Query 030711
Match_columns 173
No_of_seqs 126 out of 1290
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:26:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03671 Ap4A_hydrolase_plant_l 99.9 7E-25 1.5E-29 151.3 14.0 141 8-152 2-144 (147)
2 PRK00714 RNA pyrophosphohydrol 99.9 1.8E-24 3.8E-29 150.5 15.0 152 1-158 1-154 (156)
3 PRK09438 nudB dihydroneopterin 99.9 9.8E-23 2.1E-27 140.7 14.0 138 5-157 3-144 (148)
4 cd03672 Dcp2p mRNA decapping e 99.9 1.5E-21 3.2E-26 134.2 12.3 130 11-161 3-140 (145)
5 cd04679 Nudix_Hydrolase_20 Mem 99.9 2.4E-21 5.2E-26 130.1 10.1 114 9-141 2-117 (125)
6 cd03424 ADPRase_NUDT5 ADP-ribo 99.9 1.1E-20 2.4E-25 128.7 12.9 116 9-144 2-120 (137)
7 cd04696 Nudix_Hydrolase_37 Mem 99.9 7.4E-21 1.6E-25 127.7 11.5 114 10-141 3-116 (125)
8 cd03673 Ap6A_hydrolase Diadeno 99.9 8.8E-21 1.9E-25 128.1 11.9 124 10-154 2-128 (131)
9 PLN02325 nudix hydrolase 99.9 1.4E-20 3.1E-25 129.2 12.8 124 1-141 1-127 (144)
10 cd04681 Nudix_Hydrolase_22 Mem 99.9 8.1E-21 1.7E-25 128.3 11.2 109 11-137 3-113 (130)
11 cd04670 Nudix_Hydrolase_12 Mem 99.9 1.8E-20 3.8E-25 126.2 12.2 112 9-140 2-114 (127)
12 cd04700 DR1025_like DR1025 fro 99.9 1.3E-20 2.7E-25 129.3 11.6 116 8-143 12-129 (142)
13 PRK15472 nucleoside triphospha 99.8 2.3E-20 5E-25 127.8 12.5 56 9-64 3-62 (141)
14 cd03674 Nudix_Hydrolase_1 Memb 99.8 2.9E-20 6.2E-25 127.0 12.8 56 9-65 2-58 (138)
15 cd03430 GDPMH GDP-mannose glyc 99.8 1.3E-20 2.8E-25 129.5 11.1 118 9-139 12-132 (144)
16 PRK15434 GDP-mannose mannosyl 99.8 1.1E-20 2.4E-25 131.3 10.6 118 9-139 17-137 (159)
17 PF00293 NUDIX: NUDIX domain; 99.8 1.2E-20 2.7E-25 127.5 10.1 118 8-142 1-122 (134)
18 cd04678 Nudix_Hydrolase_19 Mem 99.8 2.6E-20 5.7E-25 125.7 10.9 114 9-139 2-117 (129)
19 cd04680 Nudix_Hydrolase_21 Mem 99.8 1.9E-20 4.2E-25 124.6 10.1 109 11-141 2-110 (120)
20 cd04692 Nudix_Hydrolase_33 Mem 99.8 3.3E-20 7.2E-25 127.5 11.3 120 8-142 1-130 (144)
21 cd02885 IPP_Isomerase Isopente 99.8 6.2E-20 1.3E-24 128.9 12.5 118 8-143 29-152 (165)
22 cd03428 Ap4A_hydrolase_human_l 99.8 1.1E-19 2.4E-24 122.7 12.7 122 9-153 2-126 (130)
23 cd04664 Nudix_Hydrolase_7 Memb 99.8 8E-20 1.7E-24 123.3 11.8 113 10-141 2-120 (129)
24 cd04682 Nudix_Hydrolase_23 Mem 99.8 9E-20 2E-24 121.9 11.1 109 11-140 2-115 (122)
25 cd04677 Nudix_Hydrolase_18 Mem 99.8 3.7E-20 7.9E-25 125.3 9.2 57 8-65 6-62 (132)
26 cd04695 Nudix_Hydrolase_36 Mem 99.8 2.2E-19 4.8E-24 121.5 12.7 105 18-141 11-116 (131)
27 cd03429 NADH_pyrophosphatase N 99.8 1.2E-19 2.5E-24 122.9 11.2 105 11-139 2-107 (131)
28 cd03675 Nudix_Hydrolase_2 Cont 99.8 2.8E-19 6E-24 121.4 13.1 120 15-153 5-125 (134)
29 cd04684 Nudix_Hydrolase_25 Con 99.8 1.3E-19 2.8E-24 121.8 11.2 116 11-141 2-119 (128)
30 cd04693 Nudix_Hydrolase_34 Mem 99.8 1.1E-19 2.4E-24 122.3 10.6 112 11-144 2-118 (127)
31 PRK15393 NUDIX hydrolase YfcD; 99.8 2.8E-19 6.1E-24 127.1 12.5 112 8-142 36-152 (180)
32 PRK03759 isopentenyl-diphospha 99.8 2.6E-19 5.7E-24 127.8 12.3 121 6-145 31-158 (184)
33 cd04697 Nudix_Hydrolase_38 Mem 99.8 1.2E-19 2.6E-24 122.0 10.0 110 10-142 1-115 (126)
34 cd04691 Nudix_Hydrolase_32 Mem 99.8 1.6E-19 3.5E-24 119.9 10.3 104 12-141 3-110 (117)
35 cd04683 Nudix_Hydrolase_24 Mem 99.8 2E-19 4.4E-24 119.8 10.4 111 11-142 2-117 (120)
36 cd04673 Nudix_Hydrolase_15 Mem 99.8 3E-19 6.4E-24 119.2 10.9 113 11-141 2-116 (122)
37 cd04676 Nudix_Hydrolase_17 Mem 99.8 3.6E-19 7.8E-24 119.7 11.1 115 9-141 2-119 (129)
38 cd04689 Nudix_Hydrolase_30 Mem 99.8 4.5E-19 9.7E-24 119.0 11.2 54 10-65 2-55 (125)
39 cd03426 CoAse Coenzyme A pyrop 99.8 2.9E-19 6.2E-24 124.5 10.4 109 10-139 3-118 (157)
40 cd04666 Nudix_Hydrolase_9 Memb 99.8 5.9E-19 1.3E-23 117.9 11.5 112 12-141 3-117 (122)
41 cd04694 Nudix_Hydrolase_35 Mem 99.8 1.4E-18 3E-23 119.0 12.6 123 11-141 3-133 (143)
42 cd04671 Nudix_Hydrolase_13 Mem 99.8 4.6E-19 9.9E-24 118.7 10.0 108 11-140 2-111 (123)
43 cd04687 Nudix_Hydrolase_28 Mem 99.8 9.8E-19 2.1E-23 117.8 11.7 122 9-141 1-123 (128)
44 cd04685 Nudix_Hydrolase_26 Mem 99.8 5E-19 1.1E-23 119.9 10.2 118 10-139 1-123 (133)
45 cd04669 Nudix_Hydrolase_11 Mem 99.8 3.5E-19 7.5E-24 119.0 9.3 111 11-141 2-116 (121)
46 COG1051 ADP-ribose pyrophospha 99.8 9.1E-19 2E-23 120.2 11.5 114 9-142 10-125 (145)
47 cd04688 Nudix_Hydrolase_29 Mem 99.8 6.9E-19 1.5E-23 118.3 10.6 116 11-140 3-119 (126)
48 cd03427 MTH1 MutT homolog-1 (M 99.8 5.5E-19 1.2E-23 120.3 10.2 107 14-141 5-113 (137)
49 cd04672 Nudix_Hydrolase_14 Mem 99.8 5.6E-19 1.2E-23 118.2 10.0 113 10-142 3-115 (123)
50 TIGR02150 IPP_isom_1 isopenten 99.8 7.9E-19 1.7E-23 122.4 10.4 117 6-144 24-147 (158)
51 cd04686 Nudix_Hydrolase_27 Mem 99.8 1.3E-18 2.9E-23 117.7 11.1 115 11-139 2-119 (131)
52 cd04667 Nudix_Hydrolase_10 Mem 99.8 1E-18 2.2E-23 115.2 9.7 100 15-142 5-104 (112)
53 PRK11762 nudE adenosine nucleo 99.8 5E-18 1.1E-22 121.3 13.9 120 11-151 49-171 (185)
54 cd04690 Nudix_Hydrolase_31 Mem 99.8 1E-18 2.2E-23 116.0 9.6 54 11-65 2-55 (118)
55 PRK10546 pyrimidine (deoxy)nuc 99.8 2.6E-18 5.7E-23 116.7 11.2 54 11-64 5-61 (135)
56 PRK00241 nudC NADH pyrophospha 99.8 1.2E-18 2.7E-23 129.7 10.3 118 10-154 133-251 (256)
57 cd04661 MRP_L46 Mitochondrial 99.8 5.4E-18 1.2E-22 114.9 10.8 109 19-141 11-122 (132)
58 cd04699 Nudix_Hydrolase_39 Mem 99.8 7.4E-18 1.6E-22 113.4 10.1 54 11-64 3-60 (129)
59 PRK10776 nucleoside triphospha 99.8 1E-17 2.2E-22 112.7 10.5 117 12-155 7-126 (129)
60 cd04511 Nudix_Hydrolase_4 Memb 99.8 8.2E-18 1.8E-22 113.7 9.5 103 9-137 13-117 (130)
61 PRK10729 nudF ADP-ribose pyrop 99.8 2.9E-17 6.3E-22 118.5 12.6 120 10-146 50-178 (202)
62 TIGR00052 nudix-type nucleosid 99.7 2.3E-17 4.9E-22 117.6 11.2 120 9-146 44-172 (185)
63 cd03676 Nudix_hydrolase_3 Memb 99.7 1E-16 2.2E-21 114.1 12.5 123 6-143 29-162 (180)
64 TIGR00586 mutt mutator mutT pr 99.7 5.8E-17 1.3E-21 109.0 10.5 56 9-64 4-62 (128)
65 KOG2839 Diadenosine and diphos 99.7 6.3E-17 1.4E-21 107.5 10.4 119 6-141 6-127 (145)
66 PRK05379 bifunctional nicotina 99.7 1.2E-16 2.6E-21 123.9 13.2 115 10-139 204-322 (340)
67 cd03425 MutT_pyrophosphohydrol 99.7 8.6E-17 1.9E-21 107.2 10.2 106 13-142 5-113 (124)
68 PRK15009 GDP-mannose pyrophosp 99.7 4.1E-16 8.9E-21 111.5 13.2 124 9-151 45-178 (191)
69 cd02883 Nudix_Hydrolase Nudix 99.7 7.3E-16 1.6E-20 102.1 10.6 111 11-140 2-113 (123)
70 PRK10707 putative NUDIX hydrol 99.7 6.9E-16 1.5E-20 110.3 11.0 112 8-140 29-147 (190)
71 cd04662 Nudix_Hydrolase_5 Memb 99.7 9.1E-16 2E-20 101.9 10.1 54 11-64 2-64 (126)
72 PLN02552 isopentenyl-diphospha 99.6 4.8E-15 1E-19 109.4 13.3 142 6-155 53-223 (247)
73 COG2816 NPY1 NTP pyrophosphohy 99.6 3.7E-16 7.9E-21 115.5 5.1 108 9-141 144-252 (279)
74 cd04665 Nudix_Hydrolase_8 Memb 99.6 5.8E-15 1.3E-19 97.8 9.3 52 12-66 3-54 (118)
75 TIGR02705 nudix_YtkD nucleosid 99.6 1.8E-14 3.9E-19 99.4 12.0 105 11-143 26-131 (156)
76 PLN02791 Nudix hydrolase homol 99.6 1.8E-14 3.9E-19 120.3 14.2 123 6-142 29-161 (770)
77 PRK08999 hypothetical protein; 99.6 8.4E-15 1.8E-19 112.7 11.2 56 9-64 5-63 (312)
78 cd04674 Nudix_Hydrolase_16 Mem 99.6 1.9E-14 4E-19 95.2 9.6 49 15-64 10-60 (118)
79 PLN02709 nudix hydrolase 99.6 3.6E-14 7.8E-19 102.8 11.0 97 21-139 51-155 (222)
80 cd04663 Nudix_Hydrolase_6 Memb 99.6 4.4E-14 9.6E-19 94.2 10.2 51 12-64 3-55 (126)
81 cd03670 ADPRase_NUDT9 ADP-ribo 99.6 4.2E-14 9.1E-19 100.2 10.2 41 22-63 50-90 (186)
82 KOG3084 NADH pyrophosphatase I 99.5 2.7E-15 5.8E-20 111.5 2.6 111 8-141 186-300 (345)
83 PLN03143 nudix hydrolase; Prov 99.5 4.6E-13 9.9E-18 100.9 12.3 126 11-143 130-269 (291)
84 COG0494 MutT NTP pyrophosphohy 99.4 3.8E-12 8.2E-17 86.8 11.4 55 11-65 13-69 (161)
85 COG1443 Idi Isopentenyldiphosp 99.4 1.1E-12 2.5E-17 89.9 7.8 119 8-143 32-157 (185)
86 KOG0648 Predicted NUDIX hydrol 99.4 1.7E-12 3.7E-17 96.6 7.5 121 5-144 111-236 (295)
87 KOG3041 Nucleoside diphosphate 99.3 3.9E-11 8.4E-16 83.8 11.6 117 11-143 75-198 (225)
88 COG4119 Predicted NTP pyrophos 99.3 5.3E-11 1.2E-15 77.4 9.7 130 10-157 4-153 (161)
89 KOG3069 Peroxisomal NUDIX hydr 99.2 4.4E-10 9.6E-15 80.8 10.4 110 10-139 44-163 (246)
90 cd03431 DNA_Glycosylase_C DNA 99.1 3.8E-09 8.2E-14 69.6 11.7 51 12-62 5-58 (118)
91 PLN02839 nudix hydrolase 98.7 1.6E-07 3.5E-12 72.6 10.7 106 21-142 218-330 (372)
92 KOG0142 Isopentenyl pyrophosph 98.7 2.3E-08 5E-13 70.3 5.4 136 7-156 50-203 (225)
93 PF14815 NUDIX_4: NUDIX domain 98.2 2.5E-06 5.4E-11 56.0 5.1 102 14-142 2-106 (114)
94 KOG2937 Decapping enzyme compl 97.9 6E-06 1.3E-10 62.5 2.7 102 15-137 88-190 (348)
95 COG4112 Predicted phosphoester 97.8 0.00031 6.8E-09 48.1 9.3 113 8-139 59-187 (203)
96 KOG4195 Transient receptor pot 97.8 2.4E-05 5.2E-10 56.1 3.8 39 22-61 140-178 (275)
97 KOG1689 mRNA cleavage factor I 97.7 0.002 4.3E-08 44.6 11.6 134 7-152 67-208 (221)
98 KOG4432 Uncharacterized NUDIX 97.5 0.00074 1.6E-08 50.8 8.3 97 34-144 285-381 (405)
99 PF13869 NUDIX_2: Nucleotide h 97.5 0.00087 1.9E-08 47.5 8.0 123 7-140 41-171 (188)
100 KOG4313 Thiamine pyrophosphoki 96.9 0.0046 1E-07 45.5 6.7 106 22-142 149-261 (306)
101 KOG4432 Uncharacterized NUDIX 96.8 0.003 6.4E-08 47.7 5.0 56 10-65 27-111 (405)
102 KOG4548 Mitochondrial ribosoma 96.6 0.039 8.4E-07 40.8 9.4 42 22-63 140-183 (263)
103 PRK10880 adenine DNA glycosyla 96.5 0.04 8.6E-07 43.3 9.9 45 12-63 233-280 (350)
104 PRK13910 DNA glycosylase MutY; 91.8 1.9 4E-05 33.2 8.5 27 127-156 256-282 (289)
105 PF14443 DBC1: DBC1 81.4 3.1 6.7E-05 27.7 3.8 32 32-63 23-57 (126)
106 PF03487 IL13: Interleukin-13; 77.5 2.7 5.8E-05 21.8 2.1 23 38-60 14-36 (43)
107 COG1194 MutY A/G-specific DNA 72.4 9.7 0.00021 30.0 4.9 36 9-44 235-273 (342)
108 KOG4485 Uncharacterized conser 71.7 30 0.00065 28.5 7.5 121 7-156 50-208 (724)
109 PF12860 PAS_7: PAS fold 69.5 2.7 5.9E-05 26.9 1.2 43 11-54 5-47 (115)
110 KOG1794 N-Acetylglucosamine ki 67.0 6.9 0.00015 30.2 3.0 49 14-65 17-65 (336)
111 KOG2937 Decapping enzyme compl 64.5 2.8 6.1E-05 32.6 0.6 43 22-64 253-295 (348)
112 PF07026 DUF1317: Protein of u 62.8 16 0.00035 20.8 3.3 20 34-56 23-42 (60)
113 PF09505 Dimeth_Pyl: Dimethyla 40.1 19 0.00042 28.2 1.6 27 38-64 405-431 (466)
114 PF10820 DUF2543: Protein of u 35.9 36 0.00079 20.1 2.0 33 34-66 35-67 (81)
115 PF14044 NETI: NETI protein 32.8 38 0.00082 19.2 1.6 20 42-63 4-23 (57)
116 PRK07198 hypothetical protein; 31.2 95 0.0021 25.2 4.2 45 17-63 158-202 (418)
117 PF08967 DUF1884: Domain of un 27.0 18 0.00038 22.2 -0.3 22 48-71 13-34 (85)
118 COG0554 GlpK Glycerol kinase [ 26.9 47 0.001 27.6 1.9 54 11-66 16-74 (499)
119 COG1707 ACT domain-containing 26.9 23 0.00051 25.0 0.2 15 52-66 159-173 (218)
120 PF09752 DUF2048: Uncharacteri 26.9 1.3E+02 0.0028 24.0 4.2 56 3-58 282-347 (348)
121 COG0828 RpsU Ribosomal protein 26.6 59 0.0013 19.2 1.8 27 37-63 1-29 (67)
122 PF11212 DUF2999: Protein of u 26.5 60 0.0013 19.4 1.8 14 51-64 58-71 (82)
123 KOG3904 Predicted hydrolase RP 26.0 30 0.00065 25.1 0.6 18 46-63 23-40 (209)
124 PHA02754 hypothetical protein; 25.9 1.3E+02 0.0029 17.1 3.1 29 132-163 3-31 (67)
125 KOG0648 Predicted NUDIX hydrol 25.4 35 0.00077 26.3 0.9 29 34-63 56-84 (295)
126 COG1069 AraB Ribulose kinase [ 24.1 4.2E+02 0.0091 22.6 6.8 59 11-70 14-77 (544)
127 COG4111 Uncharacterized conser 23.5 3.4E+02 0.0074 20.7 9.3 45 18-67 33-79 (322)
No 1
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.93 E-value=7e-25 Score=151.31 Aligned_cols=141 Identities=56% Similarity=1.160 Sum_probs=99.4
Q ss_pred ccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhh--hhhccCCcccccCCccccc
Q 030711 8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE--IIAEVPNWLTYDFPPAVKT 85 (173)
Q Consensus 8 ~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~~~~ 85 (173)
+|.+|++++++.++++||++|...++.|.+|||++++||++.+||+||+.||||+.+.. ++........+.+++....
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~ 81 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKL 81 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhc
Confidence 78899999999999999999998668999999999999999999999999999998432 3333333333444332211
Q ss_pred ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHH
Q 030711 86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVM 152 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~ 152 (173)
+.+.+.+.++..++|++.+.......++.. .+++|+.+++|++++++.+++.++..+++..++
T Consensus 82 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~ 144 (147)
T cd03671 82 ---KIWGGRYRGQEQKWFLFRFTGDDSEIDLNA-PEHPEFDEWRWVPLEELPDLIVPFKRPVYEAVL 144 (147)
T ss_pred ---cccCCcCCCEEEEEEEEEecCCCccccCCC-CCCCCEeeEEeCCHHHHHHhchhhhHHHHHHHH
Confidence 112222344566788888876333333321 124689999999999999998776655554443
No 2
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.93 E-value=1.8e-24 Score=150.52 Aligned_cols=152 Identities=43% Similarity=0.841 Sum_probs=107.0
Q ss_pred CCCCCCCccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhh--hhccCCccccc
Q 030711 1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYD 78 (173)
Q Consensus 1 m~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~ 78 (173)
|++-. .+|.+|+++|++.++++||++|...++.|.+|||++++||++.+||.||+.||||+.+..+ +........+.
T Consensus 1 ~~~~~-~~~~~v~~~i~~~~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~ 79 (156)
T PRK00714 1 MIDDD-GYRPNVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYD 79 (156)
T ss_pred CCCCC-CCCCeEEEEEEecCCEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEec
Confidence 44443 4899999999999999999999876689999999999999999999999999999985322 22222233444
Q ss_pred CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhh
Q 030711 79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPY 158 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 158 (173)
++...... ....+.+...++|++..........+.. .+.+|+.+++|++++++.+++.+.+..++..+++.|...
T Consensus 80 ~~~~~~~~----~~~~~~~~~~~~fl~~~~~~~~~~~l~~-~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~~~~ 154 (156)
T PRK00714 80 LPKRLVRR----SKGVYRGQKQKWFLLRLTGDDSEINLNT-TSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEFARL 154 (156)
T ss_pred CcHHHhhc----cCCcccCcEEEEEEEEecCCCccccCCC-CCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 44332111 1123334456788888764433333221 133689999999999999988776667777777766554
No 3
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.90 E-value=9.8e-23 Score=140.72 Aligned_cols=138 Identities=22% Similarity=0.413 Sum_probs=88.3
Q ss_pred CCCccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch--hhhhhccCC--cccccCC
Q 030711 5 PSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS--AEIIAEVPN--WLTYDFP 80 (173)
Q Consensus 5 ~~~~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~--~~~~~~~~~--~~~~~~~ 80 (173)
+...+.+|++++++.++++||++|...++.|.+|||++++|||+.+||+||+.||||+.+ ..... +.. ...+.+.
T Consensus 3 ~~~~~~~v~~vi~~~~~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~ 81 (148)
T PRK09438 3 PYKRPVSVLVVIYTPDLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTL-IDCQRSIEYEIF 81 (148)
T ss_pred CccCceEEEEEEEeCCCeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceee-cccccccccccc
Confidence 334778888899999999999998776789999999999999999999999999999985 22111 110 0011111
Q ss_pred cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhh
Q 030711 81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP 157 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~ 157 (173)
..... ...........++|.+..... ... ..+|+.++.|++++++.++... +....+++.+..
T Consensus 82 ~~~~~----~~~~~~~~~~~~~f~~~~~~~-~~~------~~~E~~~~~W~~~~e~~~~~~~---~~~~~~l~~~~~ 144 (148)
T PRK09438 82 PHWRH----RYAPGVTRNTEHWFCLALPHE-RPV------VLTEHLAYQWLDAREAAALTKS---WSNAEAIEQLVI 144 (148)
T ss_pred hhhhh----ccccccCCceeEEEEEecCCC-Ccc------ccCcccceeeCCHHHHHHHhcC---hhHHHHHHHHHH
Confidence 00000 000111122345666654321 111 2248899999999999998653 555555555443
No 4
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.88 E-value=1.5e-21 Score=134.16 Aligned_cols=130 Identities=18% Similarity=0.389 Sum_probs=85.5
Q ss_pred eeEEEEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711 11 NVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 89 (173)
Q Consensus 11 ~v~~~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (173)
.+++++++.+ +++||+++.. ++.|+||||++++|||+.+||+||++||||+.+..... ...+....+
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~~~~~~~---------- 70 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDDYIELII---------- 70 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cceeeeccc----------
Confidence 5667788765 6999999875 45899999999999999999999999999998543221 111000110
Q ss_pred ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc-------CchHHHHHHHHHhhhhhh
Q 030711 90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY-------KRPTYEEVMRTFRPYLNE 161 (173)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~-------~~~~~~~~~~~l~~~~~~ 161 (173)
.....++|++........... .+.+|+..++|++++++.++.... ...++...+..+.+|++.
T Consensus 71 ------~~~~~~~f~~~~~~~~~~~~~---~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (145)
T cd03672 71 ------RGQNVKLYIVPGVPEDTPFEP---KTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIPFIKPLKKWINR 140 (145)
T ss_pred ------CCcEEEEEEEecCCCCcccCc---CChhhhheEEEeeHHHhhhhhhhccccccccceEEEhHHHHHHHHHHHH
Confidence 111234444433222111111 123589999999999999986553 335667777777777765
No 5
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=2.4e-21 Score=130.10 Aligned_cols=114 Identities=19% Similarity=0.312 Sum_probs=77.1
Q ss_pred cceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 86 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 86 (173)
|.+|+++|++.++++||++|... ++.|.+|||++++||++.+||+||++||||+.+... ..+.. ..+.+.....
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~-~~~~~-~~~~~~~~~~-- 77 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST-RLLCV-VDHIIEEPPQ-- 77 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc-eEEEE-EeecccCCCC--
Confidence 56788899999899999998753 479999999999999999999999999999985322 22111 1111111000
Q ss_pred cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
.....+|++...... ... .+.+|+.+++|++++++.+.+.
T Consensus 78 ----------~~~~~~f~~~~~~~~--~~~---~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 78 ----------HWVAPVYLAENFSGE--PRL---MEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred ----------eEEEEEEEEeecCCc--ccc---CCCccccEEEEeCHHHCCchhH
Confidence 112345555544322 111 1225889999999999987654
No 6
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.86 E-value=1.1e-20 Score=128.72 Aligned_cols=116 Identities=24% Similarity=0.262 Sum_probs=81.7
Q ss_pred cceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT 85 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (173)
+.+|.++++++++++||+++.+ .++.|.+|||+++.||++.+||+||++||||+.+..+..... +.+...
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~----~~~~~~--- 74 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGS----FYPSPG--- 74 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEee----EecCCc---
Confidence 5688889999999999998765 246899999999999999999999999999999643322211 111110
Q ss_pred ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711 86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK 144 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~ 144 (173)
.......+|++.......... .+++|+..++|++++++.+++..+.
T Consensus 75 ---------~~~~~~~~~~~~~~~~~~~~~----~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 75 ---------FSDERIHLFLAEDLSPGEEGL----LDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred ---------ccCccEEEEEEEcccccccCC----CCCCCeeEEEEecHHHHHHHHHcCC
Confidence 011124566666554322122 2336899999999999999987654
No 7
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=7.4e-21 Score=127.71 Aligned_cols=114 Identities=26% Similarity=0.450 Sum_probs=73.9
Q ss_pred ceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711 10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 89 (173)
Q Consensus 10 ~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (173)
.+|+++|++.++++||++|..+.|.|.+|||++++|||+.+||+||++||||+++........ ..+.+......
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~--~~~~~~~~~~~---- 76 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMV--QEAIFSEEFHK---- 76 (125)
T ss_pred cEEEEEEECCCCCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEE--EEEeccCCCCC----
Confidence 456778888889999998876678999999999999999999999999999998533221110 11111111000
Q ss_pred ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
. .......|.+.... ..... .+|+.+++|++++++.++..
T Consensus 77 ----~-~~~~~~~~~~~~~~--~~~~~-----~~e~~~~~W~~~~el~~~~~ 116 (125)
T cd04696 77 ----P-AHFVLFDFFARTDG--TEVTP-----NEEIVEWEWVTPEEALDYPL 116 (125)
T ss_pred ----c-cEEEEEEEEEEecC--CcccC-----CcccceeEEECHHHHhcCCC
Confidence 0 01112233333332 12221 14889999999999998744
No 8
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.86 E-value=8.8e-21 Score=128.06 Aligned_cols=124 Identities=27% Similarity=0.529 Sum_probs=81.1
Q ss_pred ceeEEEEEecC---CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711 10 PNVGVCLINSD---SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 86 (173)
Q Consensus 10 ~~v~~~i~~~~---~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 86 (173)
.++++++++.+ ++|||++|.+ .+.|.+|||++++|||+.+||.||++||||+.+..+.. +.. ..+.++..
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~-~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~-~~~-~~~~~~~~---- 74 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPR-GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDP-LGT-IRYWFSSS---- 74 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCC-CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecce-EEE-EEEeccCC----
Confidence 46677777765 8999999886 47899999999999999999999999999998533221 111 11222211
Q ss_pred cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHH
Q 030711 87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRT 154 (173)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~ 154 (173)
.........+|.+...... ... .+..|+..+.|++++++.+++. .+....+++.
T Consensus 75 ------~~~~~~~~~~~~~~~~~~~--~~~---~~~~E~~~~~W~~~~el~~~~~---~~~~~~~l~~ 128 (131)
T cd03673 75 ------GKRVHKTVHWWLMRALGGE--FTP---QPDEEVDEVRWLPPDEARDRLS---YPNDRELLRA 128 (131)
T ss_pred ------CCCcceEEEEEEEEEcCCC--ccc---CCCCcEEEEEEcCHHHHHHHcC---CHhHHHHHHH
Confidence 0011223455555554332 221 1235889999999999998764 3555555543
No 9
>PLN02325 nudix hydrolase
Probab=99.86 E-value=1.4e-20 Score=129.24 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=77.0
Q ss_pred CCCCCCCccceeEEEEEecCCcEEEEEecCCC--CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcc-cc
Q 030711 1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWL-TY 77 (173)
Q Consensus 1 m~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~--~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~-~~ 77 (173)
|+.-.+..+.++.+++++ +++|||++|...+ |.|.+|||+++.|||+.+||+||++||||+.+.... .+.... .+
T Consensus 1 ~~~~~~~p~~~v~~vi~~-~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~-~l~~~~~~~ 78 (144)
T PLN02325 1 METGEPIPRVAVVVFLLK-GNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIE-LLTVTNNVF 78 (144)
T ss_pred CCCCCCCCeEEEEEEEEc-CCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceE-EEEEeccee
Confidence 444444456667766665 4799999988643 689999999999999999999999999999853321 111100 01
Q ss_pred cCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 78 DFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
...... .+....+|.+.......... ..+++++.+++|+++++++....
T Consensus 79 ~~~~~~------------~~~i~~~f~~~~~~~~~~~~---~~e~~e~~~~~W~~~d~Lp~~~~ 127 (144)
T PLN02325 79 LEEPKP------------SHYVTVFMRAVLADPSQVPQ---NLEPEKCYGWDWYEWDNLPEPLF 127 (144)
T ss_pred ecCCCC------------cEEEEEEEEEEECCCCCCCC---cCCchhcCceEEEChHHCChhhh
Confidence 101000 01123444444433221111 12345678899999999997544
No 10
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=8.1e-21 Score=128.29 Aligned_cols=109 Identities=28% Similarity=0.487 Sum_probs=73.0
Q ss_pred eeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 88 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
+|.++|++.++++||++|... +|.|.+|||++++|||+.+||.||++||||+++..+.........+.+....
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~----- 77 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGME----- 77 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCce-----
Confidence 577788899999999998763 4799999999999999999999999999999854332211111111111100
Q ss_pred cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHH
Q 030711 89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV 137 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~ 137 (173)
......+|++.+.... .. .+.+|+..++|++++++.
T Consensus 78 -------~~~~~~~~~~~~~~~~--~~----~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 78 -------YDTLDLFFVCQVDDKP--IV----KAPDDVAELKWVVPQDIE 113 (130)
T ss_pred -------eEEEEEEEEEEeCCCC--Cc----CChHHhheeEEecHHHCC
Confidence 0111235555554322 11 122588999999999985
No 11
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.8e-20 Score=126.19 Aligned_cols=112 Identities=29% Similarity=0.439 Sum_probs=75.2
Q ss_pred cceeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 87 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (173)
+.+|+++|++.+++|||++|+.. ++.|.+|||++++|||+.+||+||++||||+... ....+.....+.+. .
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~-~~~~~~~~~~~~~~---~--- 74 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTE-FVSVVGFRHAHPGA---F--- 74 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcc-eeEEEEEEecCCCC---c---
Confidence 46788889999999999987653 6899999999999999999999999999999842 22211111111100 0
Q ss_pred ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711 88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 140 (173)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 140 (173)
.....+|++.+........ .+++|+..++|++++++.+..
T Consensus 75 ---------~~~~~~~~~~~~~~~~~~~----~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04670 75 ---------GKSDLYFICRLKPLSFDIN----FDTSEIAAAKWMPLEEYISQP 114 (127)
T ss_pred ---------CceeEEEEEEEccCcCcCC----CChhhhheeEEEcHHHHhcch
Confidence 0112445555543222222 233688899999999997753
No 12
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.85 E-value=1.3e-20 Score=129.29 Aligned_cols=116 Identities=24% Similarity=0.324 Sum_probs=80.1
Q ss_pred ccceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711 8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT 85 (173)
Q Consensus 8 ~~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (173)
+..+|+++|++.++++||+++... ++.|++|||++++|||+.+||+||++||||+++... ..+.. +...++...
T Consensus 12 ~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~~~~-~~~~~~~~~-- 87 (142)
T cd04700 12 EARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV-KFLGT-YLGRFDDGV-- 87 (142)
T ss_pred eeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc-EEEEE-EEEEcCCCc--
Confidence 667888899998899999987653 478999999999999999999999999999985332 22211 111121110
Q ss_pred ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711 86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY 143 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 143 (173)
....++|++.......... ..+|+.+++|++++++.+++...
T Consensus 88 -----------~~~~~~f~~~~~~~~~~~~-----~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 88 -----------LVLRHVWLAEPEGQTLAPK-----FTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred -----------EEEEEEEEEEecCCccccC-----CCCCEEEEEEECHHHhhhccccc
Confidence 0123556666543221211 12588999999999999987653
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.85 E-value=2.3e-20 Score=127.84 Aligned_cols=56 Identities=32% Similarity=0.548 Sum_probs=48.8
Q ss_pred cceeEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711 9 RPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~ 64 (173)
.+.+++++++.++++||++|.. ++|.|++|||++++|||+.+||+||++||||+.+
T Consensus 3 ~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (141)
T PRK15472 3 QRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 62 (141)
T ss_pred ceeEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCce
Confidence 3566677777789999999865 4589999999999999999999999999999984
No 14
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.85 E-value=2.9e-20 Score=126.96 Aligned_cols=56 Identities=34% Similarity=0.541 Sum_probs=50.5
Q ss_pred cceeEEEEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711 9 RPNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (173)
Q Consensus 9 ~~~v~~~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~ 65 (173)
|.+|++++++++ +++||++|.. .+.|.+|||++++||++.+||.||++||||+.+.
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 58 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELL 58 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcc
Confidence 567888899887 9999999876 5789999999999999999999999999999843
No 15
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.85 E-value=1.3e-20 Score=129.49 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=74.8
Q ss_pred cceeEEEEEecCCcEEEEEecC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhh-hccCCcccccCCccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII-AEVPNWLTYDFPPAVKT 85 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~ 85 (173)
+.+|+++|++.++++||++|.. .+|.|.+|||++++|||+.+||+||++||||+.+.... ..+.. ..+.+......
T Consensus 12 ~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~-~~~~~~~~~~~ 90 (144)
T cd03430 12 LVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGV-FEHFYDDNFFG 90 (144)
T ss_pred eEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEE-EEEEecccccc
Confidence 4577778889899999999875 35899999999999999999999999999999853210 11111 11111110000
Q ss_pred ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
. ..-.+....+|.+..... .... .++|+.+++|++++++.+.
T Consensus 91 ~------~~~~~~~~~~~~~~~~~~--~~~~----~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 91 D------DFSTHYVVLGYVLKLSSN--ELLL----PDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred C------CCccEEEEEEEEEEEcCC--cccC----CchhccEeEEecHHHHhcC
Confidence 0 000011223444444332 2221 3368899999999999974
No 16
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.85 E-value=1.1e-20 Score=131.25 Aligned_cols=118 Identities=15% Similarity=0.290 Sum_probs=74.3
Q ss_pred cceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 86 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 86 (173)
..+|.++|++++++|||++|... +|.|.+|||++++|||+.+||+||++||||+.+......+-....+.+......
T Consensus 17 ~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~- 95 (159)
T PRK15434 17 LISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSG- 95 (159)
T ss_pred eEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCC-
Confidence 45777788888899999999753 479999999999999999999999999999984211111101011111110000
Q ss_pred cccccCCcc-ccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 87 VNRLWGGEW-HGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
..+ ......+|.+.... ....+ +..|+.+++|++++++.+.
T Consensus 96 ------~~~~~~~i~~~f~~~~~~--g~~~~----~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 96 ------TDFTTHYVVLGFRLRVAE--EDLLL----PDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred ------CccceEEEEEEEEEEecC--CcccC----ChHHeeEEEEEeHHHhhhc
Confidence 000 00122344444432 23332 2258999999999999875
No 17
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.85 E-value=1.2e-20 Score=127.53 Aligned_cols=118 Identities=36% Similarity=0.672 Sum_probs=84.1
Q ss_pred ccceeEEEEEecCCcEEEEEecCCC----CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccc
Q 030711 8 YRPNVGVCLINSDSQIFVASRLNVP----GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAV 83 (173)
Q Consensus 8 ~~~~v~~~i~~~~~~vLl~~r~~~~----~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 83 (173)
+|++|++++++.++++||++|++.+ +.|.+|||++++|||+.+||+||+.||||+.......... ..+......
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~--~~~~~~~~~ 78 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGL--FSYPSPSGD 78 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEE--EEEEETTTE
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccccccee--eeecccCCC
Confidence 4789999999999999999999854 7999999999999999999999999999999522111111 111111111
Q ss_pred ccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 84 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
. .+...++|.+............. .|+..++|++++++.++...
T Consensus 79 ~-----------~~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~W~~~~el~~~~~~ 122 (134)
T PF00293_consen 79 P-----------EGEIVIFFIAELPSEQSEIQPQD----EEISEVKWVPPDELLELLLN 122 (134)
T ss_dssp S-----------SEEEEEEEEEEEEEEESECHTTT----TTEEEEEEEEHHHHHHHHHT
T ss_pred c-----------ccEEEEEEEEEEeCCccccCCCC----ccEEEEEEEEHHHhhhchhC
Confidence 0 12235666666665443333322 38999999999999998764
No 18
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=2.6e-20 Score=125.65 Aligned_cols=114 Identities=25% Similarity=0.385 Sum_probs=78.7
Q ss_pred cceeEEEEEecCCcEEEEEecC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 86 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 86 (173)
+.+|.++|++.++++||++|.. ..+.|.+|||++++|||+.+||.||++||||+.+..+ ..+..+... ++..
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~-~~~~~~~~~-~~~~---- 75 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENV-QFLTVTNDV-FEEE---- 75 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccce-EEEEEEeEE-eCCC----
Confidence 5678889999999999999985 4589999999999999999999999999999985332 222111111 1110
Q ss_pred cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
.......+|.+.........+. .+++|+.+++|++++++.++
T Consensus 76 --------~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 76 --------GKHYVTIFVKAEVDDGEAEPNK---MEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred --------CcEEEEEEEEEEeCCCCcccCC---CCCceeCceEEeCHHHCCCc
Confidence 0111345666666543222221 13467889999999999985
No 19
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=1.9e-20 Score=124.64 Aligned_cols=109 Identities=22% Similarity=0.323 Sum_probs=73.5
Q ss_pred eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 90 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (173)
+|.+++++.++++||++|.. .+.|.+|||++++|||+.+||+||++||||+.+......+.. +.+....
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~-~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~---~~~~~~~------- 70 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTY-GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGV---YYHSASG------- 70 (120)
T ss_pred ceEEEEECCCCeEEEEEECC-CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEE---EecCCCC-------
Confidence 57788899999999999876 448999999999999999999999999999995412222211 1111100
Q ss_pred cCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 91 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
.....++|.+..... ... .+.+|+..++|++++++++.+.
T Consensus 71 -----~~~~~~~f~~~~~~~--~~~----~~~~E~~~~~w~~~~~l~~~~~ 110 (120)
T cd04680 71 -----SWDHVIVFRARADTQ--PVI----RPSHEISEARFFPPDALPEPTT 110 (120)
T ss_pred -----CceEEEEEEecccCC--Ccc----CCcccEEEEEEECHHHCcccCC
Confidence 011223444433322 211 2336889999999999998654
No 20
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=3.3e-20 Score=127.51 Aligned_cols=120 Identities=20% Similarity=0.313 Sum_probs=80.1
Q ss_pred ccceeEEEEEecC---CcEEEEEecC----CCCeEEC-CCcccCCCCCHHHHHHHHHHHHhCCchhh-hhhccCCccccc
Q 030711 8 YRPNVGVCLINSD---SQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAE-IIAEVPNWLTYD 78 (173)
Q Consensus 8 ~~~~v~~~i~~~~---~~vLl~~r~~----~~~~w~l-PgG~ie~gE~~~~aa~RE~~EEtGl~~~~-~~~~~~~~~~~~ 78 (173)
||++|.++|++.+ +++|+++|.. +||.|.+ |||++++|||+.+||+||++||||+.... .+..+.. ..+.
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~-~~~~ 79 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGT-FKIE 79 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeE-EEEe
Confidence 6889999999988 8999999874 5789999 59999999999999999999999997421 1111111 1111
Q ss_pred CC-cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 79 FP-PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
+. .. ........++|++.......... .+++|+..++|++++++.+++..
T Consensus 80 ~~~~~----------~~~~~~~~~~f~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~~ 130 (144)
T cd04692 80 YDHIG----------KLIDREFHHVYLYELKVPLEEFT----LQKEEVAGVVLIPLDEFAELLEE 130 (144)
T ss_pred ccccC----------CCccceEEEEEEEeccCChhhcC----CChhHhheEEEECHHHHHHHHHc
Confidence 11 00 00001123456555543211222 23368999999999999998754
No 21
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.84 E-value=6.2e-20 Score=128.91 Aligned_cols=118 Identities=24% Similarity=0.308 Sum_probs=79.7
Q ss_pred ccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhhhccC-CcccccCCc
Q 030711 8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVP-NWLTYDFPP 81 (173)
Q Consensus 8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~-~~~~~~~~~ 81 (173)
+|.+|+++|++.++++||++|.. +||.|.+| ||++++||++.+||+||++||||+.+........ ..+...+..
T Consensus 29 ~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 108 (165)
T cd02885 29 LHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDG 108 (165)
T ss_pred ceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCC
Confidence 48899999999999999999874 57899997 8999999999999999999999999533222111 101111111
Q ss_pred ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711 82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY 143 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 143 (173)
.. ......++|.+.... ... .+.+|+.+++|++++++.+++...
T Consensus 109 ~~-----------~~~~i~~~f~~~~~~---~~~----~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 109 GL-----------VEHEIDHVFFARADV---TLI----PNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred Cc-----------eeeEEEEEEEEEeCC---CCC----CCccceeEEEEECHHHHHHHHHhC
Confidence 00 001122344444332 111 133688999999999999987654
No 22
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.84 E-value=1.1e-19 Score=122.71 Aligned_cols=122 Identities=25% Similarity=0.427 Sum_probs=79.3
Q ss_pred cceeEEEEEecCC---cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711 9 RPNVGVCLINSDS---QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT 85 (173)
Q Consensus 9 ~~~v~~~i~~~~~---~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (173)
.+++++++++.++ ++||++|+. +.|.+|||++++|||+.+||+||++||||+....+.........+.+...
T Consensus 2 ~~~~g~vi~~~~~~~~~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~--- 76 (130)
T cd03428 2 ERSAGAIIYRRLNNEIEYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVR--- 76 (130)
T ss_pred ceEEEEEEEEecCCCceEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEcccc---
Confidence 3567777776554 689998886 88999999999999999999999999999995443322111111211110
Q ss_pred ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHH
Q 030711 86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMR 153 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~ 153 (173)
.......+|++..... ..... . +|+..+.|++++++.+++.. +.++.+++
T Consensus 77 ---------~~~~~~~~f~~~~~~~-~~~~~----~-~E~~~~~W~~~~e~~~~~~~---~~~~~~~~ 126 (130)
T cd03428 77 ---------GKLKTVTYFLAELRPD-VEVKL----S-EEHQDYRWLPYEEALKLLTY---EDLKAVLD 126 (130)
T ss_pred ---------CcceEEEEEEEEeCCC-Ccccc----c-cceeeEEeecHHHHHHHcCc---hhHHHHHH
Confidence 0112345666665522 12222 1 48889999999999998653 34444443
No 23
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.83 E-value=8e-20 Score=123.29 Aligned_cols=113 Identities=28% Similarity=0.410 Sum_probs=77.5
Q ss_pred ceeEEEEEec--CCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcc---cccCCccc
Q 030711 10 PNVGVCLINS--DSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWL---TYDFPPAV 83 (173)
Q Consensus 10 ~~v~~~i~~~--~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~---~~~~~~~~ 83 (173)
+.|++++++. ++++||++|.+. ++.|.+|||++++||++.+||+||++||||+....... +.... .+.+....
T Consensus 2 ~~~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~ 80 (129)
T cd04664 2 RSVLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTL-LDRGASIAFVEFTDNG 80 (129)
T ss_pred cEEEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEE-EeecccccccccCCCc
Confidence 5678888888 899999999874 78999999999999999999999999999998532211 11111 11111110
Q ss_pred ccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 84 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
.....++|++.+.... . .. .++|+.+++|++++++.+++.
T Consensus 81 ------------~~~~~~~f~~~~~~~~-~-~~----~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 81 ------------RVWTEHPFAFHLPSDA-V-VT----LDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred ------------eEEEEeEEEEEcCCCC-c-cc----CCccccccEecCHHHHHHHHc
Confidence 1112355666555432 1 11 225888999999999998765
No 24
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=9e-20 Score=121.94 Aligned_cols=109 Identities=27% Similarity=0.416 Sum_probs=71.7
Q ss_pred eeEEEEEecCCcEEEEEecC-----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711 11 NVGVCLINSDSQIFVASRLN-----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT 85 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~-----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (173)
.|+++++..++++||++|.. ++|.|.+|||+++.||++.+||+||+.||||+++....... ...+.++.
T Consensus 2 ~v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~--~~~~~~~~---- 75 (122)
T cd04682 2 GVALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPW--FRVYPSAS---- 75 (122)
T ss_pred ceEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccce--eEecccCC----
Confidence 34555555559999999975 35899999999999999999999999999999853211111 11121110
Q ss_pred ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711 86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 140 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 140 (173)
.....++|.+...... .... ..+|+.+++|++++++.+..
T Consensus 76 ----------~~~~~~~f~~~~~~~~-~~~~----~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 76 ----------PPGTEHVFVVPLTARE-DAIL----FGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred ----------CCceEEEEEEEEecCC-Cccc----cCchhheeecccHHHHhhcc
Confidence 0112345555554322 1222 33689999999999998754
No 25
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=3.7e-20 Score=125.32 Aligned_cols=57 Identities=35% Similarity=0.629 Sum_probs=50.9
Q ss_pred ccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711 8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (173)
Q Consensus 8 ~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~ 65 (173)
.+.++++++++.++++||++|... +.|.+|||++++|||+.+||+||++||||++..
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~ 62 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVE 62 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeee
Confidence 566777788888899999998863 789999999999999999999999999999853
No 26
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=2.2e-19 Score=121.49 Aligned_cols=105 Identities=29% Similarity=0.457 Sum_probs=68.7
Q ss_pred ecCCcEEEEEecC-CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCCccc
Q 030711 18 NSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWH 96 (173)
Q Consensus 18 ~~~~~vLl~~r~~-~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (173)
+.++++||++|.. .+|.|.+|||++++|||+.+||+||++||||+++..+... .. ....|..... .
T Consensus 11 ~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~-~~-~~~~~~~~~~-----------~ 77 (131)
T cd04695 11 DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNA-DY-LEQFYEANDN-----------R 77 (131)
T ss_pred CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccc-cc-eeeEeecCCc-----------e
Confidence 4567899999886 4689999999999999999999999999999985433211 10 0111111000 0
Q ss_pred cceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 97 GQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
.....+|++...... .... .+|+.+++|++++++.+++.
T Consensus 78 ~~~~~~f~~~~~~~~-~~~~-----~~E~~~~~W~~~~e~~~~~~ 116 (131)
T cd04695 78 ILMAPVFVGFVPPHQ-EVVL-----NHEHTEYRWCSFAEALELAP 116 (131)
T ss_pred EEEEEEEEEEecCCC-cccc-----CchhcccEecCHHHHHHhcC
Confidence 012334555544321 1111 15889999999999998865
No 27
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.83 E-value=1.2e-19 Score=122.87 Aligned_cols=105 Identities=29% Similarity=0.415 Sum_probs=74.1
Q ss_pred eeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 89 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (173)
+|.+.+++.++++||++|.+. ++.|.+|||++++||++.+||+||++||||+....+..... ..+.++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~--~~~~~~--------- 70 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGS--QPWPFP--------- 70 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEee--cCCCCC---------
Confidence 566677778799999998865 47999999999999999999999999999998643322211 111111
Q ss_pred ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
....++|++.... ..... +.+|+.++.|++++++.++
T Consensus 71 -------~~~~~~f~~~~~~--~~~~~----~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 71 -------SSLMLGFTAEADS--GEIVV----DDDELEDARWFSRDEVRAA 107 (131)
T ss_pred -------ceEEEEEEEEEcC--CcccC----CchhhhccEeecHHHHhhc
Confidence 1123455555543 22222 3368899999999999985
No 28
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.83 E-value=2.8e-19 Score=121.39 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=76.2
Q ss_pred EEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCC
Q 030711 15 CLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGG 93 (173)
Q Consensus 15 ~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (173)
+++..++++||++|.+. .+.|.+|||++++|||+.+||.||++||||+++..... .. ...+..+....
T Consensus 5 ~ii~~~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~-~~~~~~~~~~~--------- 73 (134)
T cd03675 5 AVVERDGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTAL-LG-IYQWTAPDSDT--------- 73 (134)
T ss_pred EEEEECCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceE-EE-EEEeecCCCCe---------
Confidence 44556789999998864 36999999999999999999999999999998532211 11 11122111000
Q ss_pred ccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHH
Q 030711 94 EWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMR 153 (173)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~ 153 (173)
....++|.+.+...... . ...+|+..+.|++++++..+......+.+.+.+.
T Consensus 74 ---~~~~~~f~~~~~~~~~~--~---~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~ 125 (134)
T cd03675 74 ---TYLRFAFAAELLEHLPD--Q---PLDSGIVRAHWLTLEEILALAARLRSPLVLRCIE 125 (134)
T ss_pred ---eEEEEEEEEEECCCCCC--C---CCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHH
Confidence 01234555555433211 1 1225788999999999999875433444444443
No 29
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.82 E-value=1.3e-19 Score=121.82 Aligned_cols=116 Identities=19% Similarity=0.297 Sum_probs=73.9
Q ss_pred eeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 88 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
++.++|++. +++||++|.+. ++.|.+|||++++||++.+||+||++||||+..... ..+... .+.++....
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~-~~~~~~~~~---- 74 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG-RRLGSA-SRYFYSPDG---- 74 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc-eeeeEE-EEEEECCCC----
Confidence 456666765 99999999874 489999999999999999999999999999985332 222211 111111000
Q ss_pred cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
........++|.+.......... ...+|...+.|++++++.+...
T Consensus 75 ----~~~~~~~~~~f~~~~~~~~~~~~----~~~~e~~~~~W~~~~~l~~~~~ 119 (128)
T cd04684 75 ----DYDAHHLCVFYDARVVGGALPVQ----EPGEDSHGAAWLPLDEAIERLL 119 (128)
T ss_pred ----CeeccEEEEEEEEEEecCccccC----CCCCCceeeEEECHHHhhccCC
Confidence 00011223555555554321101 2235778999999999997543
No 30
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.1e-19 Score=122.33 Aligned_cols=112 Identities=24% Similarity=0.372 Sum_probs=74.8
Q ss_pred eeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711 11 NVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT 85 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (173)
+|.+++++.+++|||++|.. .+|.|++| ||++++||++ +||+||++||||+.+...... ....+.+....
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~--~~~~~~~~~~~-- 76 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELR--PLFRYFFEAEG-- 76 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcE--EEEEEEeecCC--
Confidence 57778899999999999874 46899998 8999999999 999999999999985321111 11112221100
Q ss_pred ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711 86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK 144 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~ 144 (173)
...++++.......... .+.+|+.+++|++++++.+++....
T Consensus 77 -------------~~~~~~~~~~~~~~~~~----~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04693 77 -------------FDDYYLFYADVEIGKLI----LQKEEVDEVKFVSKDEIDGLIGHGE 118 (127)
T ss_pred -------------eEEEEEEEecCcccccc----cCHHHhhhEEEeCHHHHHHHHhcCC
Confidence 11233333332222222 2336889999999999999876543
No 31
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.82 E-value=2.8e-19 Score=127.08 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=74.6
Q ss_pred ccceeEEEEEecCCcEEEEEecC----CCCeE-ECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711 8 YRPNVGVCLINSDSQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA 82 (173)
Q Consensus 8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w-~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 82 (173)
.+.++.++|++.++++||++|.. .||.| .+|||++++|||+.+||+||++||||+.+..+... . .+.+...
T Consensus 36 ~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~-~---~~~~~~~ 111 (180)
T PRK15393 36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEH-G---QFYFEDE 111 (180)
T ss_pred ceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceec-e---eEEecCC
Confidence 57778888899999999999874 35655 58999999999999999999999999985332211 1 1111111
Q ss_pred cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
.. .....+|.+... .... .+++|+..+.|++++++.+++..
T Consensus 112 ~~------------~~~~~~f~~~~~---~~~~----~~~~E~~~~~W~~~~el~~~~~~ 152 (180)
T PRK15393 112 NC------------RVWGALFSCVSH---GPFA----LQEEEVSEVCWMTPEEITARCDE 152 (180)
T ss_pred Cc------------eEEEEEEEEEeC---CCCC----CChHHeeEEEECCHHHHhhhhhh
Confidence 00 001123333322 1222 23368999999999999998643
No 32
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.82 E-value=2.6e-19 Score=127.78 Aligned_cols=121 Identities=20% Similarity=0.405 Sum_probs=83.0
Q ss_pred CCccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCccccc--
Q 030711 6 SGYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD-- 78 (173)
Q Consensus 6 ~~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~-- 78 (173)
..++++|+++|++.+++|||++|.. .||.|.+| ||++++||++.+||+||+.||||+.+..+...... ..+.
T Consensus 31 ~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~-~~~~~~ 109 (184)
T PRK03759 31 TPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPD-FRYRAT 109 (184)
T ss_pred CCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccce-EEEEEe
Confidence 4588999999999999999999853 57888887 89999999999999999999999986433222211 1111
Q ss_pred CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCc
Q 030711 79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKR 145 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~ 145 (173)
++... ......++|++.... ... .+++|+.++.|++++++.+++.....
T Consensus 110 ~~~~~-----------~~~~~~~vf~~~~~~---~~~----~~~~Ev~~~~W~~~~el~~~i~~~~~ 158 (184)
T PRK03759 110 DPNGI-----------VENEVCPVFAARVTS---ALQ----PNPDEVMDYQWVDPADLLRAVDATPW 158 (184)
T ss_pred cCCCc-----------eeeEEEEEEEEEECC---CCC----CChhHeeeEEEECHHHHHHHHHhCCc
Confidence 11110 001123455554432 222 23368999999999999999876643
No 33
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.2e-19 Score=122.00 Aligned_cols=110 Identities=23% Similarity=0.316 Sum_probs=76.0
Q ss_pred ceeEEEEEecCCcEEEEEecC----CCCeEEC-CCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccc
Q 030711 10 PNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK 84 (173)
Q Consensus 10 ~~v~~~i~~~~~~vLl~~r~~----~~~~w~l-PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 84 (173)
+++.+++++.++++||++|.. .+|.|++ |||++++||++.+||+||++||||+.+..+.... .+.+.....
T Consensus 1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~----~~~~~~~~~ 76 (126)
T cd04697 1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLG----LFYYDTDGN 76 (126)
T ss_pred CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEee----EEEecCCCc
Confidence 467889999999999999874 4689999 5999999999999999999999999964332221 222221110
Q ss_pred cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
....++|.+.... ... .+++|+.++.|++++++.+++..
T Consensus 77 ------------~~~~~~f~~~~~~---~~~----~~~~E~~~~~w~~~~el~~~~~~ 115 (126)
T cd04697 77 ------------RVWGKVFSCVYDG---PLK----LQEEEVEEITWLSINEILQFKEG 115 (126)
T ss_pred ------------eEEEEEEEEEECC---CCC----CCHhHhhheEEcCHHHHHHHhhc
Confidence 0012344443321 222 23368899999999999997654
No 34
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.6e-19 Score=119.90 Aligned_cols=104 Identities=26% Similarity=0.402 Sum_probs=69.1
Q ss_pred eEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711 12 VGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 87 (173)
Q Consensus 12 v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (173)
|++++++ ++++||++|.. .+|.|++|||++++||++.+||+||++||||+++..+.... .+.++...
T Consensus 3 v~~vi~~-~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~----~~~~~~~~---- 73 (117)
T cd04691 3 VVGVLFS-DDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLC----SLYHPTSE---- 73 (117)
T ss_pred EEEEEEE-CCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEE----EEeccCCC----
Confidence 3334454 48999999874 45799999999999999999999999999999853332221 11111110
Q ss_pred ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
....++|.+..... ... .+|+..+.|+++++++....
T Consensus 74 ---------~~~~~~~~~~~~~~--~~~------~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 74 ---------LQLLHYYVVTFWQG--EIP------AQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred ---------eEEEEEEEEEEecC--CCC------cccccccEEcCHHHcchhhh
Confidence 11234444443321 111 15889999999999998654
No 35
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2e-19 Score=119.81 Aligned_cols=111 Identities=26% Similarity=0.444 Sum_probs=70.5
Q ss_pred eeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh--hhhhccCCcccccCCccccc
Q 030711 11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTYDFPPAVKT 85 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~~~~~~~~ 85 (173)
+|.++|++ +++|||++|.+ .+|.|.+|||++++|||+.+||+||++||||+.+. .+.. +.. ..+.+.. .
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~-~~~-~~~~~~~-~-- 75 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRL-AHT-MHRRTED-I-- 75 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEE-EEecCCC-C--
Confidence 45555554 58999999875 25799999999999999999999999999999853 2211 111 0111110 0
Q ss_pred ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
......+|.+..... .... .+++|+..++|++++++.+.+.+
T Consensus 76 ----------~~~~~~~f~~~~~~~--~~~~---~~~~e~~~~~W~~~~~l~~~~~~ 117 (120)
T cd04683 76 ----------ESRIGLFFTVRRWSG--EPRN---CEPDKCAELRWFPLDALPDDTVD 117 (120)
T ss_pred ----------ceEEEEEEEEEeecC--cccc---CCCCcEeeEEEEchHHCcchhcc
Confidence 011123444433221 1111 13357889999999999987654
No 36
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3e-19 Score=119.18 Aligned_cols=113 Identities=24% Similarity=0.312 Sum_probs=70.3
Q ss_pred eeEEEEEecCCcEEEEEecC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 88 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
+|+++++++ +++||++|.+ .++.|.+|||++++||++.+||.||++||||+++... ..+... .+.++....
T Consensus 2 ~v~~ii~~~-~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~-~~~~~~~~~---- 74 (122)
T cd04673 2 AVGAVVFRG-GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG-RLLTVV-DVIERDAAG---- 74 (122)
T ss_pred cEEEEEEEC-CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeec-eeEEEE-EEeeccCCC----
Confidence 456666664 7999999876 3478999999999999999999999999999995322 111111 111111000
Q ss_pred cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
........++|.+.... ... . ..+|+..++|++++++.++..
T Consensus 75 ----~~~~~~~~~~~~~~~~~--~~~-~----~~~E~~~~~w~~~~el~~~~~ 116 (122)
T cd04673 75 ----RVEFHYVLIDFLCRYLG--GEP-V----AGDDALDARWVPLDELAALSL 116 (122)
T ss_pred ----ccceEEEEEEEEEEeCC--Ccc-c----CCcccceeEEECHHHHhhCcC
Confidence 00001112233333322 222 1 225888999999999998754
No 37
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3.6e-19 Score=119.67 Aligned_cols=115 Identities=23% Similarity=0.394 Sum_probs=75.4
Q ss_pred cceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhh--ccC-CcccccCCccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA--EVP-NWLTYDFPPAVKT 85 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~--~~~-~~~~~~~~~~~~~ 85 (173)
+.+|++++++.++++||++|... +.|.+|||++++||++.+||.||++||||+.+..... ... ....+.++...
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (129)
T cd04676 2 LPGVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGD-- 78 (129)
T ss_pred cceEEEEEECCCCeEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCC--
Confidence 45778888888899999998864 8899999999999999999999999999998532211 010 00112222111
Q ss_pred ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
.......+|.+..... .... +.+|...++|++++++.++..
T Consensus 79 ---------~~~~~~~~~~~~~~~~--~~~~----~~~e~~~~~w~~~~el~~~~~ 119 (129)
T cd04676 79 ---------VRQYLDITFRCRVVGG--ELRV----GDDESLDVAWFDPDGLPPLLM 119 (129)
T ss_pred ---------cEEEEEEEEEEEeeCC--eecC----CCCceeEEEEEChhhCccccC
Confidence 0111233444444322 1111 225778999999999998755
No 38
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.81 E-value=4.5e-19 Score=119.00 Aligned_cols=54 Identities=24% Similarity=0.413 Sum_probs=46.3
Q ss_pred ceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711 10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (173)
Q Consensus 10 ~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~ 65 (173)
.+|+++|+ .++++||+++.. .+.|.+|||++++|||+.+||+||++||||++..
T Consensus 2 ~~~~~vi~-~~~~vLlv~~~~-~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~ 55 (125)
T cd04689 2 LRARAIVR-AGNKVLLARVIG-QPHYFLPGGHVEPGETAENALRRELQEELGVAVS 55 (125)
T ss_pred eEEEEEEE-eCCEEEEEEecC-CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceee
Confidence 45666666 568999999865 5689999999999999999999999999999853
No 39
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.81 E-value=2.9e-19 Score=124.52 Aligned_cols=109 Identities=21% Similarity=0.266 Sum_probs=73.4
Q ss_pred ceeEEEEEecC--CcEEEEEecC----CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711 10 PNVGVCLINSD--SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA 82 (173)
Q Consensus 10 ~~v~~~i~~~~--~~vLl~~r~~----~~~~w~lPgG~ie~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 82 (173)
.+|.+++.+.+ ++|||++|.. .+|.|++|||++++| |++.+||+||++||||+++..+.. +.....+....
T Consensus 3 ~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~-l~~~~~~~~~~- 80 (157)
T cd03426 3 AAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEV-LGRLPPYYTRS- 80 (157)
T ss_pred eEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEE-EEECCCccccC-
Confidence 35566666665 6899999986 468999999999999 999999999999999998543221 11111110000
Q ss_pred cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
....++|++..... .... .+++|+.++.|++++++.+.
T Consensus 81 --------------~~~v~~~~~~~~~~-~~~~----~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 81 --------------GFVVTPVVGLVPPP-LPLV----LNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred --------------CCEEEEEEEEECCC-CCCC----CCHHHhheeEEEcHHHHhCc
Confidence 11234555555442 1222 23368999999999999985
No 40
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.81 E-value=5.9e-19 Score=117.91 Aligned_cols=112 Identities=22% Similarity=0.302 Sum_probs=70.7
Q ss_pred eEEEEEecC---CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711 12 VGVCLINSD---SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 88 (173)
Q Consensus 12 v~~~i~~~~---~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
+++++++.+ +++||+++.+. +.|.+|||+++.|||+.+||+||++||||+........+.. ..+.++...
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~~-~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~-~~~~~~~~~----- 75 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGR-FEYRKRSKN----- 75 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecCC-CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEE-EEeeecCCC-----
Confidence 455555543 67999998763 78999999999999999999999999999984322122221 112111100
Q ss_pred cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
.......++|.+...... ... +..++..++|++++++.+++.
T Consensus 76 -----~~~~~~~~~f~~~~~~~~--~~~----~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 76 -----RPPRCEVAVFPLEVTEEL--DEW----PEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred -----CCceEEEEEEEEEEeccc--cCC----cccCceEEEEecHHHHHHhcC
Confidence 001112355555554321 111 114677899999999988764
No 41
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.4e-18 Score=119.02 Aligned_cols=123 Identities=21% Similarity=0.314 Sum_probs=75.8
Q ss_pred eeEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhh---hccCCcccccCCccc
Q 030711 11 NVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII---AEVPNWLTYDFPPAV 83 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~---~~~~~~~~~~~~~~~ 83 (173)
.|++++++.++++||++|.. ++|.|.+|||++++||++.+||+||+.||+|+...... ..+. ...+.|+...
T Consensus 3 ~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~-~~~~~~~~~~ 81 (143)
T cd04694 3 GVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLG-LWESVYPPLL 81 (143)
T ss_pred EEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEe-eecccccccc
Confidence 56778889999999999974 46899999999999999999999999999999853221 1111 0111222111
Q ss_pred ccccccccCCccccceEEEEEEEEccCcc-ccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 84 KTKVNRLWGGEWHGQAQKWFLMKLTNDES-EINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
... .....+..+|++....... .......+.++|+.+++|++++++.+++.
T Consensus 82 ~~~-------~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~ 133 (143)
T cd04694 82 SRG-------LPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVS 133 (143)
T ss_pred CCC-------cccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHH
Confidence 000 0000112333333222111 11111112346999999999999999764
No 42
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=4.6e-19 Score=118.67 Aligned_cols=108 Identities=22% Similarity=0.356 Sum_probs=71.5
Q ss_pred eeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 88 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
.+++++++.++++||++|.+. ++.|.+|||++++||++.+||+||++||||+.+... ..+.. ...+.
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~-~~~~~---~~~~~------- 70 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT-TLLSV---EEQGG------- 70 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecc-eEEEE---EccCC-------
Confidence 356677888899999998753 479999999999999999999999999999985322 11111 11000
Q ss_pred cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711 89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 140 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 140 (173)
+....+|.+...+. ...... .+..|+.+++|+++++++..+
T Consensus 71 --------~~~~~~f~a~~~~g--~~~~~~-~~~~e~~~~~W~~~~el~~~~ 111 (123)
T cd04671 71 --------SWFRFVFTGNITGG--DLKTEK-EADSESLQARWYSNKDLPLPL 111 (123)
T ss_pred --------eEEEEEEEEEEeCC--eEccCC-CCCcceEEEEEECHHHCCCcc
Confidence 01124454444432 222111 123577899999999995433
No 43
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=9.8e-19 Score=117.84 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=72.4
Q ss_pred cceeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 87 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (173)
|.+++++|++ ++++||++|... .+.|.+|||++++|||+.+||+||+.||||+.+... .... ...+......
T Consensus 1 r~~a~~iv~~-~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~-~~~~-~~~~~~~~~~---- 73 (128)
T cd04687 1 RNSAKAVIIK-NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIG-PLLF-VREYIGHNPT---- 73 (128)
T ss_pred CcEEEEEEEE-CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccC-cEEE-EEEEeccCcc----
Confidence 4566667665 589999998753 368999999999999999999999999999995321 1100 0111110000
Q ss_pred ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
.+.....+...++|.+........ .... .+..+...++|++++++.++..
T Consensus 74 --~~~~~~~~~i~~~f~~~~~~~~~~-~~~~-~~~~~~~~~~W~~~~~l~~~~~ 123 (128)
T cd04687 74 --SELPGHFHQVELMFECKIKSGTPA-KTPS-KPDPNQIGVEWLKLKELGDIPL 123 (128)
T ss_pred --ccCCCceeEEEEEEEEEECCCCcc-cccC-CCCCCEEeeEEEcHHHhCcccc
Confidence 000011122335555555433211 1111 1113456899999999988643
No 44
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=5e-19 Score=119.91 Aligned_cols=118 Identities=28% Similarity=0.447 Sum_probs=77.7
Q ss_pred ceeEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCC-cccccCCcccc
Q 030711 10 PNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPN-WLTYDFPPAVK 84 (173)
Q Consensus 10 ~~v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~-~~~~~~~~~~~ 84 (173)
+++.+++++.+++|||+++.. .++.|.+|||+++.||++.+||.||+.||||+....+...+.. ...+.+...
T Consensus 1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~-- 78 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGV-- 78 (133)
T ss_pred CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCc--
Confidence 468889999999999998875 2469999999999999999999999999999985232222110 001111111
Q ss_pred cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
...+..++|++...............+..++..++|++++++.+.
T Consensus 79 ----------~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 79 ----------DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred ----------cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 111235677777764322211111122235668999999999885
No 45
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=3.5e-19 Score=118.96 Aligned_cols=111 Identities=21% Similarity=0.391 Sum_probs=73.5
Q ss_pred eeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 89 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (173)
.++++|+++++++||++|... .+.|.+|||++++|||+.+||+||++||||+.+ .+...+. .+.++.
T Consensus 2 ~~~~ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~-~~~~~~~---~~~~~~-------- 69 (121)
T cd04669 2 RASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV-RVEEIFL---IVNQNG-------- 69 (121)
T ss_pred ceEEEEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeE-eeeeEEE---EEeeCC--------
Confidence 356677887799999998753 368999999999999999999999999999995 3222221 111111
Q ss_pred ccCCccccceEEEEEEEEccCccccccC---CCCCCcccceeeEeCHHHHHHhhh
Q 030711 90 LWGGEWHGQAQKWFLMKLTNDESEINLA---NGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
...++|.+............ ...+..++..+.|+++++++++..
T Consensus 70 --------~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~ 116 (121)
T cd04669 70 --------RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPL 116 (121)
T ss_pred --------cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCC
Confidence 12456666665432111100 001124566899999999998643
No 46
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.80 E-value=9.1e-19 Score=120.16 Aligned_cols=114 Identities=30% Similarity=0.451 Sum_probs=71.8
Q ss_pred cceeEEEEEecCCcEEEEEecCCC--CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 86 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~~~--~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 86 (173)
..+|.+++. .+++|||++|.+.| |.|.+|||++|.|||+++||.||++||||+++ .....+ ..++.+...
T Consensus 10 ~~~v~~~i~-~~~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~-~~~~~~---~v~~~~~rd--- 81 (145)
T COG1051 10 LVAVGALIV-RNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRV-RVLELL---AVFDDPGRD--- 81 (145)
T ss_pred ceeeeEEEE-eCCEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcc-cceeEE---EEecCCCCC---
Confidence 344554544 44599999999865 78999999999999999999999999999994 222222 223333221
Q ss_pred cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
-.+ +...+.+............ +.++...+.|+++++++.+..+
T Consensus 82 --------~r~-~~v~~~~~~~~~~g~~~~~---~~~d~~~~~~~~~~~l~~~~~~ 125 (145)
T COG1051 82 --------PRG-HHVSFLFFAAEPEGELLAG---DGDDAAEVGWFPLDELPELPLP 125 (145)
T ss_pred --------Cce-eEEEEEEEEEecCCCcccC---ChhhHhhcceecHhHccccccc
Confidence 000 1122222222211222221 1146788999999999986544
No 47
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=6.9e-19 Score=118.27 Aligned_cols=116 Identities=19% Similarity=0.262 Sum_probs=72.2
Q ss_pred eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 90 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (173)
.|.+++++ +++|||+++.. .+.|.+|||++++||++.+||.||+.||||+.+............+.+....
T Consensus 3 ~v~~vi~~-~~~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~------- 73 (126)
T cd04688 3 RAAAIIIH-NGKLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKP------- 73 (126)
T ss_pred EEEEEEEE-CCEEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcc-------
Confidence 44555554 45999998876 6799999999999999999999999999999853322211110111111110
Q ss_pred cCCccccceEEEEEEEEccCcccccc-CCCCCCcccceeeEeCHHHHHHhh
Q 030711 91 WGGEWHGQAQKWFLMKLTNDESEINL-ANGEADPEFAEWKWASPEEVVEQA 140 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~E~~~~~W~~~~e~~~~~ 140 (173)
.....++|.+........... ....+.+|+.++.|++++++..+.
T Consensus 74 -----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 119 (126)
T cd04688 74 -----GHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIK 119 (126)
T ss_pred -----cEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCc
Confidence 112345666666543221100 001133688999999999998653
No 48
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.80 E-value=5.5e-19 Score=120.34 Aligned_cols=107 Identities=26% Similarity=0.465 Sum_probs=68.3
Q ss_pred EEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccccc
Q 030711 14 VCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLW 91 (173)
Q Consensus 14 ~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (173)
.+++..++++||++|... ++.|.+|||++++||++.+||+||++||||+....... +.. ..+..+..
T Consensus 5 ~~~i~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~-~~~~~~~~--------- 73 (137)
T cd03427 5 LCFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKL-VGI-IKFPFPGE--------- 73 (137)
T ss_pred EEEEEECCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceE-EEE-EEEEcCCC---------
Confidence 333444589999999874 68999999999999999999999999999998533222 111 11111110
Q ss_pred CCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 92 GGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
......+++.+........ ..+|...++|++++++.++..
T Consensus 74 -----~~~~~~~~f~~~~~~~~~~-----~~~e~~~~~W~~~~el~~~~~ 113 (137)
T cd03427 74 -----EERYGVFVFLATEFEGEPL-----KESEEGILDWFDIDDLPLLPM 113 (137)
T ss_pred -----CcEEEEEEEEECCcccccC-----CCCccccceEEcHhhcccccC
Confidence 0112344444433222221 124557899999999987644
No 49
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=5.6e-19 Score=118.24 Aligned_cols=113 Identities=17% Similarity=0.273 Sum_probs=72.7
Q ss_pred ceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711 10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 89 (173)
Q Consensus 10 ~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (173)
..|.++|+++ +++||+++.+ .+.|.+|||++++|||+.+||+||++||||+.. .....+.......+.... .
T Consensus 3 ~~v~~~i~~~-~~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~-~~~~~~~~~~~~~~~~~~-~---- 74 (123)
T cd04672 3 VDVRAAIFKD-GKILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV-KVRKLAAVDDRNKHHPPP-Q---- 74 (123)
T ss_pred ceEEEEEEEC-CEEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCee-eEeEEEEEeccccccCCC-C----
Confidence 4567777766 8999998876 689999999999999999999999999999985 332222221111111000 0
Q ss_pred ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
. ......+|.+..... .+.. .+|...++|++++++.++..+
T Consensus 75 ----~-~~~~~~~f~~~~~~~--~~~~-----~~E~~~~~W~~~~el~~l~~~ 115 (123)
T cd04672 75 ----P-YQVYKLFFLCEILGG--EFKP-----NIETSEVGFFALDDLPPLSEK 115 (123)
T ss_pred ----c-eEEEEEEEEEEecCC--cccC-----CCceeeeEEECHHHCcccccC
Confidence 0 000123444444322 1111 147889999999999887654
No 50
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.79 E-value=7.9e-19 Score=122.40 Aligned_cols=117 Identities=26% Similarity=0.311 Sum_probs=79.0
Q ss_pred CCccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhh-hccCC-ccccc
Q 030711 6 SGYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEII-AEVPN-WLTYD 78 (173)
Q Consensus 6 ~~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~-~~~~~ 78 (173)
..+|++|+++|++.++++||.+|+. +||.|++| ||+++.|| .+||+||++|||||...... ..+.. .+...
T Consensus 24 g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~ 101 (158)
T TIGR02150 24 TPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRAR 101 (158)
T ss_pred CCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEe
Confidence 4588999999999999999999885 57999998 89999999 49999999999999853321 11111 01111
Q ss_pred CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711 79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK 144 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~ 144 (173)
+++.. ....++|.+.... .... ..+|+.++.|++++++.+++...+
T Consensus 102 ~~~g~-------------~~~~~~f~~~~~~---~~~~----~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 102 DAWGE-------------HELCPVFFARAPV---PLNP----NPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred cCCCc-------------EEEEEEEEEecCC---cccC----ChhHeeeEEEeCHHHHHHHHhcCc
Confidence 11110 0112344433322 2222 235999999999999999877543
No 51
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.3e-18 Score=117.68 Aligned_cols=115 Identities=22% Similarity=0.382 Sum_probs=71.3
Q ss_pred eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCccc---ccCCccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLT---YDFPPAVKTKV 87 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~---~~~~~~~~~~~ 87 (173)
+|.++|++ +++|||+++.+ .+.|.+|||++++||++.+||+||++||||+.+......+..+.. ..++..
T Consensus 2 ~~~~ii~~-~~~vLLv~~~~-~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~----- 74 (131)
T cd04686 2 AVRAIILQ-GDKILLLYTKR-YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDA----- 74 (131)
T ss_pred cEEEEEEE-CCEEEEEEEcC-CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCC-----
Confidence 45556665 58999999876 468999999999999999999999999999985332222221111 111111
Q ss_pred ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
.......++|++.+........+.. .+.+....+.|++++++.+.
T Consensus 75 ------~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 75 ------DIFHMISYYYLCEVDAELGAQQLED-YEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred ------ceeEEEEEEEEEEEcCCcCCcccch-hhHhcCCCcEEecHHHHHHh
Confidence 0112234667776654332222211 01111246899999999874
No 52
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1e-18 Score=115.15 Aligned_cols=100 Identities=23% Similarity=0.449 Sum_probs=68.5
Q ss_pred EEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCCc
Q 030711 15 CLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGE 94 (173)
Q Consensus 15 ~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (173)
+|...++++||++|.. +.|.+|||++++||++.+||.||++||||+....+.... .+. ..
T Consensus 5 ~i~~~~~~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~----~~~--~~------------ 64 (112)
T cd04667 5 VICRRGGRVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLF----HVD--GG------------ 64 (112)
T ss_pred EEEecCCEEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEE----EEe--CC------------
Confidence 3344678999999875 889999999999999999999999999999853322211 111 10
Q ss_pred cccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 95 WHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
....++|.+.+... ... ...+|+..++|++++++.++..+
T Consensus 65 --~~~~~~f~~~~~~~--~~~----~~~~e~~~~~W~~~~el~~~~~~ 104 (112)
T cd04667 65 --STRHHVFVASVPPS--AQP----KPSNEIADCRWLSLDALGDLNAS 104 (112)
T ss_pred --CEEEEEEEEEcCCc--CCC----CCchheeEEEEecHHHhhhcccc
Confidence 01234555554432 111 12258889999999999987653
No 53
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.79 E-value=5e-18 Score=121.27 Aligned_cols=120 Identities=21% Similarity=0.154 Sum_probs=78.8
Q ss_pred eeEEEEEecCCcEEEEEecCCC---CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNVP---GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 87 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~~---~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (173)
+|.++.+++++++||+++.+.+ ..|+||||.+++||++.+||+||+.||||+.+..+...........
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~--------- 119 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPS--------- 119 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCC---------
Confidence 4666667778899999987633 5799999999999999999999999999999644332221111111
Q ss_pred ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHH
Q 030711 88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEV 151 (173)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~ 151 (173)
+.....++|++..... .. ...++.|...+.|+|++++.+++..........+
T Consensus 120 -------~~~~~~~~f~a~~~~~--~~---~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d~~ti 171 (185)
T PRK11762 120 -------YFSSKMNIVLAEDLYP--ER---LEGDEPEPLEVVRWPLADLDELLARPDFSEARSV 171 (185)
T ss_pred -------ccCcEEEEEEEEcccc--cc---CCCCCCceeEEEEEcHHHHHHHHHcCCCCcHHHH
Confidence 1112234555443221 11 1134457778999999999999877654333333
No 54
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1e-18 Score=116.04 Aligned_cols=54 Identities=28% Similarity=0.484 Sum_probs=47.5
Q ss_pred eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~ 65 (173)
.+++++++.++++||++|.. .+.|.+|||++++||++.+||+||++||||+...
T Consensus 2 ~~~~~v~~~~~~vLl~~r~~-~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~ 55 (118)
T cd04690 2 IAAALILVRDGRVLLVRKRG-TDVFYLPGGKIEAGETPLQALIRELSEELGLDLD 55 (118)
T ss_pred eEEEEEEecCCeEEEEEECC-CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccC
Confidence 35667788889999998775 5789999999999999999999999999999853
No 55
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.78 E-value=2.6e-18 Score=116.70 Aligned_cols=54 Identities=39% Similarity=0.659 Sum_probs=46.1
Q ss_pred eeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711 11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~ 64 (173)
.++.+|++.++++||++|.. .+|.|.+|||++++||++.+||.||+.||||+.+
T Consensus 5 ~~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~ 61 (135)
T PRK10546 5 DVVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEA 61 (135)
T ss_pred EEEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 34445556778999999865 3589999999999999999999999999999984
No 56
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.78 E-value=1.2e-18 Score=129.72 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=78.9
Q ss_pred ceeEEEEEecCCcEEEEEecCCC-CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711 10 PNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 88 (173)
Q Consensus 10 ~~v~~~i~~~~~~vLl~~r~~~~-~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
++|.+ ++..++++||+++.+.+ |.|++|||++++|||+++||+||++||||+++..+..... ..+.+++.
T Consensus 133 paViv-~V~~~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s--~~~~~p~~------ 203 (256)
T PRK00241 133 PCIIV-AVRRGDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGS--QPWPFPHS------ 203 (256)
T ss_pred CEEEE-EEEeCCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEe--EeecCCCe------
Confidence 34443 44556899999987644 7999999999999999999999999999998644322211 12223321
Q ss_pred cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHH
Q 030711 89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRT 154 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~ 154 (173)
..+.|.+..... .+.. +++|+.+++|+++++++.+... ..+...+++.
T Consensus 204 ----------lm~~f~a~~~~~--~~~~----~~~Ei~~a~W~~~del~~lp~~--~sia~~li~~ 251 (256)
T PRK00241 204 ----------LMLGFHADYDSG--EIVF----DPKEIADAQWFRYDELPLLPPS--GTIARRLIED 251 (256)
T ss_pred ----------EEEEEEEEecCC--cccC----CcccEEEEEEECHHHCcccCCc--hHHHHHHHHH
Confidence 234555555432 2322 3358899999999999876433 3456666544
No 57
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.77 E-value=5.4e-18 Score=114.86 Aligned_cols=109 Identities=22% Similarity=0.413 Sum_probs=69.6
Q ss_pred cCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhh-hhhcc-CCcccccCCcccccccccccCCcc
Q 030711 19 SDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE-IIAEV-PNWLTYDFPPAVKTKVNRLWGGEW 95 (173)
Q Consensus 19 ~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (173)
++..+||+++... .|.|.||||++++|||+.+||.||++||||+.+.. ++... .....+.++..... ...
T Consensus 11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~-------~~~ 83 (132)
T cd04661 11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRN-------EGI 83 (132)
T ss_pred cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCccccc-------ccC
Confidence 3467899988753 37899999999999999999999999999997421 11111 11122333321100 011
Q ss_pred ccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 96 HGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
.+....+|.+..... ..... +|+.+++|++++++.+++.
T Consensus 84 ~~~~~~~f~~~~~~g--~~~~~-----~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 84 VGAKVFFFKARYMSG--QFELS-----QNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred cccEEEEEEEEEecC--ccccC-----CCcceeEecCHHHHHhhcC
Confidence 122345666665443 22221 4789999999999999764
No 58
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=7.4e-18 Score=113.41 Aligned_cols=54 Identities=33% Similarity=0.629 Sum_probs=47.6
Q ss_pred eeEEEEEecCCcEEEEEecCC----CCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711 11 NVGVCLINSDSQIFVASRLNV----PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~----~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~ 64 (173)
++.++|++.++++||++|... +|.|.+|||++++||++.+||+||++||||+.+
T Consensus 3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~ 60 (129)
T cd04699 3 AVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV 60 (129)
T ss_pred eEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEE
Confidence 566677777799999998852 579999999999999999999999999999985
No 59
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.76 E-value=1e-17 Score=112.70 Aligned_cols=117 Identities=27% Similarity=0.477 Sum_probs=73.2
Q ss_pred eEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711 12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 88 (173)
Q Consensus 12 v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
++++|++.++++||++|.. .+|.|+||||++++||++.+||.||+.||||+..... ..+.. ..+.+++...
T Consensus 7 ~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~-~~~~~-~~~~~~~~~~---- 80 (129)
T PRK10776 7 AVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA-TLFEK-LEYEFPDRHI---- 80 (129)
T ss_pred EEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc-eEEEE-EEeeCCCcEE----
Confidence 3345567778999999975 3589999999999999999999999999999984321 11111 1233332110
Q ss_pred cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHH
Q 030711 89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l 155 (173)
...+|.+.... ... ...|..+++|++++++.....+ .....+++.+
T Consensus 81 ----------~~~~~~~~~~~--~~~------~~~e~~~~~W~~~~~l~~~~~p---~~~~~~~~~~ 126 (129)
T PRK10776 81 ----------TLWFWLVESWE--GEP------WGKEGQPGRWVSQVALNADEFP---PANEPIIAKL 126 (129)
T ss_pred ----------EEEEEEEEEEC--Ccc------CCccCCccEEecHHHCccCCCC---cccHHHHHHH
Confidence 11233222211 111 1136678899999999986543 4444444443
No 60
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.75 E-value=8.2e-18 Score=113.67 Aligned_cols=103 Identities=26% Similarity=0.394 Sum_probs=70.0
Q ss_pred cceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 86 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 86 (173)
+.+|+++++ .++++||++|... .|.|.+|||++++||++.+||.||++||||+++ .....+. .+..+..
T Consensus 13 ~~~v~~ii~-~~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~-~~~~~~~---~~~~~~~---- 83 (130)
T cd04511 13 KIIVGCVPE-WEGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARV-EIDGLYA---VYSVPHI---- 83 (130)
T ss_pred cEEEEEEEe-cCCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEE-EeeeEEE---EEecCCc----
Confidence 334444555 4589999998753 479999999999999999999999999999985 3322221 1222110
Q ss_pred cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHH
Q 030711 87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV 137 (173)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~ 137 (173)
....++|.+.+.... +.. ..|..+++|+++++++
T Consensus 84 ----------~~~~~~f~~~~~~~~--~~~-----~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 84 ----------SQVYMFYRARLLDLD--FAP-----GPESLEVRLFTEEEIP 117 (130)
T ss_pred ----------eEEEEEEEEEEcCCc--ccC-----CcchhceEEECHHHCC
Confidence 123466777665432 211 1467889999999997
No 61
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.75 E-value=2.9e-17 Score=118.46 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=81.5
Q ss_pred ceeEEEEEec-CCcEEEEEecCCC--------CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711 10 PNVGVCLINS-DSQIFVASRLNVP--------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP 80 (173)
Q Consensus 10 ~~v~~~i~~~-~~~vLl~~r~~~~--------~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 80 (173)
.+|+++.+++ +++++|+++.+.+ -.|++|+|.+++||++.+||+||+.||||+.+..+......+.+.
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~sp--- 126 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASP--- 126 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCC---
Confidence 3566677776 4799999998854 269999999999999999999999999999965443322211111
Q ss_pred cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCch
Q 030711 81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRP 146 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~ 146 (173)
.+.....++|++..+..... ......++.|...+.|+|++++.+++.+....
T Consensus 127 -------------g~~~e~~~~fla~~~~~~~~-~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~ 178 (202)
T PRK10729 127 -------------GGTSERSSIMVGEVDATTAS-GIHGLADENEDIRVHVVSREQAYQWVEEGKID 178 (202)
T ss_pred -------------CcCceEEEEEEEEEcchhcc-cCCCCCCCCCceEEEEEcHHHHHHHHHcCCCC
Confidence 12223456777765332111 11112345677889999999999998776544
No 62
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.75 E-value=2.3e-17 Score=117.58 Aligned_cols=120 Identities=19% Similarity=0.251 Sum_probs=80.5
Q ss_pred cceeEEEEEecC-CcEEEEEecCC--------CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccC
Q 030711 9 RPNVGVCLINSD-SQIFVASRLNV--------PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDF 79 (173)
Q Consensus 9 ~~~v~~~i~~~~-~~vLl~~r~~~--------~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~ 79 (173)
..+|++++++.+ +++||+++.+. +..|++|+|++++||++++||+||+.||||+.+..+...... +..
T Consensus 44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~---~~~ 120 (185)
T TIGR00052 44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSF---YSS 120 (185)
T ss_pred CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEE---EcC
Confidence 346666777654 78999998762 347999999999999999999999999999996443322211 111
Q ss_pred CcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCch
Q 030711 80 PPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRP 146 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~ 146 (173)
+ .......++|++........ . ..+.+++|.....|++++++.+++.+....
T Consensus 121 ~-------------g~~~~~~~~f~a~~~~~~~~-~-~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~ 172 (185)
T TIGR00052 121 P-------------GGVTELIHLFIAEVDDNQAA-G-IGGGADEEEIEVLHLVFSQALQWIKEGKID 172 (185)
T ss_pred C-------------CCCcEEEEEEEEEEchhhcC-C-CCCCCCccceEEEEeCHHHHHHHHHcCCCC
Confidence 1 12223456777776543211 1 112233566789999999999998776543
No 63
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.73 E-value=1e-16 Score=114.08 Aligned_cols=123 Identities=20% Similarity=0.276 Sum_probs=79.6
Q ss_pred CCccceeEEE--EEecC--CcEEEEEecC----CCCeE-ECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhh--ccCCc
Q 030711 6 SGYRPNVGVC--LINSD--SQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA--EVPNW 74 (173)
Q Consensus 6 ~~~~~~v~~~--i~~~~--~~vLl~~r~~----~~~~w-~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~--~~~~~ 74 (173)
.-+|++|.+. +.|.+ +++++.+|+. +||.| .+|+|++++||++.+||+||+.||||++...+.. .+..
T Consensus 29 g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~- 107 (180)
T cd03676 29 GLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGV- 107 (180)
T ss_pred CceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccE-
Confidence 3488888875 44554 7899999985 68999 5999999999999999999999999998543321 1110
Q ss_pred ccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711 75 LTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY 143 (173)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 143 (173)
..+.+... ...+.....++|.+..+.. .... .+++|+.++.|++++++.+++...
T Consensus 108 ~~~~~~~~---------~~~~~~e~~~~f~~~~~~~-~~~~----~~~~Ev~~~~~~~~~el~~~l~~g 162 (180)
T cd03676 108 VSYLREGE---------AGGLQPEVEYVYDLELPPD-FIPA----PQDGEVESFRLLTIDEVLRALKEG 162 (180)
T ss_pred EEEEEEcC---------CCcEeeeEEEEEEEEcCCC-CeeC----CCCCcEeEEEEECHHHHHHHHHcC
Confidence 11111100 0011111234444443221 1122 234689999999999999988764
No 64
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=5.8e-17 Score=108.97 Aligned_cols=56 Identities=30% Similarity=0.462 Sum_probs=47.1
Q ss_pred cceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711 9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~ 64 (173)
+..+++++++.++++||.+|.. ..|.|++|||.++.||++.++|+||+.||||+.+
T Consensus 4 ~~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~ 62 (128)
T TIGR00586 4 QQIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQ 62 (128)
T ss_pred EEEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcc
Confidence 3344445567778999999975 3479999999999999999999999999999984
No 65
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.73 E-value=6.3e-17 Score=107.54 Aligned_cols=119 Identities=24% Similarity=0.412 Sum_probs=79.0
Q ss_pred CCccceeEEEEEecCC---cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711 6 SGYRPNVGVCLINSDS---QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA 82 (173)
Q Consensus 6 ~~~~~~v~~~i~~~~~---~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 82 (173)
.++|..++|+++.-++ +|||+..++.+-.|.+|+|++|+||+..+||+||+.||.|+. +.+...+..+..+.....
T Consensus 6 ~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~-G~l~~~~~g~~~~~~~~~ 84 (145)
T KOG2839|consen 6 AGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVK-GKLGRLLGGFEDFLSKKH 84 (145)
T ss_pred CCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCce-eeeeccccchhhccChhh
Confidence 6788888887775544 789999888677899999999999999999999999999998 444443332222221111
Q ss_pred cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
... .....|.......- +. .. ....++...+|++++++.+.+.
T Consensus 85 ~~~------------~k~~~~~l~v~e~l-e~-wp--~~~~~~r~r~W~~ledA~~~~~ 127 (145)
T KOG2839|consen 85 RTK------------PKGVMYVLAVTEEL-ED-WP--ESEHEFREREWLKLEDAIELCQ 127 (145)
T ss_pred ccc------------ccceeehhhhhhhc-cc-Ch--hhhcccceeEEeeHHHHHHHHh
Confidence 100 11234444433221 11 11 1113578999999999999876
No 66
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.72 E-value=1.2e-16 Score=123.88 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=73.5
Q ss_pred ceeEEEEEecCCcEEEEEecCCC--CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhh--hhccCCcccccCCccccc
Q 030711 10 PNVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYDFPPAVKT 85 (173)
Q Consensus 10 ~~v~~~i~~~~~~vLl~~r~~~~--~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~~~~~~~~ 85 (173)
.+|.++|+ .+++|||++|...+ |.|.+|||++++|||+.+||+||++||||+++... ...+.....+.++.....
T Consensus 204 vtv~avv~-~~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~~ 282 (340)
T PRK05379 204 VTVDAVVV-QSGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSLR 282 (340)
T ss_pred eEEEEEEE-ECCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCCC
Confidence 34444544 56899999998643 68999999999999999999999999999984222 111111122333322100
Q ss_pred ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
.....++|.+...... ..... ..+|..+++|++++++.++
T Consensus 283 ----------~~~i~~~f~~~~~~~~-~~~~~---~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 283 ----------GRTITHAFLFEFPAGE-LPRVK---GGDDADKARWVPLAELLAM 322 (340)
T ss_pred ----------CcEEEEEEEEEecCCc-cCccC---CCCceeeEEEEEHHHhhhh
Confidence 0112456666655332 11111 2257889999999999875
No 67
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.72 E-value=8.6e-17 Score=107.16 Aligned_cols=106 Identities=29% Similarity=0.479 Sum_probs=69.2
Q ss_pred EEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711 13 GVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 89 (173)
Q Consensus 13 ~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (173)
.+++++.++++||++|.. .+|.|.+|||+++.+|++.++|.||+.||||+..... ..+. ...+.++..
T Consensus 5 ~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~-~~~~-~~~~~~~~~------- 75 (124)
T cd03425 5 AAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG-ELLA-TVEHDYPDK------- 75 (124)
T ss_pred EEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEecc-ceEE-EEEeeCCCC-------
Confidence 345566669999999874 4689999999999999999999999999999984321 1111 112222211
Q ss_pred ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
....+++.......... ..|...+.|++++++.++.++
T Consensus 76 ---------~~~~~~~~~~~~~~~~~------~~e~~~~~W~~~~el~~~~~~ 113 (124)
T cd03425 76 ---------RVTLHVFLVELWSGEPQ------LLEHQELRWVPPEELDDLDFP 113 (124)
T ss_pred ---------eEEEEEEEEeeeCCCcc------cccCceEEEeeHHHcccCCCC
Confidence 12233333322111111 146788999999999987554
No 68
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.71 E-value=4.1e-16 Score=111.51 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=82.4
Q ss_pred cceeEEEEEec-CCcEEEEEecCCC-------C--eEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCccccc
Q 030711 9 RPNVGVCLINS-DSQIFVASRLNVP-------G--AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD 78 (173)
Q Consensus 9 ~~~v~~~i~~~-~~~vLl~~r~~~~-------~--~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~ 78 (173)
+.+|++++++. +++++|+++.+.+ + .|++|+|.+++| ++++||+||+.||||+.+..+...... +.
T Consensus 45 ~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~---~~ 120 (191)
T PRK15009 45 GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFEL---YM 120 (191)
T ss_pred CCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEE---Ec
Confidence 34566677776 5799999999844 3 699999999976 699999999999999986554443222 11
Q ss_pred CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHH
Q 030711 79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEV 151 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~ 151 (173)
.| .++....++|++...... ... ..+.+++|...+.|+|++++.+++.+........+
T Consensus 121 sp-------------G~s~e~~~lf~a~~~~~~-~~~-~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti 178 (191)
T PRK15009 121 SP-------------GGVTELIHFFIAEYSDSQ-RAN-AGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTV 178 (191)
T ss_pred CC-------------cccCcEEEEEEEEECchh-ccc-CCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHH
Confidence 11 222334566766653221 111 11234568889999999999999887654433333
No 69
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.68 E-value=7.3e-16 Score=102.11 Aligned_cols=111 Identities=29% Similarity=0.476 Sum_probs=73.1
Q ss_pred eeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 89 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (173)
++++++++.++++||++|... +|.|.+|||+++.||++.++|+||+.||+|+.......... ..+..+.
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~--~~~~~~~-------- 71 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGV--YEVESPD-------- 71 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEE--EEeeccC--------
Confidence 567777888799999998863 68999999999999999999999999999998431111110 1111110
Q ss_pred ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711 90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 140 (173)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 140 (173)
........+|.+.+...... . ....|....+|++++++.++.
T Consensus 72 ----~~~~~~~~~~~~~~~~~~~~-~----~~~~e~~~~~w~~~~~l~~~~ 113 (123)
T cd02883 72 ----EGEHAVVFVFLARLVGGEPT-L----LPPDEISEVRWVTLDELPALA 113 (123)
T ss_pred ----CCceEEEEEEEEEeCCCCcC-C----CCCCccceEEEEcHHHCcccc
Confidence 00111234555555443221 0 122477889999999998754
No 70
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.68 E-value=6.9e-16 Score=110.33 Aligned_cols=112 Identities=15% Similarity=0.073 Sum_probs=71.0
Q ss_pred ccceeEEEEEe--cCCcEEEEEecC----CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711 8 YRPNVGVCLIN--SDSQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP 80 (173)
Q Consensus 8 ~~~~v~~~i~~--~~~~vLl~~r~~----~~~~w~lPgG~ie~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 80 (173)
.+.+++++.+. .++.+|+++|.. .+|.|+||||.+|++ |++.+||+||+.||||+....+.........+...
T Consensus 29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~ 108 (190)
T PRK10707 29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSST 108 (190)
T ss_pred CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccC
Confidence 45555555453 335788888663 357899999999985 68999999999999999864433222111011111
Q ss_pred cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711 81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 140 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 140 (173)
+.....+++...... .. ..+++|+..+.|+|++++.++.
T Consensus 109 ----------------~~~~~~~v~~~~~~~-~~----~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 109 ----------------GYQVTPVVGIIPPDL-PY----RANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred ----------------CcEEEEEEEEECCCC-CC----CCChhhhheEEEEeHHHHhCcc
Confidence 112344444444321 11 1344789999999999998863
No 71
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.67 E-value=9.1e-16 Score=101.95 Aligned_cols=54 Identities=37% Similarity=0.640 Sum_probs=42.9
Q ss_pred eeEEEEEecC---CcEEEEEec------CCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711 11 NVGVCLINSD---SQIFVASRL------NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (173)
Q Consensus 11 ~v~~~i~~~~---~~vLl~~r~------~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~ 64 (173)
++++++++.+ .+|||++|. ...+.|++|||+++.||++.+||+||++||||+.+
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~ 64 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCV 64 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcc
Confidence 3455555332 368999852 23578999999999999999999999999999984
No 72
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.65 E-value=4.8e-15 Score=109.38 Aligned_cols=142 Identities=21% Similarity=0.303 Sum_probs=81.3
Q ss_pred CCccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCC-----------------HHHHHHHHHHHHhCCc
Q 030711 6 SGYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGED-----------------PKLAAMRELREETGIV 63 (173)
Q Consensus 6 ~~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~-----------------~~~aa~RE~~EEtGl~ 63 (173)
..+|+++.++|+|.++++||++|+. +||.|... +||+..||+ ..+||+||+.||+||.
T Consensus 53 gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~ 132 (247)
T PLN02552 53 GLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIP 132 (247)
T ss_pred CceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCC
Confidence 4699999999999999999999985 78999777 465555432 6789999999999998
Q ss_pred hhhhh-hccCCcccccCCcccc--cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711 64 SAEII-AEVPNWLTYDFPPAVK--TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 140 (173)
Q Consensus 64 ~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 140 (173)
...+. ..+....++.|..... .... +.+......++++........+.+ +++|+.+++|++++++.+++
T Consensus 133 ~~~~~~~~l~~~~~~~y~~~~~~~~~~~----~~~~E~e~~~v~~~~~~~~~~l~l----q~eEV~~~~wvs~~el~~~~ 204 (247)
T PLN02552 133 AEDVPVDQFTFLTRLHYKAADDVTHGPD----GKWGEHELDYLLFIRPVRDVKVNP----NPDEVADVKYVNREELKEMM 204 (247)
T ss_pred ccccccccceeeeEEEEecccccccccC----CCccceEEEEEEEEEecCCCcccC----CHHHhheEEEEeHHHHHHHH
Confidence 43211 0111111111111100 0000 000000111222222222223333 34799999999999999986
Q ss_pred hhc----CchHHHHHHHHH
Q 030711 141 VDY----KRPTYEEVMRTF 155 (173)
Q Consensus 141 ~~~----~~~~~~~~~~~l 155 (173)
... ..+.+..+++.+
T Consensus 205 ~~~~~~~~tpw~~~~~~~~ 223 (247)
T PLN02552 205 RKESGLKLSPWFRLIVDNF 223 (247)
T ss_pred hhcCCcccCHHHHHHHHHH
Confidence 421 124555555443
No 73
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.63 E-value=3.7e-16 Score=115.47 Aligned_cols=108 Identities=28% Similarity=0.429 Sum_probs=78.1
Q ss_pred cceeEEEEEecCCcEEEEEecC-CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711 9 RPNVGVCLINSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 87 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~-~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (173)
-++|.+++++.+. +||.++.+ .+|.|++.+|+||+|||+++|+.||++||+|+.+.++.+...+ .+.||++.+
T Consensus 144 dP~vIv~v~~~~~-ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQ--PWPfP~SLM--- 217 (279)
T COG2816 144 DPCVIVAVIRGDE-ILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQ--PWPFPHSLM--- 217 (279)
T ss_pred CCeEEEEEecCCc-eeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEecc--CCCCchhhh---
Confidence 3455555555544 77766665 6799999999999999999999999999999998776655443 566666543
Q ss_pred ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711 88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 141 (173)
.-|.+.+..+ ++.. +..|+.+++||+.+++...+.
T Consensus 218 -------------igf~aey~sg--eI~~----d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 218 -------------LGFMAEYDSG--EITP----DEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred -------------hhheeeeccc--cccC----CcchhhhccccCHhHHhhhcC
Confidence 3444444543 3443 336999999999999666544
No 74
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.61 E-value=5.8e-15 Score=97.80 Aligned_cols=52 Identities=33% Similarity=0.463 Sum_probs=43.4
Q ss_pred eEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhh
Q 030711 12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66 (173)
Q Consensus 12 v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~ 66 (173)
|.++++ .++++||+++. .+.|.+|||++++||++.+||+||++||||+.+..
T Consensus 3 v~vi~~-~~~~vLl~~~~--~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~ 54 (118)
T cd04665 3 VLVICF-YDDGLLLVRHK--DRGWEFPGGHVEPGETIEEAARREVWEETGAELGS 54 (118)
T ss_pred EEEEEE-ECCEEEEEEeC--CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCc
Confidence 444444 45899999877 36799999999999999999999999999999633
No 75
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.61 E-value=1.8e-14 Score=99.41 Aligned_cols=105 Identities=22% Similarity=0.245 Sum_probs=67.3
Q ss_pred eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 90 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (173)
.|.++++. ++++||+++.. ..|++|||++++|||+.+||.||++||||+.+..+..... +......
T Consensus 26 ~V~ii~~~-~~~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~----~~~~~~~------- 91 (156)
T TIGR02705 26 HVLVIPRY-KDQWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQ----YEVEGES------- 91 (156)
T ss_pred EEEEEEEE-CCEEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEE----EEecCCC-------
Confidence 44444444 45898888764 4599999999999999999999999999998544332221 1111110
Q ss_pred cCCccccceEEEEEEEEccCccccccCCCCCCcccceee-EeCHHHHHHhhhhc
Q 030711 91 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWK-WASPEEVVEQAVDY 143 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~-W~~~~e~~~~~~~~ 143 (173)
.....++|++...... .. +|..+.. +++++++.+++...
T Consensus 92 -----~~~~~~vf~A~~~~~~---~~------~e~~E~~~~~~~~~~~~~~~~g 131 (156)
T TIGR02705 92 -----TDFVKDVYFAEVSALE---SK------DDYLETKGPVLLQEIPDIIKAD 131 (156)
T ss_pred -----cEEEEEEEEEEEeccc---cC------CCceeeEeEEEHHHHHHHHhcC
Confidence 1112356666665321 11 3545555 89999999876554
No 76
>PLN02791 Nudix hydrolase homolog
Probab=99.61 E-value=1.8e-14 Score=120.32 Aligned_cols=123 Identities=21% Similarity=0.373 Sum_probs=80.9
Q ss_pred CCccceeEEEEEec-CCcEEEEEecC----CCCeEEC-CCcccCCCCCHHHHHHHHHHHHhCCchhh-hhhccCCccccc
Q 030711 6 SGYRPNVGVCLINS-DSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAE-IIAEVPNWLTYD 78 (173)
Q Consensus 6 ~~~~~~v~~~i~~~-~~~vLl~~r~~----~~~~w~l-PgG~ie~gE~~~~aa~RE~~EEtGl~~~~-~~~~~~~~~~~~ 78 (173)
..+|++|.|+|++. ++++||++|+. +||.|++ ||||++.||+..+||+||+.||+||.... .+..+.. ....
T Consensus 29 Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~-~~~~ 107 (770)
T PLN02791 29 GDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFV-FLQE 107 (770)
T ss_pred CCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeee-EEEE
Confidence 45899999999997 68999999985 7899999 69999999999999999999999998421 1111110 0000
Q ss_pred CCcccccccccccCCcc-ccceEEEEEEEEccCcc--ccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 79 FPPAVKTKVNRLWGGEW-HGQAQKWFLMKLTNDES--EINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
.. ...+.+ .....++|++....... ++. ++++|+.++.|++++++.+++..
T Consensus 108 ~~---------~~~g~~~e~E~~~VYlv~~~~~~p~~~~~----lq~eEV~~v~wvsl~El~~~l~~ 161 (770)
T PLN02791 108 CV---------INDGKFINNEYNDVYLVTTLDPIPLEAFT----LQESEVSAVKYMSIEEYKSALAK 161 (770)
T ss_pred ee---------ccCCCcceeeEEEEEEEEECCCCCcccCC----CChhhhheeEEEcHHHHHHHHhc
Confidence 00 000100 01123445444322211 222 24479999999999999987643
No 77
>PRK08999 hypothetical protein; Provisional
Probab=99.61 E-value=8.4e-15 Score=112.71 Aligned_cols=56 Identities=34% Similarity=0.531 Sum_probs=47.4
Q ss_pred cceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711 9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~ 64 (173)
+..+++++++.++++||.+|.. .+|.|.+|||++++||++.++|.||++||||+.+
T Consensus 5 ~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~ 63 (312)
T PRK08999 5 IHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEV 63 (312)
T ss_pred eEEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCce
Confidence 3344445667779999999875 4589999999999999999999999999999984
No 78
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1.9e-14 Score=95.22 Aligned_cols=49 Identities=37% Similarity=0.358 Sum_probs=40.1
Q ss_pred EEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711 15 CLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (173)
Q Consensus 15 ~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~ 64 (173)
++... +.+||++|... .|.|.||||++++||++.+||.||+.||||+.+
T Consensus 10 vl~~~-~~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~ 60 (118)
T cd04674 10 LLPVD-DGLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAV 60 (118)
T ss_pred EEEEC-CCEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence 33344 45777777653 379999999999999999999999999999985
No 79
>PLN02709 nudix hydrolase
Probab=99.57 E-value=3.6e-14 Score=102.75 Aligned_cols=97 Identities=21% Similarity=0.254 Sum_probs=66.8
Q ss_pred CcEEEEEecC----CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCCchh--hhhhccCCcccccCCcccccccccccCC
Q 030711 21 SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSA--EIIAEVPNWLTYDFPPAVKTKVNRLWGG 93 (173)
Q Consensus 21 ~~vLl~~r~~----~~~~w~lPgG~ie~g-E~~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (173)
-++||++|.. .+|.|+||||++|++ +++.+||+||+.||+||... .++..+..+. .+.
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~---t~s------------ 115 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFV---NKK------------ 115 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeE---CCC------------
Confidence 3789999986 468999999999996 57899999999999999843 3333332211 111
Q ss_pred ccccceEEEEEEEEccC-ccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 94 EWHGQAQKWFLMKLTND-ESEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
+...+.|++.+... ..... +.++|+..+.|+|++.+.+.
T Consensus 116 ---g~~V~P~V~~~~~~~~~~~~----~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 116 ---GMSVAPVIGFLHDKKAFKPL----PNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred ---CCEEEEEEEEecCCCCcccc----CChhhhheeEEecHHHHhCC
Confidence 11346677766532 12221 23469999999999999754
No 80
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.57 E-value=4.4e-14 Score=94.18 Aligned_cols=51 Identities=33% Similarity=0.546 Sum_probs=40.5
Q ss_pred eEEEEEecCC--cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711 12 VGVCLINSDS--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (173)
Q Consensus 12 v~~~i~~~~~--~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~ 64 (173)
|.+++.+.++ ++|+.+... +.|.+|||.+++||++.+||+||++||||+.+
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~--~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL--AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC--CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 4455555554 566665543 45999999999999999999999999999985
No 81
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.56 E-value=4.2e-14 Score=100.20 Aligned_cols=41 Identities=29% Similarity=0.489 Sum_probs=37.0
Q ss_pred cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCc
Q 030711 22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63 (173)
Q Consensus 22 ~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~ 63 (173)
++|+++|.. .|.|.||||++++||++.+||.||+.||||+.
T Consensus 50 ~vLl~~r~~-~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 50 QFVAIKRPD-SGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred EEEEEEeCC-CCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 678888865 68999999999999999999999999999764
No 82
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.54 E-value=2.7e-15 Score=111.47 Aligned_cols=111 Identities=27% Similarity=0.342 Sum_probs=72.2
Q ss_pred ccceeEEEEEecCCcEEEEEec-CC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCccccc-CCcccc
Q 030711 8 YRPNVGVCLINSDSQIFVASRL-NV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD-FPPAVK 84 (173)
Q Consensus 8 ~~~~v~~~i~~~~~~vLl~~r~-~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~-~~~~~~ 84 (173)
.-+.|.+++++++++.+|..|+ ++ +|.|..++|++|+|||++|||+||++||||+++..+...-.. .+. +|...+
T Consensus 186 ~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQ--PWP~~p~SLM 263 (345)
T KOG3084|consen 186 TDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQ--PWPLMPQSLM 263 (345)
T ss_pred CCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecC--CCCCCchHHH
Confidence 3456667888888766554444 44 489999999999999999999999999999997665432211 222 332221
Q ss_pred cccccccCCccccceEEEEEEEEccCccccccCCCCCCc-ccceeeEeCHHHHHHhhh
Q 030711 85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP-EFAEWKWASPEEVVEQAV 141 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~W~~~~e~~~~~~ 141 (173)
+..+.... .+..+++ +.+ |..+++||+.+++.+.+.
T Consensus 264 ----------------Igc~ala~-~~~~I~v----d~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 264 ----------------IGCLALAK-LNGKISV----DKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred ----------------HHHHHHHh-hCCcccc----CcchhhhhcccccHHHHHHHHH
Confidence 11111111 1123333 334 889999999999987654
No 83
>PLN03143 nudix hydrolase; Provisional
Probab=99.50 E-value=4.6e-13 Score=100.90 Aligned_cols=126 Identities=20% Similarity=0.220 Sum_probs=73.8
Q ss_pred eeEEEEE-ecCCc--EEEEEecCCC---CeEECCCcccCC-CCCHHHHHHHHHHHHhCCch--hhhhhccCCcccccCCc
Q 030711 11 NVGVCLI-NSDSQ--IFVASRLNVP---GAWQMPQGGIED-GEDPKLAAMRELREETGIVS--AEIIAEVPNWLTYDFPP 81 (173)
Q Consensus 11 ~v~~~i~-~~~~~--vLl~~r~~~~---~~w~lPgG~ie~-gE~~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~ 81 (173)
+|+++++ +.+++ ++|+++.+.+ -.|++|+|.+|+ +|++.+||+||+.||||+.+ ..+........ +.
T Consensus 130 aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~----~~ 205 (291)
T PLN03143 130 AVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLD----PS 205 (291)
T ss_pred eEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccc----cC
Confidence 5666554 44455 8999988844 389999999997 58999999999999999973 22322211100 00
Q ss_pred ccccccccccCCccccceEEEEEEEEccCccccc---c--CCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711 82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEIN---L--ANGEADPEFAEWKWASPEEVVEQAVDY 143 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~E~~~~~W~~~~e~~~~~~~~ 143 (173)
.. ...+..........++|++........+. . ..-.++.|...+.|++++++..+..+.
T Consensus 206 ~g---~~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ 269 (291)
T PLN03143 206 TG---CRMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADA 269 (291)
T ss_pred cC---ceEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhH
Confidence 00 00011122223334555544443221111 0 111244677889999999999887543
No 84
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.42 E-value=3.8e-12 Score=86.82 Aligned_cols=55 Identities=36% Similarity=0.591 Sum_probs=43.3
Q ss_pred eeEEEEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHH-HHHHHHHHHhCCchh
Q 030711 11 NVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKL-AAMRELREETGIVSA 65 (173)
Q Consensus 11 ~v~~~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~-aa~RE~~EEtGl~~~ 65 (173)
.+.+++.... .++|+.++....+.|.+|||++++||++.+ ||+||++||||+...
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 3333333333 788888888744599999999999998888 999999999999854
No 85
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.41 E-value=1.1e-12 Score=89.86 Aligned_cols=119 Identities=20% Similarity=0.282 Sum_probs=86.7
Q ss_pred ccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchh--hhhhccCCcccccCC
Q 030711 8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTYDFP 80 (173)
Q Consensus 8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~~~ 80 (173)
.|++++++|+|.+|++||.+|.. +|+.|.-. .||--+||+..+||+|-+..|+||+.. .....+ -.+.|.
T Consensus 32 LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il---~rf~Yr 108 (185)
T COG1443 32 LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEIL---PRFRYR 108 (185)
T ss_pred HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccc---cceEEe
Confidence 79999999999999999999874 78999887 688889999999999999999999954 222222 233333
Q ss_pred cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711 81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY 143 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 143 (173)
..... -.+.+.+.+++.+.... .+.. .++|+.+++|++++++.+++...
T Consensus 109 A~~~~---------~~~E~Eic~V~~~~~~~-~~~~----npdEV~~~~wv~~e~l~~~~~~~ 157 (185)
T COG1443 109 AADPD---------GIVENEICPVLAARLDS-ALDP----NPDEVMDYRWVSPEDLKEMVDAT 157 (185)
T ss_pred ccCCC---------CcceeeeeeEEEEeecC-CCCC----ChHHhhheeccCHHHHHHhhcCC
Confidence 22211 11234566666666543 2222 23799999999999999987654
No 86
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=99.38 E-value=1.7e-12 Score=96.64 Aligned_cols=121 Identities=25% Similarity=0.419 Sum_probs=84.8
Q ss_pred CCCccceeEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711 5 PSGYRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP 80 (173)
Q Consensus 5 ~~~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 80 (173)
++..+..++.+|+|.+++||+++... ..|.|.+|+|.++++|++.++|+||++||||++... ...+..-..+.-.
T Consensus 111 ~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef-~eVla~r~~H~~~ 189 (295)
T KOG0648|consen 111 NASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEF-VEVLAFRRAHNAT 189 (295)
T ss_pred chhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhh-hhHHHHHhhhcch
Confidence 34577788889999999999987643 457899999999999999999999999999997321 1111110111110
Q ss_pred cccccccccccCCccc-cceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711 81 PAVKTKVNRLWGGEWH-GQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK 144 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~ 144 (173)
+. .+...|+++.+..-..+++.+. -|+..++|+++++..+....+.
T Consensus 190 --------------~~~~ksd~f~~c~L~p~s~~i~~~~----~ei~~~~Wmp~~e~v~qp~~~~ 236 (295)
T KOG0648|consen 190 --------------FGLIKSDMFFTCELRPRSLDITKCK----REIEAAAWMPIEEYVSQPLVHP 236 (295)
T ss_pred --------------hhcccccceeEEEeeccccccchhH----HHHHHHhcccHHHhhccccccc
Confidence 00 1235788888876555555433 5888889999999988765443
No 87
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.33 E-value=3.9e-11 Score=83.83 Aligned_cols=117 Identities=26% Similarity=0.331 Sum_probs=80.4
Q ss_pred eeEEEE-EecCC--cEEEEEecCCC-C--eEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccc
Q 030711 11 NVGVCL-INSDS--QIFVASRLNVP-G--AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK 84 (173)
Q Consensus 11 ~v~~~i-~~~~~--~vLl~~r~~~~-~--~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 84 (173)
+|+++. +..+| .++|+++.+-| | ..++|+|-++.||+++.||+||++||||+. .++...-.. .+..
T Consensus 75 gVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~~s~~--~f~D----- 146 (225)
T KOG3041|consen 75 GVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDMVSPT--VFLD----- 146 (225)
T ss_pred eEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeeecccc--EEcC-----
Confidence 456543 33344 57888888855 3 789999999999999999999999999998 443222111 1111
Q ss_pred cccccccCCccccceEEEEEEEEccCccc-cccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711 85 TKVNRLWGGEWHGQAQKWFLMKLTNDESE-INLANGEADPEFAEWKWASPEEVVEQAVDY 143 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 143 (173)
.+++.+...+.++.++++..+ .+..++.+..|..++.-++++++.+.+.+.
T Consensus 147 --------PGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l 198 (225)
T KOG3041|consen 147 --------PGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADL 198 (225)
T ss_pred --------CCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhh
Confidence 223344466777777766432 233456777899999999999999876543
No 88
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.29 E-value=5.3e-11 Score=77.41 Aligned_cols=130 Identities=25% Similarity=0.363 Sum_probs=78.7
Q ss_pred ceeEEEEEe-cCC--cEEEEEecC------CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711 10 PNVGVCLIN-SDS--QIFVASRLN------VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP 80 (173)
Q Consensus 10 ~~v~~~i~~-~~~--~vLl~~r~~------~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 80 (173)
.++++++.. ..+ .|||++.-. ..|.|++|+|....||++..||.||..||+||.+.--...++. +..+
T Consensus 4 ~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~---~kQ~ 80 (161)
T COG4119 4 LSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGS---LKQS 80 (161)
T ss_pred ccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhh---hccC
Confidence 344555443 234 345555331 3478999999999999999999999999999985221111111 1111
Q ss_pred cccccccccccCCccccceEEEEEEEEcc-------CccccccCC--C--CCCcccceeeEeCHHHHHHhhhhcCchHHH
Q 030711 81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTN-------DESEINLAN--G--EADPEFAEWKWASPEEVVEQAVDYKRPTYE 149 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~--~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 149 (173)
. +..++.|....+. ..++..++. + ...+|+..+.||++.++...+...+++++.
T Consensus 81 G---------------GKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~gQRpfld 145 (161)
T COG4119 81 G---------------GKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKGQRPFLD 145 (161)
T ss_pred C---------------CcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhhccchHHH
Confidence 0 1122333332221 111222111 1 345689999999999999998888888888
Q ss_pred HHHHHHhh
Q 030711 150 EVMRTFRP 157 (173)
Q Consensus 150 ~~~~~l~~ 157 (173)
++.++...
T Consensus 146 rL~a~~~a 153 (161)
T COG4119 146 RLMAHAVA 153 (161)
T ss_pred HHHHHhcc
Confidence 88765433
No 89
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.17 E-value=4.4e-10 Score=80.79 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=67.1
Q ss_pred ceeEEEEEec-C--CcEEEEEecC----CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCc
Q 030711 10 PNVGVCLINS-D--SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP 81 (173)
Q Consensus 10 ~~v~~~i~~~-~--~~vLl~~r~~----~~~~w~lPgG~ie~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 81 (173)
.+|.+.+++. + -.|||.+|++ .+|.-.||||..++. .+-.+||.||+.||.|++. .....++.......+
T Consensus 44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~-~~~~~~g~l~~~~~r- 121 (246)
T KOG3069|consen 44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP-ELVDVLGALPPFVLR- 121 (246)
T ss_pred ccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCH-HHhhhhhhccceeec-
Confidence 3455556655 2 3688999886 568899999999985 5778899999999999994 222222221111111
Q ss_pred ccccccccccCCccccceEEEEEEEEccCc--cccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDE--SEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
.... ...+++...... ....++. .|+..+.|+|++++..-
T Consensus 122 ~~~~--------------v~p~v~~l~~~~~l~~~~ln~----gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 122 SGWS--------------VFPVVGFLSDKKILPSLRLNS----GEVESAFWVPLTDLLLP 163 (246)
T ss_pred cCcc--------------cceeEEEEecccccccccCCc----hheeeeeeeeHHHHhhh
Confidence 0000 122222222211 2223322 58999999999999864
No 90
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.09 E-value=3.8e-09 Score=69.58 Aligned_cols=51 Identities=22% Similarity=0.504 Sum_probs=41.6
Q ss_pred eEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCC
Q 030711 12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62 (173)
Q Consensus 12 v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl 62 (173)
+.++++..++++||.+|.. .+|.|+||+|.++.+++..++..|++.++.++
T Consensus 5 ~~~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~ 58 (118)
T cd03431 5 IAVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL 58 (118)
T ss_pred EEEEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc
Confidence 3444455578999999975 46899999999999999999999999888764
No 91
>PLN02839 nudix hydrolase
Probab=98.74 E-value=1.6e-07 Score=72.56 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=65.2
Q ss_pred CcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhh--hhccCCcccccCCcccccccccccCC
Q 030711 21 SQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYDFPPAVKTKVNRLWGG 93 (173)
Q Consensus 21 ~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (173)
.++.+.+|+. +||+|+.- +|++..||++.++++||+.||.||...-. ....+ ..+|.+... .
T Consensus 218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G-~VsY~~~~~----------~ 286 (372)
T PLN02839 218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVG-AVSYMDIDQ----------Y 286 (372)
T ss_pred eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeE-EEEEEEEcC----------C
Confidence 4577777774 78988766 89999999999999999999999984211 11111 111211110 0
Q ss_pred ccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 94 EWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
.. +....|+|-+.-.. ++.+ ...+.|+..+.+++++++.+.+..
T Consensus 287 g~--~~evly~YDLeLP~-df~P--~~qDGEVe~F~Lm~v~EV~~~l~~ 330 (372)
T PLN02839 287 CF--KRDVLFCYDLELPQ-DFVP--KNQDGEVESFKLIPVAQVANVIRK 330 (372)
T ss_pred cc--ccCEEEEeeeecCC-cccc--CCCccceeEEEEecHHHHHHHHHc
Confidence 11 11234444433221 2211 123479999999999999988754
No 92
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=2.3e-08 Score=70.27 Aligned_cols=136 Identities=22% Similarity=0.353 Sum_probs=86.3
Q ss_pred CccceeEEEEEecCCcEEEEEecC----CCCeEECC-----C---cccCC--CCCHHHHHHHHHHHHhCCchhhhh-hcc
Q 030711 7 GYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-----Q---GGIED--GEDPKLAAMRELREETGIVSAEII-AEV 71 (173)
Q Consensus 7 ~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-----g---G~ie~--gE~~~~aa~RE~~EEtGl~~~~~~-~~~ 71 (173)
-.|++++|+++|.++++||.+|+. .|+.|.-. - |..+. +.....||+|-+.-|+||+...+. ..+
T Consensus 50 lLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~ 129 (225)
T KOG0142|consen 50 LLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEF 129 (225)
T ss_pred hhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHc
Confidence 378999999999999999999885 56666432 1 22222 236788999999999999843322 122
Q ss_pred CCcccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCc---hHH
Q 030711 72 PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKR---PTY 148 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~---~~~ 148 (173)
.+...+.|..... +..|.+.+-|+..+.. +..++ +.++|+.+++|++.+++..++..... +-+
T Consensus 130 ~~ltrihYkA~sd---------g~wGEhEiDYiL~~~~-~~~~n----PnpnEv~e~ryvs~eelkel~~~~~~~~TPWf 195 (225)
T KOG0142|consen 130 NFLTRIHYKAPSD---------GIWGEHEIDYILFLVK-DVTLN----PNPNEVSEIRYVSREELKELVAKASAGFTPWF 195 (225)
T ss_pred ccceeeeeecCCC---------CCcccceeeEEEEEec-cCCCC----CChhhhhHhheecHHHHHHHHhccccCCChHH
Confidence 3333444433321 2224455556555554 22222 34479999999999999998765432 455
Q ss_pred HHHHHHHh
Q 030711 149 EEVMRTFR 156 (173)
Q Consensus 149 ~~~~~~l~ 156 (173)
..+.+.+.
T Consensus 196 kli~~~~l 203 (225)
T KOG0142|consen 196 KLISENFL 203 (225)
T ss_pred HHHHHHHH
Confidence 55555543
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.24 E-value=2.5e-06 Score=56.05 Aligned_cols=102 Identities=19% Similarity=0.299 Sum_probs=50.6
Q ss_pred EEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711 14 VCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 90 (173)
Q Consensus 14 ~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (173)
+++++.++++||.+|.. ..|.|+||.--.+. ++..+.+.+.+.+..|+...... .++ ...+.+++...
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~~-~v~H~fSH~~~------ 72 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVE-PLG-TVKHVFSHRRW------ 72 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S--SE-EEEEE-SSEEE------
T ss_pred EEEEEeCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhhe-ecC-cEEEEccceEE------
Confidence 57788999999999997 45899999977764 33355555555566676532111 111 12333333211
Q ss_pred cCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 91 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
...+|.+.+...... ...+..|++++++.++..+
T Consensus 73 --------~~~~~~~~~~~~~~~----------~~~~~~W~~~~~l~~~~~p 106 (114)
T PF14815_consen 73 --------TIHVYEVEVSADPPA----------EPEEGQWVSLEELDQYPLP 106 (114)
T ss_dssp --------EEEEEEEEEE-SS--------------TTEEEEEGGGGGGS---
T ss_pred --------EEEEEEEEecCCCCC----------CCCCcEEEEHHHHhhCCCC
Confidence 123444444432111 2468899999999987654
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.94 E-value=6e-06 Score=62.54 Aligned_cols=102 Identities=19% Similarity=0.368 Sum_probs=64.2
Q ss_pred EEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCC
Q 030711 15 CLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGG 93 (173)
Q Consensus 15 ~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (173)
.++++. .++||++..... .|.+|.|.+..+|+..++|+||+.||||.+....+..-.+ ...
T Consensus 88 ~ild~~~sr~llv~g~qa~-sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~-Ie~---------------- 149 (348)
T KOG2937|consen 88 IILDEKRSRCLLVKGWQAS-SWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEG-IET---------------- 149 (348)
T ss_pred hhhhhhhhhhheeeceecc-cccccCccccccchhhhcchhcccchhhcCHHHHhccccC-ccc----------------
Confidence 455554 578888877644 4999999999999999999999999999996443332111 111
Q ss_pred ccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHH
Q 030711 94 EWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV 137 (173)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~ 137 (173)
++.++.. .+|...+...+.+... ....|+..+.|..++++.
T Consensus 150 nI~dq~~--~~fIi~gvs~d~~f~~-~v~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 150 NIRDQLV--RLFIINGVSEDTNFNP-RVRKEISKIHWHYLDHLV 190 (348)
T ss_pred chhhcee--eeeeeccceeeeecch-hhhccccceeeeehhhhc
Confidence 1122222 3233332222222111 122588999999999994
No 95
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.84 E-value=0.00031 Score=48.14 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=64.4
Q ss_pred ccceeEEEEEecCCcEEEEEecCCC------CeEECC-CcccCCCC--CHHH-----HHHHHHHHHhCCchhhhhh--cc
Q 030711 8 YRPNVGVCLINSDSQIFVASRLNVP------GAWQMP-QGGIEDGE--DPKL-----AAMRELREETGIVSAEIIA--EV 71 (173)
Q Consensus 8 ~~~~v~~~i~~~~~~vLl~~r~~~~------~~w~lP-gG~ie~gE--~~~~-----aa~RE~~EEtGl~~~~~~~--~~ 71 (173)
++.-..-+++-..++||+-+|-... +.+++- |||++.++ +..+ .+.||+.||.++.-..... .+
T Consensus 59 ~KQ~IpYvvi~~edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~l 138 (203)
T COG4112 59 TKQVIPYVVIMDEDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFL 138 (203)
T ss_pred ccccccEEEEecCCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheee
Confidence 4444454555555699999988632 467776 99999754 3332 3889999999998322211 11
Q ss_pred CCcccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711 72 PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 139 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 139 (173)
+.+.. ..+ ....+ ++..+|.......+.+ ..+ .+...++|+.++++.+.
T Consensus 139 GlINd--d~n-eVgkV----------HiG~lf~~~~k~ndve--vKE----kd~~~~kwik~~ele~~ 187 (203)
T COG4112 139 GLIND--DTN-EVGKV----------HIGALFLGRGKFNDVE--VKE----KDLFEWKWIKLEELEKF 187 (203)
T ss_pred eeecC--CCc-ccceE----------EEEEEEEeecccccee--eee----cceeeeeeeeHHHHHHH
Confidence 21111 111 11111 1234455544442222 222 46678999999999983
No 96
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.81 E-value=2.4e-05 Score=56.11 Aligned_cols=39 Identities=28% Similarity=0.549 Sum_probs=33.8
Q ss_pred cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhC
Q 030711 22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61 (173)
Q Consensus 22 ~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtG 61 (173)
+++.++|.. .+.|.+|||.+++||.+-.+..||+.||.=
T Consensus 140 e~vavkr~d-~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPD-NGEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCC-CCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 456677775 678999999999999999999999999963
No 97
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=97.71 E-value=0.002 Score=44.58 Aligned_cols=134 Identities=20% Similarity=0.276 Sum_probs=76.9
Q ss_pred CccceeEEEEEecC---CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch-----hhhhhccCCccccc
Q 030711 7 GYRPNVGVCLINSD---SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-----AEIIAEVPNWLTYD 78 (173)
Q Consensus 7 ~~~~~v~~~i~~~~---~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~-----~~~~~~~~~~~~~~ 78 (173)
+.|++|-.+++... -+|||.+-.+ -.+.+|||.+++||+-.+...|-+.|-+|-.. -.+-..++.|.+..
T Consensus 67 gmRrsvegvlivheH~lPHvLLLQig~--tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr~dg~~~dwtv~ecig~WWRPN 144 (221)
T KOG1689|consen 67 GMRRSVEGVLIVHEHNLPHVLLLQIGN--TFFKLPGGRLRPGEDEADGLKRLLTESLGRSDGLVIDWTVGECIGNWWRPN 144 (221)
T ss_pred hhhheeeeeEEEeecCCCeEEEEeeCC--EEEecCCCccCCCcchhHHHHHHHHHHhcccccccccccHhhhhhcccCCC
Confidence 36777777655443 3677665432 48999999999999999999999999999331 12223445555555
Q ss_pred CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHH
Q 030711 79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVM 152 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~ 152 (173)
|..-...++..+..... .+...|+..+.... .+.. +......-+|+=++-+....+. +++..+.
T Consensus 145 Fe~~~YPyiP~hitkPK--eh~kL~lV~L~~k~-~F~V------PKN~KLlA~PLfeLydN~~~yG-PiiSslp 208 (221)
T KOG1689|consen 145 FETPMYPYIPPHITKPK--EHTKLFLVQLPEKQ-QFAV------PKNFKLLAVPLFELYDNAKTYG-PIISSLP 208 (221)
T ss_pred CCCcccCCCCcccCCch--hccEEEEEEccccc-eEec------cCCceeeeeeHhhhhhcccccc-chhHHHH
Confidence 44433333332222221 23456666666432 2222 1223445567777766544332 4444443
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.54 E-value=0.00074 Score=50.84 Aligned_cols=97 Identities=19% Similarity=0.104 Sum_probs=63.3
Q ss_pred eEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCCccccceEEEEEEEEccCccc
Q 030711 34 AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESE 113 (173)
Q Consensus 34 ~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (173)
..+|..|.++..-|..+.|.||..||+|.+...-..... .....|..-++..+++|++.+......
T Consensus 285 TlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~v--------------a~y~sGVG~SG~~QTmfy~eVTdA~rs 350 (405)
T KOG4432|consen 285 TLELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLV--------------AKYISGVGQSGDTQTMFYVEVTDARRS 350 (405)
T ss_pred eeeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhh--------------heeecccCCcCCeeEEEEEEeehhhcc
Confidence 377888999988999999999999999998422111110 111223445566678887777653311
Q ss_pred cccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711 114 INLANGEADPEFAEWKWASPEEVVEQAVDYK 144 (173)
Q Consensus 114 ~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~ 144 (173)
..-....+++|..+..-+++++++.+...+.
T Consensus 351 gpGgg~~ee~E~IEvv~lsle~a~~~~~q~~ 381 (405)
T KOG4432|consen 351 GPGGGEKEEDEDIEVVRLSLEDAPSLYRQHN 381 (405)
T ss_pred CCCCCcccccceeeEEEechhhhhHHHhccC
Confidence 1111113446888999999999999876543
No 99
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.50 E-value=0.00087 Score=47.49 Aligned_cols=123 Identities=19% Similarity=0.243 Sum_probs=67.3
Q ss_pred CccceeEEEEEec-CC--cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch-----hhhhhccCCccccc
Q 030711 7 GYRPNVGVCLINS-DS--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-----AEIIAEVPNWLTYD 78 (173)
Q Consensus 7 ~~~~~v~~~i~~~-~~--~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~-----~~~~~~~~~~~~~~ 78 (173)
+.|++|.++++.. .+ +|||.+... ..|.+|||.+.+||+..++..|.+.+-.|... -.+-..++.|.+..
T Consensus 41 GmRrsVe~Vllvh~h~~PHvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~ 118 (188)
T PF13869_consen 41 GMRRSVEGVLLVHEHGHPHVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPN 118 (188)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESS
T ss_pred CCceEEEEEEEEecCCCcEEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCC
Confidence 4678887765543 33 578877553 58999999999999999999999999999762 11223345556655
Q ss_pred CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711 79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 140 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 140 (173)
|......++.-+..... ....+|+..+... ..+.. +......-+|+-|+-+..
T Consensus 119 Fe~~~YPYlP~HitkPK--E~~klylV~Lpe~-~~F~V------Pkn~kL~AvPLFeLydN~ 171 (188)
T PF13869_consen 119 FEPFMYPYLPPHITKPK--ECIKLYLVQLPEK-CLFAV------PKNMKLVAVPLFELYDNA 171 (188)
T ss_dssp SSS--BSS--TT-SS-S--EEEEEEEEE--SS-EEEEE------ETTSEEEEEEHHHHTTTH
T ss_pred CCCCCCCCCCcccCChh--heeEEEEEecCCC-ceEec------CCCCeEEeecHhhhhcCh
Confidence 55444443333322221 1234555555542 23333 233567778888887754
No 100
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0046 Score=45.46 Aligned_cols=106 Identities=21% Similarity=0.227 Sum_probs=63.2
Q ss_pred cEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhhhcc-CCcccccCCcccccccccccCCcc
Q 030711 22 QIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEV-PNWLTYDFPPAVKTKVNRLWGGEW 95 (173)
Q Consensus 22 ~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (173)
++.+-+|+. +|+.|+-. +|++-.|-++.++|++|..||+.|+..-..... ....+|.+-.+.. .+
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~---------~~ 219 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQ---------GL 219 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhh---------cc
Confidence 356666664 78888765 999999999999999999999999952111111 1112222211111 11
Q ss_pred ccceEEEEEEEEccCc-cccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711 96 HGQAQKWFLMKLTNDE-SEINLANGEADPEFAEWKWASPEEVVEQAVD 142 (173)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 142 (173)
.. ..-|++-+.-.. .-++ ..+.|+..+.-+++.+..+.++.
T Consensus 220 ~p--e~qYVfDL~l~~d~iP~----~nDGEV~~F~Lltl~~~v~~l~~ 261 (306)
T KOG4313|consen 220 FP--ETQYVFDLELPLDFIPQ----NNDGEVQAFELLTLKDCVERLFT 261 (306)
T ss_pred Cc--cceEEEeccCchhhcCC----CCCCceeeEeeecHHHHHHHHHh
Confidence 11 233444444322 1222 23369999999999998876543
No 101
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.78 E-value=0.003 Score=47.69 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=43.5
Q ss_pred ceeEEEEEecC-CcEEEEEecC-----------CC----------------C-eEECCCcccCCCCCHHHHHHHHHHHHh
Q 030711 10 PNVGVCLINSD-SQIFVASRLN-----------VP----------------G-AWQMPQGGIEDGEDPKLAAMRELREET 60 (173)
Q Consensus 10 ~~v~~~i~~~~-~~vLl~~r~~-----------~~----------------~-~w~lPgG~ie~gE~~~~aa~RE~~EEt 60 (173)
.+|++++++.+ .++|++++.+ .+ | ..++.+|.|+.+-|+.+.|..|+.||+
T Consensus 27 ~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eec 106 (405)
T KOG4432|consen 27 SSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEEC 106 (405)
T ss_pred cceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHh
Confidence 45777778776 5677777654 01 1 367889999999999999999999999
Q ss_pred CCchh
Q 030711 61 GIVSA 65 (173)
Q Consensus 61 Gl~~~ 65 (173)
|..+.
T Consensus 107 gy~v~ 111 (405)
T KOG4432|consen 107 GYRVD 111 (405)
T ss_pred CCcCC
Confidence 99853
No 102
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.039 Score=40.79 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=35.6
Q ss_pred cEEEEEec-CCCCeEECCCccc-CCCCCHHHHHHHHHHHHhCCc
Q 030711 22 QIFVASRL-NVPGAWQMPQGGI-EDGEDPKLAAMRELREETGIV 63 (173)
Q Consensus 22 ~vLl~~r~-~~~~~w~lPgG~i-e~gE~~~~aa~RE~~EEtGl~ 63 (173)
-+||++++ ...+.|.||.+.. +.++++..+|.|.++.-.|-.
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~ 183 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN 183 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence 36788866 3446899999999 899999999999999999965
No 103
>PRK10880 adenine DNA glycosylase; Provisional
Probab=96.51 E-value=0.04 Score=43.31 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=29.4
Q ss_pred eEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCc
Q 030711 12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63 (173)
Q Consensus 12 v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~ 63 (173)
..++++..++++||.+|.. +.|.|+||.. +.. ...++..|+.|+.
T Consensus 233 ~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~~-----~~~~~~~~~~~~~ 280 (350)
T PRK10880 233 GYFLLLQHGDEVWLEQRPPSGLWGGLFCFPQF--ADE-----EELRQWLAQRGIA 280 (350)
T ss_pred EEEEEEEECCEEEEEECCccChhhccccCCCC--cch-----hhHHHHHHhcCCc
Confidence 3344555678999999875 4589999963 211 1245566777875
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=91.76 E-value=1.9 Score=33.17 Aligned_cols=27 Identities=4% Similarity=0.159 Sum_probs=19.0
Q ss_pred eeeEeCHHHHHHhhhhcCchHHHHHHHHHh
Q 030711 127 EWKWASPEEVVEQAVDYKRPTYEEVMRTFR 156 (173)
Q Consensus 127 ~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~ 156 (173)
...|++++++.++..+ ..+..+++.++
T Consensus 256 ~~~w~~~~~~~~~~~p---~~~~k~~~~l~ 282 (289)
T PRK13910 256 PIRFYSLKDLETLPIS---SMTLKILNFLK 282 (289)
T ss_pred cceEecHHHhhhcCCc---HHHHHHHHHHh
Confidence 3489999999997664 55556655444
No 105
>PF14443 DBC1: DBC1
Probab=81.37 E-value=3.1 Score=27.70 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCeEECC--CcccCCC-CCHHHHHHHHHHHHhCCc
Q 030711 32 PGAWQMP--QGGIEDG-EDPKLAAMRELREETGIV 63 (173)
Q Consensus 32 ~~~w~lP--gG~ie~g-E~~~~aa~RE~~EEtGl~ 63 (173)
+|.|+.- ||-...+ ..+..||+|-+++-|||+
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiD 57 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGID 57 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccc
Confidence 3566655 4444442 467899999999999999
No 106
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=77.50 E-value=2.7 Score=21.82 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=11.8
Q ss_pred CCcccCCCCCHHHHHHHHHHHHh
Q 030711 38 PQGGIEDGEDPKLAAMRELREET 60 (173)
Q Consensus 38 PgG~ie~gE~~~~aa~RE~~EEt 60 (173)
-||..-||--+.-++.||+-||.
T Consensus 14 lggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ---------S-HHHHHHHHHHHH
T ss_pred hcccCCCCCCCchHHHHHHHHHH
Confidence 47888888888899999999995
No 107
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=72.41 E-value=9.7 Score=29.96 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=27.6
Q ss_pred cceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCC
Q 030711 9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIED 44 (173)
Q Consensus 9 ~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~ 44 (173)
+.....++.+.+++++|.+|.. ..|.|.+|....+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred hheeeEEEEccCcchhhhhCcccCceecccccccccccc
Confidence 4456667788889999999886 34799999876554
No 108
>KOG4485 consensus Uncharacterized conserved protein, contains ankyrin and FN3 repeats [General function prediction only]
Probab=71.69 E-value=30 Score=28.52 Aligned_cols=121 Identities=15% Similarity=0.258 Sum_probs=66.2
Q ss_pred CccceeEE-EEEecCCcEEEEEecC---------CC--------------CeEECCCcccCCCCCHH------------H
Q 030711 7 GYRPNVGV-CLINSDSQIFVASRLN---------VP--------------GAWQMPQGGIEDGEDPK------------L 50 (173)
Q Consensus 7 ~~~~~v~~-~i~~~~~~vLl~~r~~---------~~--------------~~w~lPgG~ie~gE~~~------------~ 50 (173)
..|+++.. +|+-.+++||+....- .| =.|+-.+|.++..|+.. -
T Consensus 50 ~l~~GiYfa~iIhcddKVLVTsdD~pPiieVDEn~psalh~D~~WLiKmac~Wddik~L~ddmeralsnnvalhFRnKLi 129 (724)
T KOG4485|consen 50 HLHHGIYFAAIIHCDDKVLVTSDDCPPIIEVDENVPSALHDDHHWLIKMACCWDDIKGLMDDMERALSNNVALHFRNKLI 129 (724)
T ss_pred HhhcceeEEEEEeeCCeEEEecCCCCcceeccCCCCccccchhHHHHHHHhhHHHHhhhhhhhhhhhcccchhhhHHHHH
Confidence 35666555 5666778888765331 11 02777888887766432 2
Q ss_pred HHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeE
Q 030711 51 AAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKW 130 (173)
Q Consensus 51 aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W 130 (173)
.|.--+.|-+||...-.+.. ....+.+ ..+|+..+......... .+.+.+|
T Consensus 130 nAacqMQeALGI~diGhl~Y----kPL~dan------------------g~~~L~cVq~ie~qka~-------qiin~RW 180 (724)
T KOG4485|consen 130 NAACQMQEALGIRDIGHLHY----KPLIDAN------------------GCFFLLCVQFIEPQKAF-------QIINLRW 180 (724)
T ss_pred HHHHHHHHhhCcccccceee----eeeecCC------------------ceEEEEEeeecccccce-------eeeeeee
Confidence 35566888899884222111 1122211 24555555543333222 4578999
Q ss_pred eCHHHHHHhh--hhcCchHHHHHHHHHh
Q 030711 131 ASPEEVVEQA--VDYKRPTYEEVMRTFR 156 (173)
Q Consensus 131 ~~~~e~~~~~--~~~~~~~~~~~~~~l~ 156 (173)
+|.+.+.+.. ...+......++..+.
T Consensus 181 lP~nKL~kK~galhed~T~~dllikqig 208 (724)
T KOG4485|consen 181 LPFNKLLKKKGALHEDTTAIDLLIKQIG 208 (724)
T ss_pred eehHHHHHhhccccCCchHHHHHHHHHH
Confidence 9999998764 1222344444444443
No 109
>PF12860 PAS_7: PAS fold
Probab=69.49 E-value=2.7 Score=26.93 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.9
Q ss_pred eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHH
Q 030711 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMR 54 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~R 54 (173)
..++++++.++++++..+.. ...|.+|...+.+|-++.+.+.+
T Consensus 5 ~~Gv~v~D~~~rl~~~N~~~-~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 5 PQGVAVFDSDGRLVFWNQRF-RELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred CceEEEEcCCCeEEeEcHHH-HHHhCCCHHHhcCCCCHHHHHHH
Confidence 45788999999998887653 56899999999999997776554
No 110
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=67.02 E-value=6.9 Score=30.16 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=29.0
Q ss_pred EEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711 14 VCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (173)
Q Consensus 14 ~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~ 65 (173)
++++++++.++-..---..+.|..+- +.=-+-.+.++||++|+.|++..
T Consensus 17 ~Vivd~~~~~~~~a~~~~Tnh~~ig~---~~~~~rie~~i~~A~~k~g~d~~ 65 (336)
T KOG1794|consen 17 LVIVDEDGTILGRAVGGGTNHWLIGS---TTCASRIEDMIREAKEKAGWDKK 65 (336)
T ss_pred EEEECCCCCEeeEeeccccccccCCc---hHHHHHHHHHHHHHHhhcCCCcc
Confidence 35566666666544332334666551 11112356789999999999853
No 111
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=64.51 E-value=2.8 Score=32.58 Aligned_cols=43 Identities=33% Similarity=0.576 Sum_probs=35.8
Q ss_pred cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711 22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (173)
Q Consensus 22 ~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~ 64 (173)
-+....+...+..|.||.|.+..||-...+++++-.||+|++.
T Consensus 253 ~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~ 295 (348)
T KOG2937|consen 253 VVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPF 295 (348)
T ss_pred ceeecccccccccccCcccccccCCccccchhhhcCCCcCCcc
Confidence 3344444445678999999999999999999999999999984
No 112
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=62.79 E-value=16 Score=20.75 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=13.6
Q ss_pred eEECCCcccCCCCCHHHHHHHHH
Q 030711 34 AWQMPQGGIEDGEDPKLAAMREL 56 (173)
Q Consensus 34 ~w~lPgG~ie~gE~~~~aa~RE~ 56 (173)
-|-+|||.+-.+=. .|+|.+
T Consensus 23 GWl~Pgg~vi~NPl---kAqR~A 42 (60)
T PF07026_consen 23 GWLMPGGKVITNPL---KAQRLA 42 (60)
T ss_pred eeecCCCeeEcCHH---HHHHHH
Confidence 49999999876533 345544
No 113
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=40.12 E-value=19 Score=28.17 Aligned_cols=27 Identities=37% Similarity=0.342 Sum_probs=22.0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711 38 PQGGIEDGEDPKLAAMRELREETGIVS 64 (173)
Q Consensus 38 PgG~ie~gE~~~~aa~RE~~EEtGl~~ 64 (173)
-+=.+++.+-..+.+.||+.||++|-.
T Consensus 405 ~KL~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 405 KKLGVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred HhhCCChhhcccHHHHHHHHHhcCcce
Confidence 344677777788999999999999873
No 114
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=35.87 E-value=36 Score=20.15 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=25.7
Q ss_pred eEECCCcccCCCCCHHHHHHHHHHHHhCCchhh
Q 030711 34 AWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66 (173)
Q Consensus 34 ~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~ 66 (173)
++.+--.++-.+|.+.+-|.+|+..|.|++..+
T Consensus 35 YFQlLitRLmnneeIsEeaQ~EMA~eAgi~~~r 67 (81)
T PF10820_consen 35 YFQLLITRLMNNEEISEEAQQEMASEAGIDEQR 67 (81)
T ss_pred HHHHHHHHHhccHhhhHHHHHHHHHHcCCcHHH
Confidence 345555566678889999999999999999543
No 115
>PF14044 NETI: NETI protein
Probab=32.78 E-value=38 Score=19.20 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCc
Q 030711 42 IEDGEDPKLAAMRELREETGIV 63 (173)
Q Consensus 42 ie~gE~~~~aa~RE~~EEtGl~ 63 (173)
++.+||+.+|+.| +.+| |.-
T Consensus 4 V~enETI~~CL~R-M~~e-GY~ 23 (57)
T PF14044_consen 4 VEENETISDCLAR-MKKE-GYM 23 (57)
T ss_pred ccCCCcHHHHHHH-HHHc-CCC
Confidence 6789999999999 5555 765
No 116
>PRK07198 hypothetical protein; Validated
Probab=31.19 E-value=95 Score=25.22 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=29.6
Q ss_pred EecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCc
Q 030711 17 INSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63 (173)
Q Consensus 17 ~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~ 63 (173)
++.++.+.+.+-.-. -.|-|||=.-..|-+ +.+.+|-++|+||=-
T Consensus 158 ~~~~g~~~vtk~av~-pvwylpgva~rfg~~-e~~lrr~lfe~t~g~ 202 (418)
T PRK07198 158 LLANGDVVVTKAAIE-PVWYLPGVAERFGVS-ETDLRRTLFEQTGGM 202 (418)
T ss_pred ecCCCcEEEEEeeec-ccccccchHHHcCCC-HHHHHHHHHHHcCCC
Confidence 445566666654443 369999855555433 456889999999943
No 117
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=26.96 E-value=18 Score=22.21 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcc
Q 030711 48 PKLAAMRELREETGIVSAEIIAEV 71 (173)
Q Consensus 48 ~~~aa~RE~~EEtGl~~~~~~~~~ 71 (173)
..+.+++|+++| |+. .++....
T Consensus 13 ~ie~~inELk~d-G~e-PDivL~G 34 (85)
T PF08967_consen 13 LIEEKINELKED-GFE-PDIVLVG 34 (85)
T ss_dssp HHHHHHHHHHHT-T-----EEEE-
T ss_pred HHHHHHHHHHhc-CCC-CCEEEEc
Confidence 567899999998 888 3443333
No 118
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=26.91 E-value=47 Score=27.58 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=36.2
Q ss_pred eeEEEEEecCCcEEEEEecCCCCeEECC-CcccCCC-CCH---HHHHHHHHHHHhCCchhh
Q 030711 11 NVGVCLINSDSQIFVASRLNVPGAWQMP-QGGIEDG-EDP---KLAAMRELREETGIVSAE 66 (173)
Q Consensus 11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lP-gG~ie~g-E~~---~~aa~RE~~EEtGl~~~~ 66 (173)
+..++++|++++++-+........ +| .|.||-+ +.+ ...+++++.++.|+....
T Consensus 16 ssRaivfd~~g~iva~~q~e~~Q~--yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~ 74 (499)
T COG0554 16 SSRAIVFDEDGNIVAIAQREFTQI--YPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGE 74 (499)
T ss_pred ceeEEEECCCCCchhhhhhhhhhh--CCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 455688999988876665543332 67 5888864 222 345788888899988543
No 119
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=26.90 E-value=23 Score=24.95 Aligned_cols=15 Identities=53% Similarity=0.736 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCchhh
Q 030711 52 AMRELREETGIVSAE 66 (173)
Q Consensus 52 a~RE~~EEtGl~~~~ 66 (173)
|..|++||+|+++..
T Consensus 159 aVk~lr~~hgI~VIS 173 (218)
T COG1707 159 AVKELREEHGIPVIS 173 (218)
T ss_pred HHHHHHHhcCCeEEE
Confidence 789999999999643
No 120
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=26.86 E-value=1.3e+02 Score=24.01 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=27.2
Q ss_pred CCCCCccceeEEEEEecCCcEEEE-----EecCCCC--eEECCCcccCC---CCCHHHHHHHHHHH
Q 030711 3 GLPSGYRPNVGVCLINSDSQIFVA-----SRLNVPG--AWQMPQGGIED---GEDPKLAAMRELRE 58 (173)
Q Consensus 3 ~~~~~~~~~v~~~i~~~~~~vLl~-----~r~~~~~--~w~lPgG~ie~---gE~~~~aa~RE~~E 58 (173)
+++........++|.-.++.+.-. -+.-+|| .=.+|||||.. .....--|+.++.|
T Consensus 282 nf~~P~dp~~ii~V~A~~DaYVPr~~v~~Lq~~WPGsEvR~l~gGHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 282 NFPVPVDPSAIIFVAAKNDAYVPRHGVLSLQEIWPGSEVRYLPGGHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred ccCCCCCCCcEEEEEecCceEechhhcchHHHhCCCCeEEEecCCcEEEeeechHHHHHHHHHHhh
Confidence 444445555555544333333211 1111454 23389999985 33444445555543
No 121
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=26.58 E-value=59 Score=19.15 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=17.4
Q ss_pred CCCcccCCCCCHHHHHHH--HHHHHhCCc
Q 030711 37 MPQGGIEDGEDPKLAAMR--ELREETGIV 63 (173)
Q Consensus 37 lPgG~ie~gE~~~~aa~R--E~~EEtGl~ 63 (173)
+|+..+..||+++.|..| -.-+++|+-
T Consensus 1 M~~v~V~ene~~d~ALrrFKr~~~k~gil 29 (67)
T COG0828 1 MPQVKVRENEPLDKALRRFKRKVEKEGIL 29 (67)
T ss_pred CCeeeecCCChHHHHHHHHHHHHHHHHHH
Confidence 467788889988887554 123555654
No 122
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.52 E-value=60 Score=19.37 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCCch
Q 030711 51 AAMRELREETGIVS 64 (173)
Q Consensus 51 aa~RE~~EEtGl~~ 64 (173)
+.++|.-||.|++-
T Consensus 58 ~LikeAv~ELgLDF 71 (82)
T PF11212_consen 58 ALIKEAVEELGLDF 71 (82)
T ss_pred HHHHHHHHHhCCcH
Confidence 57899999999994
No 123
>KOG3904 consensus Predicted hydrolase RP2 (NUDIX/MutT superfamily) [Function unknown]
Probab=26.01 E-value=30 Score=25.09 Aligned_cols=18 Identities=44% Similarity=0.562 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHhCCc
Q 030711 46 EDPKLAAMRELREETGIV 63 (173)
Q Consensus 46 E~~~~aa~RE~~EEtGl~ 63 (173)
-.+..+|+||..||.|+-
T Consensus 23 i~lrltAire~feE~gil 40 (209)
T KOG3904|consen 23 IALRLTAIRETFEEVGIL 40 (209)
T ss_pred eeeccHHHHHHHhhhhee
Confidence 567889999999999986
No 124
>PHA02754 hypothetical protein; Provisional
Probab=25.94 E-value=1.3e+02 Score=17.08 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=20.8
Q ss_pred CHHHHHHhhhhcCchHHHHHHHHHhhhhhhcC
Q 030711 132 SPEEVVEQAVDYKRPTYEEVMRTFRPYLNENG 163 (173)
Q Consensus 132 ~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (173)
..+|+++++.+ ..+.+....+++.+.+.|
T Consensus 3 kAeEi~k~i~e---K~Fke~MRelkD~LSe~G 31 (67)
T PHA02754 3 KAEEIPKAIME---KDFKEAMRELKDILSEAG 31 (67)
T ss_pred cHHHHHHHHHH---hHHHHHHHHHHHHHhhCc
Confidence 45788887764 556677777888888766
No 125
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=25.37 E-value=35 Score=26.32 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=27.5
Q ss_pred eEECCCcccCCCCCHHHHHHHHHHHHhCCc
Q 030711 34 AWQMPQGGIEDGEDPKLAAMRELREETGIV 63 (173)
Q Consensus 34 ~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~ 63 (173)
.|.. .|....++++.+++.|++.+++|..
T Consensus 56 ~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~g 84 (295)
T KOG0648|consen 56 KWYL-QGRKGIWLKLPEELARLVEEAAKYG 84 (295)
T ss_pred HHHH-ccCcccceechHHHHhHHHHHHhcC
Confidence 6888 9999999999999999999999986
No 126
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=24.14 E-value=4.2e+02 Score=22.61 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=38.1
Q ss_pred eeEEEEEecC-CcEEEEEecCCCCeEECCCcccCCC-CC---HHHHHHHHHHHHhCCchhhhhhc
Q 030711 11 NVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDG-ED---PKLAAMRELREETGIVSAEIIAE 70 (173)
Q Consensus 11 ~v~~~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~g-E~---~~~aa~RE~~EEtGl~~~~~~~~ 70 (173)
++.+.++|.. |++|-.-...+ -.|....++.+.+ ++ ....|+|.+.+++|++...+...
T Consensus 14 SaRA~v~D~~~G~~la~a~~p~-~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gI 77 (544)
T COG1069 14 SARAGVFDCQTGTLLARAVRPY-PMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGI 77 (544)
T ss_pred ceeEEEEEcCCCcchhhcccce-eccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEE
Confidence 3455777776 66654433322 3688888887643 23 35579999999999996555443
No 127
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=23.48 E-value=3.4e+02 Score=20.74 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=28.3
Q ss_pred ecCC-cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHH-HHHhCCchhhh
Q 030711 18 NSDS-QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMREL-REETGIVSAEI 67 (173)
Q Consensus 18 ~~~~-~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~-~EEtGl~~~~~ 67 (173)
+.++ .||-+.... .+|.|-.++.--..++-.|.. .+.|+.+.+.+
T Consensus 33 ~~~~p~VLtV~q~~-----aLP~GPfep~hrslq~glr~wV~~qT~~plGYi 79 (322)
T COG4111 33 TDGGPRVLTVRQGA-----ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYI 79 (322)
T ss_pred cCCCceEEEecccc-----cCCCCCCchHHHHHHHHHHHHHHHHhcCccchH
Confidence 3434 455554332 299999999876667766665 55677764433
Done!