Abhydrolase_3: alpha/ 76.8 1.2 2.6E-05 32.0 0.9 45 106-155 166-210 (211)
125 PF05576 Peptidase_S37: PS-10 76.6 7.4 0.00016 31.6 5.3 54 108-170 353-411 (448)
126 PF11339 DUF3141: Protein of u 73.9 6.9 0.00015 32.8 4.6 59 60-125 257-316 (581)
127 PF06057 VirJ: Bacterial virul 71.5 14 0.00031 26.7 5.3 52 106-171 139-190 (192)
128 KOG2624 Triglyceride lipase-ch 70.5 20 0.00043 29.2 6.5 64 102-172 328-397 (403)
129 PF03403 PAF-AH_p_II: Platelet 64.8 6.8 0.00015 31.5 2.9 51 103-159 271-321 (379)
130 COG0657 Aes Esterase/lipase [L 62.2 15 0.00032 28.3 4.2 48 106-158 245-292 (312)
131 KOG1515 Arylacetamide deacetyl 60.5 9.6 0.00021 30.1 2.9 60 108-172 270-334 (336)
132 PF06028 DUF915: Alpha/beta hy 59.3 11 0.00023 28.6 2.9 61 104-171 182-253 (255)
133 PRK10252 entF enterobactin syn 59.2 21 0.00045 33.2 5.3 57 103-167 1233-1291(1296)
134 KOG4627 Kynurenine formamidase 58.1 4.2 9.1E-05 30.0 0.5 62 102-170 203-268 (270)
135 KOG2112 Lysophospholipase [Lip 55.5 14 0.0003 27.1 2.8 55 106-163 144-198 (206)
136 PF06342 DUF1057: Alpha/beta h 51.7 29 0.00062 26.9 4.1 67 104-170 210-296 (297)
137 COG2939 Carboxypeptidase C (ca 49.6 38 0.00083 28.3 4.8 63 106-171 425-489 (498)
138 KOG2100 Dipeptidyl aminopeptid 47.3 39 0.00085 29.9 4.8 64 104-171 679-745 (755)
139 PF06289 FlbD: Flagellar prote 46.4 35 0.00075 19.7 3.0 35 136-172 23-57 (60)
140 COG1582 FlgEa Uncharacterized 43.5 51 0.0011 19.3 3.3 36 135-172 22-57 (67)
141 PF10929 DUF2811: Protein of u 39.1 32 0.0007 19.6 2.0 18 156-173 4-21 (57)
142 TIGR01840 esterase_phb esteras 38.3 24 0.00052 25.4 1.9 20 106-125 168-187 (212)
143 PF02129 Peptidase_S15: X-Pro 36.5 41 0.00088 25.3 3.0 19 103-121 225-243 (272)
144 PF06500 DUF1100: Alpha/beta h 35.8 40 0.00087 27.5 2.9 62 104-172 187-254 (411)
145 PF08513 LisH: LisH; InterPro 33.9 58 0.0013 15.2 2.2 13 160-172 1-13 (27)
146 KOG3363 Uncharacterized conser 32.3 47 0.001 23.5 2.4 36 133-173 104-139 (196)
147 COG4553 DepA Poly-beta-hydroxy 31.6 48 0.001 26.0 2.6 65 106-173 339-407 (415)
148 PF13341 RAG2_PHD: RAG2 PHD do 27.9 31 0.00067 20.5 0.8 19 143-161 30-48 (78)
149 PRK04940 hypothetical protein; 27.6 1.5E+02 0.0032 21.3 4.4 56 105-171 121-178 (180)
150 PF05577 Peptidase_S28: Serine 25.5 88 0.0019 25.4 3.3 37 108-154 378-414 (434)
151 smart00667 LisH Lissencephaly 25.0 89 0.0019 14.5 2.3 15 158-172 2-16 (34)
152 KOG2521 Uncharacterized conser 24.7 1E+02 0.0022 24.7 3.4 64 106-172 225-289 (350)
153 PRK06007 fliF flagellar MS-rin 24.6 55 0.0012 27.8 2.1 19 154-172 522-540 (542)
154 KOG1283 Serine carboxypeptidas 24.6 41 0.00089 26.7 1.2 37 132-169 374-410 (414)
155 PF12740 Chlorophyllase2: Chlo 23.1 1.3E+02 0.0029 22.9 3.6 51 104-159 152-211 (259)
156 PF10605 3HBOH: 3HB-oligomer h 22.8 86 0.0019 27.2 2.8 50 104-154 552-604 (690)
157 COG0693 ThiJ Putative intracel 22.8 1.2E+02 0.0026 21.3 3.3 32 139-171 65-97 (188)
158 PF04301 DUF452: Protein of un 22.4 38 0.00083 25.0 0.6 36 110-155 169-204 (213)
No 1
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.92 E-value=1.1e-24 Score=164.31 Aligned_cols=156 Identities=46% Similarity=0.803 Sum_probs=126.0
Q ss_pred cccchhccCCcChHHHhhccCCHHHHHHHHHhcCCCCCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHhccCCCcch
Q 030710 4 EGLISDVLQEPGVAEEDFAQIDTARLIKKFLGGRSPKPPCVPKEIGFRGLPDLRTLPSWLSEEDVNYYASKFSQKGFTGG 83 (173)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (173)
+++|++.||.|+.++.++++.+.+.+....+....+.+...+. .....+.|+|+++++.|...+...|+++.
T Consensus 165 ~~~y~~~fQ~~~~~E~~~s~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~w~t~edi~~~~~~f~~~g~~gp 236 (322)
T KOG4178|consen 165 KSYYICLFQEPGKPETELSKDDTEMLVKTFRTRKTPGPLIVPK--------QPNENPLWLTEEDIAFYVSKFQIDGFTGP 236 (322)
T ss_pred ccceeEeccccCcchhhhccchhHHhHHhhhccccCCccccCC--------CCCCccchhhHHHHHHHHhcccccccccc
Confidence 5788999999999999998856655555555544333222222 11122679999999999999988789999
Q ss_pred hhhhhhcccCccccCCCCCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHH
Q 030710 84 LNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVS 163 (173)
Q Consensus 84 ~~~yr~~~~~~~~~~~~~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~ 163 (173)
+||||++.++|+ ...+.+.+|++|+++|||+.|++.+.+.. .+.+++.+|++.+.++++|+|||+++|+|++||
T Consensus 237 lNyyrn~~r~w~-a~~~~~~~i~iPv~fi~G~~D~v~~~p~~-----~~~~rk~vp~l~~~vv~~~~gH~vqqe~p~~v~ 310 (322)
T KOG4178|consen 237 LNYYRNFRRNWE-AAPWALAKITIPVLFIWGDLDPVLPYPIF-----GELYRKDVPRLTERVVIEGIGHFVQQEKPQEVN 310 (322)
T ss_pred chhhHHHhhCch-hccccccccccceEEEEecCcccccchhH-----HHHHHHhhccccceEEecCCcccccccCHHHHH
Confidence 999999999987 66677889999999999999999887633 478899999876889999999999999999999
Q ss_pred HHHHHHHHhC
Q 030710 164 SHIYDFIKQF 173 (173)
Q Consensus 164 ~~i~~fl~~~ 173 (173)
++|.+|+.++
T Consensus 311 ~~i~~f~~~~ 320 (322)
T KOG4178|consen 311 QAILGFINSF 320 (322)
T ss_pred HHHHHHHHhh
Confidence 9999999863
No 2
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.48 E-value=5e-14 Score=107.78 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHhccCC-CcchhhhhhhcccCccc--------cCCCCCCCcCCceEEEeeCCCcCCCCcchhhHhhhc
Q 030710 62 WLSEEDVNYYASKFSQKG-FTGGLNYYRCLDLNWEL--------LAPWTGAQIKIPVKFMVGDLDITYHIPGIREYIQNG 132 (173)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~-~~~~~~~yr~~~~~~~~--------~~~~~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~ 132 (173)
.+++++++.|...+..++ ....++|++........ .......++++|||+|||++|..+++... .+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~-----~~ 249 (295)
T PRK03592 175 PLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAI-----RD 249 (295)
T ss_pred cCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHH-----HH
Confidence 467788888887776555 55677777765322100 00111357899999999999999854443 24
Q ss_pred cccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 133 GFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
.+.+.+++. ++++++++||+++.|+|++|++.|.+|+++
T Consensus 250 ~~~~~~~~~-~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~ 288 (295)
T PRK03592 250 WCRSWPNQL-EITVFGAGLHFAQEDSPEEIGAAIAAWLRR 288 (295)
T ss_pred HHHHhhhhc-ceeeccCcchhhhhcCHHHHHHHHHHHHHH
Confidence 456677888 999999999999999999999999999976
No 3
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.42 E-value=9.6e-13 Score=103.71 Aligned_cols=68 Identities=24% Similarity=0.481 Sum_probs=56.8
Q ss_pred CCCcCCceEEEeeCCCcCCCCcch-hhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGI-REYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
..+|++|||+|||++|+.++.+.. .+++ +.+.+.+|+. ++++++++||++++|+|++|++.|.+||++
T Consensus 288 l~~i~~PtLii~G~~D~~~p~~~~~~~~~--~~l~~~ip~~-~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 288 IPRISLPILVLWGDQDPFTPLDGPVGKYF--SSLPSQLPNV-TLYVLEGVGHCPHDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred hhhcCCCEEEEEeCCCCCcCchhhHHHHH--HhhhccCCce-EEEEcCCCCCCccccCHHHHHHHHHHHHHh
Confidence 357999999999999999876421 1111 4567788999 999999999999999999999999999975
No 4
>PLN02965 Probable pheophorbidase
Probab=99.36 E-value=7.3e-13 Score=99.42 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=57.1
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
.++++|+++|+|++|.++++.. .+.+.+.++++ +++++++||||+++|+|++|++.|.+|++.
T Consensus 190 ~~i~vP~lvi~g~~D~~~~~~~------~~~~~~~~~~a-~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 190 EAEKVPRVYIKTAKDNLFDPVR------QDVMVENWPPA-QTYVLEDSDHSAFFSVPTTLFQYLLQAVSS 252 (255)
T ss_pred hcCCCCEEEEEcCCCCCCCHHH------HHHHHHhCCcc-eEEEecCCCCchhhcCHHHHHHHHHHHHHH
Confidence 4689999999999999998644 37888999999 999999999999999999999999999874
No 5
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.35 E-value=9.1e-13 Score=100.76 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=57.7
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
..++++|||+|||++|..++.... +.+.+..++. +++.++++||++++|+|++|++.|.+|+++|
T Consensus 230 l~~i~~P~lvi~G~~D~~~~~~~~------~~~~~~~~~~-~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 230 LPAVKCPVLIAWGEKDPWEPVELG------RAYANFDAVE-DFIVLPGVGHCPQDEAPELVNPLIESFVARH 294 (294)
T ss_pred HhhcCCCeEEEEecCCCCCChHHH------HHHHhcCCcc-ceEEeCCCCCChhhhCHHHHHHHHHHHHhcC
Confidence 457999999999999999886443 5678888888 9999999999999999999999999999876
No 6
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.31 E-value=1.6e-12 Score=99.34 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=53.4
Q ss_pred cCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHH
Q 030710 105 IKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFI 170 (173)
Q Consensus 105 i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl 170 (173)
+++|||+|||++|.++++... .+.+.+.+|+. ++++|+++||++++|+|++|++.|.+||
T Consensus 226 ~~~PtliI~G~~D~~~~~~~~-----~~~~~~~ip~~-~~~~i~~aGH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 226 GTKPTLLVWGMKDVAFRPKTI-----LPRLRATFPDH-VLVELPNAKHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred CCCCeEEEecCCCcccCcHHH-----HHHHHHhcCCC-eEEEcCCCcccccccCHHHHHHHHHHhc
Confidence 389999999999998765433 36788999999 9999999999999999999999999997
No 7
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.29 E-value=3.4e-12 Score=96.66 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=57.2
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
..++++|+|+|+|++|++++++.. +.+.+.+|+. +++.++++||+++.|+|++|++.|.+||+.
T Consensus 219 l~~i~~Pvlli~G~~D~~v~~~~~------~~~~~~~~~~-~~~~i~~agH~~~~e~p~~~~~~i~~fl~~ 282 (282)
T TIGR03343 219 LGEIKAKTLVTWGRDDRFVPLDHG------LKLLWNMPDA-QLHVFSRCGHWAQWEHADAFNRLVIDFLRN 282 (282)
T ss_pred HhhCCCCEEEEEccCCCcCCchhH------HHHHHhCCCC-EEEEeCCCCcCCcccCHHHHHHHHHHHhhC
Confidence 357999999999999999886543 6778888999 999999999999999999999999999963
No 8
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.29 E-value=2.7e-12 Score=96.15 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=56.8
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
..++++|||+|+|++|.+++.+.. +.+.+.++++ ++.+++++||++++|+|++|++.|.+|-++
T Consensus 192 l~~i~~P~lii~G~~D~~~~~~~~------~~~~~~i~~~-~~~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 192 LQNVSMPFLRLYGYLDGLVPRKVV------PMLDKLWPHS-ESYIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred HhhcCCCeEEEecCCCccCCHHHH------HHHHHhCCCC-eEEEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 457999999999999998876442 6778889999 999999999999999999999999999654
No 9
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.27 E-value=5.2e-12 Score=98.15 Aligned_cols=64 Identities=27% Similarity=0.446 Sum_probs=56.5
Q ss_pred CCcC-CceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 103 AQIK-IPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 103 ~~i~-vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
+++. +|+|+|||++|++++.+.. ..+.+..||+ +++.|+++||.+|+|+|++|++.|..|++++
T Consensus 260 ~~i~~~pvlii~G~~D~~~p~~~~------~~~~~~~pn~-~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 260 KKIWKCPVLIIWGDKDQIVPLELA------EELKKKLPNA-ELVEIPGAGHLPHLERPEEVAALLRSFIARL 324 (326)
T ss_pred ccccCCceEEEEcCcCCccCHHHH------HHHHhhCCCc-eEEEeCCCCcccccCCHHHHHHHHHHHHHHh
Confidence 4565 9999999999999997643 6677767999 9999999999999999999999999999864
No 10
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.25 E-value=1.7e-11 Score=97.22 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHhccCCC-cchh-hhhhhcccCcc-----ccCCCCCCCcCCceEEEeeCCCcCCCCcchhhHhhhccc
Q 030710 62 WLSEEDVNYYASKFSQKGF-TGGL-NYYRCLDLNWE-----LLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGF 134 (173)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~-~~~~-~~yr~~~~~~~-----~~~~~~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~ 134 (173)
.+++++...|...+..++. ...+ ..++.+..... ........++++|||+|||++|.+++.... +.+
T Consensus 274 ~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~------~~~ 347 (383)
T PLN03084 274 AMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGV------EDF 347 (383)
T ss_pred CCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHH------HHH
Confidence 3566677677766655442 2122 23343321110 000011136899999999999998876543 445
Q ss_pred cccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 135 KKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 135 ~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
.+. ++. ++++|++|||++++|+|++|+++|.+|+.+
T Consensus 348 a~~-~~a-~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 348 CKS-SQH-KLIELPMAGHHVQEDCGEELGGIISGILSK 383 (383)
T ss_pred HHh-cCC-eEEEECCCCCCcchhCHHHHHHHHHHHhhC
Confidence 554 477 999999999999999999999999999864
No 11
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.23 E-value=3.3e-12 Score=90.89 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=95.4
Q ss_pred CCccccchhccCCcChHHHhhccCCHHHHHHHHHhcCCCCCCCCCCcc-ccCCCCCCCCCCCCCCHHHHHHHHH-HhccC
Q 030710 1 MHLEGLISDVLQEPGVAEEDFAQIDTARLIKKFLGGRSPKPPCVPKEI-GFRGLPDLRTLPSWLSEEDVNYYAS-KFSQK 78 (173)
Q Consensus 1 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 78 (173)
+.++++.+++|+++|+.+-..+..+++.+-|.+..+. .. ..-.++. ..+.+++.+..+....+.-.+.|.- .|.+.
T Consensus 111 Lk~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga-~a-yvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~ 188 (277)
T KOG2984|consen 111 LKLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGA-AA-YVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQ 188 (277)
T ss_pred hCCCCeeEeeecCCCeEEEEeeccChhhhhhheeecc-cc-eecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHH
Confidence 3568899999999998876666646655555443332 22 1111111 2222222111011111111111211 11110
Q ss_pred --C-CcchhhhhhhcccCccccCCCCCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChh
Q 030710 79 --G-FTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN 155 (173)
Q Consensus 79 --~-~~~~~~~yr~~~~~~~~~~~~~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~ 155 (173)
. -.+..++|.--..++ +.....+|++|+|+++|+.|++++.+.+ ..+....+.+ ++.+.+.++|-+|
T Consensus 189 wa~wvD~v~qf~~~~dG~f---Cr~~lp~vkcPtli~hG~kDp~~~~~hv------~fi~~~~~~a-~~~~~peGkHn~h 258 (277)
T KOG2984|consen 189 WAAWVDVVDQFHSFCDGRF---CRLVLPQVKCPTLIMHGGKDPFCGDPHV------CFIPVLKSLA-KVEIHPEGKHNFH 258 (277)
T ss_pred HHHHHHHHHHHhhcCCCch---HhhhcccccCCeeEeeCCcCCCCCCCCc------cchhhhcccc-eEEEccCCCccee
Confidence 0 112222222111122 2223568999999999999999987764 7888899999 9999999999999
Q ss_pred hhCHHHHHHHHHHHHHh
Q 030710 156 QEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 156 ~e~p~~v~~~i~~fl~~ 172 (173)
+.-|+++|..+.+||++
T Consensus 259 Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 259 LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred eechHHHHHHHHHHHhc
Confidence 99999999999999975
No 12
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.22 E-value=1.3e-11 Score=94.90 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=55.3
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCce---eEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQE---VIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
..++++||++|||++|+.++... +.+.+.+++. + +..++++||++++|+|++|++.|.+|+++|
T Consensus 235 l~~i~~P~lii~G~~D~~~~~~~-------~~~~~~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 235 LERWDKPFLTAFSDSDPITGGGD-------AILQKRIPGA-AGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred hhcCCCceEEEecCCCCcccCch-------HHHHhhcccc-cccceeeecCCCccchhhChHHHHHHHHHHHhcC
Confidence 35799999999999999987532 4577777876 5 789999999999999999999999999876
No 13
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.22 E-value=1.2e-11 Score=90.76 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=54.7
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFI 170 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl 170 (173)
.++++|+++|+|++|..++.... +.+.+.+++. +++.++++||+++.|+|++|++.|.+|+
T Consensus 185 ~~i~~Pvlii~g~~D~~~~~~~~------~~~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 185 QNISVPFLRLYGYLDGLVPAKVV------PYLDKLAPHS-ELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred hcCCCCEEEEeecCCcccCHHHH------HHHHHhCCCC-eEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 47999999999999999886543 5677788999 9999999999999999999999999996
No 14
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.19 E-value=2.2e-11 Score=90.86 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=57.7
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
...+++|+|+|+|++|+.++.+. .+.+.+.++++ ++++++++||++++|+|+++++.|.+||.++
T Consensus 191 ~~~~~~P~l~i~G~~D~~~~~~~------~~~~~~~~~~~-~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~~ 255 (255)
T PRK10673 191 IPAWPHPALFIRGGNSPYVTEAY------RDDLLAQFPQA-RAHVIAGAGHWVHAEKPDAVLRAIRRYLNDK 255 (255)
T ss_pred cCCCCCCeEEEECCCCCCCCHHH------HHHHHHhCCCc-EEEEeCCCCCeeeccCHHHHHHHHHHHHhcC
Confidence 34689999999999999887543 36788889999 9999999999999999999999999999865
No 15
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.18 E-value=2.4e-11 Score=92.12 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=55.5
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
..+|++|||+|||++|+++++... +.+.+.+++. +++++++ ||++++|+|+++++.|.+|+++
T Consensus 203 l~~i~~P~lii~G~~D~~v~~~~~------~~l~~~~~~~-~~~~i~~-gH~~~~e~p~~~~~~i~~fl~~ 265 (276)
T TIGR02240 203 LHKIQQPTLVLAGDDDPIIPLINM------RLLAWRIPNA-ELHIIDD-GHLFLITRAEAVAPIIMKFLAE 265 (276)
T ss_pred hhcCCCCEEEEEeCCCCcCCHHHH------HHHHHhCCCC-EEEEEcC-CCchhhccHHHHHHHHHHHHHH
Confidence 357999999999999999986543 6677888998 9999975 9999999999999999999975
No 16
>PRK07581 hypothetical protein; Validated
Probab=99.16 E-value=2.6e-11 Score=94.69 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=57.6
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCC-CCCChhhhCHHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEG-VAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
..+|++|||+|||++|..+++... +.+.+.+|++ +++++++ +||+++.|+|+.+++.|.+||.++
T Consensus 271 L~~I~~PtLvI~G~~D~~~p~~~~------~~l~~~ip~a-~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 271 LGSITAKTFVMPISTDLYFPPEDC------EAEAALIPNA-ELRPIESIWGHLAGFGQNPADIAFIDAALKEL 336 (339)
T ss_pred HhcCCCCEEEEEeCCCCCCCHHHH------HHHHHhCCCC-eEEEeCCCCCccccccCcHHHHHHHHHHHHHH
Confidence 457999999999999999886543 6678888999 9999998 999999999999999999999863
No 17
>PLN02578 hydrolase
Probab=99.13 E-value=6.3e-11 Score=93.20 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=54.9
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
..++++|+++|||++|+.++.... +.+.+.+|+. +++.+ ++||++++|+|+++++.|.+|+.
T Consensus 292 l~~i~~PvLiI~G~~D~~v~~~~~------~~l~~~~p~a-~l~~i-~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 292 LSKLSCPLLLLWGDLDPWVGPAKA------EKIKAFYPDT-TLVNL-QAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred hhcCCCCEEEEEeCCCCCCCHHHH------HHHHHhCCCC-EEEEe-CCCCCccccCHHHHHHHHHHHHh
Confidence 357999999999999998876543 6788889999 99989 68999999999999999999986
No 18
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.12 E-value=4.4e-11 Score=93.68 Aligned_cols=64 Identities=11% Similarity=0.185 Sum_probs=54.4
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccC-CCCceeEEeCC-CCCChhhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDV-PGLQEVIVMEG-VAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~-~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
..+|++|||+|+|++|..++.... +.+.+.+ |+. ++++|++ +||++++|+|++|++.|.+||.+
T Consensus 273 l~~I~~PtLvi~G~~D~~~p~~~~------~~~~~~i~p~a-~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 273 PEAIRVPTVVVAVEGDRLVPLADL------VELAEGLGPRG-SLRVLRSPYGHDAFLKETDRIDAILTTALRS 338 (343)
T ss_pred hhcCCCCeEEEEeCCCEeeCHHHH------HHHHHHcCCCC-eEEEEeCCccHHHHhcCHHHHHHHHHHHHHh
Confidence 457999999999999998885443 4555555 788 9999985 99999999999999999999975
No 19
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.10 E-value=8.6e-11 Score=95.40 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=55.6
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhh-hCHHHHHHHHHHHHHh
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQ-EKADEVSSHIYDFIKQ 172 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~-e~p~~v~~~i~~fl~~ 172 (173)
+|++|||+|||++|.++|++.. +.+.+.+|++ ++++|+++||+++. |+|+++++.|.+|.+.
T Consensus 416 ~I~vPtLII~Ge~D~ivP~~~~------~~la~~iP~a-~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 416 QLKCDVAIFHGGDDELIPVECS------YAVKAKVPRA-RVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred hCCCCEEEEEECCCCCCCHHHH------HHHHHhCCCC-EEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 5899999999999999986543 6788899999 99999999999985 9999999999999864
No 20
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.09 E-value=1.1e-10 Score=87.80 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=55.8
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
..++++|+++|+|++|..+++... +.+.+.+++. +++.++++||++++|+|+++++.|.+|++
T Consensus 216 ~~~i~~P~lii~g~~D~~vp~~~~------~~~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 216 LPRITIPLHLIAGEEDKAVPPDES------KRAATRVPTA-TLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred cccCCCCEEEEEeCCCcccCHHHH------HHHHHhccCC-eEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 457899999999999999886442 6678888998 99999999999999999999999999984
No 21
>PRK06489 hypothetical protein; Provisional
Probab=99.09 E-value=1.3e-10 Score=91.55 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=55.6
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCC----CCChhhhCHHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGV----AHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
..+|++|||+|+|++|.++++.... .+.+.+.+|+. ++++|++| ||+++ |+|+++++.|.+||+++
T Consensus 288 L~~I~~PvLvI~G~~D~~~p~~~~~----~~~la~~ip~a-~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 288 LEKIKAPVLAINSADDERNPPETGV----MEAALKRVKHG-RLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred HHhCCCCEEEEecCCCcccChhhHH----HHHHHHhCcCC-eEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhc
Confidence 4579999999999999998764310 14678889999 99999996 99997 89999999999999763
No 22
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.07 E-value=1.1e-10 Score=88.82 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=57.4
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
..-+.|||+|.|.++.+++.+.. ..+.+.+|+. +++.+++||||+|.|+|+++++.|.+|+.++
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~~~------~~~~~~fp~~-e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDEHY------PRMEKIFPNV-EVHELDEAGHWVHLEKPEEFIESISEFLEEP 313 (315)
T ss_pred cccccceeEEecCCCCCcChhHH------HHHHHhccch-heeecccCCceeecCCHHHHHHHHHHHhccc
Confidence 46789999999999999986543 6788999999 9999999999999999999999999999764
No 23
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.06 E-value=1.7e-10 Score=85.48 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=56.0
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
..++++|+++|+|++|..++.+.. +.+.+.+++. +++.++++||++++|+|+++++.|.+||+.
T Consensus 194 ~~~i~~P~l~i~g~~D~~~~~~~~------~~~~~~~~~~-~~~~~~~~gH~~~~~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 194 LDRIQHPVLLIANRDDMLVPYTQS------LRLAAALPNA-QLKLLPYGGHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred hcccCccEEEEecCcCcccCHHHH------HHHHHhcCCc-eEEEECCCCCCccccCHHHHHHHHHHHhcC
Confidence 347899999999999999886543 5667778898 999999999999999999999999999863
No 24
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.04 E-value=1.9e-10 Score=90.32 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=54.0
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccC--CCCceeEEeCCCCCChhhhCHHH----HHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDV--PGLQEVIVMEGVAHFINQEKADE----VSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~GH~~~~e~p~~----v~~~i~~fl~~~ 173 (173)
..++++|+|+|+|++|.+++.... +.+.+.+ ++. ++++++++||++++|+|++ |++.|.+||++|
T Consensus 275 l~~i~~P~Lii~G~~D~vv~~~~~------~~l~~~~~~~~~-~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~ 345 (349)
T PLN02385 275 LEEVSLPLLILHGEADKVTDPSVS------KFLYEKASSSDK-KLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSH 345 (349)
T ss_pred cccCCCCEEEEEeCCCCccChHHH------HHHHHHcCCCCc-eEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHh
Confidence 357999999999999999986543 4454544 567 9999999999999999987 889999999865
No 25
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.04 E-value=3.5e-10 Score=83.77 Aligned_cols=58 Identities=12% Similarity=0.320 Sum_probs=48.1
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
..++++|+++|||++|+.+. .. .+. .+. ++++++++||+++.|+|+++++.|.+|+..
T Consensus 184 l~~i~~P~lii~G~~D~~~~--~~-----~~~-----~~~-~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 184 LQALTFPFYYLCGERDSKFQ--AL-----AQQ-----LAL-PLHVIPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred hhccCCCeEEEEeCCcchHH--HH-----HHH-----hcC-eEEEeCCCCCchhhhChHHHHHHHHHHHhh
Confidence 45799999999999998542 11 111 267 999999999999999999999999999975
No 26
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.04 E-value=8.3e-11 Score=92.38 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=54.0
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeE-----EeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVI-----VMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
..+|++|||+|+|++|.++++..+ +.+.+.+++. +++ +++++||+++.|+|++|++.|.+||+
T Consensus 284 l~~I~~P~Lvi~G~~D~~~p~~~~------~~~a~~i~~~-~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 284 LSRIKAPFLVVSITSDWLFPPAES------RELAKALPAA-GLRVTYVEIESPYGHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred HhhCCCCEEEEEeCCccccCHHHH------HHHHHHHhhc-CCceEEEEeCCCCCcchhhcCHHHHHHHHHHHhC
Confidence 457899999999999998886543 6788888887 655 56789999999999999999999984
No 27
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.02 E-value=1.8e-10 Score=91.49 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=53.9
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCc---eeEEeC-CCCCChhhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQ---EVIVME-GVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~-~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
..+|++|||+|+|++|.++++..+ +.+.+.+++.. ++++++ ++||++++|+|++|+++|.+||.+
T Consensus 305 l~~I~~PtLvI~G~~D~~~p~~~~------~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~ 373 (379)
T PRK00175 305 LARIKARFLVVSFTSDWLFPPARS------REIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLER 373 (379)
T ss_pred HhcCCCCEEEEEECCccccCHHHH------HHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHh
Confidence 357999999999999998886543 66777777651 456664 899999999999999999999975
No 28
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.97 E-value=7.6e-10 Score=81.24 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=54.8
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
.++++|+++|+|++|+.++.+.. +.+.+.+++. +++.++++||+++.|+|+++++.|.+|++
T Consensus 190 ~~~~~Pvlii~g~~D~~~~~~~~------~~~~~~~~~~-~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 190 GAIAVPTLCIAGDQDGSTPPELV------REIADLVPGA-RFAEIRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred hhcCCCeEEEEeccCCcCChHHH------HHHHHhCCCc-eEEEECCCCCcccccChHHHHHHHHHHhC
Confidence 46899999999999999986543 5677778888 99999999999999999999999999984
No 29
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=98.95 E-value=7.1e-10 Score=83.22 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=52.6
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
.++++|+++++|++|.+ ++... +.+.+.+++. ++++++++||+++.|+|+++++.|.+||+
T Consensus 228 ~~i~~P~lii~G~~D~~-~~~~~------~~~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 228 SEIKVPTLLTVGEFDTM-TPEAA------REMQELIAGS-RLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred hccCCCEEEEecCCCcc-CHHHH------HHHHHhccCC-eEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 47899999999999985 43332 5677788898 99999999999999999999999999984
No 30
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=98.94 E-value=1.1e-09 Score=80.11 Aligned_cols=61 Identities=20% Similarity=0.453 Sum_probs=52.6
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
.++++|+++|+|++|..++ .. .+.+.+..++. +++.++++||++++|+|+++++.|.+|++
T Consensus 191 ~~~~~P~l~i~g~~D~~~~-~~------~~~~~~~~~~~-~~~~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 191 QALTIPVLYLCGEKDEKFV-QI------AKEMQKLLPNL-TLVIIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred hCCCCceEEEeeCcchHHH-HH------HHHHHhcCCCC-cEEEEcCCCCCcCccChHHHHHHHHHHhC
Confidence 4689999999999998654 22 25677788898 99999999999999999999999999984
No 31
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=98.94 E-value=1.1e-09 Score=87.61 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=50.8
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccC-CCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDV-PGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
..+|++|+++|+|++|.+.+ ... ..+.+.. ++. ++++|+++||+++.|+|++||++|.+|++.+
T Consensus 321 l~~I~vP~liI~G~~D~i~~-~~~------~~~~~~~~~~~-~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~ 385 (402)
T PLN02894 321 ASEWKVPTTFIYGRHDWMNY-EGA------VEARKRMKVPC-EIIRVPQGGHFVFLDNPSGFHSAVLYACRKY 385 (402)
T ss_pred cccCCCCEEEEEeCCCCCCc-HHH------HHHHHHcCCCC-cEEEeCCCCCeeeccCHHHHHHHHHHHHHHh
Confidence 45789999999999998765 332 2333333 346 8999999999999999999999999998753
No 32
>PHA02857 monoglyceride lipase; Provisional
Probab=98.88 E-value=2.2e-09 Score=81.29 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=53.0
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccC-CCCceeEEeCCCCCChhhhCH---HHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDV-PGLQEVIVMEGVAHFINQEKA---DEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~GH~~~~e~p---~~v~~~i~~fl~~~ 173 (173)
..++++|+|+|+|++|.++++... +.+.+.+ ++. ++++++++||.++.|+| +++.+.|.+||..+
T Consensus 205 l~~i~~Pvliv~G~~D~i~~~~~~------~~l~~~~~~~~-~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 205 IPKIKTPILILQGTNNEISDVSGA------YYFMQHANCNR-EIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred cccCCCCEEEEecCCCCcCChHHH------HHHHHHccCCc-eEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 457999999999999999987654 4444444 467 99999999999999987 46889999999753
No 33
>PLN02511 hydrolase
Probab=98.87 E-value=3.6e-09 Score=84.28 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=53.7
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHH------HHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADE------VSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~------v~~~i~~fl~~ 172 (173)
..+|++|+|+|+|++|++++.... .....+..|++ ++++++++||..++|+|+. +++.|.+||+.
T Consensus 294 L~~I~vPtLiI~g~dDpi~p~~~~-----~~~~~~~~p~~-~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 294 IKHVRVPLLCIQAANDPIAPARGI-----PREDIKANPNC-LLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEA 364 (388)
T ss_pred hccCCCCeEEEEcCCCCcCCcccC-----cHhHHhcCCCE-EEEECCCcceeccccCCCCCCCCccHHHHHHHHHHH
Confidence 457999999999999999886432 12345667899 9999999999999999987 48999999864
No 34
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.86 E-value=1.9e-09 Score=85.76 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=54.5
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCC----CCceeEEeCC-CCCChhhhCHHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVP----GLQEVIVMEG-VAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~-~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
..+|++|+|+|+|++|..+++... +.+.+.++ +. ++++|++ +||++++|+|+++++.|.+||+++
T Consensus 319 L~~I~~PtLvI~G~~D~l~p~~~~------~~la~~lp~~~~~a-~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~~ 388 (389)
T PRK06765 319 LSNIEANVLMIPCKQDLLQPPRYN------YKMVDILQKQGKYA-EVYEIESINGHMAGVFDIHLFEKKIYEFLNRK 388 (389)
T ss_pred HhcCCCCEEEEEeCCCCCCCHHHH------HHHHHHhhhcCCCe-EEEEECCCCCcchhhcCHHHHHHHHHHHHccc
Confidence 347999999999999999886543 45566664 67 8899985 999999999999999999999763
No 35
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.85 E-value=5.5e-09 Score=82.20 Aligned_cols=61 Identities=25% Similarity=0.358 Sum_probs=51.3
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
.++++|+|+|+|++|.+++.... ....++. ++..++++||++++|+|+++++.|.+||+++
T Consensus 311 ~~i~~Pvlii~g~~D~~vp~~~~---------~~l~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 371 (371)
T PRK14875 311 ASLAIPVLVIWGEQDRIIPAAHA---------QGLPDGV-AVHVLPGAGHMPQMEAAADVNRLLAEFLGKA 371 (371)
T ss_pred hcCCCCEEEEEECCCCccCHHHH---------hhccCCC-eEEEeCCCCCChhhhCHHHHHHHHHHHhccC
Confidence 46899999999999998875332 2233467 8999999999999999999999999999864
No 36
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=98.78 E-value=3.7e-09 Score=76.25 Aligned_cols=56 Identities=29% Similarity=0.493 Sum_probs=48.3
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSH 165 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~ 165 (173)
..+++|+++|+|++|..++... .+.+.+..++. +++.++++||+++.|+|++|+++
T Consensus 173 ~~~~~pvl~i~g~~D~~~~~~~------~~~~~~~~~~~-~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 173 PRIKVPVLVIHGEDDPIVPPES------AEELADKLPNA-ELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp HGSSSEEEEEEETTSSSSHHHH------HHHHHHHSTTE-EEEEETTSSSTHHHHSHHHHHHH
T ss_pred cccCCCeEEeecCCCCCCCHHH------HHHHHHHCCCC-EEEEECCCCCccHHHCHHHHhcC
Confidence 4679999999999999987433 26677778898 99999999999999999999874
No 37
>PRK10749 lysophospholipase L2; Provisional
Probab=98.76 E-value=6.6e-09 Score=81.02 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=51.5
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhcccccc-------CCCCceeEEeCCCCCChhhhCH---HHHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKD-------VPGLQEVIVMEGVAHFINQEKA---DEVSSHIYDFIK 171 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~GH~~~~e~p---~~v~~~i~~fl~ 171 (173)
..++++|+|+|+|++|++++.... +.+.+. .++. ++++++|+||.++.|.+ +.+.+.|.+|++
T Consensus 255 ~~~i~~P~Lii~G~~D~vv~~~~~------~~~~~~l~~~~~~~~~~-~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~ 327 (330)
T PRK10749 255 AGDITTPLLLLQAEEERVVDNRMH------DRFCEARTAAGHPCEGG-KPLVIKGAYHEILFEKDAMRSVALNAIVDFFN 327 (330)
T ss_pred ccCCCCCEEEEEeCCCeeeCHHHH------HHHHHHHhhcCCCCCCc-eEEEeCCCcchhhhCCcHHHHHHHHHHHHHHh
Confidence 357899999999999999987543 333332 2456 89999999999999987 668888999998
Q ss_pred hC
Q 030710 172 QF 173 (173)
Q Consensus 172 ~~ 173 (173)
++
T Consensus 328 ~~ 329 (330)
T PRK10749 328 RH 329 (330)
T ss_pred hc
Confidence 64
No 38
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.73 E-value=8.5e-09 Score=75.19 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=51.9
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIY 167 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~ 167 (173)
..+++|+++++|++|+++++... ..+.+.+|+. +.+.++++||+.++|.|+++++.|.
T Consensus 172 ~~i~~p~l~i~~~~D~~~p~~~~------~~~~~~~~~~-~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 172 SNIKVPTLIIWGEDDPLVPPESS------EQLAKLIPNS-QLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp TTTTSEEEEEEETTCSSSHHHHH------HHHHHHSTTE-EEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred cccCCCeEEEEeCCCCCCCHHHH------HHHHHhcCCC-EEEECCCCChHHHhcCHHhhhhhhc
Confidence 46999999999999999886543 5688999998 9999999999999999999999885
No 39
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.71 E-value=1.2e-08 Score=93.65 Aligned_cols=63 Identities=16% Similarity=0.336 Sum_probs=50.6
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCC------------CceeEEeCCCCCChhhhCHHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPG------------LQEVIVMEGVAHFINQEKADEVSSHIYDF 169 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~i~~~GH~~~~e~p~~v~~~i~~f 169 (173)
..++++|+|+|+|++|..++ ... ..+.+.+++ . ++++++++||+++.|+|+++++.|.+|
T Consensus 1564 L~~I~~PtLlI~Ge~D~~~~-~~a------~~~~~~i~~a~~~~~~~~~~~a-~lvvI~~aGH~~~lE~Pe~f~~~I~~F 1635 (1655)
T PLN02980 1564 LKQCDTPLLLVVGEKDVKFK-QIA------QKMYREIGKSKESGNDKGKEII-EIVEIPNCGHAVHLENPLPVIRALRKF 1635 (1655)
T ss_pred HhhCCCCEEEEEECCCCccH-HHH------HHHHHHccccccccccccccce-EEEEECCCCCchHHHCHHHHHHHHHHH
Confidence 45789999999999998764 222 233333333 5 789999999999999999999999999
Q ss_pred HHh
Q 030710 170 IKQ 172 (173)
Q Consensus 170 l~~ 172 (173)
|.+
T Consensus 1636 L~~ 1638 (1655)
T PLN02980 1636 LTR 1638 (1655)
T ss_pred HHh
Confidence 975
No 40
>PRK05855 short chain dehydrogenase; Validated
Probab=98.70 E-value=2.5e-08 Score=82.81 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
..+++|+|+|+|++|++++.... +.+.+.+++. ++++++ +||+++.|+|+++++.|.+|+.+
T Consensus 230 ~~~~~P~lii~G~~D~~v~~~~~------~~~~~~~~~~-~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~ 291 (582)
T PRK05855 230 RYTDVPVQLIVPTGDPYVRPALY------DDLSRWVPRL-WRREIK-AGHWLPMSHPQVLAAAVAEFVDA 291 (582)
T ss_pred CCccCceEEEEeCCCcccCHHHh------ccccccCCcc-eEEEcc-CCCcchhhChhHHHHHHHHHHHh
Confidence 45899999999999999886443 6777888888 888875 79999999999999999999974
No 41
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=98.70 E-value=1e-08 Score=79.76 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=51.1
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccC--CCCceeEEeCCCCCChhhhCHHH----HHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDV--PGLQEVIVMEGVAHFINQEKADE----VSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~GH~~~~e~p~~----v~~~i~~fl~~~ 173 (173)
..++++|+|+|||++|.+++.... +.+.+.+ ++. ++++++++||+++.|+|+. +.+.|.+||.++
T Consensus 247 l~~i~~PvLii~G~~D~ivp~~~~------~~l~~~i~~~~~-~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 247 LKDVSIPFIVLHGSADVVTDPDVS------RALYEEAKSEDK-TIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNER 317 (330)
T ss_pred hhhcCCCEEEEecCCCCCCCHHHH------HHHHHHhccCCc-eEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999987554 4444444 467 9999999999999998865 666788888753
No 42
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=98.67 E-value=2.8e-08 Score=75.56 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=51.2
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
++|+++|+|++|.++|++.. +.+.+.+++. +++.++ +||.+++|+|++|++.|.++..
T Consensus 211 ~vP~l~I~g~~D~~ip~~~~------~~m~~~~~~~-~~~~l~-~gH~p~ls~P~~~~~~i~~~a~ 268 (273)
T PLN02211 211 KVPRVYIKTLHDHVVKPEQQ------EAMIKRWPPS-QVYELE-SDHSPFFSTPFLLFGLLIKAAA 268 (273)
T ss_pred ccceEEEEeCCCCCCCHHHH------HHHHHhCCcc-EEEEEC-CCCCccccCHHHHHHHHHHHHH
Confidence 89999999999999987543 6777888888 899995 8999999999999999998865
No 43
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.61 E-value=2.9e-08 Score=76.39 Aligned_cols=60 Identities=20% Similarity=0.354 Sum_probs=46.8
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCC-CCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVP-GLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
+||+++|+|++|.+-...+. +....... .+ +.++|++|||.+-.++|+.+|+.|.++++.
T Consensus 303 ~~pv~fiyG~~dWmD~~~g~------~~~~~~~~~~~-~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 303 DVPVTFIYGDRDWMDKNAGL------EVTKSLMKEYV-EIIIVPGAGHHVYLDNPEFFNQIVLEECDK 363 (365)
T ss_pred CCCEEEEecCcccccchhHH------HHHHHhhcccc-eEEEecCCCceeecCCHHHHHHHHHHHHhc
Confidence 69999999999987443332 22222233 36 899999999999999999999999999875
No 44
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.60 E-value=4.6e-08 Score=78.10 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=51.7
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCC--CCceeEEeCCCCCChhhh-CHHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVP--GLQEVIVMEGVAHFINQE-KADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~GH~~~~e-~p~~v~~~i~~fl~~~ 173 (173)
..+|++|+|+|+|++|.+++.... +.+.+.++ +. +++.+++++|++..| .|+++.+.|.+||+++
T Consensus 320 L~~I~vPvLIi~G~~D~vvp~~~a------~~l~~~~~~~~k-~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~ 387 (395)
T PLN02652 320 FKSVTVPFMVLHGTADRVTDPLAS------QDLYNEAASRHK-DIKLYDGFLHDLLFEPEREEVGRDIIDWMEKR 387 (395)
T ss_pred cccCCCCEEEEEeCCCCCCCHHHH------HHHHHhcCCCCc-eEEEECCCeEEeccCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999986554 33333322 35 889999999999766 8999999999999864
No 45
>PRK10985 putative hydrolase; Provisional
Probab=98.51 E-value=2e-07 Score=72.54 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=61.6
Q ss_pred HHHHHhccC--CCcchhhhhhhcccCccccCCCCCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEe
Q 030710 70 YYASKFSQK--GFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVM 147 (173)
Q Consensus 70 ~~~~~~~~~--~~~~~~~~yr~~~~~~~~~~~~~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 147 (173)
.|.+.+..+ ++....+||+..... . ...+|++|+++|+|++|++++++.. +.+.+..++. +++++
T Consensus 223 ~fd~~~~~~~~g~~~~~~~y~~~~~~--~----~l~~i~~P~lii~g~~D~~~~~~~~------~~~~~~~~~~-~~~~~ 289 (324)
T PRK10985 223 EFDDLITARIHGFADAIDYYRQCSAL--P----LLNQIRKPTLIIHAKDDPFMTHEVI------PKPESLPPNV-EYQLT 289 (324)
T ss_pred HHhhhheeccCCCCCHHHHHHHCChH--H----HHhCCCCCEEEEecCCCCCCChhhC------hHHHHhCCCe-EEEEC
Confidence 344444444 677888888754311 1 1357999999999999999876543 4456777888 99999
Q ss_pred CCCCCChhhhCH-----HHHHHHHHHHHH
Q 030710 148 EGVAHFINQEKA-----DEVSSHIYDFIK 171 (173)
Q Consensus 148 ~~~GH~~~~e~p-----~~v~~~i~~fl~ 171 (173)
+++||+.+.|.. --.-+.+.+|+.
T Consensus 290 ~~~GH~~~~~g~~~~~~~w~~~~~~~~~~ 318 (324)
T PRK10985 290 EHGGHVGFVGGTLLKPQMWLEQRIPDWLT 318 (324)
T ss_pred CCCCceeeCCCCCCCCCccHHHHHHHHHH
Confidence 999999998852 134455566654
No 46
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.40 E-value=3.6e-07 Score=73.51 Aligned_cols=61 Identities=8% Similarity=-0.092 Sum_probs=52.6
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
.++++|+|+|+|++|+++|.+.. +.+.+..++. +++.++++ ++.|.|+++++.|.+||.++
T Consensus 352 ~~i~~PvLiI~G~~D~ivP~~~a------~~l~~~~~~~-~l~~i~~~---~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 352 RRCPTPMLSGYWKNDPFSPEEDS------RLIASSSADG-KLLEIPFK---PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred cCCCCcEEEEecCCCCCCCHHHH------HHHHHhCCCC-eEEEccCC---CccCCHHHHHHHHHHHHHHH
Confidence 46999999999999999987653 6677788999 99999986 56689999999999999864
No 47
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.28 E-value=5.1e-07 Score=68.66 Aligned_cols=66 Identities=17% Similarity=0.383 Sum_probs=48.2
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhh-hccccccC--CCCceeEEeCCCCCCh-hhhCHHHHHHHHHHHHHh
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQ-NGGFKKDV--PGLQEVIVMEGVAHFI-NQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~i~~~GH~~-~~e~p~~v~~~i~~fl~~ 172 (173)
.+++|+|++||.+|+..+. .. +.++ +..+.+.+ ++. +++.++++||++ +.+.++++++.|.+||++
T Consensus 205 ~~~~P~ll~~g~~D~~~~~-~~-~~~~~~~~~~~~l~~~~v-~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 205 RFQGPVLFILSGNDLTAQE-FA-DSVLGEPAWRGALEDPGI-ERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred hcCCcEEEEEcCcchhHHH-HH-HHhccChhhHHHhhcCCe-EEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 6799999999999987531 11 0000 03344434 788 999999999999 555569999999999974
No 48
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.27 E-value=1.5e-06 Score=63.23 Aligned_cols=63 Identities=19% Similarity=0.366 Sum_probs=49.8
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCC-CceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPG-LQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
...+++|+++|+|++|...+.... ..+.+..++ . +..+++++||+++.|+|+.+++.+.+|+.
T Consensus 217 ~~~~~~P~l~i~g~~d~~~~~~~~------~~~~~~~~~~~-~~~~~~~~gH~~~~~~p~~~~~~i~~~~~ 280 (282)
T COG0596 217 LARITVPTLIIHGEDDPVVPAELA------RRLAAALPNDA-RLVVIPGAGHFPHLEAPEAFAAALLAFLE 280 (282)
T ss_pred hccCCCCeEEEecCCCCcCCHHHH------HHHHhhCCCCc-eEEEeCCCCCcchhhcHHHHHHHHHHHHh
Confidence 456889999999999955543211 345556664 7 89999999999999999999999998654
No 49
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.25 E-value=9.7e-07 Score=68.07 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=45.4
Q ss_pred CCc-CCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 103 AQI-KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 103 ~~i-~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
.++ ++|+|+|+|++|.+++.... +.+.+.+++. ++++++++||+++.+ + ..+.|.+|+.+
T Consensus 244 ~~i~~~P~lii~g~~D~~~p~~~~------~~~~~~~~~~-~~~~~~~~gH~~~~~--~-~~~~i~~~~~~ 304 (306)
T TIGR01249 244 SKIRNIPTYIVHGRYDLCCPLQSA------WALHKAFPEA-ELKVTNNAGHSAFDP--N-NLAALVHALET 304 (306)
T ss_pred hhccCCCeEEEecCCCCCCCHHHH------HHHHHhCCCC-EEEEECCCCCCCCCh--H-HHHHHHHHHHH
Confidence 356 69999999999999986543 6778888998 999999999999632 2 44555555543
No 50
>PLN02872 triacylglycerol lipase
Probab=98.14 E-value=2.8e-06 Score=67.94 Aligned_cols=63 Identities=17% Similarity=0.384 Sum_probs=51.0
Q ss_pred CCc--CCceEEEeeCCCcCCCCcchhhHhhhccccccCCC-CceeEEeCCCCCC---hhhhCHHHHHHHHHHHHHh
Q 030710 103 AQI--KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPG-LQEVIVMEGVAHF---INQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 103 ~~i--~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~GH~---~~~e~p~~v~~~i~~fl~~ 172 (173)
.++ ++|+++++|++|..+++..+ +.+.+.+++ . +++.++++||. ...|.|++|++.|.+|+++
T Consensus 320 ~~i~~~~Pv~i~~G~~D~lv~~~dv------~~l~~~Lp~~~-~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~ 388 (395)
T PLN02872 320 SLIPKSLPLWMGYGGTDGLADVTDV------EHTLAELPSKP-ELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRS 388 (395)
T ss_pred ccCCCCccEEEEEcCCCCCCCHHHH------HHHHHHCCCcc-EEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHH
Confidence 355 68999999999999876543 455556666 5 78889999994 5679999999999999975
No 51
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.13 E-value=3.3e-06 Score=61.65 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=50.9
Q ss_pred cCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChh-hhCHHHHHHHHHHHHHhC
Q 030710 105 IKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN-QEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 105 i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~-~e~p~~v~~~i~~fl~~~ 173 (173)
+++|+|+++|++|..++.....++. +.+.+.-.+. ++.++|++||... .+...++.+.+.+|++++
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~--~~L~~~g~~~-~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLY--NALRKAGKPV-ELLIFPGEGHGFGNPENRRDWYERILDFFDKY 209 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHH--HHHHHTTSSE-EEEEETT-SSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHH--HHHHhcCCCE-EEEEcCcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 8899999999999999876654433 5555554557 9999999999664 566678999999999863
No 52
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.12 E-value=3.3e-06 Score=54.84 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=52.9
Q ss_pred cCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 105 IKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 105 i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
...|+|+|.++.|++.|.+.. +.+.+.+++. +++.+++.||-.....-.-+++++.+||..
T Consensus 33 ~~~piL~l~~~~Dp~TP~~~a------~~~~~~l~~s-~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 33 GAPPILVLGGTHDPVTPYEGA------RAMAARLPGS-RLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCCEEEEecCcCCCCcHHHH------HHHHHHCCCc-eEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 359999999999999987653 7889999998 999999999999876667889999999863
No 53
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.07 E-value=5.7e-06 Score=60.14 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCCh-hhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFI-NQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~-~~e~p~~v~~~i~~fl~~ 172 (173)
...|..|++++.|++|..++.+++ .+ .+....++-+++..++++||-+ +.+.-|.|.+.|..||+.
T Consensus 177 ~~~I~~pt~vvq~~~D~mv~~~sA-~~----Iy~~v~s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 177 LDKIYSPTLVVQGRQDEMVPAESA-NF----IYDHVESDDKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred hhhcccchhheecccCCCCCHHHH-HH----HHHhccCCcceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 347999999999999999986553 32 2444455545899999999998 567789999999999973
No 54
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.07 E-value=6.3e-06 Score=64.46 Aligned_cols=59 Identities=25% Similarity=0.421 Sum_probs=47.6
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhcccccc--CCCCceeEEeCCCCCChhhhC-HHHHHHHHHHHHH
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKD--VPGLQEVIVMEGVAHFINQEK-ADEVSSHIYDFIK 171 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~GH~~~~e~-p~~v~~~i~~fl~ 171 (173)
++|+|+|+|++|.+++.... ..+.+. .++. ++.++++++|.++.|. +++|.+.|.+||.
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~------~~~~~~~~~~~~-~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGT------VSFYNKLSISNK-ELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCEEEEEeCCCCccCHHHH------HHHHHhccCCCc-EEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 79999999999999886543 223222 2567 8899999999999885 7999999999986
No 55
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=97.94 E-value=5.6e-06 Score=68.37 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=45.1
Q ss_pred CCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHH
Q 030710 101 TGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKAD 160 (173)
Q Consensus 101 ~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~ 160 (173)
....|++|+|+|+|++|.++++... ..+.+.+++. +..+++++||.+++|+|.
T Consensus 410 dL~~I~vPvLvV~G~~D~IvP~~sa------~~l~~~i~~~-~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 410 DLSKVKVPVYIIATREDHIAPWQSA------YRGAALLGGP-KTFVLGESGHIAGVVNPP 462 (532)
T ss_pred chhhCCCCEEEEeeCCCCcCCHHHH------HHHHHHCCCC-EEEEECCCCCchHhhCCC
Confidence 3568999999999999999986543 5667788888 888999999999999985
No 56
>PRK07868 acyl-CoA synthetase; Validated
Probab=97.87 E-value=1.2e-05 Score=71.40 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=53.3
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCcee-EEeCCCCCChhh---hCHHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEV-IVMEGVAHFINQ---EKADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~GH~~~~---e~p~~v~~~i~~fl~~~ 173 (173)
..+|++|+|+|||++|+++++... +.+.+.+++. ++ .+++++||+.+. ..|+++-..|.+||.++
T Consensus 293 L~~i~~P~L~i~G~~D~ivp~~~~------~~l~~~i~~a-~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~ 361 (994)
T PRK07868 293 LADITCPVLAFVGEVDDIGQPASV------RGIRRAAPNA-EVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWL 361 (994)
T ss_pred hhhCCCCEEEEEeCCCCCCCHHHH------HHHHHhCCCC-eEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHh
Confidence 568999999999999999987543 6678888998 76 678999999763 45788888899999753
No 57
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.70 E-value=0.00011 Score=56.71 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=58.1
Q ss_pred CCcchhhhhhhcccCccccCCCCCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccc-cCCCCceeEEeCCCCCChhhh
Q 030710 79 GFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKK-DVPGLQEVIVMEGVAHFINQE 157 (173)
Q Consensus 79 ~~~~~~~~yr~~~~~~~~~~~~~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~GH~~~~e 157 (173)
|+..+..|||+...- . ...+|.+|+|+|++.+||++++... ..... ..|+. .+..-+.+||.-.+.
T Consensus 253 Gf~da~dYYr~aSs~-~-----~L~~Ir~PtLii~A~DDP~~~~~~i------P~~~~~~np~v-~l~~t~~GGHvGfl~ 319 (345)
T COG0429 253 GFADAEDYYRQASSL-P-----LLPKIRKPTLIINAKDDPFMPPEVI------PKLQEMLNPNV-LLQLTEHGGHVGFLG 319 (345)
T ss_pred CCCcHHHHHHhcccc-c-----cccccccceEEEecCCCCCCChhhC------CcchhcCCCce-EEEeecCCceEEecc
Confidence 677888899876322 1 2458999999999999999987544 33333 66777 888888899987666
Q ss_pred ----CHH-HHHHHHHHHHHh
Q 030710 158 ----KAD-EVSSHIYDFIKQ 172 (173)
Q Consensus 158 ----~p~-~v~~~i~~fl~~ 172 (173)
+|. -.-+.|.+|++.
T Consensus 320 ~~~~~~~~W~~~ri~~~l~~ 339 (345)
T COG0429 320 GKLLHPQMWLEQRILDWLDP 339 (345)
T ss_pred CccccchhhHHHHHHHHHHH
Confidence 443 455667777653
No 58
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.67 E-value=3.8e-05 Score=56.72 Aligned_cols=62 Identities=19% Similarity=0.396 Sum_probs=52.5
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
.++++|+.++.|++|..++.+.+ ..++++..+..++++++| |||...++.++|.+.|.+.+.
T Consensus 173 ~pl~~pi~~~~G~~D~~vs~~~~------~~W~~~t~~~f~l~~fdG-gHFfl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 173 APLACPIHAFGGEKDHEVSRDEL------GAWREHTKGDFTLRVFDG-GHFFLNQQREEVLARLEQHLA 234 (244)
T ss_pred CCcCcceEEeccCcchhccHHHH------HHHHHhhcCCceEEEecC-cceehhhhHHHHHHHHHHHhh
Confidence 47999999999999999886543 667788775339999976 999999999999999998875
No 59
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.66 E-value=7.6e-05 Score=63.15 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=52.6
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhh-hCHHHHHHHHHHHHHhC
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQ-EKADEVSSHIYDFIKQF 173 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~-e~p~~v~~~i~~fl~~~ 173 (173)
.++++|+|+|+|+.|.-++.+....++ +.+++.--++ +++++|+.||++.- ++-..+.+.+.+|+.+|
T Consensus 548 ~~i~~P~LliHG~~D~~v~~~q~~~~~--~aL~~~g~~~-~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~ 616 (620)
T COG1506 548 DNIKTPLLLIHGEEDDRVPIEQAEQLV--DALKRKGKPV-ELVVFPDEGHGFSRPENRVKVLKEILDWFKRH 616 (620)
T ss_pred cccCCCEEEEeecCCccCChHHHHHHH--HHHHHcCceE-EEEEeCCCCcCCCCchhHHHHHHHHHHHHHHH
Confidence 479999999999999888866543322 5666655567 99999999999975 55666788888888764
No 60
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=97.54 E-value=8.2e-05 Score=58.54 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=48.8
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCC-ceeEEeCCCCCChhhhC---HHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGL-QEVIVMEGVAHFINQEK---ADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~GH~~~~e~---p~~v~~~i~~fl~~~ 173 (173)
..++++|+++++|++|.++++... +.+.+.+++. .++..++ +||...... ++++.+.|.+||.++
T Consensus 282 l~~i~~Pvliv~G~~D~i~~~~~~------~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 282 LKNIKMPILNIYAERDHLVPPDAS------KALNDLVSSEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred HHhCCCCeEEEecCCCCcCCHHHH------HHHHHHcCCCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHhC
Confidence 347899999999999999886543 4555555542 1556665 799986654 589999999999864
No 61
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=97.49 E-value=0.00048 Score=53.18 Aligned_cols=67 Identities=22% Similarity=0.400 Sum_probs=49.9
Q ss_pred CCCcCCceEEEeeCCCcCCC-CcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCH---HHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYH-IPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKA---DEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p---~~v~~~i~~fl~~~ 173 (173)
...+++|+|++.|++|.++. .+...+++ -+.-.++. ++++++|+.|-++.|.+ +++.+.+.+|+.++
T Consensus 224 ~~~~~~PvLll~g~~D~vv~~~~~~~~~~----~~~~~~~~-~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~ 294 (298)
T COG2267 224 APAIALPVLLLQGGDDRVVDNVEGLARFF----ERAGSPDK-ELKVIPGAYHELLNEPDRAREEVLKDILAWLAEA 294 (298)
T ss_pred cccccCCEEEEecCCCccccCcHHHHHHH----HhcCCCCc-eEEecCCcchhhhcCcchHHHHHHHHHHHHHHhh
Confidence 35789999999999999987 34432111 12344566 89999999999987764 67888899998753
No 62
>PRK11460 putative hydrolase; Provisional
Probab=97.46 E-value=0.00018 Score=53.43 Aligned_cols=65 Identities=8% Similarity=0.059 Sum_probs=46.1
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
..++|+++++|++|++++.+...+. .+.+++.-.++ +.+.++++||.+..+.-+.+.+.|.++|.
T Consensus 146 ~~~~pvli~hG~~D~vvp~~~~~~~--~~~L~~~g~~~-~~~~~~~~gH~i~~~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 146 PTATTIHLIHGGEDPVIDVAHAVAA--QEALISLGGDV-TLDIVEDLGHAIDPRLMQFALDRLRYTVP 210 (232)
T ss_pred cCCCcEEEEecCCCCccCHHHHHHH--HHHHHHCCCCe-EEEEECCCCCCCCHHHHHHHHHHHHHHcc
Confidence 4578999999999999987554221 13333333345 78888999999987777777776766664
No 63
>PRK10566 esterase; Provisional
Probab=97.35 E-value=0.00016 Score=53.80 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=42.5
Q ss_pred Cc-CCceEEEeeCCCcCCCCcchhhHhhhccccccCC------CCceeEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 104 QI-KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVP------GLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 104 ~i-~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
++ ++|+|+|+|++|..++.... +.+.+.++ +. +.+.++++||.+. | ...+.+.+||+++
T Consensus 183 ~i~~~P~Lii~G~~D~~v~~~~~------~~l~~~l~~~g~~~~~-~~~~~~~~~H~~~---~-~~~~~~~~fl~~~ 248 (249)
T PRK10566 183 QLADRPLLLWHGLADDVVPAAES------LRLQQALRERGLDKNL-TCLWEPGVRHRIT---P-EALDAGVAFFRQH 248 (249)
T ss_pred hcCCCCEEEEEcCCCCcCCHHHH------HHHHHHHHhcCCCcce-EEEecCCCCCccC---H-HHHHHHHHHHHhh
Confidence 44 79999999999999987554 33333222 34 6778899999874 3 4568888998764
No 64
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00041 Score=50.62 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=44.3
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
+.+++|+|-|.|+.|.+++... ++.+.+.+++. .+..= .+||++|-.+ ...+.|.+|++
T Consensus 160 ~~i~~PSLHi~G~~D~iv~~~~------s~~L~~~~~~a-~vl~H-pggH~VP~~~--~~~~~i~~fi~ 218 (230)
T KOG2551|consen 160 RPLSTPSLHIFGETDTIVPSER------SEQLAESFKDA-TVLEH-PGGHIVPNKA--KYKEKIADFIQ 218 (230)
T ss_pred cCCCCCeeEEecccceeecchH------HHHHHHhcCCC-eEEec-CCCccCCCch--HHHHHHHHHHH
Confidence 4799999999999999988643 36788888887 55544 4699999776 44555666654
No 65
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.27 E-value=0.00073 Score=51.40 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccC-CCcchhhhhhhcccCccccCCCCCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCcee
Q 030710 66 EDVNYYASKFSQK-GFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEV 144 (173)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~~~~~yr~~~~~~~~~~~~~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (173)
+.++.|...+.+. .......|.++...+.+.... .....||+|+|.|+..+.... . .+-..+.-|.-+++
T Consensus 180 Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~--~~~~~c~vLlvvG~~Sp~~~~--v-----v~~ns~Ldp~~ttl 250 (283)
T PF03096_consen 180 DLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIE--RPSLGCPVLLVVGDNSPHVDD--V-----VEMNSKLDPTKTTL 250 (283)
T ss_dssp HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SE--CTTCCS-EEEEEETTSTTHHH--H-----HHHHHHS-CCCEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhh--cCCCCCCeEEEEecCCcchhh--H-----HHHHhhcCcccceE
Confidence 4456676666542 223444444444322122211 245679999999999987642 2 12223333443388
Q ss_pred EEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 145 IVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 145 ~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
..+++||=.+.+|+|+.+++.+.=||+.
T Consensus 251 lkv~dcGglV~eEqP~klaea~~lFlQG 278 (283)
T PF03096_consen 251 LKVADCGGLVLEEQPGKLAEAFKLFLQG 278 (283)
T ss_dssp EEETT-TT-HHHH-HHHHHHHHHHHHHH
T ss_pred EEecccCCcccccCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999975
No 66
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.08 E-value=0.004 Score=47.43 Aligned_cols=102 Identities=15% Similarity=0.225 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHhccC-CCcchhhhhhhcccC--ccccCCCCCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCC
Q 030710 64 SEEDVNYYASKFSQK-GFTGGLNYYRCLDLN--WELLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPG 140 (173)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~~~~~~~yr~~~~~--~~~~~~~~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~ 140 (173)
..+.++.|...+.+. +...-..|..+...+ ...........++||||++.|++.+.+.. .. +--.+.-|.
T Consensus 201 ~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~~~-vv------~~n~~Ldp~ 273 (326)
T KOG2931|consen 201 NSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLKCPVLLVVGDNSPHVSA-VV------ECNSKLDPT 273 (326)
T ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCccccccEEEEecCCCchhhh-hh------hhhcccCcc
Confidence 455667777777543 222222222222211 11222222336789999999999988752 11 222333333
Q ss_pred CceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 141 LQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 141 ~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
-..+..+.+||=.+++|+|..+++.+.=|++.
T Consensus 274 ~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG 305 (326)
T KOG2931|consen 274 YTTLLKMADCGGLVQEEQPGKLAEAFKYFLQG 305 (326)
T ss_pred cceEEEEcccCCcccccCchHHHHHHHHHHcc
Confidence 22788899999999999999999999999864
No 67
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=96.96 E-value=0.00054 Score=50.30 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=28.6
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhcccccc-CC-CCceeEEeCCCCCCh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKD-VP-GLQEVIVMEGVAHFI 154 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~GH~~ 154 (173)
..++++|+|+|.|++|...+...+.+.+ .+.+++. .+ +. +....+++||.+
T Consensus 111 vE~i~~piLli~g~dD~~WpS~~~a~~i-~~rL~~~~~~~~~-~~l~Y~~aGH~i 163 (213)
T PF08840_consen 111 VEKIKGPILLISGEDDQIWPSSEMAEQI-EERLKAAGFPHNV-EHLSYPGAGHLI 163 (213)
T ss_dssp GGG--SEEEEEEETT-SSS-HHHHHHHH-HHHHHCTT------EEEEETTB-S--
T ss_pred HHHcCCCEEEEEeCCCCccchHHHHHHH-HHHHHHhCCCCcc-eEEEcCCCCcee
Confidence 4478999999999999998765553332 2334443 33 35 888899999997
No 68
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=96.95 E-value=0.0011 Score=54.26 Aligned_cols=66 Identities=15% Similarity=0.366 Sum_probs=47.0
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhh-c-----------------------cccccCC-----CCceeEEeCCCCCChhh
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQN-G-----------------------GFKKDVP-----GLQEVIVMEGVAHFINQ 156 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~-~-----------------------~~~~~~~-----~~~~~~~i~~~GH~~~~ 156 (173)
.++||+..|+.|.+++..+....+.. . ...+... ++ +.+.|.+|||++|.
T Consensus 364 gikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l-~~~~V~~AGH~vp~ 442 (462)
T PTZ00472 364 GVRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGF-SFVQVYNAGHMVPM 442 (462)
T ss_pred CceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCe-EEEEECCCCccChh
Confidence 47999999999988775443222210 0 0001112 46 77888999999999
Q ss_pred hCHHHHHHHHHHHHHh
Q 030710 157 EKADEVSSHIYDFIKQ 172 (173)
Q Consensus 157 e~p~~v~~~i~~fl~~ 172 (173)
++|+.+.++|..|+..
T Consensus 443 d~P~~~~~~i~~fl~~ 458 (462)
T PTZ00472 443 DQPAVALTMINRFLRN 458 (462)
T ss_pred hHHHHHHHHHHHHHcC
Confidence 9999999999999864
No 69
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=96.95 E-value=0.00089 Score=49.02 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=40.0
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhC--------HHHHHHHHHHHHHhC
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEK--------ADEVSSHIYDFIKQF 173 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~--------p~~v~~~i~~fl~~~ 173 (173)
.++++|+++++|++|+.++.+....+ .+.+++.-... ++++++|++|-..... -++--+.+.+||++|
T Consensus 142 ~~~~~P~l~~~g~~D~~~~~~~~~~~--~~~l~~~~~~~-~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~ 217 (218)
T PF01738_consen 142 PKIKAPVLILFGENDPFFPPEEVEAL--EEALKAAGVDV-EVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRH 217 (218)
T ss_dssp GG--S-EEEEEETT-TTS-HHHHHHH--HHHHHCTTTTE-EEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC-
T ss_pred cccCCCEeecCccCCCCCChHHHHHH--HHHHHhcCCcE-EEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999886543222 24444444567 9999999999875332 234455577787765
No 70
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=96.93 E-value=0.0012 Score=48.33 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=39.4
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
++|+++++|+.|+++|.....+. .+.+++...++ +.+.+++.||-+. .+..+.+.+||++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~--~~~L~~~~~~v-~~~~~~g~gH~i~----~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKT--AEFLKAAGANV-EFHEYPGGGHEIS----PEELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHH--HHHHHCTT-GE-EEEEETT-SSS------HHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHH--HHHHHhcCCCE-EEEEcCCCCCCCC----HHHHHHHHHHHhh
Confidence 68999999999999986544222 25556665677 8999999999985 3444557788765
No 71
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=96.91 E-value=0.00037 Score=47.14 Aligned_cols=44 Identities=30% Similarity=0.526 Sum_probs=31.7
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCC-CCceeEEeCCCCCC
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVP-GLQEVIVMEGVAHF 153 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~GH~ 153 (173)
.+.++|+++++|++|..++.+.. +.+.+.++ +. ++..+++++|+
T Consensus 101 ~~~~~pv~~i~g~~D~~~~~~~~------~~~~~~~~~~~-~~~~i~g~~H~ 145 (145)
T PF12695_consen 101 AKIRIPVLFIHGENDPLVPPEQV------RRLYEALPGPK-ELYIIPGAGHF 145 (145)
T ss_dssp TTTTSEEEEEEETT-SSSHHHHH------HHHHHHHCSSE-EEEEETTS-TT
T ss_pred hccCCcEEEEEECCCCcCCHHHH------HHHHHHcCCCc-EEEEeCCCcCc
Confidence 46789999999999999876543 34434344 45 99999999995
No 72
>PRK11071 esterase YqiA; Provisional
Probab=96.89 E-value=0.001 Score=47.96 Aligned_cols=56 Identities=14% Similarity=0.040 Sum_probs=43.0
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
+..+|+++|+|++|.+++...+ .++..+. ...+++|++|-. +..+++.+.|.+|+.
T Consensus 134 ~~~~~v~iihg~~De~V~~~~a---------~~~~~~~-~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 134 ESPDLIWLLQQTGDEVLDYRQA---------VAYYAAC-RQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred CChhhEEEEEeCCCCcCCHHHH---------HHHHHhc-ceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 3677889999999999987543 2222355 677889999998 445889999999974
No 73
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=96.81 E-value=0.0015 Score=49.95 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=48.7
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCC-CCceeEEeCCCCCChhh----hCHHHHHHHHHHHHHhC
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVP-GLQEVIVMEGVAHFINQ----EKADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~GH~~~~----e~p~~v~~~i~~fl~~~ 173 (173)
..++++|.++++|++|.+..+... +.+-+.++ .=+++...||.=|-+.. |+-+.|..-|.+||+++
T Consensus 242 l~~vtvPflilHG~dD~VTDp~~S------k~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 242 LNEVTVPFLILHGTDDKVTDPKVS------KELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccccccEEEEecCCCcccCcHHH------HHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 458999999999999998876554 33333333 22488999999999875 44556777789999864
No 74
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.80 E-value=0.0017 Score=48.46 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=46.2
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
...|++|+|+|+|++|.+++...- ..+-+.+++.++-..+.|+||--.+-. .+....+..|+.
T Consensus 188 I~~i~~PVLiiHgtdDevv~~sHg------~~Lye~~k~~~epl~v~g~gH~~~~~~-~~yi~~l~~f~~ 250 (258)
T KOG1552|consen 188 ISKITCPVLIIHGTDDEVVDFSHG------KALYERCKEKVEPLWVKGAGHNDIELY-PEYIEHLRRFIS 250 (258)
T ss_pred ceeccCCEEEEecccCceeccccc------HHHHHhccccCCCcEEecCCCcccccC-HHHHHHHHHHHH
Confidence 346899999999999999987553 556666666337888999999875544 445556666664
No 75
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.78 E-value=0.0016 Score=51.15 Aligned_cols=85 Identities=12% Similarity=0.188 Sum_probs=62.1
Q ss_pred CcchhhhhhhcccCccccCCCCCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCH
Q 030710 80 FTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKA 159 (173)
Q Consensus 80 ~~~~~~~yr~~~~~~~~~~~~~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p 159 (173)
+..+..+|+.+.........+...++.+|+=.-.+..|..-.+. +.++.-.+|+......+++|||.+.|.|
T Consensus 378 i~ss~r~y~e~~~~~~r~~~~~r~~v~vPtg~a~f~~el~~~~~--------~~lrdky~nL~~~s~~~~GGhFaalE~p 449 (469)
T KOG2565|consen 378 ITSSQRFYDESFNQRQRDLALDRVQVRVPTGCARFKFELWHTSD--------DVLRDKYPNLTHSSYHPKGGHFAALEDP 449 (469)
T ss_pred chhhHHHHHHHHhHHHHHHHhhccccccchhhhccccchhhCcH--------HHHhhhcccceeeEeccCCcchhhhhCc
Confidence 67777888777543222333334578899988888888664322 4567778886466677788999999999
Q ss_pred HHHHHHHHHHHHh
Q 030710 160 DEVSSHIYDFIKQ 172 (173)
Q Consensus 160 ~~v~~~i~~fl~~ 172 (173)
+.+++-+..|++.
T Consensus 450 ~~La~D~~~FV~~ 462 (469)
T KOG2565|consen 450 KKLAQDFFSFVEK 462 (469)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999863
No 76
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=96.74 E-value=0.0026 Score=48.28 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=45.8
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
.+.+|-++|-+..|..-. +..--...+-+++.+++.+||++|++.|..|+..+..|..+|
T Consensus 268 ~~p~~klLilAg~d~LDk----------dLtiGQMQGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn 327 (343)
T KOG2564|consen 268 GLPVPKLLILAGVDRLDK----------DLTIGQMQGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRN 327 (343)
T ss_pred CCCccceeEEecccccCc----------ceeeeeeccceeeeeecccCceeccCCcchHHHHHHHHHhhh
Confidence 467888999988886532 122222334238999999999999999999999999998765
No 77
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.67 E-value=0.003 Score=50.58 Aligned_cols=64 Identities=27% Similarity=0.528 Sum_probs=42.1
Q ss_pred CceEEEeeCCCcCCCCcchhhHhhh--------------------ccccccCCCCceeEEeCCCCCChhhhCHHHHHHHH
Q 030710 107 IPVKFMVGDLDITYHIPGIREYIQN--------------------GGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHI 166 (173)
Q Consensus 107 vP~l~i~G~~D~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i 166 (173)
++||+..|..|.+++..+....+.. ....+...++ +.+.|.+|||+++.++|+...+.|
T Consensus 331 irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~l-tf~~V~~AGHmvP~dqP~~a~~m~ 409 (415)
T PF00450_consen 331 IRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNL-TFVTVRGAGHMVPQDQPEAALQMF 409 (415)
T ss_dssp -EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTE-EEEEETT--SSHHHHSHHHHHHHH
T ss_pred ceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccE-EEEEEcCCcccChhhCHHHHHHHH
Confidence 8999999999988874332222100 0111222456 788999999999999999999999
Q ss_pred HHHHH
Q 030710 167 YDFIK 171 (173)
Q Consensus 167 ~~fl~ 171 (173)
..||.
T Consensus 410 ~~fl~ 414 (415)
T PF00450_consen 410 RRFLK 414 (415)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99985
No 78
>PRK13604 luxD acyl transferase; Provisional
Probab=96.46 E-value=0.002 Score=49.75 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=36.5
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCC--CCceeEEeCCCCCChhh
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVP--GLQEVIVMEGVAHFINQ 156 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~GH~~~~ 156 (173)
.++++|+|+|+|++|..++.+.. +.+.+.+. +. ++..++|++|-+.+
T Consensus 199 ~~l~~PvLiIHG~~D~lVp~~~s------~~l~e~~~s~~k-kl~~i~Ga~H~l~~ 247 (307)
T PRK13604 199 KGLDIPFIAFTANNDSWVKQSEV------IDLLDSIRSEQC-KLYSLIGSSHDLGE 247 (307)
T ss_pred hhcCCCEEEEEcCCCCccCHHHH------HHHHHHhccCCc-EEEEeCCCccccCc
Confidence 35789999999999999997654 44444443 45 89999999998854
No 79
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=96.44 E-value=0.00065 Score=49.78 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=30.0
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCC-CceeEEeCCCCCChhhhCHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPG-LQEVIVMEGVAHFINQEKAD 160 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~GH~~~~e~p~ 160 (173)
..+|++|+|-|+|++|++++++. ++.+.+.+.+ . ++..-+ .||.+|...++
T Consensus 157 ~~~i~iPtlHv~G~~D~~~~~~~------s~~L~~~~~~~~-~v~~h~-gGH~vP~~~~~ 208 (212)
T PF03959_consen 157 EPKISIPTLHVIGENDPVVPPER------SEALAEMFDPDA-RVIEHD-GGHHVPRKKED 208 (212)
T ss_dssp -TT---EEEEEEETT-SSS-HHH------HHHHHHHHHHHE-EEEEES-SSSS----HHH
T ss_pred cccCCCCeEEEEeCCCCCcchHH------HHHHHHhccCCc-EEEEEC-CCCcCcCChhh
Confidence 45789999999999999988533 2566666666 5 677775 59999987543
No 80
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=96.26 E-value=0.0058 Score=47.70 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=37.6
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHH-HHHHHHHHHhC
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEV-SSHIYDFIKQF 173 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v-~~~i~~fl~~~ 173 (173)
++|++|+++-+|-.|+++|++... ..-..++.-+++.+++..||... .+. .+...+||.+|
T Consensus 259 ~ri~~pvl~~~gl~D~~cPP~t~f------A~yN~i~~~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 259 RRIKCPVLFSVGLQDPVCPPSTQF------AAYNAIPGPKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp GG--SEEEEEEETT-SSS-HHHHH------HHHCC--SSEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred HHcCCCEEEEEecCCCCCCchhHH------HHHhccCCCeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 479999999999999999986641 22233343358999999999763 333 66777888776
No 81
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=96.14 E-value=0.017 Score=46.18 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHHHHHHHhccC--CCcchhhhhhhcccCccccCCCCCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCcee
Q 030710 67 DVNYYASKFSQK--GFTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEV 144 (173)
Q Consensus 67 ~~~~~~~~~~~~--~~~~~~~~yr~~~~~~~~~~~~~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (173)
.+.++-+.+..+ |+.....||+...... ....|+||+|.|.+.+||++++... -.......|+. -+
T Consensus 287 SvreFD~~~t~~~~gf~~~deYY~~aSs~~------~v~~I~VP~L~ina~DDPv~p~~~i-----p~~~~~~np~v-~l 354 (409)
T KOG1838|consen 287 SVREFDEALTRPMFGFKSVDEYYKKASSSN------YVDKIKVPLLCINAADDPVVPEEAI-----PIDDIKSNPNV-LL 354 (409)
T ss_pred cHHHHHhhhhhhhcCCCcHHHHHhhcchhh------hcccccccEEEEecCCCCCCCcccC-----CHHHHhcCCcE-EE
Confidence 345555666553 5788889998764321 1347999999999999999987543 12233444676 66
Q ss_pred EEeCCCCCChhhhC
Q 030710 145 IVMEGVAHFINQEK 158 (173)
Q Consensus 145 ~~i~~~GH~~~~e~ 158 (173)
++-..+||.-.+|.
T Consensus 355 ~~T~~GGHlgfleg 368 (409)
T KOG1838|consen 355 VITSHGGHLGFLEG 368 (409)
T ss_pred EEeCCCceeeeecc
Confidence 77777899988776
No 82
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=96.02 E-value=0.0048 Score=45.16 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=39.3
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChh
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN 155 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~ 155 (173)
..+||||-++|-.|.++|.+.+ ..+++.+||- .+.+|+||.|-.-
T Consensus 197 d~~C~VLTvhGs~D~IVPve~A------kefAk~i~nH-~L~iIEgADHnyt 241 (269)
T KOG4667|consen 197 DKQCRVLTVHGSEDEIVPVEDA------KEFAKIIPNH-KLEIIEGADHNYT 241 (269)
T ss_pred CccCceEEEeccCCceeechhH------HHHHHhccCC-ceEEecCCCcCcc
Confidence 5689999999999999998765 6678889997 9999999999864
No 83
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=95.77 E-value=0.013 Score=42.04 Aligned_cols=60 Identities=23% Similarity=0.343 Sum_probs=44.3
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
.....|+++|.|+.|.++..... + +..+. ... +++++++++||.+-. -+++.+.|.+||.
T Consensus 146 ~P~P~~~lvi~g~~Ddvv~l~~~---l--~~~~~--~~~-~~i~i~~a~HFF~gK-l~~l~~~i~~~l~ 205 (210)
T COG2945 146 APCPSPGLVIQGDADDVVDLVAV---L--KWQES--IKI-TVITIPGADHFFHGK-LIELRDTIADFLE 205 (210)
T ss_pred cCCCCCceeEecChhhhhcHHHH---H--HhhcC--CCC-ceEEecCCCceeccc-HHHHHHHHHHHhh
Confidence 46788999999999988765332 1 22232 345 788899999999865 4778888999983
No 84
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=95.63 E-value=0.01 Score=43.58 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=46.6
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCC-ceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGL-QEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
++.++|.|||.|..|..+|+..| ..+-+.+|.. +++..+|++.|-=-.-. +---++|.+||.+
T Consensus 218 ~~~~~P~LFiSGlkDelVPP~~M------r~Ly~~c~S~~Krl~eFP~gtHNDT~i~-dGYfq~i~dFlaE 281 (300)
T KOG4391|consen 218 GQCRMPFLFISGLKDELVPPVMM------RQLYELCPSRTKRLAEFPDGTHNDTWIC-DGYFQAIEDFLAE 281 (300)
T ss_pred ccccCceEEeecCccccCCcHHH------HHHHHhCchhhhhheeCCCCccCceEEe-ccHHHHHHHHHHH
Confidence 46789999999999999998765 5566666642 47889999999643332 3455678888765
No 85
>COG0400 Predicted esterase [General function prediction only]
Probab=95.49 E-value=0.018 Score=42.13 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=39.4
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHH
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHI 166 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i 166 (173)
.-.+|+++++|+.|++++.....+. .+.+.+.--++ +.+.++ .||-+..|.=+.+.+.+
T Consensus 144 ~~~~pill~hG~~Dpvvp~~~~~~l--~~~l~~~g~~v-~~~~~~-~GH~i~~e~~~~~~~wl 202 (207)
T COG0400 144 LAGTPILLSHGTEDPVVPLALAEAL--AEYLTASGADV-EVRWHE-GGHEIPPEELEAARSWL 202 (207)
T ss_pred cCCCeEEEeccCcCCccCHHHHHHH--HHHHHHcCCCE-EEEEec-CCCcCCHHHHHHHHHHH
Confidence 3468999999999999987554221 23344433456 788887 79999766555544433
No 86
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=95.35 E-value=0.01 Score=47.73 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=48.8
Q ss_pred CCCcC-CceEEEeeCCCcCCCCcchhhHhhhccccccC---CC-CceeEEeCCCCCChhh---hCHHHHHHHHHHHHHhC
Q 030710 102 GAQIK-IPVKFMVGDLDITYHIPGIREYIQNGGFKKDV---PG-LQEVIVMEGVAHFINQ---EKADEVSSHIYDFIKQF 173 (173)
Q Consensus 102 ~~~i~-vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~i~~~GH~~~~---e~p~~v~~~i~~fl~~~ 173 (173)
..+|+ +|+|.|-|+.|.++++... ....+.| +. -++....+++||+-.. ...+++-..|.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt------~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQT------KAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHh------HHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 45788 9999999999999987654 4555554 42 2245666789999653 44677888999999875
No 87
>PLN02442 S-formylglutathione hydrolase
Probab=94.91 E-value=0.07 Score=40.81 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=34.7
Q ss_pred CcCCceEEEeeCCCcCCCCc-chhhHhhhccccccCCCCceeEEeCCCCCChh
Q 030710 104 QIKIPVKFMVGDLDITYHIP-GIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN 155 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~ 155 (173)
..++|+++++|++|..++.. ....+. +.+++.-.+. ++.++++.+|-.+
T Consensus 215 ~~~~pvli~~G~~D~~v~~~~~s~~~~--~~l~~~g~~~-~~~~~pg~~H~~~ 264 (283)
T PLN02442 215 DVSATILIDQGEADKFLKEQLLPENFE--EACKEAGAPV-TLRLQPGYDHSYF 264 (283)
T ss_pred ccCCCEEEEECCCCccccccccHHHHH--HHHHHcCCCe-EEEEeCCCCccHH
Confidence 46899999999999887742 122222 4444444456 8999999999876
No 88
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=94.91 E-value=0.036 Score=40.76 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=44.0
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCC-CCceeEEeCCCCCChh-----hhCH------HHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVP-GLQEVIVMEGVAHFIN-----QEKA------DEVSSHIYDF 169 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~GH~~~-----~e~p------~~v~~~i~~f 169 (173)
...+++|+|++.|+.|..+|+..... . .+.+.+... +. ++.+++|.||-.. .+.| |+.-+.++.|
T Consensus 160 ~~~vk~Pilfl~ae~D~~~p~~~v~~-~-ee~lk~~~~~~~-~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~W 236 (242)
T KOG3043|consen 160 IANVKAPILFLFAELDEDVPPKDVKA-W-EEKLKENPAVGS-QVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISW 236 (242)
T ss_pred HhcCCCCEEEEeecccccCCHHHHHH-H-HHHHhcCcccce-eEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHH
Confidence 34789999999999999988755411 1 122222222 23 7999999999755 3344 4455666777
Q ss_pred HHh
Q 030710 170 IKQ 172 (173)
Q Consensus 170 l~~ 172 (173)
+..
T Consensus 237 f~~ 239 (242)
T KOG3043|consen 237 FKH 239 (242)
T ss_pred HHH
Confidence 654
No 89
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=94.89 E-value=0.039 Score=43.47 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=52.2
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCce-eEEe-CCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQE-VIVM-EGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i-~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
+.+|++|+|++.-+.|..+|++.. ..+.+.++.. . ++.| ...||-..+...+.+...|..||..
T Consensus 302 l~~i~~~~lv~gi~sD~lfp~~~~------~~~~~~L~~~-~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 302 LARIKAPVLVVGITSDWLFPPELQ------RALAEALPAA-GALREIDSPYGHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred HhcCccCEEEEEecccccCCHHHH------HHHHHhcccc-CceEEecCCCCchhhhcchhhhhHHHHHHhhc
Confidence 457999999999999999997654 5677777766 4 5444 4589999999999999999999975
No 90
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=94.88 E-value=0.034 Score=41.35 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=49.7
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChh-hhCHHHHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN-QEKADEVSSHIYDFI 170 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~-~e~p~~v~~~i~~fl 170 (173)
...++|-|+|.++.|.+++.....+++ +..++.--++ +...+++++|-.| .+.|++-.+++.+|+
T Consensus 175 ~~~~~p~lylYS~~D~l~~~~~ve~~~--~~~~~~G~~V-~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 175 SPSRCPRLYLYSKADPLIPWRDVEEHA--EEARRKGWDV-RAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCCeEEecCCCCcCcCHHHHHHHH--HHHHHcCCeE-EEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 356799999999999999987665544 3333322235 7788899999997 677999999998884
No 91
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=94.84 E-value=0.054 Score=42.27 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=44.8
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhh------------------ccccccCCC-CceeEEeCCCCCChhhhCHHHHHHHH
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQN------------------GGFKKDVPG-LQEVIVMEGVAHFINQEKADEVSSHI 166 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~------------------~~~~~~~~~-~~~~~~i~~~GH~~~~e~p~~v~~~i 166 (173)
.++||+-.|+.|.+++..+....+.. ....+...+ + +.+.|-+|||+++ .+|+...+.+
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~l-tf~~V~~AGHmV~-~qP~~al~m~ 310 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKM-TFATIKAGGHTAE-YRPNETFIMF 310 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcc-eEEEEcCCCCCCC-cCHHHHHHHH
Confidence 37999999999977765333222100 011111123 6 7888889999997 5999999999
Q ss_pred HHHHHh
Q 030710 167 YDFIKQ 172 (173)
Q Consensus 167 ~~fl~~ 172 (173)
..|+..
T Consensus 311 ~~fi~~ 316 (319)
T PLN02213 311 QRWISG 316 (319)
T ss_pred HHHHcC
Confidence 999864
No 92
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=94.81 E-value=0.069 Score=42.44 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=45.8
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
++++|.++|.|..|.++.++.. ..+-..+|+-+.+..+|++||-.-. ..+.+.|..|+.
T Consensus 260 rL~~PK~ii~atgDeFf~pD~~------~~y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~ 318 (367)
T PF10142_consen 260 RLTMPKYIINATGDEFFVPDSS------NFYYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYN 318 (367)
T ss_pred hcCccEEEEecCCCceeccCch------HHHHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHH
Confidence 6799999999999998777664 4455556765578999999999866 556666777765
No 93
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=94.79 E-value=0.072 Score=46.49 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=42.2
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCCh-hhhCHHHHHHHHHHHHHhC
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFI-NQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~-~~e~p~~v~~~i~~fl~~~ 173 (173)
.+|++|+|+|+|..|..++.....+.. +.+++.-... ++.+. ..||+. ....+.++.+.+.+|++++
T Consensus 452 ~kIkvPvLlIhGw~D~~V~~~~s~~ly--~aL~~~g~pk-kL~l~-~g~H~~~~~~~~~d~~e~~~~Wfd~~ 519 (767)
T PRK05371 452 DKIKASVLVVHGLNDWNVKPKQVYQWW--DALPENGVPK-KLFLH-QGGHVYPNNWQSIDFRDTMNAWFTHK 519 (767)
T ss_pred hCCCCCEEEEeeCCCCCCChHHHHHHH--HHHHhcCCCe-EEEEe-CCCccCCCchhHHHHHHHHHHHHHhc
Confidence 479999999999999988754331111 2333321223 55444 458964 3445677888888888754
No 94
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=94.77 E-value=0.062 Score=40.33 Aligned_cols=63 Identities=13% Similarity=0.247 Sum_probs=43.1
Q ss_pred CcC-CceEEEeeCCCcCCCCcchhhHhhhccccccCC-CCceeEEeCCCCCChhhhCHH---HHHHHHHHHHHh
Q 030710 104 QIK-IPVKFMVGDLDITYHIPGIREYIQNGGFKKDVP-GLQEVIVMEGVAHFINQEKAD---EVSSHIYDFIKQ 172 (173)
Q Consensus 104 ~i~-vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~GH~~~~e~p~---~v~~~i~~fl~~ 172 (173)
++. .|+|+++|.+|..++..... +.+..... .. +...+++++|......+. +....+.+|+.+
T Consensus 229 ~i~~~P~l~~~G~~D~~vp~~~~~-----~~~~~~~~~~~-~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~ 296 (299)
T COG1073 229 KISPRPVLLVHGERDEVVPLRDAE-----DLYEAARERPK-KLLFVPGGGHIDLYDNPPAVEQALDKLAEFLER 296 (299)
T ss_pred hcCCcceEEEecCCCcccchhhhH-----HHHhhhccCCc-eEEEecCCccccccCccHHHHHHHHHHHHHHHH
Confidence 455 79999999999999865541 22222222 34 777888999998764433 566677778765
No 95
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.60 E-value=0.16 Score=37.85 Aligned_cols=68 Identities=15% Similarity=0.306 Sum_probs=43.9
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhC-----------HHHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEK-----------ADEVSSHIYDFI 170 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~-----------p~~v~~~i~~fl 170 (173)
..++++|+|++.|+.|..++......+ ...+.+...+. ++.++++++|-..-+. -+.-.+.+.+|+
T Consensus 154 ~~~~~~pvl~~~~~~D~~~p~~~~~~~--~~~~~~~~~~~-~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff 230 (236)
T COG0412 154 APKIKVPVLLHLAGEDPYIPAADVDAL--AAALEDAGVKV-DLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFF 230 (236)
T ss_pred cccccCcEEEEecccCCCCChhHHHHH--HHHHHhcCCCe-eEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHH
Confidence 348999999999999999886543111 12233332345 8899999989877442 233445566666
Q ss_pred Hh
Q 030710 171 KQ 172 (173)
Q Consensus 171 ~~ 172 (173)
++
T Consensus 231 ~~ 232 (236)
T COG0412 231 KR 232 (236)
T ss_pred HH
Confidence 54
No 96
>PLN02209 serine carboxypeptidase
Probab=94.56 E-value=0.11 Score=42.46 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=46.1
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhh------c------------cccccCCC-CceeEEeCCCCCChhhhCHHHHHHHH
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQN------G------------GFKKDVPG-LQEVIVMEGVAHFINQEKADEVSSHI 166 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~------~------------~~~~~~~~-~~~~~~i~~~GH~~~~e~p~~v~~~i 166 (173)
.+++|+..|+.|.+++..+....+.. + ...+...| + +.+.|-+|||.++ .+|++..+.+
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~L-tfv~V~~AGHmVp-~qP~~al~m~ 428 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKM-TFATVKGGGHTAE-YLPEESSIMF 428 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCce-EEEEEcCCCCCcC-cCHHHHHHHH
Confidence 47999999999988876443222200 0 11122234 6 7888999999997 5999999999
Q ss_pred HHHHHh
Q 030710 167 YDFIKQ 172 (173)
Q Consensus 167 ~~fl~~ 172 (173)
..|+..
T Consensus 429 ~~fi~~ 434 (437)
T PLN02209 429 QRWISG 434 (437)
T ss_pred HHHHcC
Confidence 999864
No 97
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=94.50 E-value=0.062 Score=42.22 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=48.2
Q ss_pred CceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCCh-hhhCHHHHHHHHHHHHHh
Q 030710 107 IPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFI-NQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 107 vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~-~~e~p~~v~~~i~~fl~~ 172 (173)
-.+.+|.+++|.++|..++ ..+++.-|++ ++..+++ ||.. .+-+.+.+.++|.+-+++
T Consensus 290 ~~ii~V~A~~DaYVPr~~v------~~Lq~~WPGs-EvR~l~g-GHVsA~L~~q~~fR~AI~Daf~R 348 (348)
T PF09752_consen 290 SAIIFVAAKNDAYVPRHGV------LSLQEIWPGS-EVRYLPG-GHVSAYLLHQEAFRQAIYDAFER 348 (348)
T ss_pred CcEEEEEecCceEechhhc------chHHHhCCCC-eEEEecC-CcEEEeeechHHHHHHHHHHhhC
Confidence 4578999999999987665 6889999999 9999976 9996 466779999999887653
No 98
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=94.42 E-value=0.013 Score=41.47 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=34.8
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhC
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEK 158 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~ 158 (173)
..+.+|+++|.+++|++++.+.. ..+++.. ++ +++.++++||+...+-
T Consensus 111 ~~l~~~~~viaS~nDp~vp~~~a------~~~A~~l-~a-~~~~~~~~GHf~~~~G 158 (171)
T PF06821_consen 111 DPLPFPSIVIASDNDPYVPFERA------QRLAQRL-GA-ELIILGGGGHFNAASG 158 (171)
T ss_dssp CHHHCCEEEEEETTBSSS-HHHH------HHHHHHH-T--EEEEETS-TTSSGGGT
T ss_pred cccCCCeEEEEcCCCCccCHHHH------HHHHHHc-CC-CeEECCCCCCcccccC
Confidence 35678999999999999986543 4445444 67 8999999999987654
No 99
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=94.35 E-value=0.055 Score=45.33 Aligned_cols=63 Identities=27% Similarity=0.371 Sum_probs=45.6
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhC---------HHHHHHHHHHHHHh
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEK---------ADEVSSHIYDFIKQ 172 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~---------p~~v~~~i~~fl~~ 172 (173)
.+++|+|||.|.+|..+++..+ +.+++.+.-..++++|.+++|-+-.-. -.+|+..|.+++.+
T Consensus 302 dmk~PVLFV~Gsnd~mcspn~M------E~vreKMqA~~elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~e 373 (784)
T KOG3253|consen 302 DMKQPVLFVIGSNDHMCSPNSM------EEVREKMQAEVELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKE 373 (784)
T ss_pred hcCCceEEEecCCcccCCHHHH------HHHHHHhhccceEEEecCCCccccCCccccccccccHHHHHHHHHHHHHH
Confidence 5789999999999988887666 455544443228999999999875544 34666666666654
No 100
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=94.34 E-value=0.022 Score=43.91 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=10.6
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCC---ceeEEeCCCCCChhhhCHH----HHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGL---QEVIVMEGVAHFINQEKAD----EVSSHIYDFIK 171 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~GH~~~~e~p~----~v~~~i~~fl~ 171 (173)
..+|.+|+|++.+++|.++|.. ..+....+.+++.++.. ....+||||+|-+-.+..+ .+.+.|..||+
T Consensus 228 fG~v~~plLvl~Sg~DEyvP~~-vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 228 FGKVSKPLLVLYSGKDEYVPPW-VDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp GGG--S-EEEEEE--TT------------------------------------------------------------
T ss_pred hccCCCceEEEecCCCceeccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 4578999999999999988752 21111124444444321 1346899999999654433 46667777763
No 101
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=93.98 E-value=0.16 Score=41.43 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=45.5
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhh------c------------cccccCCC-CceeEEeCCCCCChhhhCHHHHHHHH
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQN------G------------GFKKDVPG-LQEVIVMEGVAHFINQEKADEVSSHI 166 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~------~------------~~~~~~~~-~~~~~~i~~~GH~~~~e~p~~v~~~i 166 (173)
.++||+..|+.|.+++..+....+.. . ...+...+ + +.+.|-+|||.++ .+|+...+.+
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~l-tfv~V~~AGHmVp-~qP~~al~m~ 424 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKM-TFATIKAGGHTAE-YRPNETFIMF 424 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCce-EEEEEcCCCCCCC-CCHHHHHHHH
Confidence 47999999999988876553222200 0 01111123 6 7788899999997 5999999999
Q ss_pred HHHHHh
Q 030710 167 YDFIKQ 172 (173)
Q Consensus 167 ~~fl~~ 172 (173)
..|+..
T Consensus 425 ~~Fi~~ 430 (433)
T PLN03016 425 QRWISG 430 (433)
T ss_pred HHHHcC
Confidence 999864
No 102
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=92.82 E-value=0.23 Score=40.69 Aligned_cols=65 Identities=18% Similarity=0.329 Sum_probs=44.7
Q ss_pred CceEEEeeCCCcCCCCcchhhHh------hhccccccC-------------CCCceeEEeCCCCCChhhhCHHHHHHHHH
Q 030710 107 IPVKFMVGDLDITYHIPGIREYI------QNGGFKKDV-------------PGLQEVIVMEGVAHFINQEKADEVSSHIY 167 (173)
Q Consensus 107 vP~l~i~G~~D~~~~~~~~~~~~------~~~~~~~~~-------------~~~~~~~~i~~~GH~~~~e~p~~v~~~i~ 167 (173)
.++++..|+.|.+++.-+-...+ ....++.+. .++ ....|.||||.++.++|+.--..+.
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~l-tf~tVrGaGH~VP~~~p~~al~m~~ 442 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGL-TFATVRGAGHMVPYDKPESALIMFQ 442 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCE-EEEEEeCCcccCCCCCcHHHHHHHH
Confidence 79999999999887753321110 001111111 224 5578889999999999999999999
Q ss_pred HHHHh
Q 030710 168 DFIKQ 172 (173)
Q Consensus 168 ~fl~~ 172 (173)
.|+..
T Consensus 443 ~fl~g 447 (454)
T KOG1282|consen 443 RFLNG 447 (454)
T ss_pred HHHcC
Confidence 99864
No 103
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=91.90 E-value=0.17 Score=36.58 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=43.9
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCCC-CceeEEeCCCCCChhhhCH---HHHHHHHHHHHHhC
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPG-LQEVIVMEGVAHFINQEKA---DEVSSHIYDFIKQF 173 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~GH~~~~e~p---~~v~~~i~~fl~~~ 173 (173)
+++.|-|-|+.|.+...... .. +..+...+|. .+..++.+||||+--..=+ ++|.-.|.+|+.+|
T Consensus 134 ~taLlTVEGe~DDIsg~GQT-~A--A~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~~ 202 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQT-HA--AHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQH 202 (202)
T ss_pred cceeEEeecCcccCCcchHH-HH--HHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHhC
Confidence 56777899999988765432 11 2344444443 2356678899999765543 67888899999875
No 104
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=91.85 E-value=0.12 Score=43.21 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=34.0
Q ss_pred CCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCCh
Q 030710 101 TGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFI 154 (173)
Q Consensus 101 ~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~ 154 (173)
.+.+|++|+++|.|+.|.++|+.++ ....+.+.+-++.+.. .+||.-
T Consensus 436 dL~~I~~Pvl~va~~~DHIvPw~s~------~~~~~l~gs~~~fvl~-~gGHIg 482 (560)
T TIGR01839 436 DLKKVKCDSFSVAGTNDHITPWDAV------YRSALLLGGKRRFVLS-NSGHIQ 482 (560)
T ss_pred chhcCCCCeEEEecCcCCcCCHHHH------HHHHHHcCCCeEEEec-CCCccc
Confidence 3568999999999999999998664 4455566543255555 578863
No 105
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=91.60 E-value=0.13 Score=41.45 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=36.8
Q ss_pred CCCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhh
Q 030710 101 TGAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQ 156 (173)
Q Consensus 101 ~~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~ 156 (173)
.+..|+||++.+.|+.|-+.|+.+. -...+.++|-++++.. ++||..-.
T Consensus 325 dL~~It~pvy~~a~~~DhI~P~~Sv------~~g~~l~~g~~~f~l~-~sGHIa~v 373 (445)
T COG3243 325 DLGDITCPVYNLAAEEDHIAPWSSV------YLGARLLGGEVTFVLS-RSGHIAGV 373 (445)
T ss_pred chhhcccceEEEeecccccCCHHHH------HHHHHhcCCceEEEEe-cCceEEEE
Confidence 3568999999999999999987664 4567777773155555 78998643
No 106
>PRK10162 acetyl esterase; Provisional
Probab=91.54 E-value=0.39 Score=37.37 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=42.1
Q ss_pred CceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChh-----hhCHHHHHHHHHHHHHh
Q 030710 107 IPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN-----QEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 107 vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~-----~e~p~~v~~~i~~fl~~ 172 (173)
.|+++++|+.|+.... ...|. +.+++.--.+ ++++++|+.|-.. .+...+..+.+.+|+++
T Consensus 249 Pp~~i~~g~~D~L~de--~~~~~--~~L~~aGv~v-~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~ 314 (318)
T PRK10162 249 PPCFIAGAEFDPLLDD--SRLLY--QTLAAHQQPC-EFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTA 314 (318)
T ss_pred CCeEEEecCCCcCcCh--HHHHH--HHHHHcCCCE-EEEEECCCceehhhccCchHHHHHHHHHHHHHHHH
Confidence 5999999999998752 22332 5555544456 9999999999653 23345666777788765
No 107
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=91.50 E-value=0.61 Score=35.39 Aligned_cols=48 Identities=10% Similarity=0.015 Sum_probs=32.8
Q ss_pred cCCceEEEeeCCCcCCCC-cchhhHhhhccccccCCCCceeEEeCCCCCChh
Q 030710 105 IKIPVKFMVGDLDITYHI-PGIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN 155 (173)
Q Consensus 105 i~vP~l~i~G~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~ 155 (173)
...|+++++|+.|+.++. .....+ .+.+++.--.. ++...+|++|-..
T Consensus 210 ~~~plli~~G~~D~~v~~~~~~~~~--~~~l~~~g~~v-~~~~~~g~~H~f~ 258 (275)
T TIGR02821 210 RHSTILIDQGTADQFLDEQLRPDAF--EQACRAAGQAL-TLRRQAGYDHSYY 258 (275)
T ss_pred cCCCeeEeecCCCcccCccccHHHH--HHHHHHcCCCe-EEEEeCCCCccch
Confidence 457889999999998886 222111 24444443446 8889999999874
No 108
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=90.80 E-value=0.55 Score=34.19 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=44.2
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhh-CHHHHHHHHHHHH
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQE-KADEVSSHIYDFI 170 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e-~p~~v~~~i~~fl 170 (173)
.+|.++.....|+....... . . ...+.+++++..+++.++| +|+-.+. +..++++.|.++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~-~-~-~~~W~~~~~~~~~~~~v~G-~H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 168 KVPITLFYALDDPLVSMDRL-E-E-ADRWWDYTSGDVEVHDVPG-DHFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp SSEEEEEEECSSSSSSHHCG-G-H-HCHHHGCBSSSEEEEEESS-ETTGHHSTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCccccchhh-h-h-HHHHHHhcCCCcEEEEEcC-CCcEecchHHHHHHHHHhccC
Confidence 56788898998887653311 0 0 2447788886437888965 9999886 8889999998876
No 109
>PRK10115 protease 2; Provisional
Probab=90.25 E-value=0.67 Score=40.14 Aligned_cols=49 Identities=8% Similarity=0.018 Sum_probs=34.7
Q ss_pred CcCCce-EEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEe---CCCCCChh
Q 030710 104 QIKIPV-KFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVM---EGVAHFIN 155 (173)
Q Consensus 104 ~i~vP~-l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~GH~~~ 155 (173)
+++.|+ |+++|.+|+-+++....++. ..+++.-.+. +.+++ +++||.-.
T Consensus 603 ~~~~P~lLi~~g~~D~RV~~~~~~k~~--a~Lr~~~~~~-~~vl~~~~~~~GHg~~ 655 (686)
T PRK10115 603 AQAYPHLLVTTGLHDSQVQYWEPAKWV--AKLRELKTDD-HLLLLCTDMDSGHGGK 655 (686)
T ss_pred ccCCCceeEEecCCCCCcCchHHHHHH--HHHHhcCCCC-ceEEEEecCCCCCCCC
Confidence 578895 56699999888876665554 5555544445 66677 89999843
No 110
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=89.80 E-value=0.83 Score=32.24 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCCh----------hhhCHHHHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFI----------NQEKADEVSSHIYDFIK 171 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~----------~~e~p~~v~~~i~~fl~ 171 (173)
+.-+++|+|+.+|+.|.+-..+..+.| ...+.. +++.+.++.|-+ ..++=...+..|..|++
T Consensus 138 L~gl~tPtli~qGtrD~fGtr~~Va~y-------~ls~~i-ev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~ 209 (213)
T COG3571 138 LTGLKTPTLITQGTRDEFGTRDEVAGY-------ALSDPI-EVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWAR 209 (213)
T ss_pred ccCCCCCeEEeecccccccCHHHHHhh-------hcCCce-EEEEeccCccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 346899999999999998654433211 122335 888888888865 22333456666777765
Q ss_pred h
Q 030710 172 Q 172 (173)
Q Consensus 172 ~ 172 (173)
+
T Consensus 210 ~ 210 (213)
T COG3571 210 R 210 (213)
T ss_pred h
Confidence 4
No 111
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=0.88 Score=34.70 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=45.9
Q ss_pred eEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCCh-hhhCHHHHHHHHHHHHHh
Q 030710 109 VKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFI-NQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 109 ~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~-~~e~p~~v~~~i~~fl~~ 172 (173)
+.++.+++|.+++..+. ..+++.-||+ ++..++ .||-. -+-+-+++.+.|.+-|++
T Consensus 309 ~ivv~A~~D~Yipr~gv------~~lQ~~WPg~-eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGV------RSLQEIWPGC-EVRYLE-GGHVSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred EEEEEecCCccccccCc------HHHHHhCCCC-EEEEee-cCceeeeehhchHHHHHHHHHHHh
Confidence 46778889999887554 6778888999 999998 59986 477789999999998875
No 112
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.98 E-value=0.82 Score=34.96 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=41.9
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
.+|++|+|+..|-.|++++++.. =++-...+..++..+++.=+ |++-|.-.++.+..|+.
T Consensus 256 ~RiK~pvL~svgL~D~vcpPstq------FA~yN~l~~~K~i~iy~~~a---He~~p~~~~~~~~~~l~ 315 (321)
T COG3458 256 ARIKVPVLMSVGLMDPVCPPSTQ------FAAYNALTTSKTIEIYPYFA---HEGGPGFQSRQQVHFLK 315 (321)
T ss_pred HhhccceEEeecccCCCCCChhh------HHHhhcccCCceEEEeeccc---cccCcchhHHHHHHHHH
Confidence 47999999999999999998654 12333444444667776655 55667777777777765
No 113
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=88.01 E-value=0.52 Score=36.31 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=35.9
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccC-CCCceeEEeCCCCCChh
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDV-PGLQEVIVMEGVAHFIN 155 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~GH~~~ 155 (173)
..++|+++.+|..|.++|.....++. +.+++.- .++ +.+.+++.+|...
T Consensus 217 ~P~~Pv~i~~g~~D~vvP~~~~~~l~--~~~c~~G~a~V-~~~~~~~~~H~~~ 266 (290)
T PF03583_consen 217 TPTVPVLIYQGTADEVVPPADTDALV--AKWCAAGGADV-EYVRYPGGGHLGA 266 (290)
T ss_pred CCCCCEEEEecCCCCCCChHHHHHHH--HHHHHcCCCCE-EEEecCCCChhhh
Confidence 45899999999999999876654333 3444444 456 7888888999864
No 114
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=86.17 E-value=2.6 Score=29.68 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=40.6
Q ss_pred CCcCCceEEEeeCCCcCC-CCcchhhHhhhccccccCCC-CceeEEeCCCCCChh-hhCHHHHHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITY-HIPGIREYIQNGGFKKDVPG-LQEVIVMEGVAHFIN-QEKADEVSSHIYDF 169 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~GH~~~-~e~p~~v~~~i~~f 169 (173)
..+.+|+.++.|++|... +... .+.+.+...+ . ++..+++ +|+.. .+.+..+.+.|..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~------~~~W~~~~~~~~-~~~~~~g-~H~~~~~~~~~~~~~~~~~~ 211 (212)
T smart00824 150 GPVAAPTLLVRASEPLAEWPDED------PDGWRAHWPLPH-TVVDVPG-DHFTMMEEHAAATARAVHDW 211 (212)
T ss_pred CCCCCCEEEEeccCCCCCCCCCC------cccccCCCCCCc-eeEEccC-chHHHHHHhHHHHHHHHHhh
Confidence 467899999999988653 2121 1456666554 5 8888865 88876 56777777777665
No 115
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=86.04 E-value=0.94 Score=36.64 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=36.8
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
.++.++|+|.|.|++|+++|.+.. ..+...-.+. +...++... ++.-- +.-...+.+||++
T Consensus 348 ~rr~~~plL~i~~~~D~v~P~eD~------~lia~~s~~g-k~~~~~~~~--~~~gy-~~al~~~~~Wl~~ 408 (411)
T PF06500_consen 348 GRRCPTPLLAINGEDDPVSPIEDS------RLIAESSTDG-KALRIPSKP--LHMGY-PQALDEIYKWLED 408 (411)
T ss_dssp SS-BSS-EEEEEETT-SSS-HHHH------HHHHHTBTT--EEEEE-SSS--HHHHH-HHHHHHHHHHHHH
T ss_pred CCCCCcceEEeecCCCCCCCHHHH------HHHHhcCCCC-ceeecCCCc--cccch-HHHHHHHHHHHHH
Confidence 468899999999999999986543 3455555556 777776543 23332 3556667788765
No 116
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=85.94 E-value=1.9 Score=34.54 Aligned_cols=61 Identities=11% Similarity=0.207 Sum_probs=45.6
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
.++..|..+|-|..|.++++++. ..+-..+|+.+.+.++|++.|..- +..+...|..|+.+
T Consensus 326 ~RLalpKyivnaSgDdff~pDsa------~lYyd~LPG~kaLrmvPN~~H~~~---n~~i~esl~~flnr 386 (507)
T COG4287 326 LRLALPKYIVNASGDDFFVPDSA------NLYYDDLPGEKALRMVPNDPHNLI---NQFIKESLEPFLNR 386 (507)
T ss_pred hhccccceeecccCCcccCCCcc------ceeeccCCCceeeeeCCCCcchhh---HHHHHHHHHHHHHH
Confidence 46889999999998888777664 677788898767899999999863 44455555555543
No 117
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=85.90 E-value=0.52 Score=33.50 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=34.6
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhh
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQE 157 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e 157 (173)
.++.-|+++|..++|++++.+.. +.+++... . .++.+.++||+--.+
T Consensus 114 ~~lpfps~vvaSrnDp~~~~~~a------~~~a~~wg-s-~lv~~g~~GHiN~~s 160 (181)
T COG3545 114 EPLPFPSVVVASRNDPYVSYEHA------EDLANAWG-S-ALVDVGEGGHINAES 160 (181)
T ss_pred ccCCCceeEEEecCCCCCCHHHH------HHHHHhcc-H-hheecccccccchhh
Confidence 36778999999999999987553 44555444 3 677888899987543
No 118
>PLN00021 chlorophyllase
Probab=83.90 E-value=2.5 Score=32.96 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=32.1
Q ss_pred CcCCceEEEeeCCCc---------CCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCH
Q 030710 104 QIKIPVKFMVGDLDI---------TYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKA 159 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p 159 (173)
.+.+|+|+|.+..|. +.+. .. .+ .+-+.++-+.. ...+++++||+-.+|..
T Consensus 187 ~~~~P~liig~g~~~~~~~~~~p~~ap~-~~-~~--~~f~~~~~~~~-~~~~~~~~gH~~~~~~~ 246 (313)
T PLN00021 187 NLDIPVLVIGTGLGGEPRNPLFPPCAPD-GV-NH--AEFFNECKAPA-VHFVAKDYGHMDMLDDD 246 (313)
T ss_pred cCCCCeEEEecCCCcccccccccccCCC-CC-CH--HHHHHhcCCCe-eeeeecCCCcceeecCC
Confidence 478999999998653 2222 21 00 13344444555 78889999999775554
No 119
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=82.22 E-value=1.2 Score=33.26 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=45.2
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCC-ceeEEeCC----CCCChhhhCH-HHHHHHHHHHH
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGL-QEVIVMEG----VAHFINQEKA-DEVSSHIYDFI 170 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~----~GH~~~~e~p-~~v~~~i~~fl 170 (173)
.+++|+.++...+|+..|+.+. +.+.+..+|. .+...++. .||+--.-+| |.+-+.+++|+
T Consensus 214 aVrtPi~~~~~~DD~w~P~As~------d~f~~~y~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 214 AVRTPITFSRALDDPWAPPASR------DAFASFYRNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HhcCceeeeccCCCCcCCHHHH------HHHHHhhhcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 6899999999999999987654 6677777764 13333433 5999876666 88888888775
No 120
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=82.15 E-value=1.3 Score=33.35 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=27.8
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhh
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQ 156 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~ 156 (173)
..+.+|.+...+++|..+..... .+.+...-++.+++..++|++|-+.+
T Consensus 192 k~l~iP~iaF~A~~D~WV~q~eV-----~~~~~~~~s~~~klysl~Gs~HdL~e 240 (294)
T PF02273_consen 192 KRLSIPFIAFTANDDDWVKQSEV-----EELLDNINSNKCKLYSLPGSSHDLGE 240 (294)
T ss_dssp TT--S-EEEEEETT-TTS-HHHH-----HHHHTT-TT--EEEEEETT-SS-TTS
T ss_pred hhCCCCEEEEEeCCCccccHHHH-----HHHHHhcCCCceeEEEecCccchhhh
Confidence 46899999999999988765443 13334344454488999999998753
No 121
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=82.13 E-value=2.1 Score=35.50 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=44.7
Q ss_pred ceEEEeeCCCcCCCCcchhhHhhhcccccc-------CCCCceeEEeCCCCCChhh--hCHHHHHHHHHHHHHh
Q 030710 108 PVKFMVGDLDITYHIPGIREYIQNGGFKKD-------VPGLQEVIVMEGVAHFINQ--EKADEVSSHIYDFIKQ 172 (173)
Q Consensus 108 P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~GH~~~~--e~p~~v~~~i~~fl~~ 172 (173)
-.++.+|-.|+++++....+|. +.+.+. +.+.+++..+||.||..-- -.+-.+...|.+|+++
T Consensus 355 KLI~~HG~aD~~I~p~~ti~YY--~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 355 KLILYHGWADPLIPPQGTIDYY--ERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred eEEEEecCCCCccCCCcHHHHH--HHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 4589999999999887665564 333222 3444599999999999732 3455677788899874
No 122
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=81.99 E-value=3.3 Score=29.80 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=37.0
Q ss_pred cCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHH
Q 030710 105 IKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFI 170 (173)
Q Consensus 105 i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl 170 (173)
-..+++++.++.|.+++... ..+...+. ...+.+|++|-.. .=++....|.+|+
T Consensus 133 ~~~~~lvll~~~DEvLd~~~---------a~~~~~~~-~~~i~~ggdH~f~--~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 133 NPERYLVLLQTGDEVLDYRE---------AVAKYRGC-AQIIEEGGDHSFQ--DFEEYLPQIIAFL 186 (187)
T ss_pred CCccEEEEEecCCcccCHHH---------HHHHhcCc-eEEEEeCCCCCCc--cHHHHHHHHHHhh
Confidence 35689999999999987532 23333455 5556678899874 3556666777776
No 123
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=80.78 E-value=1.5 Score=34.81 Aligned_cols=56 Identities=20% Similarity=0.097 Sum_probs=41.5
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCC-ceeEEeCCCCCChhhhCHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGL-QEVIVMEGVAHFINQEKADEV 162 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~GH~~~~e~p~~v 162 (173)
..++++|++++.|..|.+.+...- ....-.++++. +-...++++.|+-..|-.++.
T Consensus 247 l~~v~~P~~~~a~s~D~~aP~~~~-----~~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 247 LVKVTDPVLLAAGSADGFAPPVTE-----QIRPFGYLPGALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred ceeeecceeeecccccccCCcccc-----cccccccCCcchhheeecCCCccccccccCccc
Confidence 347999999999999987654322 24555666764 357788999999988877763
No 124
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=76.81 E-value=1.2 Score=31.98 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChh
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN 155 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~ 155 (173)
-.|++++.|+.|..++ ....+. +.+++.--++ +++++++++|-..
T Consensus 166 ~Pp~~i~~g~~D~l~~--~~~~~~--~~L~~~gv~v-~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 166 LPPTLIIHGEDDVLVD--DSLRFA--EKLKKAGVDV-ELHVYPGMPHGFF 210 (211)
T ss_dssp CHEEEEEEETTSTTHH--HHHHHH--HHHHHTT-EE-EEEEETTEETTGG
T ss_pred CCCeeeeccccccchH--HHHHHH--HHHHHCCCCE-EEEEECCCeEEee
Confidence 3489999999998764 222332 6666654456 8999999999654
No 125
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=76.57 E-value=7.4 Score=31.65 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=36.1
Q ss_pred ceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChh-----hhCHHHHHHHHHHHH
Q 030710 108 PVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN-----QEKADEVSSHIYDFI 170 (173)
Q Consensus 108 P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~-----~e~p~~v~~~i~~fl 170 (173)
-+|+|.|++||..-.. =.+.+-..|. .+.+.||++|... .+.-++..+.|.+|.
T Consensus 353 rmlFVYG~nDPW~A~~--------f~l~~g~~ds-~v~~~PggnHga~I~~L~~~~r~~a~a~l~~Wa 411 (448)
T PF05576_consen 353 RMLFVYGENDPWSAEP--------FRLGKGKRDS-YVFTAPGGNHGARIAGLPEAERAEATARLRRWA 411 (448)
T ss_pred eEEEEeCCCCCcccCc--------cccCCCCcce-EEEEcCCCcccccccCCCHHHHHHHHHHHHHHc
Confidence 4799999999875321 1222333466 7888899999853 444556777777774
No 126
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=73.93 E-value=6.9 Score=32.79 Aligned_cols=59 Identities=12% Similarity=-0.048 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHhccCC-CcchhhhhhhcccCccccCCCCCCCcCCceEEEeeCCCcCCCCcch
Q 030710 60 PSWLSEEDVNYYASKFSQKG-FTGGLNYYRCLDLNWELLAPWTGAQIKIPVKFMVGDLDITYHIPGI 125 (173)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~yr~~~~~~~~~~~~~~~~i~vP~l~i~G~~D~~~~~~~~ 125 (173)
.-.++.+++...++.+-..+ +..+.- + .......++++|++|+.++.|..|-+.|++.+
T Consensus 257 ~~~l~~~ei~~Iv~nLFvgNrL~~g~~--~-----~~~G~~~DLr~Ir~Piivfas~gDnITPP~Qa 316 (581)
T PF11339_consen 257 FYDLNGEEILWIVENLFVGNRLAKGEF--R-----VSDGRRVDLRNIRSPIIVFASYGDNITPPQQA 316 (581)
T ss_pred ccCCCHHHHHHHHHHHhccchhccCce--e-----ccCCcEeehhhCCCCEEEEeccCCCCCChhHh
Confidence 44577777777777664432 322110 0 00112234678999999999999999988664
No 127
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=71.47 E-value=14 Score=26.70 Aligned_cols=52 Identities=29% Similarity=0.565 Sum_probs=32.7
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
..|++.|.|+++.-..-+. +. .++. +++.+|| ||..-.+ -+.+++.|.+-++
T Consensus 139 ~~~v~CiyG~~E~d~~cp~---------l~--~~~~-~~i~lpG-gHHfd~d-y~~La~~Il~~l~ 190 (192)
T PF06057_consen 139 PAPVQCIYGEDEDDSLCPS---------LR--QPGV-EVIALPG-GHHFDGD-YDALAKRILDALK 190 (192)
T ss_pred CCeEEEEEcCCCCCCcCcc---------cc--CCCc-EEEEcCC-CcCCCCC-HHHHHHHHHHHHh
Confidence 3599999998764321111 11 1567 8899987 8877655 5566666665554
No 128
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=70.50 E-value=20 Score=29.16 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=42.8
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEE---eCCCCCCh---hhhCHHHHHHHHHHHHHh
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIV---MEGVAHFI---NQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~GH~~---~~e~p~~v~~~i~~fl~~ 172 (173)
...+++|+.+.+|++|....++.. +.+....++. .... +++=.|.= -.+.+++|++.|.+.++.
T Consensus 328 l~~i~~P~~l~~g~~D~l~~~~DV------~~~~~~~~~~-~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~ 397 (403)
T KOG2624|consen 328 LTNIKVPTALYYGDNDWLADPEDV------LILLLVLPNS-VIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRL 397 (403)
T ss_pred ccccccCEEEEecCCcccCCHHHH------HHHHHhcccc-cccccccCCCccceeeeeccCcHHHHHHHHHHHHHh
Confidence 457899999999999988776554 3344444443 2222 44445541 256799999999988763
No 129
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=64.83 E-value=6.8 Score=31.47 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=23.5
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKA 159 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p 159 (173)
..+++|+|+|..+.= ........ + ......-++. ....+.|++|.-+-+-|
T Consensus 271 ~~i~~P~L~InSe~f--~~~~~~~~-~--~~~~~~~~~~-~~~ti~gt~H~s~sD~~ 321 (379)
T PF03403_consen 271 SKIPQPLLFINSESF--QWWENIFR-M--KKVISNNKES-RMLTIKGTAHLSFSDFP 321 (379)
T ss_dssp GG--S-EEEEEETTT----HHHHHH-H--HTT--TTS-E-EEEEETT--GGGGSGGG
T ss_pred cCCCCCEEEEECccc--CChhhHHH-H--HHHhccCCCc-EEEEECCCcCCCcchhh
Confidence 368999999988752 11111100 1 2222233455 78889999997665543
No 130
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=62.25 E-value=15 Score=28.30 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhC
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEK 158 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~ 158 (173)
--|++++.|+.|+..+. .. .| .+.+++.--.. ++..++++.|..+.-.
T Consensus 245 lPP~~i~~a~~D~l~~~-~~-~~--a~~L~~agv~~-~~~~~~g~~H~f~~~~ 292 (312)
T COG0657 245 LPPTLIQTAEFDPLRDE-GE-AY--AERLRAAGVPV-ELRVYPGMIHGFDLLT 292 (312)
T ss_pred CCCEEEEecCCCcchhH-HH-HH--HHHHHHcCCeE-EEEEeCCcceeccccC
Confidence 35899999999998873 21 22 25555554456 8899999999764333
No 131
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=60.46 E-value=9.6 Score=30.15 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=40.1
Q ss_pred ceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCH-----HHHHHHHHHHHHh
Q 030710 108 PVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKA-----DEVSSHIYDFIKQ 172 (173)
Q Consensus 108 P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p-----~~v~~~i~~fl~~ 172 (173)
|++++.++.|..... +. .| .+++++.--.. ++...++++|-.+.=.| .++.+.|.+|+.+
T Consensus 270 ~tlv~~ag~D~L~D~-~~-~Y--~~~Lkk~Gv~v-~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~ 334 (336)
T KOG1515|consen 270 PTLVVVAGYDVLRDE-GL-AY--AEKLKKAGVEV-TLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKS 334 (336)
T ss_pred ceEEEEeCchhhhhh-hH-HH--HHHHHHcCCeE-EEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhh
Confidence 499999999987653 32 22 35665543344 56678999998765444 4677777888764
No 132
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=59.28 E-value=11 Score=28.64 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=42.1
Q ss_pred CcCCceEEEeeC------CCcCCCCcchhhHhhhccccccCCC---CceeEEeCC--CCCChhhhCHHHHHHHHHHHHH
Q 030710 104 QIKIPVKFMVGD------LDITYHIPGIREYIQNGGFKKDVPG---LQEVIVMEG--VAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 104 ~i~vP~l~i~G~------~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~--~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
+-++.+|-|.|. .|..+|..++ ..++..+.+ .++..+|.| +.|--..|+| +|.+.|.+||=
T Consensus 182 p~~i~VLnI~G~~~~g~~sDG~V~~~Ss------~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~-~V~~~I~~FLw 253 (255)
T PF06028_consen 182 PKNIQVLNIYGDLEDGSNSDGIVPNASS------LSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENP-QVDKLIIQFLW 253 (255)
T ss_dssp TTT-EEEEEEEESBTTCSBTSSSBHHHH------CTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCH-HHHHHHHHHHC
T ss_pred CCCeEEEEEecccCCCCCCCeEEeHHHH------HHHHHHhhcccCceEEEEEECCCCccccCCCCH-HHHHHHHHHhc
Confidence 346789999998 6777775443 555555543 236667755 6899877876 67788999983
No 133
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=59.17 E-value=21 Score=33.20 Aligned_cols=57 Identities=9% Similarity=0.102 Sum_probs=37.6
Q ss_pred CCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCH--HHHHHHHH
Q 030710 103 AQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKA--DEVSSHIY 167 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p--~~v~~~i~ 167 (173)
..+..|++++.|..|........ ..+.++..++ ++..++ +||+.+...+ +.+.+.|.
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~------~~W~~~~~~~-~~~~v~-g~H~~~~~~~~~~~~~~~l~ 1291 (1296)
T PRK10252 1233 VPFDGKATLFVAERTLQEGMSPE------QAWSPWIAEL-DVYRQD-CAHVDIISPEAFEKIGPILR 1291 (1296)
T ss_pred CcccCceEEEEcCCCCcccCCcc------cchhhhcCCC-EEEECC-CCHHHHCCcHHHHHHHHHHH
Confidence 45778999999988865443222 5566666667 888884 6999987554 33444443
No 134
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=58.07 E-value=4.2 Score=30.00 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=39.2
Q ss_pred CCCcCCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCH----HHHHHHHHHHH
Q 030710 102 GAQIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKA----DEVSSHIYDFI 170 (173)
Q Consensus 102 ~~~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p----~~v~~~i~~fl 170 (173)
...+++|+|++.|++|.---.+. .+.+......+ ++..+++.+|+--.|.- ..+...++.|+
T Consensus 203 ~~~v~~~ilVv~~~~espklieQ------nrdf~~q~~~a-~~~~f~n~~hy~I~~~~~~~~s~~~~~~~~~~ 268 (270)
T KOG4627|consen 203 YTDVTVWILVVAAEHESPKLIEQ------NRDFADQLRKA-SFTLFKNYDHYDIIEETAIDDSDVSRFLRNIE 268 (270)
T ss_pred hcCceeeeeEeeecccCcHHHHh------hhhHHHHhhhc-ceeecCCcchhhHHHHhccccchHHHHHHHHh
Confidence 34689999999999984311122 13444444556 88999999999766542 23444454443
No 135
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=55.46 E-value=14 Score=27.08 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=35.4
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHH
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVS 163 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~ 163 (173)
..|.+..+|+.|+++|.....+. .+.+....... +.+.+++.+|..--+.=+++.
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s--~~~l~~~~~~~-~f~~y~g~~h~~~~~e~~~~~ 198 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKS--AQFLKSLGVRV-TFKPYPGLGHSTSPQELDDLK 198 (206)
T ss_pred cchhheecccCCceeehHHHHHH--HHHHHHcCCce-eeeecCCccccccHHHHHHHH
Confidence 67899999999999986432111 13333333335 888999999997544333333
No 136
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=51.66 E-value=29 Score=26.92 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=41.5
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhh-hc-----------------cc-cccCCC-CceeEEeCCCCCChhhhCHHHHH
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQ-NG-----------------GF-KKDVPG-LQEVIVMEGVAHFINQEKADEVS 163 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~-~~-----------------~~-~~~~~~-~~~~~~i~~~GH~~~~e~p~~v~ 163 (173)
+-++|++++.|.+|-.+..+...++.. -+ .+ .+...+ -...+.+..-|||.|=.+|+-++
T Consensus 210 ~~~ikvli~ygg~DhLIEeeI~~E~a~~f~~l~Hf~~~~~~seee~~kI~~~f~~~~~~~sv~f~~dgHf~qK~~A~lIA 289 (297)
T PF06342_consen 210 KKPIKVLIAYGGKDHLIEEEISFEFAMKFKGLDHFNIEKEISEEEKPKILKSFASGQKGASVFFAKDGHFQQKFRADLIA 289 (297)
T ss_pred cCCCcEEEEEcCcchhhHHHHHHHHHHHhCCccceeeecCCChhHHHHHHHHHhcCCceeEEEEecCChHHhHHHHHHHH
Confidence 335899999999998764433322210 00 01 111111 11345666779999999999999
Q ss_pred HHHHHHH
Q 030710 164 SHIYDFI 170 (173)
Q Consensus 164 ~~i~~fl 170 (173)
+.+..-+
T Consensus 290 ~~i~~mf 296 (297)
T PF06342_consen 290 EAIKKMF 296 (297)
T ss_pred HHHHHhh
Confidence 9987755
No 137
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=49.63 E-value=38 Score=28.29 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=36.8
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccC--CCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDV--PGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
+..++...|=.|..++.-... .. .+.+.... ++. ....+=.+||+++.++|+.....+..|+.
T Consensus 425 ~Lkw~~~~g~~d~~~~~~~~~-~t-~e~~~~~~s~~n~-~~~r~y~aGHMvp~d~P~~~~~~~~~~~~ 489 (498)
T COG2939 425 KLKWLGASGYFDASTPFFWSR-LT-LEEMGGYKSYRNL-TFLRIYEAGHMVPYDRPESSLEMVNLWIN 489 (498)
T ss_pred cceEeeecchhhhcCCCcccc-cc-hhhcccccccCCc-eEEEEecCcceeecCChHHHHHHHHHHHh
Confidence 345666666666555532210 00 12222211 244 44444468999999999999999888864
No 138
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=47.29 E-value=39 Score=29.92 Aligned_cols=64 Identities=20% Similarity=0.318 Sum_probs=41.9
Q ss_pred CcCCce-EEEeeCCCcCCCCcchhhHhhhcccc-ccCCCCceeEEeCCCCCChhhhCH-HHHHHHHHHHHH
Q 030710 104 QIKIPV-KFMVGDLDITYHIPGIREYIQNGGFK-KDVPGLQEVIVMEGVAHFINQEKA-DEVSSHIYDFIK 171 (173)
Q Consensus 104 ~i~vP~-l~i~G~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~GH~~~~e~p-~~v~~~i~~fl~ 171 (173)
.++.|. |+|+|+.|.-+.......++ +.+. +-++ . +..+.|+.+|.+-.-.+ ..+...+..|+.
T Consensus 679 ~~~~~~~LliHGt~DdnVh~q~s~~~~--~aL~~~gv~-~-~~~vypde~H~is~~~~~~~~~~~~~~~~~ 745 (755)
T KOG2100|consen 679 NIKTPKLLLIHGTEDDNVHFQQSAILI--KALQNAGVP-F-RLLVYPDENHGISYVEVISHLYEKLDRFLR 745 (755)
T ss_pred hhccCCEEEEEcCCcCCcCHHHHHHHH--HHHHHCCCc-e-EEEEeCCCCcccccccchHHHHHHHHHHHH
Confidence 566777 99999999877654332221 2333 2334 6 99999999999865432 456666667765
No 139
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=46.41 E-value=35 Score=19.73 Aligned_cols=35 Identities=14% Similarity=0.404 Sum_probs=27.3
Q ss_pred ccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 136 KDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 136 ~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
+..|+. .+..+ ++-+++-.|.++++.+.|.+|-++
T Consensus 23 e~~PDT-vItL~-~G~k~vV~Es~~eVi~ki~~y~~~ 57 (60)
T PF06289_consen 23 EETPDT-VITLT-NGKKYVVKESVEEVIEKIIEYRRK 57 (60)
T ss_pred EEcCCe-EEEEe-CCCEEEEECCHHHHHHHHHHHHHh
Confidence 345775 55655 558888999999999999999764
No 140
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=43.46 E-value=51 Score=19.26 Aligned_cols=36 Identities=14% Similarity=0.398 Sum_probs=29.4
Q ss_pred cccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHh
Q 030710 135 KKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 135 ~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~ 172 (173)
-+.+|+. .+..+ ++.-++-.|.-|+|++-|.+|-++
T Consensus 22 ie~~PDt-tItLi-nGkkyvVkEsveEVi~kI~~y~rk 57 (67)
T COG1582 22 IEAFPDT-TITLI-NGKKYVVKESVEEVINKIIEYRRK 57 (67)
T ss_pred hhccCCc-EEEEE-cCcEEEEcccHHHHHHHHHHHHHH
Confidence 4567888 88888 558899999999999999998653
No 141
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=39.07 E-value=32 Score=19.63 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=11.4
Q ss_pred hhCHHHHHHHHHHHHHhC
Q 030710 156 QEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 156 ~e~p~~v~~~i~~fl~~~ 173 (173)
-|-|+.+.+.+.+||+.|
T Consensus 4 aeiPe~L~~~m~~fie~h 21 (57)
T PF10929_consen 4 AEIPEDLHQAMKDFIETH 21 (57)
T ss_pred ccccHHHHHHHHHHHHcC
Confidence 355666667777766654
No 142
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=38.35 E-value=24 Score=25.41 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=15.8
Q ss_pred CCceEEEeeCCCcCCCCcch
Q 030710 106 KIPVKFMVGDLDITYHIPGI 125 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~ 125 (173)
..|+++++|++|.+++....
T Consensus 168 ~p~~~i~hG~~D~vVp~~~~ 187 (212)
T TIGR01840 168 TPIMSVVHGDADYTVLPGNA 187 (212)
T ss_pred CCeEEEEEcCCCceeCcchH
Confidence 34567899999999987665
No 143
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=36.49 E-value=41 Score=25.33 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=14.2
Q ss_pred CCcCCceEEEeeCCCcCCC
Q 030710 103 AQIKIPVKFMVGDLDITYH 121 (173)
Q Consensus 103 ~~i~vP~l~i~G~~D~~~~ 121 (173)
.++++|+|++.|-.|..+.
T Consensus 225 ~~i~vP~l~v~Gw~D~~~~ 243 (272)
T PF02129_consen 225 DKIDVPVLIVGGWYDTLFL 243 (272)
T ss_dssp GG--SEEEEEEETTCSSTS
T ss_pred hhCCCCEEEecccCCcccc
Confidence 5799999999999995544
No 144
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=35.84 E-value=40 Score=27.52 Aligned_cols=62 Identities=16% Similarity=0.312 Sum_probs=32.3
Q ss_pred CcCCceEEEeeCCCcCCCCcchhhHhhhccccccC-C-CC-ceeEEeCCCCC---ChhhhCHHHHHHHHHHHHHh
Q 030710 104 QIKIPVKFMVGDLDITYHIPGIREYIQNGGFKKDV-P-GL-QEVIVMEGVAH---FINQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~i~~~GH---~~~~e~p~~v~~~i~~fl~~ 172 (173)
.-..||+++.|.-|..-+ +.. ..+.+++ + |. .=++-+||.|+ |...+..+.+-+.|++||..
T Consensus 187 ~~p~P~VIv~gGlDs~qe-D~~------~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~ 254 (411)
T PF06500_consen 187 EKPYPTVIVCGGLDSLQE-DLY------RLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLAS 254 (411)
T ss_dssp SS-EEEEEEE--TTS-GG-GGH------HHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCcchhHH-HHH------HHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhc
Confidence 346799999999997653 221 2233333 2 33 13445678776 44455566888899999864
No 145
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=33.89 E-value=58 Score=15.23 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHh
Q 030710 160 DEVSSHIYDFIKQ 172 (173)
Q Consensus 160 ~~v~~~i~~fl~~ 172 (173)
+++|..|.++|.+
T Consensus 1 ~~Ln~lI~~YL~~ 13 (27)
T PF08513_consen 1 EELNQLIYDYLVE 13 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5788999998865
No 146
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=32.34 E-value=47 Score=23.47 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=25.6
Q ss_pred cccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHHhC
Q 030710 133 GFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIKQF 173 (173)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~~~ 173 (173)
..+..-|.. ++.++ |||-.. +|+.|+..|++|+++|
T Consensus 104 lF~tlePki-dlLIv-G~Gd~~---~p~~v~~~V~~F~k~~ 139 (196)
T KOG3363|consen 104 LFQTLEPKI-DLLIV-GCGDKK---HPDKVRPSVRQFVKSH 139 (196)
T ss_pred HhhhcCCCc-cEEEE-ecCCcC---CchhcCHHHHHHHHHh
Confidence 344455666 77777 888765 4778888888988765
No 147
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=31.64 E-value=48 Score=26.01 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=42.6
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCCCC-ceeEEeCCCCCChhhhC---HHHHHHHHHHHHHhC
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGL-QEVIVMEGVAHFINQEK---ADEVSSHIYDFIKQF 173 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~GH~~~~e~---p~~v~~~i~~fl~~~ 173 (173)
+|-.+-|-|+.|.+...... +. +..+...+|.. ++...=+++||+--..- -+++.-.|++|+.+|
T Consensus 339 ~~aL~tvEGEnDDIsgvGQT-kA--A~~LC~nIpe~mk~hy~qp~vGHYGVFnGsrfr~eIvPri~dFI~~~ 407 (415)
T COG4553 339 NVALFTVEGENDDISGVGQT-KA--AHDLCSNIPEDMKQHYMQPDVGHYGVFNGSRFREEIVPRIRDFIRRY 407 (415)
T ss_pred ceeEEEeecccccccccchh-HH--HHHHHhcChHHHHHHhcCCCCCccceeccchHHHHHHHHHHHHHHHh
Confidence 46678899999977543221 11 24555556643 24456689999975443 577888899998764
No 148
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=27.93 E-value=31 Score=20.53 Aligned_cols=19 Identities=16% Similarity=0.330 Sum_probs=10.2
Q ss_pred eeEEeCCCCCChhhhCHHH
Q 030710 143 EVIVMEGVAHFINQEKADE 161 (173)
Q Consensus 143 ~~~~i~~~GH~~~~e~p~~ 161 (173)
-+.--.|.|||+|...-+.
T Consensus 30 MI~cs~~~GHWvhaqCm~L 48 (78)
T PF13341_consen 30 MIFCSRGGGHWVHAQCMDL 48 (78)
T ss_dssp EEEE-STT-EEEETGGGT-
T ss_pred EEEEeCCCceEeEeecccc
Confidence 3444457899998665443
No 149
>PRK04940 hypothetical protein; Provisional
Probab=27.63 E-value=1.5e+02 Score=21.30 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=35.8
Q ss_pred cCCce--EEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHHHH
Q 030710 105 IKIPV--KFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDFIK 171 (173)
Q Consensus 105 i~vP~--l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~fl~ 171 (173)
++.|- +++-.+.|.++.... ..+...+.+++.+.+|+.|-. +.=++....|.+|+.
T Consensus 121 ~~~p~r~~vllq~gDEvLDyr~---------a~~~y~~~y~~~v~~GGdH~f--~~fe~~l~~I~~F~~ 178 (180)
T PRK04940 121 EKNRDRCLVILSRNDEVLDSQR---------TAEELHPYYEIVWDEEQTHKF--KNISPHLQRIKAFKT 178 (180)
T ss_pred hcCcccEEEEEeCCCcccCHHH---------HHHHhccCceEEEECCCCCCC--CCHHHHHHHHHHHHh
Confidence 44454 899999999887532 233334433677888877765 333556677778875
No 150
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=25.50 E-value=88 Score=25.42 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=21.2
Q ss_pred ceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCCh
Q 030710 108 PVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFI 154 (173)
Q Consensus 108 P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~ 154 (173)
=++++.|+.||..... .....-+.. ...+|+|++|..
T Consensus 378 nviFtNG~~DPW~~lg---------v~~~~~~~~-~~~~I~g~~Hc~ 414 (434)
T PF05577_consen 378 NVIFTNGELDPWRALG---------VTSDSSDSV-PAIVIPGGAHCS 414 (434)
T ss_dssp SEEEEEETT-CCGGGS-----------S-SSSSE-EEEEETT--TTG
T ss_pred eEEeeCCCCCCccccc---------CCCCCCCCc-ccEEECCCeeec
Confidence 5799999999875421 112222334 567899999985
No 151
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=24.98 E-value=89 Score=14.53 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHHh
Q 030710 158 KADEVSSHIYDFIKQ 172 (173)
Q Consensus 158 ~p~~v~~~i~~fl~~ 172 (173)
+..+++..|.+||.+
T Consensus 2 ~~~~l~~lI~~yL~~ 16 (34)
T smart00667 2 SRSELNRLILEYLLR 16 (34)
T ss_pred cHHHHHHHHHHHHHH
Confidence 356788889988864
No 152
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=1e+02 Score=24.70 Aligned_cols=64 Identities=9% Similarity=0.146 Sum_probs=46.1
Q ss_pred CCceEEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChh-hhCHHHHHHHHHHHHHh
Q 030710 106 KIPVKFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN-QEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 106 ~vP~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~-~e~p~~v~~~i~~fl~~ 172 (173)
..+.+.+.+..|.+++.....+++ +...+.--++ +.+.+.++-|..| ...|....+...+|++.
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~--~~~~~~g~~v-~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~ 289 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFI--ALRREKGVNV-KSVKFKDSEHVAHFRSFPKTYLKKCSEFLRS 289 (350)
T ss_pred cccceeecCCccccccHHHHHHHH--HHHHhcCceE-EEeeccCccceeeeccCcHHHHHHHHHHHHh
Confidence 568889999999999876654442 2223333345 6667778889887 56699999999999875
No 153
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=24.64 E-value=55 Score=27.77 Aligned_cols=19 Identities=16% Similarity=0.468 Sum_probs=16.2
Q ss_pred hhhhCHHHHHHHHHHHHHh
Q 030710 154 INQEKADEVSSHIYDFIKQ 172 (173)
Q Consensus 154 ~~~e~p~~v~~~i~~fl~~ 172 (173)
+..|+|++|+++|+.||.+
T Consensus 522 la~e~PeevA~ilr~Wl~e 540 (542)
T PRK06007 522 LAKEDPEEVAQVLRTWLSE 540 (542)
T ss_pred HHHhCHHHHHHHHHHHhcC
Confidence 3468899999999999975
No 154
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=24.56 E-value=41 Score=26.71 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=28.3
Q ss_pred ccccccCCCCceeEEeCCCCCChhhhCHHHHHHHHHHH
Q 030710 132 GGFKKDVPGLQEVIVMEGVAHFINQEKADEVSSHIYDF 169 (173)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~GH~~~~e~p~~v~~~i~~f 169 (173)
+...+...|+ ....|..+||.++-++|+.+...++-+
T Consensus 374 ~gy~ktyknl-~f~wilraghmvp~Dnp~~a~hmlr~v 410 (414)
T KOG1283|consen 374 EGYEKTYKNL-SFFWILRAGHMVPADNPAAASHMLRHV 410 (414)
T ss_pred chhhhhhccc-eeEEeecccCcccCCCHHHHhhheeec
Confidence 3344455677 778888999999999999988776554
No 155
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=23.14 E-value=1.3e+02 Score=22.93 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=32.1
Q ss_pred CcCCceEEEeeCCCc---------CCCCcchhhHhhhccccccCCCCceeEEeCCCCCChhhhCH
Q 030710 104 QIKIPVKFMVGDLDI---------TYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFINQEKA 159 (173)
Q Consensus 104 ~i~vP~l~i~G~~D~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~~e~p 159 (173)
..++|+++|..+-+. +.|. .. +| .+-+.+..+.. ...++.+.||+=.++..
T Consensus 152 ~~~~P~lviGtGLg~~~~~~~~~~CaP~-g~-n~--~~Ff~~~~~p~-~~~v~~~~GH~d~LDd~ 211 (259)
T PF12740_consen 152 DFSMPALVIGTGLGGEPRNPLFPPCAPA-GV-NY--REFFDECKPPS-WHFVAKDYGHMDFLDDD 211 (259)
T ss_pred CCCCCeEEEecccCcccccccCCCCCCC-CC-CH--HHHHHhcCCCE-EEEEeCCCCchHhhcCC
Confidence 356999999877663 4443 22 11 23344444455 67778899999877765
No 156
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=22.81 E-value=86 Score=27.16 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=30.0
Q ss_pred Cc-CCceEEEeeCCCcCCCCcch-hhHhhhcc-ccccCCCCceeEEeCCCCCCh
Q 030710 104 QI-KIPVKFMVGDLDITYHIPGI-REYIQNGG-FKKDVPGLQEVIVMEGVAHFI 154 (173)
Q Consensus 104 ~i-~vP~l~i~G~~D~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~~~GH~~ 154 (173)
.+ ..|+++++|+.|..+|.... ..|..... .+.....+ +...|.++-|+=
T Consensus 552 ~L~GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~l-rYyeV~naqHfD 604 (690)
T PF10605_consen 552 NLHGKPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRL-RYYEVTNAQHFD 604 (690)
T ss_pred CcCCCceEEEecccceecccCCCchHHHHHhhhhcccccce-eEEEecCCeech
Confidence 45 68999999999988876433 12210011 11112345 777888887773
No 157
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=22.78 E-value=1.2e+02 Score=21.26 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=25.2
Q ss_pred CCCceeEEeCCCCCChhhhCH-HHHHHHHHHHHH
Q 030710 139 PGLQEVIVMEGVAHFINQEKA-DEVSSHIYDFIK 171 (173)
Q Consensus 139 ~~~~~~~~i~~~GH~~~~e~p-~~v~~~i~~fl~ 171 (173)
.+. ...++||..|+.....+ +.+.+.+++|.+
T Consensus 65 ~~y-dal~ipGG~~~~~~~~~~~~~~~~v~~~~~ 97 (188)
T COG0693 65 ADY-DALVIPGGDHGPEYLRPDPDLLAFVRDFYA 97 (188)
T ss_pred hHC-CEEEECCCccchhhccCcHHHHHHHHHHHH
Confidence 356 88999984499998888 778888877765
No 158
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=22.39 E-value=38 Score=24.96 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=24.0
Q ss_pred EEEeeCCCcCCCCcchhhHhhhccccccCCCCceeEEeCCCCCChh
Q 030710 110 KFMVGDLDITYHIPGIREYIQNGGFKKDVPGLQEVIVMEGVAHFIN 155 (173)
Q Consensus 110 l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GH~~~ 155 (173)
.+|.|++|.++|+.... ..+... . .++.+ +++|++.
T Consensus 169 ~aiIg~~D~IFpp~nQ~-----~~W~~~---~-~~~~~-~~~Hy~F 204 (213)
T PF04301_consen 169 KAIIGKKDRIFPPENQK-----RAWQGR---C-TIVEI-DAPHYPF 204 (213)
T ss_pred EEEEcCCCEEeCHHHHH-----HHHhCc---C-cEEEe-cCCCcCc
Confidence 58899999999975541 233322 3 55566 5799984
Done!